cluster # 13562

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Oryza sativa
cluster # 13562 cluster # 13562 Sequences # 13 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13562#0 length = 2064 sequences # 11

consensus_13562#1 length = 667 sequences # 1
consensus_13562#2 length = 422 sequences # 1

consensusID : consensus_13562#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 2064
fasta sequence

                              [CCAGGATCTTTTTGCTCATACATGACCACCGCATGTGAGAAGTTAGGGCGTTCATGAGATTCATGAGATTGAGGAGGGAAAATATGTAAGGCAAAGGAGCTGAATCTAACTACAGCAACCCTCTGATTGTCCCAGAGGAAACGCATGAACTTTCCCCATTCAATATTCTGACGATCGTCTTCAGGTTCAGGAAGCAGTGAAAATTTCAGGAAATCACACTGCTGGTACACCTTAGTTGGCACAAACCTAACAATTGACCAAACCGAGGGCACTTTAACTGGAATATCACAGACTTTGGTGCGGCATATGTTCTTAGAATCTTTTTGTAATAATACATAGTTCAAGCCACCACCTTGATTTTCATGTGGCGGCTCATTCAAATCAAGTGTTTCATCCGCCATCTCCTTCTCTTCACCCCCGGGAGGGATCGGAGGCGAGGCGGAGACGGAGGCGGCGGCCACGGCGGCGAGCGCGCAGCGGGTGAGGAGGCGGCGGCGGTGGGATTTTGGGCGCGGCGAAGCGGGGCGTGTTTTGTGCTGGCGATACGAAGGAGCATTGAAGGCGGACGCCCAGCGGGGAGAGCGAGCGGCTCGACGCCGACGGCCATGGCGCTGCTGATGGATCCCGGGGCGGGAGGCCCCCTGACGGAGAGCGAGAAGGCCGACCTGGACGCCATCGCCGCCATCAAGGAGTCGGCGGCGGCAGAGTACAAGGAGAAGGGCAACCGGCTCGTCAAGATGGGCCGGAGCCACTACGCCGACGCCGTCGACTGCTACACCAAGGCCATTGCCCAGATGGAGCCGCTGCCGCCGCCGCCGGTGCCATCCCCCGACGCCTCCGTCCTCTTCGCCAACCGCGCCCACGTCAACCTCCTCCTCGGCAACCACCGCCGCGCCCTCGACGACGCCGCCCGTGCCGTCCAGCTCTCTCCCTCCAACGTCAAGGCGTACTACCGGGCGGCGAAAGCGGCGATTGCTCTCGGCTTGCTGCCGGAGGCGGCGGCCTTCTGCCGGCGGGGAATCGAGCAGGACCCTGCTAATGAGGAGCTCAAGAAATTGCTCGCACAAGTGGACGCCCAACAGAGTGAGCAAGATCGTCATAGGGCCAAGGTTGCGCAGGCCGTGTCCGCTGCGAAGGATATTGTTGCCGCTGTAGAGAAGAGGGGGTTGAAGCTTGGGAAGGCAGCATATCAAGAGCTTACCGGTGTAAAGAAGCCGAAGTTGGATGAGCGGGGTGTGCTTCACTGGCCAGTTCTTCTGCTCTACCCGGAGGTCATGTCGAGTGACTTCATCGAGGATTTTCCGGAGACAGATACTTTCGTGCCCCACCTTGATGTCATGTTCTCAGAAAGTTCTCCACCATTACCATGGGAT-GATAAACACGCTTACACACGGGATGCTGTT-GAGTTATATTATCAGGCTGGCG-TTGGCACAG-TTCTGTCC-AAAAGT-G-AAATATTGAAAATTCTTTTGG-AAGGCACTATGGACTCAAAGTCA-CTT-CCTGAAAGCCTGCTTGATG-AGGAAGATGGAGAAAATGATGATGGCAAGAGCAGCACAATTACATCATCAGATAAGGGTTCTGTGAAGTGGATCAATGTAAAAGAGGGAAAAACTCTTCAAGAAGTGCTGCAGCATAAAGACTTCATCATCCCTGCAATTCCTGTGTTCTTTGTTGTTTCAAGAAAATCCACCTTTTACAGAAAGTTCAAGGCAGGAAACTGGTCTTTGCCGTAATGCTTAGCGTGATTCAGTTTGGCACATTTGGAAGATGATTAGTGCGGTACGCGTATGATCAGAGAAGAAAAGCTGGCCACCTAGTCATTCTTGTATGGTTTTATATGTTGCTTTATAGAATGATGAGGTGTGTTCTTTCCTGTATTTGGTA-CAATTCTCAAGTATTTTCCTATCCTTTGCTTGAGATGCTCAGTATGCCGTTTCTGGAGAAACACACTGAGAATGTACTTATGTATGGACAGCTTTGGGCCTGATTTAGCGCTTGGCACAGTGATGGTATCTTGTACGCCATATCTACCAACCAATT-TTAGCACCAAACTTTTCTTTAAGAGAA]

