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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13354#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 610 fasta sequence
[TTCCTCTTCGCTCCGTCTCTCCCCACCCCACCTCCGCCCCGAGACGACGAGACCCAGCGAGCGATCCCGAGGGAAGAAAGAGATCGAGAGGGAAGGGAAGGGAGAGGATCGGAGAGCTTTCCGCCGGCCATGGGGTTCTGGGTGACCACGCTCATCTTCCTCCTCGCCGGCTTCGTCGCCTCCCTCTTCTCGCTGCTCTGCTGCAACCGCGGGCCGTCGACCAACCTATTCCATTTGACCTTGGTTATTACAGCAACGGTTTGCTGTTGGATGATGTGGGCAATCGTCTATCTTGCGCAGCTGAAGCCACTGATCAA-CCCTATCCTAAGCGGCGAGT-GAGCTG-TGTTAC-AATTTGAAGT-CTGCTC-ATGCTGTATCACTATTT-AGTTGAGGATTTCTATTCATTTTGGCACGACTGAAATAAAGAATTGTTGTGAGATTTTGGAACACTTCCTCTAGACACTAGAGGATGCCCACTGTGATTAGTGTATGCAATTATATTATATACACAATAATCGGATCAATGACCTTGTCCATTCAAACTTCCAAAGTTTACCCAAGATAAATTTCTGCTTCCAGCTCTAGAGAACAAAAGTTCTTAAAAAAAAAAAAA]
[+] EMBL CF314739 [TTCCTCTTCGCTCCGTCTCTCCCCACCCCACCTCCGCCCCGAGACGACGAGACCCAGCGAGCGATCCCGAGGGAAGAAAGAGATCGAGAGGGAAGGGAAGGGAGAGGATCGGAGAGCTTTCCGCCGGCCATGGGGTTCTGGGTGACCACGCTCATCTTCCTCCTCGCCGGCTTCGTCGCCTCCCTCTTCTCGCTGCTCTGCTGCAACCGCGGGCCGTCGACCAACCTATTCCATTTGACCTTGGTTATTACAGCAACGGTTTGCTGTTGGATGATGTGGGCAATCGTCTATCTTGCGCAGCTGAAGCCACTGATCAA CCCTATCCTAAGCGGCGAGT GAGCTG TGTTAC AATTTGAAGT CTGCTC ATGCTGTATCACTATTT AGTTGAGGATTTCTATTCATTTTGGCACGACTGAAATAAAGAAT ]
[+] EMBL AK120899 [ GTCTCTCCCCACCCCACCTCCGCCCCGAGACGACGAGACCCAGCGAGCGATCCCGAGGGAAGAAAGAGATCGAGAGGGAAGGGAAGGGAGAGGATCGGAGAGCTTTCCGCCGGCCATGGGGTTCTGGGTGACCACGCTCATCTTCCTCCTCGCCGGCTTCGTCGCCTCCCTCTTCTCGCTGCTCTGCTGCAACCGCGGGCCGTCGACCAACCTATTCCATTTGACCTTGGTTATTACAGCAACGGTTTGCTGTTGGATGATGTGGGCAATCGTCTATCTTGCGCAGCTGAAGCCACTGATCAA CCCTATCCTAAGCGGCGAGT GAGCTG TGTTAC AATTTGAAGT CTGCTC ATGCTGTATCACTATTT AGTTGAGGATTTCTATTCATTTTGGCACGACTGAAATAAAGAATTGTTGTGAGATTTTGGAACACTTCCTCTAGACACTAGAGGATGCCCACTGTGATTAGTGTATGCAATTATATTATATACACAATAATCGGATCAATGACCTTGTCCATTCAAACTTCCAAAGTTTACCCAAGATAAATTTCTGC ]
