cluster # 13365

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Oryza sativa
cluster # 13365 cluster # 13365 Sequences # 13 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13365#0 length = 1516 sequences # 10

consensus_13365#1 length = 531 sequences # 1
consensus_13365#2 length = 432 sequences # 2

consensusID : consensus_13365#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1516
fasta sequence

                              [CTCGCCTCCTCCTACCGCACCTACCTCCCTCCCTCCTCCTCTTCGATCTCACAATCTCCTTGTTCGCGGAACCGAAAATGCAGTCGAGGCACAGGGTGTTCGCGGAGGACCTGCTCCTGCCGCGGGAGGCGGAAGGGGAGGACCACTTCGACCGCGTCCCGGACTCGCTCGTGCTCCTCATCTTCAACCGCCTCGCCGACGCGCGCTCGCTGGGGCGGTGCTCGGCCGTGTCCAAGCGGTTCAACTCGCTCGTGCCGCTCG-TGGACGACGCCTGCCTCCGCATCGACCGCGTCATCACCGACGCGGCCGACGCCGACGACGCGCTCGGCCTCGCCGGCCCGCGCCCCGCCGGCCGCGGGGTGCTGTCGCACCTCCTCAAGGCGATGCTGCTCGCCGTGCTCAAGCCGTTCGGGCACTGCGACGCCGGGGTCAGGGGTGGCGGTGGTGGGGAGCGCGCGGGGAAGCACGGCGGC-GGCGGCGGCGGCTGCGGCGCGCAGCAGCACCACTCGCCGGCGCAGGTGCTGAAGAACTTCAGCAGCATCCGGAACCTCCGGATGGAGCTCCCCGTCTCCGACGTCGGCACCGACGACGGGGTGCTGCTCAGGTGGAAGGCCGTGTTCGGGAGCACCCTCCAGAGCTGCGTCATCCTCGGCGGCACCAGGGTGGACCGGGCCGCCGCCCCCGCCGCGGCGGCGGCGACCGCCACCGCCGCCGGGGACAGCGAGGCCTCGCAGGGTGACGACACCGGGAGCATCCCGGAGTCGTTCTACACCAACGGCGGGCTCAAGCTGCGCGTGGTGTGGACCATCAGCTCCCTCATCGCCGCGGCCACAAGGCACTACCTCCTCCGCGAGATCGTCAAGGAGCACCCCACGCTGGAGCGGGTGGCGCTCACGGACGCGCACGGCCAGGGCACGCTCAGCATGGGGCGCGACCAGATCAGGGAGTTCCGCGACAAGCCGCTCGCCGCCGCCGCCGCGGCCAACCGCACCCAGGTCCCCGCCTGCAACATGAAGCTCCGGTACGCGCCGATGCTCGAGCTCTCCGACGGCACGCGGATCCAGGGCGCCACGCTCGTCGTCATCAAGCCCGTCGGCGAGGCCGGCGGAATCGGCGGCGGCAGGAAGGAGCTCGACGAGTTCGTCGCCGACGCATTCGACGGCCCGTACAGGGAGGCCGTCAGCGCGCTCAGCAAGCGCCGCACCTACCTGCTAGAGATGAACGGCTTCTGAGAGCGTAGAGTTGAGAACTTGAGATCGCCACCCACCACCATGGCCCGTGCAGAGATCGCTCTGCTCTCTTCGCTTCAGCTGATCAGCTATTCAGCTCAGCTCGATTCAGTGGCACACCGAGGTGTTCGTCCATGTTGTAACAGCGATCGTGTGTCTCCTCGACTTTTCGATACTGCCTTAGCATCATCCTCGCAACAAATAATGGAATTAGAAATTTGGAATGCTTCACTTGGTTCTGTCCATTTCATGAATCGACAAAATGGAATTAAGCAAAAAAAAAAGGA]