[+] EMBL AK103688             [CCAGGATCTTTTTGCTCATACATGACCACCGCATGTGAGAAGTTAGGGCGTTCATGAGATTCATGAGATTGAGGAGGGAAAATATGTAAGGCAAAGGAGCTGAATCTAACTACAGCAACCCTCTGATTGTCCCAGAGGAAACGCATGAACTTTCCCCATTCAATATTCTGACGATCGTCTTCAGGTTCAGGAAGCAGTGAAAATTTCAGGAAATCACACTGCTGGTACACCTTAGTTGGCACAAACCTAACAATTGACCAAACCGAGGGCACTTTAACTGGAATATCACAGACTTTGGTGCGGCATATGTTCTTAGAATCTTTTTGTAATAATACATAGTTCAAGCCACCACCTTGATTTTCATGTGGCGGCTCATTCAAATCAAGTGTTTCATCCGCCATCTCCTTCTCTTCACCCCCGGGAGGGATCGGAGGCGAGGCGGAGACGGAGGCGGCGGCCACGGCGGCGAGCGCGCAGCGGGTGAGGAGGCGGCGGCGGTGGGATTTTGGGCGCGGCGAAGCGGGGCGTGTTTTGTGCTGGCGATACGAAGGAGCATTGAAGGCGGACGCCCAGCGGGGAGAGCGAGCGGCTCGACGCCGACGGCCATGGCGCTGCTGATGGATCCCGGGGCGGGAGGCCCCCTGACGGAGAGCGAGAAGGCCGACCTGGACGCCATCGCCGCCATCAAGGAGTCGGCGGCGGCAGAGTACAAGGAGAAGGGCAACCGGCTCGTCAAGATGGGCCGGAGCCACTACGCCGACGCCGTCGACTGCTACACCAAGGCCATTGCCCAGATGGAGCCGCTGCCGCCGCCGCCGGTGCCATCCCCCGACGCCTCCGTCCTCTTCGCCAACCGCGCCCACGTCAACCTCCTCCTCGGCAACCACCGCCGCGCCCTCGACGACGCCGCCCGTGCCGTCCAGCTCTCTCCCTCCAACGTCAAGGCGTACTACCGGGCGGCGAAAGCGGCGATTGCTCTCGGCTTGCTGCCGGAGGCGGCGGCCTTCTGCCGGCGGGGAATCGAGCAGGACCCTGCTAATGAGGAGCTCAAGAAATTGCTCGCACAAGTGGACGCCCAACAGAGTGAGCAAGATCGTCATAGGGCCAAGGTTGCGCAGGCCGTGTCCGCTGCGAAGGATATTGTTGCCGCTGTAGAGAAGAGGGGGTTGAAGCTTGGGAAGGCAGCATATCAAGAGCTTACCGGTGTAAAGAAGCCGAAGTTGGATGAGCGGGGTGTGCTTCACTGGCCAGTTCTTCTGCTCTACCCGGAGGTCATGTCGAGTGACTTCATCGAGGATTTTCCGGAGACAGATACTTTCGTGCCCCACCTTGATGTCATGTTCTCAGAAAGTTCTCCACCATTACCATGGGAT GATAAACACGCTTACACACGGGATGCTGTT GAGTTATATTATCAGGCTGGCG TTGGCACAG TTCTGTCC AAAAGT G AAATATTGAAAATTCTTTTGG AAGGCACTATGGACTCAAAGTCA CTT CCTGAAAGCCTGCTTGATG AGGAAGATGGAGAAAATGATGATGGCAAGAGCAGCACAATTACATCATCAGATAAGGGTTCTGTGAAGTGGATCAATGTAAAAGAGGGAAAAACTCTTCAAGAAGTGCTGCAGCATAAAGACTTCATCATCCCTGCAATTCCTGTGTTCTTTGTTGTTTCAAGAAAATCCACCTTTTACAGAAAGTTCAAGGCAGGAAACTGGTCTTTGCCGTAATGCTTAGCGTGATTCAGTTTGGCACATTTGGAAGATGATTAGTGCGGTACGCGTATGATCAGAGAAGAAAAGCTGGCCACCTAGTCATTCTTGTATGGTTTTATATGTTGCTTTATAGAATGATGAGGTGTGTTCTTTCCTGTATTTGGTA CAATTCTCAAGTATTTTCCTATCCTTTGCTTGAGATGCTCAGTATGCCGTTTCTGGAGAAACACACTGAGAATGTACTTATGTATGGACAGCTTTGGGCCTGATTTAGCGCTTGGCACAGTGATGGTATCTTGTACGC                                              ]
[+] EMBL C74105               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CGCACAAGTGGACGCCCAACAGAGTGAGCAAGATCGTCATAGGGCCAAGGTTGCGCAGGCCGTGTCCGCTGCGAAGGATATTGTTGCCGCTATAGAGAAGAGGGGGTTGAAGCTTGGGAAGGCAGCATATCAAGAGCTTACCGGTGTAAAGAAGCCGAAGTTGGATGAGCAGGGTGTGCTTCACTGGCCAGTTCTTCTGCTCTACCCGGAGGTCATGTCGAGTGACTTCATCGAGGATTTTCCGGAGACAGAGACTTTCGTGCCCCACCTTGATGTCATGTTCTCAGAAAGTTCTCCACCATTACCATGGGAT GATAAACACGCTTACACACGGGATGCTGTT GAGTNATATTATCAGGCTGGCGTTTGGCACAGTTTCTGTCC AAAAGT GAAAATATTGAAAATTCTTTTGGAAAGGCACTATGGACTCAAAGTCA CTTtc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL OSC17071             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CATGTCGAGTGACTTCATCGAGGATTTTCCGGAGACAGATACTTTCGTGCCCCACCTTGATGTCATGTTCTCAGAAAGTTCTCCACCATTACCATGGGAT GATAAACACGCTTACACACGGGATGCTGTT GAGTTATATTATCAGGCTGGCG TTGGCACAG TTCTGTCC AAAAGT G AAATATTGAAAATTCTTTTGG AAGGCACTATGGACTCAAAGTCA CTT CCTGAAAGCCTGCTTGATG AGGAAGATGGNGAAAATGATGATGGTAAGAGCAGCACAATTACATCATCAGATAAGGGTTCTGTGAAGTGGATCAATGTAAAAGAGGGNAAAACTCTTCAAGAAGTNCTGCAGCATAAAGGCTTCATCATCCCTGCAATTCCTGTGTTCTTTGTTGTTTC                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CB659543             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TTTCGTGCCCCACCTTGATGTCATGTTCTCAGAAAGTTCTCCACCATTACCATGGGAT GATAAACACGCTTACACACGGGATGCTGTT GAGTTATATTATCAGGCTGGCG TTGGCACAG TTCTGTCC AAAAGT G AAATATTGAAAATTCTTTTGG AAGGCACTATGGACTCAAAGTCA CTT CCTGAAAGCCTGCTTGATG AGGAAGATGGAGAAAATGATGATGGCAAGAGCAGCACAATTACATCATCAGATAAGGGTTCTGTGAAGTGGATCAATGTAAAAGAGGGAAAAACTCTTCAAGAAGTGCTGCAGCATAAAGACTTCATCATCCCTGCAATTCCTGTGTTCTTTGTTGTTTCAAGAAAATCCACCTTTTACAGAAAGTTCAAGGCAGGAAACTGGTCTTTGCCGTAATGCTTAGCGTGATTCAGTTTGGCACATTTGGAAGATGATTAGTGCGGTACGCGTATGATCAGAGAAGAAAAGCTGGCCACCTAGTCATTCTTGTATGGTTTTATATGTTGCTTTATAGAATGATGAGGTGTGTTCTTTCCTGTATTTGGTA CAATTCTCAAGTATTTTCCTATCCTTTGCTTGAGATGCTCAGTATGCCGTTTCTGGAGAAACACACTGAGAATGTACTTATGTATGGACAGCTTTGGGCCTGATTTAGCGCTTGGCACAGTGATGGTATCTTGTACGCCATATGGGCCAACCAATT TTAGCCCC                   ]
[-] EMBL CB659544             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TCTCAGAAAGTTCTCCACCATTACCATGGGAT GATAAACACGCTTACACACGGGATGCTGTT GAGTTATATTATCAGGCTGGCG TTGGCACAG TTCTGTCC AAAAGT G AAATATTGAAAATTCTTTTGG AAGGCACTATGGACTCAAAGTCA CTT CCTGAAAGCCTGCTTGATG AGGAAGATGGAGAAAATGATGATGGCAAGAGCAGCACAATTACATCATCAGATAAGGGTTCTGTGAAGTGGATCAATGTAAAAGAGGGAAAAACTCTTCAAGAAGTGCTGCAGCATAAAGACTTCATCATCCCTGCAATTCCTGTGTTCTTTGTTGTTTCAAGAAAATCCACCTTTTACAGAAAGTTCAAGGCAGGAAACTGGTCTTTGCCGTAATGCTTAGCGTGATTCAGTTTGGCACATTTGGAAGATGATTAGTGCGGTACGCGTATGATCAGAGAAGAAAAGCTGGCCACCTAGTCATTCTTGTATGGTTTTATATGTTGCTTTATAGAATGATGAGGTGTGTTCTTTCCTGTATTTGGTA CAATTCTCAAGTATTTTCCTATCCTTTGCTTGAGATGCTCAGTATGCCGTTTCTGGAGAAACACACTGAGAATGTACTTATGTATGGACAGCTTTGGGCCTGATTTAGCGCTTGGCACAGTGATGGTATCTTGTACGCCATATCTACCAACCAATT TTAGCACCAAACTTTTCTTTAAGAGAA]