[+] EMBL CF197306 [ CACCTCCGCCCCGAGACGACGAGACCCAGCGAGCGATCCCGAGGGAAGAAAGAGATCGAGAGGGAAGGGAAGGGAGAGGATCGGAGAGCTTTCCGCCGGCCATGGGGTTCTGGGTGACCACGCTCATCTTCCTCCTCGCCGGCTTCGTCGCCTCCCTCTTCTCGCTGCTCTGCTGCAACCGCGGGCCGTCGACCAACCTATTCCATTTGACCTTGGTTATTACAGCAACGGTTTGCTGTTGGATGATGTGGGCAATCGTCTATCTTGCGCAGCTGAAGCCACTGATCAA CCCTATCCTAAGCGGCGAGT GAGCTG TGTTAC AATTTGAAGT CTGCTC ATGCTGTATCACTATTT AGTTGAGGATTTCTATTCATTTTGGCACGACTGAAATAAAGAATTGTTGTGAGATTTTGGAACACTTCCTCTAGACACTAGAGGATGCCCACTGTGATTAGTGTATGCAATTATATTATATACACAATAATCGGATCAATGACCTTGTNNANTCAA ]
[+] EMBL CB682598 [ GCCCCGAGACGACGAGACCCAGCGAGCGATCCCGAGGGAAGAAAGAGATCGAGAGGGAAGGGAAGGGAGAGGATCGGAGAGCTTTCCGCCGGCCATGGGGTTCTGGGTGACCACGCTCATCTTCCTCCTCGCCGGCTTCGTCGCCTCCCTCTTCTCGCTGCTCTGCTGCAACCGCGGGCCGTCGACCAACCTATTCCATTTGACCTTGGTTATTACAGCAACGGTTTGCTGTTGGATGATGTGGGCAATCGTCTATCTTGCGCAGCTGAAGCCACTGATCAA CCCTATCCTAAGCGGCGAGT GAGCTG TGTTAC AATTTGAAGT CTGCTC ATGCTGTATCACTATTT AGTTGAGGATTTCTATTCATTTTGGCACGACTGAAATAAAGAATTGTTGTGAGATTTTGGAACACTTCCTCTAGACACTAGAGGATGCCCACTGTGATTAGTGTATGCAATTATATTATATACACAATAATCGGATCAATGACCTTGTCCATTCAAACTTCCAAAGTT ]
[+] EMBL AU091798 [ GACGACGAGACCCAGCGAGCNATCCCNAGGGAAGAAAGAGATCGANAGGGAAGGGAAGGGAGAGGATCGGAGAGCTTTCCGCCGGCCATGGGGTTCTGGGTGACCACGCTCATCTTCCTCCTCGCCGGCTTCGTCGCCTCCCTCTTCTCGCTGCTCTGCTGCAACCGCGGGCCGTCGACCAACCTATTCCATTTGACCTTGGTNATTACAGCAACGGTTTGCTGTTGGATGATGTGGGCAATCGTCTATCTTGCGCA NTGAAGCCACTGATCAA CCCTATCCTAAGCGGCGAGTAAAGCTGTTGTTAC AATTTGAAGTCCTGCTCAATGCTGTATCACTATTTAAGTTGAGGATTTCTA ]
[+] EMBL OS1180A [ GCGAGCGATCCCGAGGGAAGAAAGAGATCGAGAGGGAAGGGAAGGGAGAGGATCGGAGAGCTTTCCGCCGGCCATGGGGTTCTGGGTGACCACGCTCATCTTCCTCCTCGCCGGCTTCGTCGNCTCCCTCTTCTCGNTGCTCTGCTGCAACCGCGGGCCGTCGACCAACCTATTCCATTTGACCTTGGTTATTACAGCAACGGTTTGCTGTTGGATGATGTGGGCAATCGTCTATNTTGCGCA NTGAAGCCACTGATCAA CCCTATCCTAAGCGGCGAGT NAGCTG TGTTACAAATTTGAAGT CTGCTC ATGCTGTATCACTATTT AGTTGAGGATTTCTATTCATTNTGG ACGACTNAAATAAAGAATNGTTGTCAGATT ]
[+] EMBL CA763686 [ gacgagacaAGGGGAGAAAGAGATCGAGAGGGAAGGGAAGGGAGAGGATCGGAGAGCTTTCCGCCGGCCATGGGGTTCTGGGTGACCACGCTCATCTTCCTCCTCGCCGGCTTCGTCGCCTCCCTCTTCTCGCTGCTCTGCTGCAACCGCGGGCCGTCGACCAACCTATTCCATTTGACCTTGGTTATTACAGCAACGGTTTGCTGTTGGATGATGTGGGCAATCGTCTATCTTGCGCAGCTGAAGCCACTGATCAA CCCTATCCTAAGCGGCGAGT GAGCTG TGTTAC AATTTGAAGT CTGCTC ATGCTGTATCACTATTT AGTTGAGGATTTCTATTCATTTTGGCACGACTGAAATAAAGAATTGTTGTGAGATTTTGGAACACTTCCTCTAGACACTAGAGGATGCCCACTGTGATTAGTGTATGCAATTATATTATATACCCAATAATCGGGTCAATGACTTTGTCCATTCAAACTTCCAAAGTTTACCCAAGATAAATTTCTGCTTCCAGCTCTAGAGAACAAAAGTTCTTAAAAAAAAAAAAA]
