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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13339#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1885 fasta sequence
[TTCTCCGACGAAACCCCAATCCCCAACTCCGACGCTTCCTCCGCCCCGGCGATCGCCGCCACCCGAATCCCCCCGCGACCGCCTCCGATTGATTCGATCCGGTGATCTTGTGTTGTTGCCACATGATTGTTGTCTCTAAATGATTCTATGGGGGCCCCGAATGAAGTGACATCGTACTCTTCCCTCTCCAAAATCGATAGCAACAACCAGGGAGGTCATCTATCTAGTCTAGTTCCAGCAAACATTTACCCAGCGCAGGATTATCTCTATGAACCGTCCCTGGAGCCAGATTTCCCATCGGAGTACGATTCTAGAGAAGATCCATTTGTTCCAACACGAGCTAGTTCAAATATCAATTTGAAGACTGTCCTAACT-GGGCTGGCTGCTATTGTTTCGGGCACAAATAA-GAACCAGGATAATACACTGC-AGCAGCAAAGTTTCAGCACGGATGTCTCATTTCTAGGATTTGACAAGGATGGTGATGTTAATGTACATCCATCTGTATGCGTTCCTAGTGCGCCACCACTACTTGAAACAAATGCTTTACAATACAGTGCATACAGGGAGGTGCTACAGGCAGATCCTCCAGAATGGTTACCAGATAGCTCTACCAGTGTGTGCCTGCAATGCAGTTTGCCTTTCACAGCTCTGACTCGTGGAAGGCACCATTGCCGGTTCTGTGGAGGTATTTTCTGTAAAGATTGTTCCAAGGGAAGATGCTTGATGCCCATGAAGTTCAGGCAGCGTGATCCTCAGAGAGTGTGTGATGCTTGCTACGATAGGCTCGATCCACTTCAGGGAATATTGATCAATTACAATAGCAATGCCATGCAGCCAGCAAAACATGATGTTATGGATTGGACAAGCACAAGAAGCTGGTTGAACTTG-CCTGTTGGTTTATCAATGGAGTATGAGATATACAAGGCAACAAATACACTAAATAGATATTGCCAGGTTGCTAGATTAAACCCTGAGAAGTCCATCCCATCATCTATTCTAAAGGGAGCTAAGGGGCTTGCTGTGATAACAGTTGCCAAGGCGGGTGCAGTTCTTACATACAAAGTTGGCACTGGCCTTGTAGTTGCCCGAAGATCAGATGGATCATGGTCTGCCCCATCAGCAATTGCATCTGTTGGCCTGGGATGGGGAGTTCAGTTTGGTGGCGAACTGACAGATTTTATAATTGTACTTCATGATCGTAAGGCTGTCAAGGCATTCAGCAGTCGCATGCATCTTTCTCTTGGGGCAGGATTAAGTGCAGCAGCAGGACCAATTGGCAGGGCCTTTGAAGCAGATGTTAGGGCCAGTGAAAAAGGTTCTGGGCTCTGCTACACTT-ACAGCTGTAGCAAAGGTGCCTTTGTTGGGGTCTCATTGGAAGGAAATGTCGTGACAACCAGATCAGAGACCAATCTACGCTTCTATGGCGATGCTTACTTGACCACAACTGATATCCTGTTTGGGAAGGTGGAGAAACCC-AGAGCCGCCCAGCCCCTGTACTCAGCTCTAGATGATCTATTCTCTAAAATGGTTTACTAG---TTCTACGTGTTCATGCCAAAAAAAAAAAGGAAAAAAAGAAAAGGAAAAGCTCTCCATTACTCATTGATGTACACAATATGTATATAAAGAAAAAGGTAGGAAAATGTACAGCTTTTAAGTCCTGTTCGGATGGGTCGATTTGGGTTAAAATCCCTTGCACGACTTATAGGTTCAAATGTGAAAAAGGTCCCAAAGTATTTTATAATTCAAGTACCCAAATCTGAACAGACCAATTGGATTGTGTTCCACTGATAATCTCTCGGTACACATGT-AAATATTATCATGATATTTCAGGCCCTGTTGTTACTTTATTCTGGACTTGGGCTTTCGTTTGCAAAAAAAAAAAAAA]