[-] EMBL BU673562             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CTCAGAAAG GCTCCACCATTACCATGGGAT GAT AACACGCTTACACACGGGATTCTGTT GAGTTATATTATCAGGCTGGCG TTGGCACAG TTCTGTCC AAAAGT G AAATAATGAAAATTCTTTTGG AAGGCACTATGGACTCAAAGTCA CTT CCTGAAAGCCTGCTTGATG AGGAAGATGGAGAAAATGATGATGGCAAGAGCAGCACAATTACATCATCAGATAAGGGTTCTGTGAAGTGGATCAATGTAAAAGAGGGAAAAACTCTTCAAGAAGTGCTGCAGCATAAAGACTTCATCATCCCTGCAATTCCTGTGTTCTTTGTTGTTTCAAGAAAATCCACCTTTTACAGAGAGTTCAAGGCAGGAAACTGGTCTTTGCCGTAATGCTTAGCGTGATTCAGTTTGGCACATTTGGAAGATGATTAGTGCGGTACGCGTATGATCAGAGAAGAAAAGCTGGCCACCTAGTCATTCTTGTATGGTTTTATATGTTGCTTTATAGAATGATGAGGTGTGTTCTTTCCTGTATTTGGTA CAATTCTCAAGTATTTTCCTATCCTTTGCTTGAGATGCTCAGTATGCCGTTTCTGGAGAAACACACTGAGAATGTACTTATGTATGGACAGCTTTGGGCCTGATTTAGCGCTTGGCACAGTGATGGTATCTTGTAC                                                ]
[-] EMBL CB966653             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CCAGTA CATGGGATGGAT AACAC CTTACAC C GGATGCTGTTGGAG TATA TATCA GCCGGCG TTGGCACA  TTCCGTCCAAAAAGTGG AAATATTG AAATTCTTTTGGAAAGGCACTATGGACTCAAAGTCACCTT CCTGAAAGCCTGCTTGATGAAGGAAGATGGAGAAAATGATGATGGCAAGAGCAGCACAATTACATCATCAGATAAGGGTTCTGTGAAGTGGATCCATGTAAAAGAGGGAAAAACTCTTCAAGAAGTGCTGCAGCATAAAGACTTCATCATCCCGGCAATTCCTGTGTTCTTTGTTGTTTCAAGAAAATCCACCTTTTACAGAGAGTTCAAGGCAGGAAACTGGTCTTTGCCGTAATGCTTAGCGTGATTCAGTTTGGCACATTTGGAAGATGATTAGTGCGGTACGCGTATGATCAGAGAAGAAAAGCTGGCCACCTAGTCATTCTTGTATGGTTTTATATGTTGCTTTATAGAATGATGAGGTGTGTTCTTTCCTGTATTTGGTA CAATTCTCAAGTATTTTCCTATCCTTTGCTTGAGATGCTCAGTATGCCGTTTCTGGAGAAACAC CTGAGAATGTACTTATGTATGGACAGCTTTGGGCCTGATTTAGCGCTTGGCACAGTGATGGTATCTTGTAC                                                ]
[-] EMBL BI305849             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CCATGGGAT GATAAACACGCTTACACACGGGATGCTGTT GAGTTATATTATCAGGCTGGCG TTGGCACAG TTCTGTCC AAAAGT G AAATATTGAAAATTCTTTTGG AAGGCACTATGGACTCAAAGTCA CTT CCTGAAAGCCTGCTTGATG AGGAAGATGGAGAAAATGATGATGGCAAGAGCAGCACAATTACATCATCAGATAAGGGTTCTGTGAAGTGGATCAATGTAAAAGAGGGAAAAACTCTTCAAGAAGTGCTGCAGCATAAAGACTTCATCATCCCTGCAATTCCTGTGTTCTTTGTTGTTTCAAGAAAATCCACCTTTTACAGAGAGTTCAAGGCAGGAAACTGGTCTTTGCCGTAATGCTTAGCGTGATTCAGTTTGGCACATTTGGAAGATGATTAGTGCGGTACGCGTATGATCAGAGAAGAAAAGCTGGCCACCTAGTCATTCTTGTATGGTTTTATATGTTGCTTTATAGAATGATGAGGTGTGTTCTTTCCTGTATTTGGTA CAATTCTCAAGTATTTTCCTATCCTTTGCTTGAGATGCTCAGTATGCCGTTTCTGGAGAAACACACTGAGAATGTACTTATGTATGGACAGCTTTGGGCCTGATTTAGCGCTTGGCACAGTGATGGTATCTTGTAC                                                ]
[+] EMBL BQ909193             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            A CTTCCCTGAAACCCTGCTTGATG AGGAAGATGGAGAAAATGATGATGGCAAGAGCAGCACAATTACATCATCAGATAAGGGTTCTGTGAAGTGGATCAATGTAAAAGAGGGAAAAACTCTTCAAGAAGTGCTGCAGCATAAAGACTTCATCATCCCTGCAATTCCTGTGTTCTTTGTTGTTTCAAGAAAATCCACCTTTTACAGAGAGTTCAAGGCAGGAAACTGGTCTTTGCCGTAATGCTTAGCGTGATTCAGTTTGGCACATTTGGAAGATGATTAGTGCGGTACGCGTATGATCAGAGAAGAAAAGCTGGCCACCTAGTCATTCTTGTATGGTTTTATATGTTGCTTTATAGAATGATGAGGTGTGTTCTTTCCTGTATTTGGTACCAATTCTCAAGTATTTTCCTATCCTTTGCTTGAGATGCTCAGTATGCCGTTTCTGGAGAAACACACTGAGAATGTACTTATGTATGGACAGCTTTGGGCCTGATTTAGCGCTTGGCACAGTGATGGTATCTTGTACGCCATATCTACCAACCCNTTCTTAGCACCAAACTTTTCTTgtcaaaaa]
[+] EMBL AU101392             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AAGCCTGCTTGATG AGGAAGATGGAGAAAATGATGATGGCAAGAGCAGCACAATTACATCATCAGATAAGGGTTCTGTGAAGTGGATCAATGTAAAAGAGGGAAAAACTCTTCAAGAAGTGCTGCAGCATAAAGACTTCATCATCCCTGCAATTCCTGTGTTCTTTGTTGTTTCAAGAAAATCCACCTTTTACAGAAAGTTCAAGGCAGGAAACTGGTCTTTGCCGTAATGCTTAGCGTGATTCAGTTTGGCACATTTGGAAGATGATTAGTGCGGTACGCGTATGATCAGAGAAGAAAAGCTGGCCACCTAGTCATTCTTGTATGGTTTTATATGTTGCTTTATAGAATGATGAGGTGTGTTCTTTCCTGTATTTGGTA CAATTCTCAAGTATTTTCCTATCCTTTGCTTGAGATGCTCAGTATGCCGTTTCTGGAGAAACACACTGAGAATGTACTTATGTATGGACAGCTTTGGGCCTGATTTAGCGCTTGGCACAGTGATGGTATCTTGTACGCCATATCTACCAACCAATT TTAGCACCAAAaaaaaa          ]
[+] EMBL AU166325             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TGCAGCATAAAGACTTCATCATCCCTGCAATTCCTGTGTTCTTTGTTGTTTCAAGAAAATCCNCCTTTTACAGAAAGTTCAAGGCAGGAAACTGGTCTTTGCCGTAATGCTTAGCGTGATTCAGTTTGGCACATTTGGAAGATGATTAGTGCGGTACGCGTATGATCAGAGAAGAAAAGCTGGCCACCTAGTCATTCTTGTATGGTTTTATATGTTGCTTTATAGAATGATGAGGTGTGTTCTTTCCTGTATTTGGTA CAATTCTCAAGTATTTTCCTATCCTTTGCTTGAGATGCTCAGTATGCCGTTTCTGGAGAAACACACTGAGAATGTACTTATGTATGGACAGCTTTGGGCCTGATTTAGCGCTTGGCACAGTGATGGTATCTTGTACGCCATATCTACCAACCAATT TTAaaaaaaaa                ]