[+] EMBL C97315 [ tgCCCTGGTTATTACAGCAACGNTTTGCTGTTGGATGATGTGGGCAATCGTCTATCTTGCGCAGTTGAAGCCACTGNTCAACCCCTATCNTAAGCGNCGAGT GAGCTG TGTTAC AATTTGAAGT CTGCTC ATGCTGTATCACTATTT AGTTGAGGATTTCTATTCATTTTGGCACGACTGAAATAAAGAATTGTTGTGAGATTTTGGAACACTTCCTCTAGACACTAGAGGATGCCCACTGTGATTAGTGTATGCAATTATATTATATACACNNTAATCGGATCAATGACCTTGTCCATTCAAACTTCCAAAGTTTACCCAAGATAAATTTCTGCTTCCAGCTCTAGAGAGCAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_13354#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 587 fasta sequence
[GGAGTAGAAACTTCTTTCCGTCTCTCCCCACCCCACCTCCGCCCCGAGACGACGAGACCCAGCGAGCGATCCCGAGGGAAGAAAGAGATCGAGAGGGAAGGGAAGGGAGAGGATCGGAGAGCTTTCCGCCGGCCATGGGGTTCTGGGTGACCACGCTCATCTTCCTCCTCGCCGGCTTCGTCGCCTCCCTCTTCTCGCTGCTCTGCTGCAACCGCGGGCCGTCGACCAACCTATTCCATTTGACCTTGGTTATTACAGCAACGGTTTGCTGTTGGATGATGTGGGCAATCGTCTATCTTGCGCAGCTGAAGCCACTGATCAACCCTATCCTAAGCGGCGAGTGAGCTGTGTTACAATTTGAAGTCTGCTCATGCTGTATCACTATTTAGTTGAGGATTTTTATTCATTTTGGCACGACTGAAATAAAGAATTGTTGTGAGATTTTGGAACACTTCCTTTAGACACTAAAGGATGCCCCCTGTGATTAGTGTATGCAATTATATTATATACCCAATAATCGGATCAATGACCTTGTCCATTCAAACTTCCAAAGTTTACCCAAGATAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF299832 [GGAGTAGAAACTTCTTTCCGTCTCTCCCCACCCCACCTCCGCCCCGAGACGACGAGACCCAGCGAGCGATCCCGAGGGAAGAAAGAGATCGAGAGGGAAGGGAAGGGAGAGGATCGGAGAGCTTTCCGCCGGCCATGGGGTTCTGGGTGACCACGCTCATCTTCCTCCTCGCCGGCTTCGTCGCCTCCCTCTTCTCGCTGCTCTGCTGCAACCGCGGGCCGTCGACCAACCTATTCCATTTGACCTTGGTTATTACAGCAACGGTTTGCTGTTGGATGATGTGGGCAATCGTCTATCTTGCGCAGCTGAAGCCACTGATCAACCCTATCCTAAGCGGCGAGTGAGCTGTGTTACAATTTGAAGTCTGCTCATGC ]
[+] EMBL AA751440 [ CGCCGGCCATGGGGTTCTGGGTGACCACGCTCATCTTCCTCCTCGCCGGCTTCGTCGCCTCCCTCTTCTCGCTGCTCTGCTGCAACCGCGGGCCGTCGACCAACCTATTCCATTTGACCTTGGTTATTACAGCAACGGTTTGCTGTTGGATGATGTGGGCAATCGTCTATCTTGCGCAGCTGAAGCCACTGATCAACCCTATCCTAAGCGGCGAGTGAGCTGTG ]