[+] EMBL AK071047 [TTCTCCGACGAAACCCCAATCCCCAACTCCGACGCTTCCTCCGCCCCGGCGATCGCCGCCACCCGAATCCCCCCGCGACCGCCTCCGATTGATTCGATCCGGTGATCTTGTGTTGTTGCCACATGATTGTTGTCTCTAAATGATTCTATGGGGGCCCCGAATGAAGTGACATCGTACTCTTCCCTCTCCAAAATCGATAGCAACAACCAGGGAGGTCATCTATCTAGTCTAGTTCCAGCAAACATTTACCCAGCGCAGGGTTATCTCTATGAACCGTCCCTGGAGCCAGATTTCCCATCGGAGTACGATTCTAGAGAAGATCCATTTGTTCCAACACGAGCTAGTTCAAATATCAATTTGAAGACTGTCCTAACT GGGCTGGCTGCTATTGTTTCGGGCACAAATAA GAACCAGGATAATACACTGC AGCAGCAAAGTTTCAGCACGGATGTCTCATTTCTAGGATTTGACAAGGATGGTGATGTTAATGTACATCCATCTGTATGCGTTCCTAGTGCGCCACCACTACTTGAAACAAATGCTTTACAATACAGTGCATACAGGGAGGTGCTACAGGCAGATCCTCCAGAATGGTTACCAGATAGCTCTACCAGTGTGTGCCTGCAATGCAGTTTGCCTTTCACAGCTCTGACTCGTGGAAGGCACCATTGCCGGTTCTGTGGAGGTATTTTCTGTAAAGATTGTTCCAAGGGAAGATGCTTGATGCCCATGAAGTTCAGGCAGCGTGATCCTCAGAGAGTGTGTGATGCTTGCTACGATAGGCTCGATCCACTTCAGGGAATATTGATCAATTACAATAGCAATGCCATGCAGCCAGCAAAACATGATGTTATGGATTGGACAAGCACAAGAAGCTGGTTGAACTTG CCTGTTGGTTTATCAATGGAGTATGAGATATACAAGGCAACAAATACACTAAATAGATATTGCCAGGTTGCTAGATTAAACCCTGAGAAGTCCATCCCATCATCTATTCTAAAGGGAGCTAAGGGGCTTGCTGTGATAACAGTTGCCAAGGCGGGTGCAGTTCTTACATACAAAGTTGGCACTGGCCTTGTAGTTGCCCGAAGATCAGATGGATCATGGTCTGCCCCATCAGCAATTGCATCTGTTGGCCTGGGATGGGGAGTTCAGTTTGGTGGCGAACTGACAGATTTTATAATTGTACTTCATGATCGTAAGGCTGTCAAGGCATTCAGCAGTCGCATGCATCTTTCTCTTGGGGCAGGATTAAGTGCAGCAGCAGGACCAATTGGCAGGGCCTTTGAAGCAGATGTTAGGGCCAGGGAAAAAGGTTCTGGGCTCTGCTACACTT ACAGCTGCAGCAAAGGTGCCTTTGTTGGGGTCTCATTGGAAGGAAATGTCGTGACAACCAGATCAGAGACCAATCTACGCTTCTATGGCGATGCTTACTTGACCACAACTGATATCCTGTTTGGGAAGGTGGAGAAACCC AGAGCCGCCCAGCCCCTGTACTCAGCTCTAGATGATCTATTCTCTAAAATGGTTTACTAG TTCTACGTGTTCATGCCAAAAAAAAAAAGGAAAAAAAGAAAAGGAAAAGCTCTCCATTACTCATTGATGTACACAATATGTATATAAAGAAAAAGGTAGGAAAATGTACAGCTTTTAAGTCCTGTTCGGATGGGTCGATTTGGGTTAAAATCCCTTGCACGACTTATAGGTTCAAATGTGAAAAAGGTCCCAAAGTATTTTATAATTCAAGTACCCAAATCTGAACAGACCAATTGGATTGTGTTCCACTGATAATCTCTCGGTACACATGT AAATATTATCATGATATTTCAGGCCCTGTTGT ]