>consensus_13562#0
CCAGGATCTTTTTGCTCATACATGACCACCGCATGTGAGAAGTTAGGGCGTTCATGAGAT
TCATGAGATTGAGGAGGGAAAATATGTAAGGCAAAGGAGCTGAATCTAACTACAGCAACC
CTCTGATTGTCCCAGAGGAAACGCATGAACTTTCCCCATTCAATATTCTGACGATCGTCT
TCAGGTTCAGGAAGCAGTGAAAATTTCAGGAAATCACACTGCTGGTACACCTTAGTTGGC
ACAAACCTAACAATTGACCAAACCGAGGGCACTTTAACTGGAATATCACAGACTTTGGTG
CGGCATATGTTCTTAGAATCTTTTTGTAATAATACATAGTTCAAGCCACCACCTTGATTT
TCATGTGGCGGCTCATTCAAATCAAGTGTTTCATCCGCCATCTCCTTCTCTTCACCCCCG
GGAGGGATCGGAGGCGAGGCGGAGACGGAGGCGGCGGCCACGGCGGCGAGCGCGCAGCGG
GTGAGGAGGCGGCGGCGGTGGGATTTTGGGCGCGGCGAAGCGGGGCGTGTTTTGTGCTGG
CGATACGAAGGAGCATTGAAGGCGGACGCCCAGCGGGGAGAGCGAGCGGCTCGACGCCGA
CGGCCATGGCGCTGCTGATGGATCCCGGGGCGGGAGGCCCCCTGACGGAGAGCGAGAAGG
CCGACCTGGACGCCATCGCCGCCATCAAGGAGTCGGCGGCGGCAGAGTACAAGGAGAAGG
GCAACCGGCTCGTCAAGATGGGCCGGAGCCACTACGCCGACGCCGTCGACTGCTACACCA
AGGCCATTGCCCAGATGGAGCCGCTGCCGCCGCCGCCGGTGCCATCCCCCGACGCCTCCG
TCCTCTTCGCCAACCGCGCCCACGTCAACCTCCTCCTCGGCAACCACCGCCGCGCCCTCG
ACGACGCCGCCCGTGCCGTCCAGCTCTCTCCCTCCAACGTCAAGGCGTACTACCGGGCGG
CGAAAGCGGCGATTGCTCTCGGCTTGCTGCCGGAGGCGGCGGCCTTCTGCCGGCGGGGAA
TCGAGCAGGACCCTGCTAATGAGGAGCTCAAGAAATTGCTCGCACAAGTGGACGCCCAAC
AGAGTGAGCAAGATCGTCATAGGGCCAAGGTTGCGCAGGCCGTGTCCGCTGCGAAGGATA
TTGTTGCCGCTGTAGAGAAGAGGGGGTTGAAGCTTGGGAAGGCAGCATATCAAGAGCTTA
CCGGTGTAAAGAAGCCGAAGTTGGATGAGCGGGGTGTGCTTCACTGGCCAGTTCTTCTGC
TCTACCCGGAGGTCATGTCGAGTGACTTCATCGAGGATTTTCCGGAGACAGATACTTTCG
TGCCCCACCTTGATGTCATGTTCTCAGAAAGTTCTCCACCATTACCATGGGATGATAAAC
ACGCTTACACACGGGATGCTGTTGAGTTATATTATCAGGCTGGCGTTGGCACAGTTCTGT
CCAAAAGTGAAATATTGAAAATTCTTTTGGAAGGCACTATGGACTCAAAGTCACTTCCTG
AAAGCCTGCTTGATGAGGAAGATGGAGAAAATGATGATGGCAAGAGCAGCACAATTACAT
CATCAGATAAGGGTTCTGTGAAGTGGATCAATGTAAAAGAGGGAAAAACTCTTCAAGAAG
TGCTGCAGCATAAAGACTTCATCATCCCTGCAATTCCTGTGTTCTTTGTTGTTTCAAGAA
AATCCACCTTTTACAGAAAGTTCAAGGCAGGAAACTGGTCTTTGCCGTAATGCTTAGCGT
GATTCAGTTTGGCACATTTGGAAGATGATTAGTGCGGTACGCGTATGATCAGAGAAGAAA
AGCTGGCCACCTAGTCATTCTTGTATGGTTTTATATGTTGCTTTATAGAATGATGAGGTG
TGTTCTTTCCTGTATTTGGTACAATTCTCAAGTATTTTCCTATCCTTTGCTTGAGATGCT
CAGTATGCCGTTTCTGGAGAAACACACTGAGAATGTACTTATGTATGGACAGCTTTGGGC
CTGATTTAGCGCTTGGCACAGTGATGGTATCTTGTACGCCATATCTACCAACCAATTTTA
GCACCAAACTTTTCTTTAAGAGAA