[+] EMBL AK071172             [CTCGCCTCCTCCTACCGCACCTACCTCCCTCCCTCCTCCTCTTCGATCTCACAATCTCCTTGTTCGCGGAACCGAAAATGCAGTCGAGGCACAGGGTGTTCGCGGAGGACCTGCTCCTGCCGCGGGAGGCGGAAGGGGAGGACCACTTCGACCGCGTCCCGGACTCGCTCGTGCTCCTCATCTTCAACCGCCTCGCCGACGCGCGCTCGCTGGGGCGGTGCTCGGCCGTGTCCAAGCGGTTCAACTCGCTCGTGCCGCTCG TGGACGACGCCTGCCTCCGCATCGACCGCGTCATCACCGACGCGGCCGACGCCGACGACGCGCTCGGCCTCGCCGGCCCGCGCCCCGCCGGCCGCGGGGTGCTGTCGCACCTCCTCAAGGCGATGCTGCTCGCCGTGCTCAAGCCGTTCGGGCACTGCGACGCCGGGGTCAGGGGTGGCGGTGGTGGGGAGCGCGCGGGGAAGCACGGCGGC GGCGGCGGCGGCTGCGGCGCGCAGCAGCACCACTCGCCGGCGCAGGTGCTGAAGAACTTCAGCAGCATCCGGAACCTCCGGATGGAGCTCCCCGTCTCCGACGTCGGCACCGACGACGGGGTGCTGCTCAGGTGGAAGGCCGTGTTCGGGAGCACCCTCCAGAGCTGCGTCATCCTCGGCGGCACCAGGGTGGACCGGGCCGCCGCCCCCGCCGCGGCGGCGGCGACCGCCACCGCCGCCGGGGACAGCGAGGCCTCGCAGGGTGACGACACCGGGAGCATCCCGGAGTCGTTCTACACCAACGGCGGGCTCAAGCTGCGCGTGGTGTGGACCATCAGCTCCCTCATCGCCGCGGCCACAAGGCACTACCTCCTCCGCGAGATCGTCAAGGAGCACCCCACGCTGGAGCGGGTGGCGCTCACGGACGCGCACGGCCAGGGCACGCTCAGCATGGGGCGCGACCAGATCAGGGAGTTCCGCGACAAGCCGCTCGCCGCCGCCGCCGCGGCCAACCGCACCCAGGTCCCCGCCTGCAACATGAAGCTCCGGTACGCGCCGATGCTCGAGCTCTCCGACGGCACGCGGATCCAGGGCGCCACGCTCGTCGTCATCAAGCCCGTCGGCGAGGCCGGCGGAATCGGCGGCGGCAGGAAGGAGCTCGACGAGTTCGTCGCCGACGCATTCGACGGCCCGTACAGGGAGGCCGTCAGCGCGCTCAGCAAGCGCCGCACCTACCTGCTAGAGATGAACGGCTTCTGAGAGCGTAGAGTTGAGAACTTGAGATCGCCACCCACCACCATGGCCCGTGCAGAGATCGCTCTGCTCTCTTCGCTTCAGCTGATCAGCTATTCAGCTCAGCTCGATTCAGTGGCACACCGAGGTGTTCGTCCATGTTGTAACAGCGATCGTGTGTCTCCTCGACTTTTCGATACTGCCTTAGCATCATCCTCGCAACAAATAATGGAATTAGAAATTTGGAATGCTTCACTTGGTTCTGTCCATTTCATGAATCGACA                           ]
[+] EMBL CB668090             [                          CCCTCCCTCCTCCTCTTCGATCTCACAATCTCCTTGTTCGCGGAACCGAAAATGCAGTCGAGGCACAGGGTGTTCGCGGAGGACCTGCTCCTGCCGCGGGAGGCGGAAGGGGAGGACCACTTCGACCGCGTCCCGGACTCGCTCGTGCTCCTCATCTTCAACCGCCTCGCCGACGCGCGCTCGCTGGGGCGGTGCTCGGCCGTGTCCAAGCGGTTCAACTCGCTCGTGCCGCTCG TGGACGACGCCTGCCTCCGCATCGACCGCGTCATCACCGACGCGGCCGACGCCGACGACGCGCTCGGCCTCGCCGGCCCGCGCCCCGCCGGCCGCGGGGTGCTGTCGCACCTCCTCAAGGCGATGCTGCTCGCCGTGCTCAAGCCGTTCGGGCACTGCGACGCCGGGGTCAGGGGTGGCGGTGGTGGGGAGCGCGCGGGGAATCACGGCGGCTGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CB668844             [                          CCCTCCCTCCTCCTCTTCGATCTCACAATCTCCTTGTTCGCGGAACCGAAAATGCAGTCGAGGCACAGGGTGTTCGCGGAGGACCTGCTCCTGCCGCGGGAGGCGGAAGGGGAGGACCACTTCGACCGCGTCCCGGACTCGCTCGTGCTCCTCATCTTCAACCGCCTCGCCGACGCGCGCTCGCTGGGGCGGTGCTCGGCCGTGTCCAAGCGGTTCAACTCGCTCGTGCCGCTCG TGGACGACGCCTGCCTCCGCATCGACCGCGTCATCACCGACGCGGCCGACGCCGACGACGCGCTCGGCCTCGCCGGCCCGCGCCCCGCCGGCCGCGGGGTGCTGTCGCACCTCCTCAAGGCGATGCTGCTCGCCGTGCTCAAGCCGTTCGGGCACTGCGACGCCGGGGTCAGGGGTGGCGGTGGTGGGGAGCGCGCGGGGAAGCACGGCGGC TGCCCCCGCCGCTGCCGCGCACAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL C74507               [                                CTCCTCCTCTTCGATCTCACAATCTCCTTGTTCGCGGAACCGAAAATGCAGTCGAGGCACAGGGTGTTCGCGGAGGACCTGCTCCTGCCGCGGGAGGCGGAAGGGGAGGACCACTTCGACCGCGTCCCGGACTCGCTCGTGCTCCTCATCTTCAACCGCCTCGCCGACGCGCGCTCGCTGGGGCGGTGCTCGGCCGTGTCCAAGCGGTTCAACTCGCTCGTGCCGCTCGTTGGANGANGCCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU222622             [                                                                          AAAATGCAGTCGAGGCACAGGGTGTTCGCGGAGGACCTGCTCCTGCCGCGGGAGGCGGAAGGGGAGGACCACTTCGACCGCGTCCCGGACTCGCTCGTGCTCCTCATCTTCAACCGCCTCGCCGACGCGCGCTCGCTGGGGCGGTGCTCGGCCGTGTCCAAGCGGTTCAACTCGCTCGTGCCGCTCG