[+] EMBL CB642430 [ CCCAATCCCCAACTCCGACGCTTCCTCCGCCCCGGCGATCGCCGCCACCCGAATCCCCCCGCGACCGCCTCCGATTGATTCGATCCGGTGATCTTGTGTTGTTGCCACATGATTGTTGTCTCTAAATGATTCTATGGGGGCCCCGAATGAAGTGACATCGTACTCTTCCCTCTCCAAAATCGATAGCAACAACCAGGGAGGTCATCTATCTAGTCTAGTTCCAGCAAACATTTACCCAGCGCAGGATTATCTCTATGAACCGTCCCTGGAGCCAGATTTCCCATCGGAGTACGATTCTAGAGAAGATCCATTTGTTCCAACACGAGCTAGTTCAAATATCAATTTGAAGACTGTCCTAACT GGGCTGGCTGCTATTGTTTCGGGCACAAATAA GAACCAGGATAATACACTGC AGCAGCAAAGTTTCAGCACGGATGTCTCATTTCTAGGATTTGACAAGGATGGTGATGTTAATGTACATCCATCTGTATGCGTTCCTAGTGCGCCACCACTACTTGAAACAAATGCTTTACAATACAGTGCATACAGGGAGGTGCTACAGGCAGATCCTCCAGAATGGTTACCAGATAGCTCTACCAGTGTGTGCCTGCAATGCAGTTTGCCTTTCACAGCTCTGACTCGTGGAAGGCACCATTGCCGGTTCTGTGGAGGTATTTTCTGTAAAGATTGTTCCAAGGGAAGATGCTTGATGCCCATGAAGTTCAGGCAGCGTGATCCTCAGAGAGTGTGTGATGCTTGCTACGATAGGCTCGATCCACTTCAGGGAATATTGATCAATTACAATAGCAATGCCATGCAGCCAGCAAAACATGATGTT ]
[+] EMBL CB644160 [ CCCAATCCCCAACTCCGACGCTTCCTCCGCCCCGGCGATCGCCGCCACCCGAATCCCCCCGCGACCGCCTCCGATTGATTCGATCCGGTGATCTTGTGTTGTTGCCACATGATTGTTGTCTCTAAATGATTCTATGGGGGCCCCGAATGAAGTGACATCGTACTCTTCCCTCTCCAAAATCGATAGCAACAACCAGGGAGGTCATCTATCTAGTCTAGTTCCAGCAAACATTTACCCAGCGCAGGATTATCTCTATGAACCGTCCCTGGAGCCAGATTTCCCATCGGAGTACGATTCTAGAGAAGATCCATTTGTTCCAACACGAGCTAGTTCAAATATCAATTTGAAGACTGTCCTAACT GGGCTGGCTGCTATTGTTTCGGGCACAAATAA GAACCAGGATAATACACTGC AGCAGCAAAGTTTCAGCACGGATGTCTCATTTCTAGGATTTGACAAGGATGGTGATGTTAATGTACATCCATCTGTATGCGTTCCTAGTGCGCCACCACTACTTGAAACAAATGCTTTACAATACAGTGCATACAGGGAGGTGCTACAGGCAGATCCTCCAGAATGGTTACCAGATAGCTCTACCAGTGTGTGCCTGCAATGCAGTTTGCCTTTCACAGCTCTGACTCGTGGAAGGCACCATTGCCGGTTCTGTGGAGGTATTTTCTGTAAAGATTGTTCCAAGGGAAGATGCTTGATGCCCATGAAGTTCAGGCAGCGTGATCCTCAGAGAGTGTGTGATGCTTGCTACGATAGGCTCGATCCACTTCAGGGAATATTGATCAATTACAATAGCAATGCCATGCAGCCA ]