consensusID : consensus_13562#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 667
fasta sequence

                              [GCTGGTGTATATTAAGCAGCCACATACCCCAATCAAGTACGCTCTTGTTTTCCTTCAAACAAATTGGCAAGCAGTAGCTCAACTTGCTCTGGTGTGTGCTTGACATATTTTCCGGGTGCCTTGCTGTTCTCGATGAGAGGCCCAAAGCGCTTTAGGAAAGATCTGTATGCAGGCAACAGGATTTCAGCAACTGCAAGTCTTAGTGACTCACGCAACTCCGTATCTGGAACAGACCAGCCACACTGCTTTTGATAAATCTCCTCAAATAGCACCCTCGTGCCGAATTCGGCACGAGGAGACTTCATCATCCCTGCAATTCCTGTGTTCTTTGTTGTTTCAAGAAAATCCACCTTTTACAGAAAGTTCAAGGCAGGAAACTGGTCTTTGCCGTAATGCTTAGCGTGATTCAGTTTGGCACATTTGGAAGATGATTAGTGCGGTACGCGTATGATCAGAGAAGAAAAGCTGGCCACCTAGTCATTCTTGTATGGTTTTATATGTTGCTTTATAGAATGATGAGGTGTGTTCTTTCCTGTATTTGGTACAATTCTCAAGTATTTTCCTATCCTTTGCTTGAGATGCTCAGTATGCCGTTTCTGGAGAAACACACTGAGAATGTACTTATGTATGGACAGCTTTGGGCCTGATTTAGCGCTTGGCACAGTGA]