TGGACGACGCCTGCCTCCGCATCGACCGCGTCATCACCGACGCGGCCGACGCCGACGACGCGCTCGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL OSR17231A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ACGGCGGC GGCGGCGGCGGCTGCGGCGCGCAG AGCACCACTCGNCGGCGCAGGTNCTGAAGAACTTCAGCAGCATCCGGAACCTCCGGATGGAGCTCCCCGTCTCCGACGTCGGCACCGACGACGGGGTGCTGCTCAGGTGGAAGGCCGTNTTCGGGAGCACCCTCCAGAGCTGCGTCATCCTCGGCGGCACCAGGGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CB668845             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GCGAGGCCTCGCAGGGTGACGACACCGGGAGCATCCCGGAGTCGTTCTACACCAACGGCGGGCTCAAGCTGCGCGTGGTGTGGACCATCAGCTCCCTCATCGCCGCGGCCACAAGGCACTACCTCCTCCGCGAGATCGTCAAGGAGCACCCCACGCTGGAGCGGGTGGCGCTCACGGACGCGCACGGCCAGGGCACGCTCAGCATGGGGCGCGACCAGATCAGGGAGTTCCGCGACAAGCCGCTCGCCGCCGCCGCCGCGGCCAACCGCACCCAGGTCCCCGCCTGCAACATGAAGCTCCGGTACGCGCCGATGCTCGAGCTCTCCGACGGCACGCGGATCCAGGGCGCCACGCTCGTCGTCATCAAGCCCGTCGGCGAGGCCGGCGGAATCGGCGGCGGCAGGAAGGAGCTCGACGAGTTCGTCGCCGACGCATTCGACGGCCCGTACAGGGAGGCCGTCAGCGCGCTCAGCAAGCGCCGCACCTACCTGCTAGAGATGAACGGCTTCTGAGAGCGTAGAGTTGAGAACTTGAGATCGCCACCCACCACCATGGCCCGTGCAGAGATCGCTCTGCTCTCTTCGCTTCAGCTGATCAGCTATTCAGCTCAGCTCGATTCAGTGGCACACCGAGGTGTTCGTCCATGTTGTAACAGCGATCGTGTGTCTCCTCGACTTTTCGATACTGCCTTAGCATCATCCTAGGGACAAATAATGGAATTAGAAATT                                                                    ]
[-] EMBL CB668091             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GCCTCGCAGGGTGACGACACCGGGAGCATCCCGGAGTCGTTCTACACCAACGGCGGGCTCAAGCTGCGCGTGGTGTGGACCATCAGCTCCCTCATCGCCGCGGCCACAAGGCACTACCTCCTCCGCGAGATCGTCAAGGAGCACCCCACGCTGGAGCGGGTGGCGCTCACGGACGCGCACGGCCAGGGCACGCTCAGCATGGGGCGCGACCAGATCAGGGAGTTCCGCGACAAGCCGCTCGCCGCCGCCGCCGCGGCCAACCGCACCCAGGTCCCCGCCTGCAACATGAAGCTCCGGTACGCGCCGATGCTCGAGCTCTCCGACGGCACGCGGATCCAGGGCGCCACGCTCGTCGTCATCAAGCCCGTCGGCGAGGCCGGCGGAATCGGCGGCGGCAGGAAGGAGCTCGACGAGTTCGTCGCCGACGCATTCGACGGCCCGTACAGGGAGGCCGTCAGCGCGCTCAGCAAGCGCCGCACCTACCTGCTAGAGATGAACGGCTTCTGAGAGCGTAGAGTTGAGAACTTGAGATCGCCACCCACCACCATGGCCCGTGCAGAGATCGCTCTGCTCTCTTCGCTTCAGCTGATCAGCTATTCAGCTCAGCTCGATTCAGTGGCACACCGAGGTGTTCGTCCATGTTGTAACAGCGATCGTGTGTCTCCTCGACTTTTCGATACTGCCTTAGCATCATCCTCGCAACAAATAATGGAATTAGAAATT                                                                    ]
[-] EMBL CB654190             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CAGCTCCCTCATCGCCGCGGCCACAAGGCACTACCTCCTCCGCGAGATCGTCAAGGAGCACCCCACGCTGGAGCGGGTGGCGCTCACGGACGCGCACGGCCAGGGCACGCTCAGCATGGGGCGCGACCAGATCAGGGAGTTCCGCGACAAGCCGCTCGCCGCCGCCGCCGCGGCCAACCGCACCCAGGTCCCCGCCTGCAACATGAAGCTCCGGTACGCGCCGATGCTCGAGCTCTCCGACGGCACGCGGATCCAGGGCGCCACGCTCGTCGTCATCAAGCCCGTCGGCGAGGCCGGCGGAATCGGCGGCGGCAGGAAGGAGCTCGACGAGTTCGTCGCCGACGCATTCGACGGCCCGTACAGGGAGGCCGTCAGCGCGCTCAGCAAGCGCCGCACCTACCTGCTAGAGATGAACGGCTTCTGAGAGCGTAGAGTTGAGAACTTGAGATCGCCACCCACCACCATGGCCCGTGCAGAGATCGCTCTGCTCTCTTCGCTTCAGCTGATCAGCTATTCAGCTCAGCTCGATTCAGTGGCACACCGAGGTGTTCGTCCATGTTGTAACAGCGATCGTGTGTCTCCTCGACTTTTCGATACTGCCTTAGCATCATCCTCGCAACAAATAATGGAATTAGAAATTTGGAATGCTTCACTTGGTTCTGTCCATTTCATGAATCGACAAAATGGAATTAAGCAAAAAAAAAAGGA]
[+] EMBL AU030451             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AGCGATCGTGTGTCTCCTCGACTTTTCGATACTGCCTTAGCATCATCCTCGCAACAAATAATGGAATTAGAAATTTGGAAan                                                             ]