[+] EMBL AU062478 [ CCAACTCCGACGCTTCCTCCGCCCCGGCATTCGC CCACCCGAATCCCCCCGCGACCGCCTCCGATTGATTCGATCCGGTGATCTTGTGTTGTTGCCACATGATTGTTGTCTCTAAATGATTCTATGGGGGCCCCGAATGAAGTGACATCGTACTCTTCCCTCTCCAAAATCGATAGCAACAACCAGGGAGGTCATCTATCTAGTCTAGTTCCAGCAAACATTTACCCAGCGCAGGATTATCTCTATGAACCGTCCCTGGAGCCAGATTTCCCATCGGAGTACGATTCTAGAGAAGATCCATTTGTTCCAACACGAGCTAGTTCAAATATCAATTTGAAGACTGTCCTAACTNGGGCTGGCTGCTATTGTTTCGGGCACAAATAAGGAACCAGGGTAATACACTGCAAGCAG AAAGTTTCAGCACGGATGTCTCAATTCTAG ]
[+] EMBL CB623974 [ AACTCCCATACATCCTCCGCCCCGGCGATCGCCGCCACCCGAATCCCCCCGCGACCGCCTTCGATTGATTCGATCCGG CCTCTTGTGTTGTTGCCACATGATTGTTGTCTCTAAATGATTCTATGGGGGCCCCGAATGAAGTGACATCGTACTCTTCCCTCTCCAAAATCGATAGCAACAACCAGGGAGGTCATCTATCTAGTCTAGTTCCAGCAAACATTTACCCAGCGCAGGATTATCTCTATGAACCGTCCCTGGAGCCAGATTTCCCATCGGAGTACGATTCTAGAGAAGATCCATTTGTTCCAACACGAGCTAGTTCAAATATCAATTTGAAGACTGTCCTAACT GGGCTGGCTGCTATTGTTTCGGGCACAAATAA GAACCAGGATAATACACTGC AGCAGCAAAGTTTCAGCACGGATGTCTCATTTCTAGGATTTGACAAGGATGGTGATGTTAATGTACATCCATCTGTATGCGTTCCTAGTGCGCCACCACTACTTGAAACAAATGCTTTACAATACAGTGCATACAGGGAGGTGCTACAGGCAGATCCTCCAGAATGGTTACCAGATAGCTCTACCAGTGTGTGCCTGCAATGCAGTTTGCCTTTCACAGCTCTGACTCGTGGAAGGCACCATTGCCGGTTCTGTGGAGGTATTTTCTGTAAAGATTGTTCCAAGGGAAGATGCTTGATGCCCATGAAGTTCAGGCAGCGTGATCCTCAGAGAGTGTGTGATGCTTGCTACGATAGGCTCGATCCACTTCANGGAATATTGATCAATTACAATAGCAA ]
[-] EMBL CB642431 [ GCTTGATGCCCATGAAGTTCAGGCAGCGTGATCCTCAGAGAGTGTGTGATGCTTGCTACGATAGGCTCGATCCACTTCAGGGAATATTGATCAATTACAATAGCAATGCCATGCAGCCAGCAAAACATGATGTTATGGATTGGACAAGCACAAGAAGCTGGTTGAACTTG CCTGTTGGTTTATCAATGGAGTATGAGATATACAAGGCAACAAATACACTAAATAGATATTGCCAGGTTGCTAGATTAAACCCTGAGAAGTCCATCCCATCATCTATTCTAAAGGGAGCTAAGGGGCTTGCCGTGATAACAGTTGCCAAGGCGGGTGCAGTTCTTACATACAAAGTTGGCACTGGCCTTGTAGTTGCCCGAAGATCAGATGGATCATGGTCTGCCCCATCAGCAATTGCATCTGTTGGCCTGGGATGGGGAGTTCAGTTTGGTGGCGAACTGACAGATTTTATAATTGTACTTCATGATCGTAAGGCTGTCAAGGCATTCAGCAGTCGCATGCATCTTTCTCTTGGGGCAGGATTAAGTGCAGCAGCAGGACCAATTGGCAGGGCCTTTGAAGCAGATGTTAGGGCCAGTGAAAAAGGTTCTGGGCTCTGCTACACTT ACAGCTGTAGCAAAGGTGCCTTTGTTGGGGTCTCATTGGAAGGAAATGTCGTGACAACCAGATCAGAGACCAATCTACGCTTCTATGGCGATGCTTACTTGACCACAACTGATATCCTGTTTGGGAAGGTGGAGAAACCCAAGAGCCGCCCAGCCCCTGTACTCAGCTCTAGATGATCTATTCTCTAAAATGGTTTACTAG TTCTACGT ]