[-] EMBL CF299831 [ GCCGTCGACCAACCTATTCCATTTGACCTTGGTTATTACAGCAACGGTTTGCTGTTGGATGATGTGGGCAATCGTTTATCTTGCGCAGCTGAAGCCACTGATCAACCCTATCTTAAGCGGCGAGTGAGCTGTGTTACAATTTGAAGTCTGCTCATGCTGTATCACTATTTAGTTGAGGATTTTTATTCATTTTGGCACGACTGAAATAAAGAATTGTTGTGAGATTTTGGAACACTTCCTTTAGACACTAAAGGATGCCCCCTGTGATTAGTGTATGCAATTATATTATATACCCAATAATCGGATCAATGACCTTGTCCATTCAAACTTCCAAAGTTTACCCAAGATAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_13354#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 473 fasta sequence
[AGAGGACGAGACAAGGGGTTCTGGGTGACCACGCTCATCCTCCTCCTGGCCGGGTTGGTCGCCTCCCTCTTCTCGCTGCTTTGCTGCAACCGCGGGCCGTCGACCAACCTATTCCATTTGACCTTGGTTATTACAGCAACGGTTTGCTGTTGGATGATGTGGGCAATTGTCTATCTTGCGCAGCTGAAGCCACTGATCAACCCTATCCTAAGCGGCGAGTGAGCTGTGTTACAATTTGAAGTCTGCTCATGCTGTATCACTATTTAGGTGAGGATTTCTATTCATTTTGGCACGACTGAAATAAAGAATTGTTGTGAGATTTTGGAACACTTCCTCTAGACACTAGAGGATGCCCACTGTGATTAGTGTATGCAATTATATTATATACCCAATAATCGGATCAATGACCTTGTCCATTCAAACTTCCAAAGTTTACCCAAGATAAATTTCTGCTTCCAAAAAAAAAAAAAAAA]
[-] EMBL CA763685 [AGAGGACGAGACAAGGGGTTCTGGGTGACCACGCTCATCCTCCTCCTGGCCGGGTTGGTCGCCTCCCTCTTCTCGCTGCTTTGCTGCAACCGCGGGCCGTCGACCAACCTATTCCATTTGACCTTGGTTATTACAGCAACGGTTTGCTGTTGGATGATGTGGGCAATTGTCTATCTTGCGCAGCTGAAGCCACTGATCAACCCTATCCTAAGCGGCGAGTGAGCTGTGTTACAATTTGAAGTCTGCTCATGCTGTATCACTATTTAGGTGAGGATTTCTATTCATTTTGGCACGACTGAAATAAAGAATTGTTGTGAGATTTTGGAACACTTCCTCTAGACACTAGAGGATGCCCACTGTGATTAGTGTATGCAATTATATTATATACCCAATAATCGGATCAATGACCTTGTCCATTCAAACTTCCAAAGTTTACCCAAGATAAATTTCTGCTTCCAAAAAAAAAAAAAAAA]
consensusID : consensus_13354#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence
[GGGCTCATCTTCCTCCTCGCCGGCTTCGTCGCCTCCCTCTTCTCGCTGCTCTGCTGCAACCGCGGGCCGTCGACCAACCTGTACGCTCTTCCCCCCCGCTGATTCTCTTCAGATAGCTGCTGATCTGGTGTGGTGTGATTGTGATCGCCTGTATGCCGCCTGGAGCTTTCGGATCGGGGCGGGCGCTATTCGGGCGGATTTGACCCGCCGGATGGTGGTTTTGATCTAGATTTGGGCGTATTGTGTAGGGCTAAGGATTTCCTCTATTGGTAGATTTCTCGTTGAGATTGCGTCGTCTTTTCGATCGGATAACGGTTGAAACGGTTGGATCGATGGGGGTAGCGGCTGATCTTAGCCCATGTTCAGTAAAAGAAGTGACTTCGTGCGAAAACCCCCAAATTTGTTCAATCTTTACCCTATGTTCCTCTCTTAAGATGAAAT]