>consensus_13365#0
CTCGCCTCCTCCTACCGCACCTACCTCCCTCCCTCCTCCTCTTCGATCTCACAATCTCCT
TGTTCGCGGAACCGAAAATGCAGTCGAGGCACAGGGTGTTCGCGGAGGACCTGCTCCTGC
CGCGGGAGGCGGAAGGGGAGGACCACTTCGACCGCGTCCCGGACTCGCTCGTGCTCCTCA
TCTTCAACCGCCTCGCCGACGCGCGCTCGCTGGGGCGGTGCTCGGCCGTGTCCAAGCGGT
TCAACTCGCTCGTGCCGCTCGTGGACGACGCCTGCCTCCGCATCGACCGCGTCATCACCG
ACGCGGCCGACGCCGACGACGCGCTCGGCCTCGCCGGCCCGCGCCCCGCCGGCCGCGGGG
TGCTGTCGCACCTCCTCAAGGCGATGCTGCTCGCCGTGCTCAAGCCGTTCGGGCACTGCG
ACGCCGGGGTCAGGGGTGGCGGTGGTGGGGAGCGCGCGGGGAAGCACGGCGGCGGCGGCG
GCGGCTGCGGCGCGCAGCAGCACCACTCGCCGGCGCAGGTGCTGAAGAACTTCAGCAGCA
TCCGGAACCTCCGGATGGAGCTCCCCGTCTCCGACGTCGGCACCGACGACGGGGTGCTGC
TCAGGTGGAAGGCCGTGTTCGGGAGCACCCTCCAGAGCTGCGTCATCCTCGGCGGCACCA
GGGTGGACCGGGCCGCCGCCCCCGCCGCGGCGGCGGCGACCGCCACCGCCGCCGGGGACA
GCGAGGCCTCGCAGGGTGACGACACCGGGAGCATCCCGGAGTCGTTCTACACCAACGGCG
GGCTCAAGCTGCGCGTGGTGTGGACCATCAGCTCCCTCATCGCCGCGGCCACAAGGCACT
ACCTCCTCCGCGAGATCGTCAAGGAGCACCCCACGCTGGAGCGGGTGGCGCTCACGGACG
CGCACGGCCAGGGCACGCTCAGCATGGGGCGCGACCAGATCAGGGAGTTCCGCGACAAGC
CGCTCGCCGCCGCCGCCGCGGCCAACCGCACCCAGGTCCCCGCCTGCAACATGAAGCTCC
GGTACGCGCCGATGCTCGAGCTCTCCGACGGCACGCGGATCCAGGGCGCCACGCTCGTCG
TCATCAAGCCCGTCGGCGAGGCCGGCGGAATCGGCGGCGGCAGGAAGGAGCTCGACGAGT
TCGTCGCCGACGCATTCGACGGCCCGTACAGGGAGGCCGTCAGCGCGCTCAGCAAGCGCC
GCACCTACCTGCTAGAGATGAACGGCTTCTGAGAGCGTAGAGTTGAGAACTTGAGATCGC
CACCCACCACCATGGCCCGTGCAGAGATCGCTCTGCTCTCTTCGCTTCAGCTGATCAGCT
ATTCAGCTCAGCTCGATTCAGTGGCACACCGAGGTGTTCGTCCATGTTGTAACAGCGATC
GTGTGTCTCCTCGACTTTTCGATACTGCCTTAGCATCATCCTCGCAACAAATAATGGAAT
TAGAAATTTGGAATGCTTCACTTGGTTCTGTCCATTTCATGAATCGACAAAATGGAATTA
AGCAAAAAAAAAAGGA