[-] EMBL CA999008             [GCTGGTGTATATTAAGCAGCCACATACCCCAATCAAGTACGCTCTTGTTTTCCTTCAAACAAATTGGCAAGCAGTAGCTCAACTTGCTCTGGTGTGTGCTTGACATATTTTCCGGGTGCCTTGCTGTTCTCGATGAGAGGCCCAAAGCGCTTTAGGAAAGATCTGTATGCAGGCAACAGGATTTCAGCAACTGCAAGTCTTAGTGACTCACGCAACTCCGTATCTGGAACAGACCAGCCACACTGCTTTTGATAAATCTCCTCAAATAGCACCCTCGTGCCGAATTCGGCACGAGGAGACTTCATCATCCCTGCAATTCCTGTGTTCTTTGTTGTTTCAAGAAAATCCACCTTTTACAGAAAGTTCAAGGCAGGAAACTGGTCTTTGCCGTAATGCTTAGCGTGATTCAGTTTGGCACATTTGGAAGATGATTAGTGCGGTACGCGTATGATCAGAGAAGAAAAGCTGGCCACCTAGTCATTCTTGTATGGTTTTATATGTTGCTTTATAGAATGATGAGGTGTGTTCTTTCCTGTATTTGGTACAATTCTCAAGTATTTTCCTATCCTTTGCTTGAGATGCTCAGTATGCCGTTTCTGGAGAAACACACTGAGAATGTACTTATGTATGGACAGCTTTGGGCCTGATTTAGCGCTTGGCACAGTGA]




>consensus_13562#1
GCTGGTGTATATTAAGCAGCCACATACCCCAATCAAGTACGCTCTTGTTTTCCTTCAAAC
AAATTGGCAAGCAGTAGCTCAACTTGCTCTGGTGTGTGCTTGACATATTTTCCGGGTGCC
TTGCTGTTCTCGATGAGAGGCCCAAAGCGCTTTAGGAAAGATCTGTATGCAGGCAACAGG
ATTTCAGCAACTGCAAGTCTTAGTGACTCACGCAACTCCGTATCTGGAACAGACCAGCCA
CACTGCTTTTGATAAATCTCCTCAAATAGCACCCTCGTGCCGAATTCGGCACGAGGAGAC
TTCATCATCCCTGCAATTCCTGTGTTCTTTGTTGTTTCAAGAAAATCCACCTTTTACAGA
AAGTTCAAGGCAGGAAACTGGTCTTTGCCGTAATGCTTAGCGTGATTCAGTTTGGCACAT
TTGGAAGATGATTAGTGCGGTACGCGTATGATCAGAGAAGAAAAGCTGGCCACCTAGTCA
TTCTTGTATGGTTTTATATGTTGCTTTATAGAATGATGAGGTGTGTTCTTTCCTGTATTT
GGTACAATTCTCAAGTATTTTCCTATCCTTTGCTTGAGATGCTCAGTATGCCGTTTCTGG
AGAAACACACTGAGAATGTACTTATGTATGGACAGCTTTGGGCCTGATTTAGCGCTTGGC
ACAGTGA

consensusID : consensus_13562#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 422
fasta sequence

                              [AGCGGCGAGGAAGGAGGCGGCGCCCAGCGGGGAGAGCGAGCGGCTCGACGCCGACGGCCATGGCGCTGCTGATGGATCCCGGGGCGGGAGGCCCCCTGACGGAGAGCGAGAAGGCCGACCTGGACGCCATCGCCGCCATCAAGGAGTCGGCGGCGGCAGAGTACAAGGAGAAGGGCAACCGGCTCGTCAAGATGGGCCGGAGCCACTACGCCGACGCCGTCGACTGCTACACCAAGGCCATTGCCCAGATGGAGCCGCTGCCGCCGCCGCCGGTGCCATCCCCCGACGCCTCCGTCCTCTTCGCCAACCGCGCCCACGTCAACCTCCTCCTCGGCAACCACCGCCGCGCCCTCGACGACGCCGCCCGTGCCGTCCAGCTCTCTCCCTCCAACGTCAAGGCGTACTACCGGGCGGCGAAAGCG]

[+] EMBL AU166326             [AGCGGCGAGGAAGGAGGCGGCGCCCAGCGGGGAGAGCGAGCGGCTCGACGCCGACGGCCATGGCGCTGCTGATGGATCCCGGGGCGGGAGGCCCCCTGACGGAGAGCGAGAAGGCCGACCTGGACGCCATCGCCGCCATCAAGGAGTCGGCGGCGGCAGAGTACAAGGAGAAGGGCAACCGGCTCGTCAAGATGGGCCGGAGCCACTACGCCGACGCCGTCGACTGCTACACCAAGGCCATTGCCCAGATGGAGCCGCTGCCGCCGCCGCCGGTGCCATCCCCCGACGCCTCCGTCCTCTTCGCCAACCGCGCCCACGTCAACCTCCTCCTCGGCAACCACCGCCGCGCCCTCGACGACGCCGCCCGTGCCGTCCAGCTCTCTCCCTCCAACGTCAAGGCGTACTACCGGGCGGCGAAAGCG]




>consensus_13562#2
AGCGGCGAGGAAGGAGGCGGCGCCCAGCGGGGAGAGCGAGCGGCTCGACGCCGACGGCCA
TGGCGCTGCTGATGGATCCCGGGGCGGGAGGCCCCCTGACGGAGAGCGAGAAGGCCGACC
TGGACGCCATCGCCGCCATCAAGGAGTCGGCGGCGGCAGAGTACAAGGAGAAGGGCAACC
GGCTCGTCAAGATGGGCCGGAGCCACTACGCCGACGCCGTCGACTGCTACACCAAGGCCA
TTGCCCAGATGGAGCCGCTGCCGCCGCCGCCGGTGCCATCCCCCGACGCCTCCGTCCTCT
TCGCCAACCGCGCCCACGTCAACCTCCTCCTCGGCAACCACCGCCGCGCCCTCGACGACG
CCGCCCGTGCCGTCCAGCTCTCTCCCTCCAACGTCAAGGCGTACTACCGGGCGGCGAAAG
CG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13562#0      CCAGGATCTTTTTGCTCATACATGACCACCGCATGTGAGAAGTTAGGGCGTTCATGAGAT 60
consensus_13562#2      ------------------------------------------------------------
consensus_13562#1      ------------------------------------------------------------
                                                                                   

consensus_13562#0      TCATGAGATTGAGGAGGGAAAATATGTAAGGCAAAGGAGCTGAATCTAACTACAGCAACC 120
consensus_13562#2      ------------------------------------------------------------
consensus_13562#1      ------------------------------------------------------------
                                                                                   