[-] EMBL CB644161 [ AGTTCAGGCAGCGTGATCCTCAGAGAGTGTGTGATGCTTGCTACGATAGGCTCGATCCACTTCAGGGAATATTGATCAATTACAATAGCAATGCCATGCAGCCAGCAAAACATGATGTTATGGATTGGACAAGCACAAGAAGCTGGTTGAACTTG CCTGTTGGTTTATCAATGGAGTATGAGATATACAAGGCAACAAATACACTAAATAGATATTGCCAGGTTGCTAGATTAAACCCTGAGAAGTCCATCCCATCATCTATTCTAAAGGGAGCTAAGGGGCTTGCCGTGATAACAGTTGCCAAGGCGGGTGCAGTTCTTACATACAAAGTTGGCACTGGCCTTGTAGTTGCCCGAAGATCAGATGGATCATGGTCTGCCCCATCAGCAATTGCATCTGTTGGCCTGGGATGGGGAGTTCAGTTTGGTGGCGAACTGACAGATTTTATAATTGTACTTCATGATCGTAAGGCTGTCAAGGCATTCAGCAGTCGCATGCATCTTTCTCTTGGGGCAGGATTAAGTGCAGCAGCAGGACCAATTGGCAGGGCCTTTGAAGCAGATGTTAGGGCCAGTGAAAAAGGTTCTGGGCTCTGCTACACTT ACAGCTGTAGCAAAGGTGCCTTTGTTGGGGTCTCATTGGAAGGAAATGTCGTGACAACCAGATCAGAGACCAATCTACGCTTCTATGGCGATGCTTACTTGACCACAACTGATATCCTGTTTGGGAAGGTGGAGAAACCC AGAGCCGCCCAGCCCCTGTACTCAGCTCTAGATGATCTATTCTCTAAAATGGTTTACTAG TTCTACGT ]
[+] EMBL AU092192 [ aAANCTGGTTGAACTTGCCCTGTTGGTTTATCAATGGAGTATGAGATATAC AGGC ACCAATACACTAAATAGATATTGCCAGGTTGCTAGATT AACCCTGAGAAGTCCATCCCATCATCTATTCTAAAGGGAGCTAAGGGGCTTGCTGTGATAACAGTTGCCAAGGCGGGTGCAGTTCTTACATACAAAGTTGGCACTGGCCTTGTAGTTGCCCGAAGATCAGATGGATCATGGTCTGCCCCATCAGCAATTGCATCTGTTGGCCTGGGATGGGGAGTTCAGTTTGGTGGCGAACTGACAGATTTTATAATTGTACTTCATGATCGTAAGGCTGTCAAGGCATTCAGCAGTCGCATGCATCTTTCTCTTGGGGCAGGATTAAGTGCAGCAGCAGGACCAATTGGCAGGGCCTTTGAAGCAGATGTTAGGGCCAGTGAAAAAGGTTCTGGGCTCTGCTACACTT ACAGCTGTAGCAAAGGTGCCTTTGTTGGGGTCTCATTGGAAGGAAATGTCGTGACAACCAGATCAGAGACCAATCTACGCTTCTATGGCGATGCTTACTTGACCACAACTGATATCCTGTTTGGGAAGGTGGAGAAACCC AGAGCCGCCCAGCCCCTGTACTCAGCTCTAGATGATCTATTCTCTAAAATGGTTTACTAG TTCTACGTGTTCATGCCAAAAAAAAAAA AAAA ]
[-] EMBL CB623975 [ GCAATTGCATCTGTTGGCCTGGGAGGGGGAGTTCAGTTTGGTGGCGAACTGACAGATTTTATAATTGTACTTCATGATCGTAAGGCTGTCAAGGCATTCAGCAGTCGCATGCATCTTTTTCTTGGGGCAGGATTAAGTGCAGCAGCAGGACCAATTGGCAGGGCCTTTGAAGCAGATGTTAGGGCCAGTGAAAAAGGTTTTGGGCTTTGTTACACTT ACAGCTGTAGCAAAGGTGCCTTTGTTGGGGTCTCATTGGAAGGAAATGTCGTGCCAACAAGATCAGAGACCAATTTACGCTTTTATGGCGATGGTTACTTGCCCACAACTGATATCCTGTTTGGGAAGGTGGAGAAACCC AGAGCCGCCCAGCCCCTGTAATCAGCTTTAGAGGATTTATTTTTTAAAAGGGTTTACTAGTTTTTTTACGTGTTCATGCC