consensusID : consensus_13365#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 531
fasta sequence

                              [CGNNTCTNACCCAANNANCNNANNATGCNAAANANNCNANTNAACNTNGTCATAAGNAGNANNAANCTNGATNCNNNCTCNTNANANTAANNCNANGNNTAGNNANNAATNNANGANNANTNCATNCNGCAANGNNTNCTAGGNANCCNNGNNNNATAGTNATAAAACCCNNTNGNNAAGCCCNACNNNAANNGGCNGCNNNCAGGAAGGNGCTCGAACGAAGAATAGTCCCCGACGAATTTGCACGGCCCGTACAGGGAAGGCCGTTACCGCGTTAAGCAAAGCGCCGAACCTACCTGCTAGAGATGAACGGCTTCTGAGAGCGTAGAGTTGAGAACTTGAGATCGCCAACCCACCACCATGGCCCGTGCAGAGAACGCTCTGCTCTCTTCGCTTCAGCTGATCAGCTATTCAGCTCAGCTCGATTCAGTGGCACACCGAGGTGTTCGTCCATGTTGTAACAGCGATCGTGTGTCTCCTCGACTTTTCGATACTGCCTTAGCATAATCCTCGCAACAAATAATGGAATTA]

[-] EMBL BE229028             [CGNNTCTNACCCAANNANCNNANNATGCNAAANANNCNANTNAACNTNGTCATAAGNAGNANNAANCTNGATNCNNNCTCNTNANANTAANNCNANGNNTAGNNANNAATNNANGANNANTNCATNCNGCAANGNNTNCTAGGNANCCNNGNNNNATAGTNATAAAACCCNNTNGNNAAGCCCNACNNNAANNGGCNGCNNNCAGGAAGGNGCTCGAACGAAGAATAGTCCCCGACGAATTTGCACGGCCCGTACAGGGAAGGCCGTTACCGCGTTAAGCAAAGCGCCGAACCTACCTGCTAGAGATGAACGGCTTCTGAGAGCGTAGAGTTGAGAACTTGAGATCGCCAACCCACCACCATGGCCCGTGCAGAGAACGCTCTGCTCTCTTCGCTTCAGCTGATCAGCTATTCAGCTCAGCTCGATTCAGTGGCACACCGAGGTGTTCGTCCATGTTGTAACAGCGATCGTGTGTCTCCTCGACTTTTCGATACTGCCTTAGCATAATCCTCGCAACAAATAATGGAATTA]




>consensus_13365#1
CGNNTCTNACCCAANNANCNNANNATGCNAAANANNCNANTNAACNTNGTCATAAGNAGN
ANNAANCTNGATNCNNNCTCNTNANANTAANNCNANGNNTAGNNANNAATNNANGANNAN
TNCATNCNGCAANGNNTNCTAGGNANCCNNGNNNNATAGTNATAAAACCCNNTNGNNAAG
CCCNACNNNAANNGGCNGCNNNCAGGAAGGNGCTCGAACGAAGAATAGTCCCCGACGAAT
TTGCACGGCCCGTACAGGGAAGGCCGTTACCGCGTTAAGCAAAGCGCCGAACCTACCTGC
TAGAGATGAACGGCTTCTGAGAGCGTAGAGTTGAGAACTTGAGATCGCCAACCCACCACC
ATGGCCCGTGCAGAGAACGCTCTGCTCTCTTCGCTTCAGCTGATCAGCTATTCAGCTCAG
CTCGATTCAGTGGCACACCGAGGTGTTCGTCCATGTTGTAACAGCGATCGTGTGTCTCCT
CGACTTTTCGATACTGCCTTAGCATAATCCTCGCAACAAATAATGGAATTA

consensusID : consensus_13365#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 432
fasta sequence