consensus_13562#0      CTCTGATTGTCCCAGAGGAAACGCATGAACTTTCCCCATTCAATATTCTGACGATCGTCT 180
consensus_13562#2      ------------------------------------------------------------
consensus_13562#1      ------------------------------------------------------------
                                                                                   

consensus_13562#0      TCAGGTTCAGGAAGCAGTGAAAATTTCAGGAAATCACACTGCTGGTACACCTTAGTTGGC 240
consensus_13562#2      ------------------------------------------------------------
consensus_13562#1      ------------------------------------------------------------
                                                                                   

consensus_13562#0      ACAAACCTAACAATTGACCAAACCGAGGGCACTTTAACTGGAATATCACAGACTTTGGTG 300
consensus_13562#2      ------------------------------------------------------------
consensus_13562#1      ------------------------------------------------------------
                                                                                   

consensus_13562#0      CGGCATATGTTCTTAGAATCTTTTTGTAATAATACATAGTTCAAGCCACCACCTTGATTT 360
consensus_13562#2      ------------------------------------------------------------
consensus_13562#1      ------------------------------------------------------------
                                                                                   

consensus_13562#0      TCATGTGGCGGCTCATTCAAATCAAGTGTTTCATCCGCCATCTCCTTCTCTTCACCCCCG 420
consensus_13562#2      ------------------------------------------------------------
consensus_13562#1      ------------------------------------------------------------
                                                                                   

consensus_13562#0      GGAGGGATCGGAGGCGAGGCGGAGACGGAGGCGGCGGCCACGGCGGCGAGCGCGCAGCGG 480
consensus_13562#2      ------------------------------------------------------------
consensus_13562#1      ------------------------------------------------------------
                                                                                   

consensus_13562#0      GTGAGGAGGCGGCGGCGGTGGGATTTTGGGCGCGGCGAAGCGGGGCGTGTTTTGTGCTGG 540
consensus_13562#2      ------------------------------------------------------------
consensus_13562#1      ---------------------------------------GCTGGTGTATATTAAGCAGCC 21
                                                                                   

consensus_13562#0      CGATACGAAGGAGCATTGAAGGCG-GACGCCCAGCGGGGAGAGCGAGCGGCTCGACGCCG 599
consensus_13562#2      ---AGCGGCGAGGAA--GGAGGCG-G-CGCCCAGCGGGGAGAGCGAGCGGCTCGACGCCG 53
consensus_13562#1      ACATACCCCAATCAAGTACGCTCTTGTTTTCCTTCAAACAAATTGGCAAGCAGTAGCTCA 81
                            *        *       *  *    **  *    * *  *    **   *   * 

consensus_13562#0      ACG-GCCATGGCGC-TGCT-GATGGATCC-CGGGGCGGGAGGCC--CCCTGACGGAGAGC 653
consensus_13562#2      ACG-GCCATGGCGC-TGCT-GATGGATCC-CGGGGCGGGAGGCC--CCCTGACGGAGAGC 107
consensus_13562#1      ACTTGCTCTGGTGTGTGCTTGACATATTTTCCGGGTGCCTTGCTGTTCTCGATGAGAGGC 141
                       **  **  *** *  **** **   **   * *** *    **    *  ** *    **

consensus_13562#0      GAGAAGGCCGACCTGGACGCCAT---CGCCGCCATCAAGGAGTCGGCGGCGGCAGAGTAC 710
consensus_13562#2      GAGAAGGCCGACCTGGACGCCAT---CGCCGCCATCAAGGAGTCGGCGGCGGCAGAGTAC 164
consensus_13562#1      CCAAAGCGCTTTAGGAAAGATCTGTATGCAGGCAACAGGATTTCAGCAACTGCAAGTCTT 201
                          ***  *     * * *   *    ** * ** ** *   ** **  * ***      

consensus_13562#0      AAGGAGAAGGGCAACCGGCTCGTCAAGATGGGCCGGAGCCACTACGCC-----GACGCCG 765
consensus_13562#2      AAGGAGAAGGGCAACCGGCTCGTCAAGATGGGCCGGAGCCACTACGCC-----GACGCCG 219
consensus_13562#1      AGTGACTCACGCAACTCCGTATCTGGAACAGACCAGCCACACTGCTTTTGATAAATCTCC 261
                       *  **     *****    *       *  * ** *   **** *         *   * 

consensus_13562#0      TCGACTGCTACACCAAGGCC--ATTGCCCAGATGGAGCCGCTGCCGCCGCCGCCGGTGCC 823
consensus_13562#2      TCGACTGCTACACCAAGGCC--ATTGCCCAGATGGAGCCGCTGCCGCCGCCGCCGGTGCC 277
consensus_13562#1      TCAAATAGCACCCTCGTGCCGAATTCGGCACGAGGAGACTTCATCATCCCTGCAATTCCT 321
                       ** * *   ** *    ***  ***   **   **** *     *  * * **   * * 

consensus_13562#0      AT--CCCCCGACGCCTCCGTCCTCTTCGCCAACCGCGCCCACGTCAAC-CTCCTCCTCGG 880
consensus_13562#2      AT--CCCCCGACGCCTCCGTCCTCTTCGCCAACCGCGCCCACGTCAAC-CTCCTCCTCGG 334
consensus_13562#1      GTGTTCTTTGTTGTTTCAAGAAAATCCACCTTTTACAGAAAGTTCAAGGCAGGAAACTGG 381
                        *   *   *  *  **       * * **     *    *  ****  *        **

consensus_13562#0      CAACCACCGCCGCGCCCTCGACGACGCCGCCCGTGCCGTCCAGCTCTCTCCCTCCAACGT 940
consensus_13562#2      CAACCACCGCCGCGCCCTCGACGACGCCGCCCGTGCCGTCCAGCTCTCTCCCTCCAACGT 394
consensus_13562#1      TCTTTGCCGTAATGCTTAGCGTGATTCAGTTTGGCACATTTGGAAGATGATTAGTGCGGT 441
                             ***    **       **  * *   *   * *   *               **