[+] EMBL CF303367 [GGGCTCATCTTCCTCCTCGCCGGCTTCGTCGCCTCCCTCTTCTCGCTGCTCTGCTGCAACCGCGGGCCGTCGACCAACCTGTACGCTCTTCCCCCCCGCTGATTCTCTTCAGATAGCTGCTGATCTGGTGTGGTGTGATTGTGATCGCCTGTATGCCGCCTGGAGCTTTCGGATCGGGGCGGGCGCTATTCGGGCGGATTTGACCCGCCGGATGGTGGTTTTGATCTAGATTTGGGCGTATTGTGTAGGGCTAAGGATTTCCTCTATTGGTAGATTTCTCGTTGAGATTGCGTCGTCTTTTCGATCGGATAACGGTTGAAACGGTTGGATCGATGGGGGTAGCGGCTGATCTTAGCCCATGTTCAGTAAAAGAAGTGACTTCGTGCGAAAACCCCCAAATTTGTTCAATCTTTACCCTATGTTCCTCTCTTAAGATGAAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13354#1 GGAGTAGAAACTTCTTTCCGTCTCTCCCCACCCCACCTCCGCCCCGAGACGACGAGACCC 60
consensus_13354#2 ------------------------------------------------------------
consensus_13354#0 -----TTCCTCTTCGCTCCGTCTCTCCCCACCCCACCTCCGCCCCGAGACGACGAGACCC 55
consensus_13354#3 ------------------------------------------------------------
consensus_13354#1 AGCGAGCGATCCCGAGGGAAGAAAGAGATCGAGAGGGAAGGGAAGGGAGAGGATCGGAGA 120
consensus_13354#2 ---------------------------------------------------------AGA 3
consensus_13354#0 AGCGAGCGATCCCGAGGGAAGAAAGAGATCGAGAGGGAAGGGAAGGGAGAGGATCGGAGA 115
consensus_13354#3 ------------------------------------------------------------
consensus_13354#1 GCTTTCCGCCGGCCATGGGGTTCTGGGTGACCACGCTCATCTTCCTCCTCGCCGGCTTCG 180
consensus_13354#2 GG-----ACGAGACAAGGGGTTCTGGGTGACCACGCTCATCCTCCTCCTGGCCGGGTTGG 58
consensus_13354#0 GCTTTCCGCCGGCCATGGGGTTCTGGGTGACCACGCTCATCTTCCTCCTCGCCGGCTTCG 175
consensus_13354#3 --------------------------------GGGCTCATCTTCCTCCTCGCCGGCTTCG 28
******* ******* ***** ** *
consensus_13354#1 TCGCCTCCCTCTTCTCGCTGCTCTGCTGCAACCGCGGGCCGTCGACCAACCTATTC--CA 238
consensus_13354#2 TCGCCTCCCTCTTCTCGCTGCTTTGCTGCAACCGCGGGCCGTCGACCAACCTATTC--CA 116
consensus_13354#0 TCGCCTCCCTCTTCTCGCTGCTCTGCTGCAACCGCGGGCCGTCGACCAACCTATTC--CA 233
consensus_13354#3 TCGCCTCCCTCTTCTCGCTGCTCTGCTGCAACCGCGGGCCGTCGACCAACCTGTACGCTC 88
********************** ***************************** * *
consensus_13354#1 TTTGACCTTGGTTATT--------ACAGCAAC-GGTTTGCTGTTGGATGAT-GTGGGCAA 288
consensus_13354#2 TTTGACCTTGGTTATT--------ACAGCAAC-GGTTTGCTGTTGGATGAT-GTGGGCAA 166
consensus_13354#0 TTTGACCTTGGTTATT--------ACAGCAAC-GGTTTGCTGTTGGATGAT-GTGGGCAA 283
consensus_13354#3 TTCCCCCCCGCTGATTCTCTTCAGATAGCTGCTGATCTGGTGTGGTGTGATTGTGATCGC 148
** ** * * *** * *** * * * ** *** * **** *** *
consensus_13354#1 TCGTCTATCTTGCGCAGCTGAAGCCACTGATCAACCCTATCCTAAGCGG--CGAGTGAGC 346