                              [GCTCTCCGACGGCACGCGGATCCAGGGC-GCCACGCTCGTCGTCATCAAGCCCGTCGGCGAGGCCGGC-GGAATCGGCGGCGGCAGGAAGGAGCTCGAC-GAGT-TCGTCGCCGACGCATTCGACGGCCCGTACAGGGAGGCCGTCAGCGCGCTCAGCAAGTGCCGCACCTACCTGCTAGAGATGAACGGCTTCTGAGAGCGTAGAGTT-GAGAACTT-GAGATCGCCACCCACCACCAT-GGCCCGTGCAGAGAT-CGCTCT-GCT-CTCTTCGCT-TCAGCT-GATCAGCT-ATTCAGCTCAGCTC-GATTCAGTGGCACACCGAGGTGTTCGTCCATGTTGTAACAGCGGATCGTGTGTCTCCTCGACTTTTCGATACTGCCTTAGCATCATCCTCGCAACAAATAATGGAATTAGAAATTTGGAATGCTTCAAAAAAAAAAA]

[+] EMBL AU172868             [GCTCTCCGACGGCACGCGGATCCAGGGC GCCACGCTCGTCGTCATCAAGCCCGTCGGCGAGGCCGGC GGAATCGGCGGCGGCAGGAAGGAGCTCGAC GAGT TCGTCGCCGACGCATTCGACGGCCCGTACAGGGAGGCCGTCAGCGCGCTCAGCAAGTGCCGCACCTACCTGCTAGAGATGAACGGCTTCTGAGAGCGTAGAGTT GAGAACTT GAGATCGCCACCCACCACCAT GGCCCGTGCAGAGAT CGCTCT GCT CTCTTCGCT TCAGCT GATCAGCT ATTCAGCTCAGCTC GATTCAGTGGCACACCGAGGTGTTCGTCCATGTTGTAACAGCGGATCGTGTGTCTCCTCGACTTTTCGATACTGCCTTAGCATCATCCTCGCAACAAATAATGGAATTAGAAATTTGGAATGCTTCAAAAAAAAAAA]
[+] EMBL BQ907894             [                         GGCTGCCACGCTCGTCGTCATCAAGCCCGTCGGCGAGGCCGGCTGGCATCGGCGGCGGCAGGAAGGAGCTCGACAGAGTGTCGTCGCCGACGCATTCGACGGCCCGTACAGGGAGGCCGTCCGCGCGCTCAGCAAGCGCCGCACCTACCTGCTAGAGATGAACGGCTTCTGAGAGCGTAGAGTTGGAGAACTTGGAGATCGCCACCCACCACCATGGGCCCGTGCAGAGATGCGCTCTGGCTGCTCTTCGCTGTCAGCTGGATCAGCTGATTCAGCTCAGCTCGGATTCAGTGGCACACCGAGGTGTTCGTCCATGTTGTAACAGC GATCGTGTGTCTCCTCGACTTTTCGATACTGCCTTAGCATCATCCTCGCAACAAATAATGGAATTAGAAATTTGGAATGCT  AAAAAAAA   ]




>consensus_13365#2
GCTCTCCGACGGCACGCGGATCCAGGGCGCCACGCTCGTCGTCATCAAGCCCGTCGGCGA
GGCCGGCGGAATCGGCGGCGGCAGGAAGGAGCTCGACGAGTTCGTCGCCGACGCATTCGA
CGGCCCGTACAGGGAGGCCGTCAGCGCGCTCAGCAAGTGCCGCACCTACCTGCTAGAGAT
GAACGGCTTCTGAGAGCGTAGAGTTGAGAACTTGAGATCGCCACCCACCACCATGGCCCG
TGCAGAGATCGCTCTGCTCTCTTCGCTTCAGCTGATCAGCTATTCAGCTCAGCTCGATTC
AGTGGCACACCGAGGTGTTCGTCCATGTTGTAACAGCGGATCGTGTGTCTCCTCGACTTT
TCGATACTGCCTTAGCATCATCCTCGCAACAAATAATGGAATTAGAAATTTGGAATGCTT
CAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13365#0      CTCGCCTCCTCCTACCGCACCTACCTCCCTCCCTCCTCCTCTTCGATCTCACAATCTCCT 60
consensus_13365#2      ------------------------------------------------------------
consensus_13365#1      ------------------------------------------------------------
                                                                                   