AAAAAAAAAAGGAAAAAAAGAAAAGGAAAAGCTTTCCATTACTCATTGATGTACGCAATATGTATATAAAAAAAAAGGTAGGAAAATGTACAGCTTTTAAGTCCTGTTCGGATGGGTCGATTTGGGTTAAAATCCCTTGCACGACTTATAGGTTCAAATGTGAAAAAGGTCCCAAAGTATTTTATAATTCAAGTACCCAAATTTGAACAGACCAATTGGATTGTGTTCCACTGATAATCTCTCGGTACACATGTAAAATTTTATCATGATATTTGGGGCCCTGT ]
[-] EMBL CA763286 [ AGGCTGTCAAGGCATTCAGCAGTNGCATGCATCTTTCTCTTGGGCCAGGATT AGTCCAGCAGCAGGCCCAATTGGCAGGGCCTTTAACCCAGATGTTAGGGGCAGTGAAAAAGGTTTTGGGCTCTGCTACACTTCAC GCTGTAGCAAAGGTGCCTTTGTTGGGGTCTCATCGGAAGGAAATGTCGTGACAACAAGATCAGAGACCAATTTACGCTTCTATGGCGATGCTTACTTGACCACAACTGATATCCTGTTTGGGAAGGTGGAGAAACCC AGAGCCGCCCAGCCCCTGTACTCAGCTCTAGATGATCTATTCTCTAAAATGGTTTACTAGTTTTTCTACGTGTTCATGCC AAAAAAAAAGGAAAAAAAGAAAAGGAAAAGCTCTCCATTACTCATTGATGTACACAATATGTATATAAA AAAAAGGTAGGAAAATGTACAGCTTTTAAGTCCTGTTTGGATGGGTCGATTTGGGTTAAAATCCCTTGCACGACTTATAGGTTCAAATGTGAAAAAGGTCCCAAAGTATTTTATAATTCAAGTACCCAAATCTGAACAGACCAATTGGATTGTGTTCCACTGATAATCTCTCGGTACACATGT AAATATTATCATGATATTTCAGGCCCTGTTGTTACTTTATTCTGGACTTGGGCTTTCGTTTGCAAAAAAAAAAAAAA]
[+] EMBL AU076219 [ aaGCAGGGCCTTTGAAGCAGATGTTAGGGCCAGTGAAAAAGGTTCTGGGCTCTGCTACACTT ACAGCTGTAGCAAAGGTGCCTTTGTTGGGGTCTCATTGGAAGGAAATGTCGTGACAACCAGATCAGAGACCAATCTACGCTTCTATGGCGATGCTTACTTGACCACAACTGATATCCTGTTTGGGAAGGTGGAGAAACCC AGAGCCGCCCAGCCCCTGTACTCAGCTCTAGATGATCTATTCTCTAAAATGGTTTACTAG TTCTACGTGTTCATGCCAAAAAAAAAAAGGAAAAAAAGAAAAGGAAAAGCTCTCCATTACTCATTGATGTACACAATATGTATATAAAGAAAAAGGTAGGAAAATGTACAGCTTTTAAGTCCTGTTCGGATGGGTCGATTTGGGTTAAAATCCCTTGCACGACTTATAGGTTCAAATGTGAAAAAGGTCCCAAAGTATTTTATAATTCAAGTACCCAAATCTGAACAGACCAATTGGATTGTGTTCCACTGATAAnaa ]
[+] EMBL BI799826 [ AAGGAAAAGCTCTCCATTACTCATTGATGTACACAATATGTATATAAAAATAAAGGTAGGAAAATGTACAGCTTTTAAGTCCTGTTCGGATGGGTCGATTTGGGTTAAAATCCCTTGCACGACTTATAGGTTCAAATGTGAAAAAGGTCCCAAAGTATTTTATAATTCAAGTACCCAAATCTGAACAGACCCATTGGATTGTGTTCCCCTGATAATCTCTCGGTACACATGT AAATATTATCATGATATTTCAaaaa ]
clustalw multiple alignements is not computed in this case |
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||