consensus_13562#0      CAAGGCGTACTACCGGGCGGCGAAAGCGGCGATTGCTCTCGGCTTGCTGCCGGAGGCGGC 1000
consensus_13562#2      CAAGGCGTACTACCGGGCGGCGAAAGCG-------------------------------- 422
consensus_13562#1      --ACGCGTATGATCAGAGAAGAAAAGCTGGCCACCTAGTCATTCTTGTATGGTTTTATAT 499
                         * *****  * * *      *****                                 

consensus_13562#0      GGCCTTCTGCCGGCGGGGAATCGAGCAGGACCCTGCTAATGAGGAGCTCAAGAAATTGCT 1060
consensus_13562#2      ------------------------------------------------------------
consensus_13562#1      GTTGCTTTATAGAATGATGAGGTGTGTTCTTTCCTGTATTTGGTACAATTCTCAAGTATT 559
                                                                                   

consensus_13562#0      CGCACAAGTGGACGCCCAACAGAGTGAGCAAGATCGTCATAGGGCCAAGGTTGCGCAGGC 1120
consensus_13562#2      ------------------------------------------------------------
consensus_13562#1      TTCCTATCCTTTGCTTGAGATGCTCAGTATGCCGTTTCTGGAGAAACACACTGAGAATGT 619
                                                                                   

consensus_13562#0      CGTGTCCGCTGCGAAGGATATTGTTGCCGCTGTAGAGAAGAGGGGGTTGAAGCTTGGGAA 1180
consensus_13562#2      ------------------------------------------------------------
consensus_13562#1      ACTTATGTATGGACAGCTTTGGGCCTGATTTAGCGCTTGGCACAGTGA------------ 667
                                                                                   

consensus_13562#0      GGCAGCATATCAAGAGCTTACCGGTGTAAAGAAGCCGAAGTTGGATGAGCGGGGTGTGCT 1240
consensus_13562#2      ------------------------------------------------------------
consensus_13562#1      ------------------------------------------------------------
                                                                                   

consensus_13562#0      TCACTGGCCAGTTCTTCTGCTCTACCCGGAGGTCATGTCGAGTGACTTCATCGAGGATTT 1300
consensus_13562#2      ------------------------------------------------------------
consensus_13562#1      ------------------------------------------------------------
                                                                                   

consensus_13562#0      TCCGGAGACAGATACTTTCGTGCCCCACCTTGATGTCATGTTCTCAGAAAGTTCTCCACC 1360
consensus_13562#2      ------------------------------------------------------------
consensus_13562#1      ------------------------------------------------------------
                                                                                   

consensus_13562#0      ATTACCATGGGATGATAAACACGCTTACACACGGGATGCTGTTGAGTTATATTATCAGGC 1420
consensus_13562#2      ------------------------------------------------------------
consensus_13562#1      ------------------------------------------------------------
                                                                                   

consensus_13562#0      TGGCGTTGGCACAGTTCTGTCCAAAAGTGAAATATTGAAAATTCTTTTGGAAGGCACTAT 1480
consensus_13562#2      ------------------------------------------------------------
consensus_13562#1      ------------------------------------------------------------
                                                                                   

consensus_13562#0      GGACTCAAAGTCACTTCCTGAAAGCCTGCTTGATGAGGAAGATGGAGAAAATGATGATGG 1540
consensus_13562#2      ------------------------------------------------------------
consensus_13562#1      ------------------------------------------------------------
                                                                                   

consensus_13562#0      CAAGAGCAGCACAATTACATCATCAGATAAGGGTTCTGTGAAGTGGATCAATGTAAAAGA 1600
consensus_13562#2      ------------------------------------------------------------
consensus_13562#1      ------------------------------------------------------------
                                                                                   

consensus_13562#0      GGGAAAAACTCTTCAAGAAGTGCTGCAGCATAAAGACTTCATCATCCCTGCAATTCCTGT 1660
consensus_13562#2      ------------------------------------------------------------
consensus_13562#1      ------------------------------------------------------------
                                                                                   

consensus_13562#0      GTTCTTTGTTGTTTCAAGAAAATCCACCTTTTACAGAAAGTTCAAGGCAGGAAACTGGTC 1720
consensus_13562#2      ------------------------------------------------------------
consensus_13562#1      ------------------------------------------------------------
                                                                                   

consensus_13562#0      TTTGCCGTAATGCTTAGCGTGATTCAGTTTGGCACATTTGGAAGATGATTAGTGCGGTAC 1780
consensus_13562#2      ------------------------------------------------------------
consensus_13562#1      ------------------------------------------------------------
                                                                                   

consensus_13562#0      GCGTATGATCAGAGAAGAAAAGCTGGCCACCTAGTCATTCTTGTATGGTTTTATATGTTG 1840
consensus_13562#2      ------------------------------------------------------------
consensus_13562#1      ------------------------------------------------------------
                                                                                   

consensus_13562#0      CTTTATAGAATGATGAGGTGTGTTCTTTCCTGTATTTGGTACAATTCTCAAGTATTTTCC 1900
consensus_13562#2      ------------------------------------------------------------
consensus_13562#1      ------------------------------------------------------------
                                                                                   

consensus_13562#0      TATCCTTTGCTTGAGATGCTCAGTATGCCGTTTCTGGAGAAACACACTGAGAATGTACTT 1960
consensus_13562#2      ------------------------------------------------------------
consensus_13562#1      ------------------------------------------------------------
                                                                                   

consensus_13562#0      ATGTATGGACAGCTTTGGGCCTGATTTAGCGCTTGGCACAGTGATGGTATCTTGTACGCC 2020
consensus_13562#2      ------------------------------------------------------------
consensus_13562#1      ------------------------------------------------------------
                                                                                   

consensus_13562#0      ATATCTACCAACCAATTTTAGCACCAAACTTTTCTTTAAGAGAA 2064
consensus_13562#2      --------------------------------------------
consensus_13562#1      --------------------------------------------