consensus_13365#0      TGTTCGCGGAACCGAAAATGCAGTCGAGGCACAGGGTGTTCGCGGAGGACCTGCTCCTGC 120
consensus_13365#2      ------------------------------------------------------------
consensus_13365#1      ------------------------------------------------------------
                                                                                   

consensus_13365#0      CGCGGGAGGCGGAAGGGGAGGACCACTTCGACCGCGTCCCGGACTCGCTCGTGCTCCTCA 180
consensus_13365#2      ------------------------------------------------------------
consensus_13365#1      ------------------------------------------------------------
                                                                                   

consensus_13365#0      TCTTCAACCGCCTCGCCGACGCGCGCTCGCTGGGGCGGTGCTCGGCCGTGTCCAAGCGGT 240
consensus_13365#2      ------------------------------------------------------------
consensus_13365#1      ------------------------------------------------------------
                                                                                   

consensus_13365#0      TCAACTCGCTCGTGCCGCTCGTGGACGACGCCTGCCTCCGCATCGACCGCGTCATCACCG 300
consensus_13365#2      ------------------------------------------------------------
consensus_13365#1      ------------------------------------------------------------
                                                                                   

consensus_13365#0      ACGCGGCCGACGCCGACGACGCGCTCGGCCTCGCCGGCCCGCGCCCCGCCGGCCGCGGGG 360
consensus_13365#2      ------------------------------------------------------------
consensus_13365#1      ------------------------------------------------------------
                                                                                   

consensus_13365#0      TGCTGTCGCACCTCCTCAAGGCGATGCTGCTCGCCGTGCTCAAGCCGTTCGGGCACTGCG 420
consensus_13365#2      ------------------------------------------------------------
consensus_13365#1      ------------------------------------------------------------
                                                                                   

consensus_13365#0      ACGCCGGGGTCAGGGGTGGCGGTGGTGGGGAGCGCGCGGGGAAGCACGGCGGCGGCGGCG 480
consensus_13365#2      ------------------------------------------------------------
consensus_13365#1      ------------------------------------------------------------
                                                                                   

consensus_13365#0      GCGGCTGCGGCGCGCAGCAGCACCACTCGCCGGCGCAGGTGCTGAAGAACTTCAGCAGCA 540
consensus_13365#2      ------------------------------------------------------------
consensus_13365#1      ------------------------------------------------------------
                                                                                   

consensus_13365#0      TCCGGAACCTCCGGATGGAGCTCCCCGTCTCCGACGTCGGCACCGACGACGGGGTGCTGC 600
consensus_13365#2      ------------------------------------------------------------
consensus_13365#1      ------------------------------------------------------------
                                                                                   

consensus_13365#0      TCAGGTGGAAGGCCGTGTTCGGGAGCACCCTCCAGAGCTGCGTCATCCTCGGCGGCACCA 660
consensus_13365#2      ------------------------------------------------------------
consensus_13365#1      ------------------------------------------------------------
                                                                                   

consensus_13365#0      GGGTGGACCGGGCCGCCGCCCCCGCCGCGGCGGCGGCGACCGCCACCGCCGCCGGGGACA 720
consensus_13365#2      ------------------------------------------------------------
consensus_13365#1      ------------------------------------------------------------
                                                                                   

consensus_13365#0      GCGAGGCCTCGCAGGGTGACGACACCGGGAGCATCCCGGAGTCGTTCTACACCAACGGCG 780
consensus_13365#2      ------------------------------------------------------------
consensus_13365#1      ------------------------------------------------------------
                                                                                   

consensus_13365#0      GGCTCAAGCTGCGCGTGGTGTGGACCATCAGCTCCCTCATCGCCGCGGCCACAAGGCACT 840
consensus_13365#2      ------------------------------------------------------------
consensus_13365#1      ------------------------------------------------------------
                                                                                   

consensus_13365#0      ACCTCCTCCGCGAGATCGTCAAGGAGCACCCCACGCTGGAGCGGGTGGCGCTCACGGACG 900
consensus_13365#2      ------------------------------------------------------------
consensus_13365#1      ------------------------------------------------------------
                                                                                   

consensus_13365#0      CGCACGGCCAGGGCACGCTCAGCATGGGGCGCGACCAGATCAGGGAGTTCCGCGACAAGC 960
consensus_13365#2      ------------------------------------------------------------
consensus_13365#1      -------------------------CGNNTCTNACCCAANNANCNNANNATGCNA-AANA 34
                                                                                   