consensus_13354#2 TTGTCTATCTTGCGCAGCTGAAGCCACTGATCAACCCTATCCTAAGCGG--CGAGTGAGC 224
consensus_13354#0 TCGTCTATCTTGCGCAGCTGAAGCCACTGATCAACCCTATCCTAAGCGG--CGAGTGAGC 341
consensus_13354#3 CTGTATGCCGCCTGGAGCTTTCGGATCGGGGCGGGCGCTATTCGGGCGGATTTGACCCGC 208
** * * * **** * * * * * **** **
consensus_13354#1 TGTGTTACAATTTGAAGTCTGCTCATGCTGTATCACTATTTAGTTGAGGATTTTTATTCA 406
consensus_13354#2 TGTGTTACAATTTGAAGTCTGCTCATGCTGTATCACTATTTAGGTGAGGATTTCTATTCA 284
consensus_13354#0 TGTGTTACAATTTGAAGTCTGCTCATGCTGTATCACTATTTAGTTGAGGATTTCTATTCA 401
consensus_13354#3 CGGATGGTGGTTTTGATCTAGATTTGGGCGTATTG-TGTAGGGCTAAGGATTTCCTCT-- 265
* * *** * * * * **** * * * * ******* *
consensus_13354#1 TTTTGGCACGACTGAAATAAAGAATTGTTGTGAGATTTTGGAACACTTCCTTTAGACACT 466
consensus_13354#2 TTTTGGCACGACTGAAATAAAGAATTGTTGTGAGATTTTGGAACACTTCCTCTAGACACT 344
consensus_13354#0 TTTTGGCACGACTGAAATAAAGAATTGTTGTGAGATTTTGGAACACTTCCTCTAGACACT 461
consensus_13354#3 -ATTGGTAGATTTCTCGTTGAGA-TTGCGTCGTCTTTTCGATCGGATAACGGTTGAAACG 323
**** * * * *** *** * *** * * * * ** **
consensus_13354#1 AAAGGATGCCCCCTGTGATTAGTGTATGCAATTATATTATATACCCAATAATCGGATCAA 526
consensus_13354#2 AGAGGATGCCCACTGTGATTAGTGTATGCAATTATATTATATACCCAATAATCGGATCAA 404
consensus_13354#0 AGAGGATGCCCACTGTGATTAGTGTATGCAATTATATTATATACACAATAATCGGATCAA 521
consensus_13354#3 GTTGGAT---CGATGGGGGTAGCGGCTG--ATCTTAGCCCATGTTCAGTAAAAGAA---G 375
**** * ** * *** * ** ** ** ** ** *** * *
consensus_13354#1 TGACCTTGTCCATTCAAACTTCCAAAGTTTACCCAAGATAAAAAA--------AAAAAAA 578
consensus_13354#2 TGACCTTGTCCATTCAAACTTCCAAAGTTTACCCAAGATAAATTTCTGCTTCCAAAAAAA 464
consensus_13354#0 TGACCTTGTCCATTCAAACTTCCAAAGTTTACCCAAGATAAATTTCTGCTTCCAGCTCTA 581
consensus_13354#3 TGACTTCGTGCG---AAAACCCCCAAATTTGTTCAATCTTTACCCTATGTTCCTCTCTTA 432
**** * ** * *** ** ** *** *** * * *
consensus_13354#1 AAAAAAAAA-------------------- 587
consensus_13354#2 AAAAAAAAA-------------------- 473
consensus_13354#0 GAGAACAAAAGTTCTTAAAAAAAAAAAAA 610
consensus_13354#3 AGATGAAAT-------------------- 441
**
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||