consensus_13365#0      CGCTCGCCGCCGCCGCCGCGGCCAACCGCA-CCCAGGTCCCCGCCTGCAACATGAAGCTC 1019
consensus_13365#2      ------------------------------------------------------------
consensus_13365#1      NNCNANTNAACNTNGTCATAAGNAGNANNAANCTNGATNCNNNCTCNTNANANTAANNCN 94
                                                                                   

consensus_13365#0      CGGTAC--GCGCCGATGCTCGAGCTCTCCG-ACGGCACGCGGATCCAGGGCGCCACGCTC 1076
consensus_13365#2      ----------------------GCTCTCCG-ACGGCACGCGGATCCAGGGCGCCACGCTC 37
consensus_13365#1      ANGNNTAGNNANNAATNNANGANNANTNCATNCNGCAANGNNTNCTAGGNANCCNNGNNN 154
                                                 * *   * ***       * ***   **  *   

consensus_13365#0      G-TCGTCATCAAGCCCGTCGGCGAGGCCGG--CGGAATCGGCGGCGGC-AGGAAGGAGCT 1132
consensus_13365#2      G-TCGTCATCAAGCCCGTCGGCGAGGCCGG--CGGAATCGGCGGCGGC-AGGAAGGAGCT 93
consensus_13365#1      NATAGTNATAAAACCCNNTNGNNAAGCCCNACNNNAANNGGCNGCNNNCAGGAAGGNGCT 214
                         * ** ** ** ***    *  * ***       **  *** **    ******* ***

consensus_13365#0      CGA-CGAGT--TCGTCGCCGACGCATTCG-ACGGCCCGTACAGGGA-GGCCGTCAGCGCG 1187
consensus_13365#2      CGA-CGAGT--TCGTCGCCGACGCATTCG-ACGGCCCGTACAGGGA-GGCCGTCAGCGCG 148
consensus_13365#1      CGAACGAAGAATAGTCCCCGACGAATTTGCACGGCCCGTACAGGGAAGGCCGTTACCGCG 274
                       *** ***    * *** ****** *** * **************** ****** * ****

consensus_13365#0      CTCAGCAA-GCGCCGCACCTACCTGCTAGAGATGAACGGCTTCTGAGAGCGTAGAGTTGA 1246
consensus_13365#2      CTCAGCAA-GTGCCGCACCTACCTGCTAGAGATGAACGGCTTCTGAGAGCGTAGAGTTGA 207
consensus_13365#1      TTAAGCAAAGCGCCGAACCTACCTGCTAGAGATGAACGGCTTCTGAGAGCGTAGAGTTGA 334
                        * ***** * **** ********************************************

consensus_13365#0      GAACTTGAGATCGCCA-CCCACCACCATGGCCCGTGCAGAGATCGCTCTGCTCTCTTCGC 1305
consensus_13365#2      GAACTTGAGATCGCCA-CCCACCACCATGGCCCGTGCAGAGATCGCTCTGCTCTCTTCGC 266
consensus_13365#1      GAACTTGAGATCGCCAACCCACCACCATGGCCCGTGCAGAGAACGCTCTGCTCTCTTCGC 394
                       **************** ************************* *****************

consensus_13365#0      TTCAGCTGATCAGCTATTCAGCTCAGCTCGATTCAGTGGCACACCGAGGTGTTCGTCCAT 1365
consensus_13365#2      TTCAGCTGATCAGCTATTCAGCTCAGCTCGATTCAGTGGCACACCGAGGTGTTCGTCCAT 326
consensus_13365#1      TTCAGCTGATCAGCTATTCAGCTCAGCTCGATTCAGTGGCACACCGAGGTGTTCGTCCAT 454
                       ************************************************************

consensus_13365#0      GTTGTAACAGCG-ATCGTGTGTCTCCTCGACTTTTCGATACTGCCTTAGCATCATCCTCG 1424
consensus_13365#2      GTTGTAACAGCGGATCGTGTGTCTCCTCGACTTTTCGATACTGCCTTAGCATCATCCTCG 386
consensus_13365#1      GTTGTAACAGCG-ATCGTGTGTCTCCTCGACTTTTCGATACTGCCTTAGCATAATCCTCG 513
                       ************ *************************************** *******

consensus_13365#0      CAACAAATAATGGAATTAGAAATTTGGAATGCTTCACTTGGTTCTGTCCATTTCATGAAT 1484
consensus_13365#2      CAACAAATAATGGAATTAGAAATTTGGAATGCTTCAAAAAAAAAAA-------------- 432
consensus_13365#1      CAACAAATAATGGAATTA------------------------------------------ 531
                       ******************                                          

consensus_13365#0      CGACAAAATGGAATTAAGCAAAAAAAAAAGGA 1516
consensus_13365#2      --------------------------------
consensus_13365#1      --------------------------------