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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_136#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1086 fasta sequence
[AAACCTCTCAAACCCCACAGGCACCGGACCACCACCACCATTGGCACCACCTCGCATCACACTCTCTCGCTCGCCATGAGCTCCCGCGACGCCGCCGCCACGTTCCATGTCTACCAGCCCGTGCAGATCCCGACGGCCACGGTGGCGCCCGCTGCGGCAGTGTCGGCGGCGCCGGCAGAGGCCGTCGCCCAGCTGGTCCCGGCGCCGAGCAAGAAGGCGGCCGGCGCGGCGGGTGGGAAGGACCGGCACAGCAAGGTGAACGGGCGCGGGCGGCGCGTGCGGATGCCGATCGTGTGCGCGGCGCGGGTGTTCCAGCTCACGCGGGAGCTGGGGCTCAAGTCCGACGGCCAGACCATCGAGTGGCTGCTCCGCCAGGCCGAGCCGTCCATCCTCGCCGCCACGGGGACCGGCACCACCCCGGCCGCCTTCGTCTCCTCCTCCGCGCCGTCCACCTCCTCCTCGCACCAGCACACCCTCCTCGGCAAGCGCCAGCGCCAGGAGTCCGCCGCCGCCGACGCCGTCTCCGTCGCCGGCGCCGCGTCCGCGTTCTGGGCGGCGCTGCCCGCACCAGGCCGGCCCGACGCCTGGGGCTTCTCCCCGCTGGACGCGCAGCCGACGTACGTGCCGATGGCGCAGGCGCACCACCACCACCTCAACCTCCTCGCCGCGCTCTCCGGCGCCGCCAGGCGCGCCGAGGAGGAGTCCCGGTGAATCACGCACAGCAGCATGCATCTTCCGAGCTCTGACACGTCTTTCGCTCAATTCACCGACGCGTACTGCACTGGCGTCCGTACGCCTTGTTCTTGGGACAGTTCTTGATTGGAGTGTGCTTCTTCTCTCTACCCCGTGGATCGATCGTTTTGCCTTCTTCCTGTGCGGTTCATCAATTGCTCAAGATGAAATTAATTGTTGCTGTGGTGTTTAAGCTCAAAACTGTAAATACGAGTCCTTAGATCTCATCTTACTCCTACAAATTCCAGCGCCGCATGTGTTTGTGTGTTTGCCACTTGTTTCCAGCTCTTGTGCTATGATTCCATGGAACTTGTTTCAGTTTAGCTTCATCTACATCGTTGTCAGACCAAATCA]
[+] EMBL AK061568 [AAACCTCTCAAACCCCACAGGCACCGGACCACCACCACCATTGGCACCACCTCGCATCACACTCTCTCGCTCGCCATGAGCTCCCGCGACGCCGCCGCCACGTTCCATGTCTACCAGCCCGTGCAGATCCCGACGGCCACGGTGGCGCCCGCTGCGGCAGTGTCGGCGGCGCCGGCAGAGGCCGTCGCCCAGCTGGTCCCGGCGCCGAGCAAGAAGGCGGCCGGCGCGGCGGGTGGGAAGGACCGGCACAGCAAGGTGAACGGGCGCGGGCGGCGCGTGCGGATGCCGATCGTGTGCGCGGCGCGGGTGTTCCAGCTCACGCGGGAGCTGGGGCTCAAGTCCGACGGCCAGACCATCGAGTGGCTGCTCCGCCAGGCCGAGCCGTCCATCCTCGCCGCCACGGGGACCGGCACCACCCCGGCCGCCTTCGTCTCCTCCTCCGCGCCGTCCACCTCCTCCTCGCACCAGCACACCCTCCTCGGCAAGCGCCAGCGCCAGGAGTCCGCCGCCGCCGACGCCGTCTCCGTCGCCGGCGCCGCGTCCGCGTTCTGGGCGGCGCTGCCCGCACCAGGCCGGCCCGACGCCTGGGGCTTCTCCCCGCTGGACGCGCAGCCGACGTACGTGCCGATGGCGCAGGCGCACCACCACCACCTCAACCTCCTCGCCGCGCTCTCCGGCGCCGCCAGGCGCGCCGAGGAGGAGTCCCGGTGAATCACGCACAGCAGCATGCATCTTCCGAGCTCTGACACGTCTTTCGCTCAATTCACCGACGCGTACTGCACTGGCGTCCGTACGCCTTGTTCTTGGGACAGTTCTTGATTGGAGTGTGCTTCTTCTCTCTACCCCGTGGATCGATCGTTTTGCCTTCTTCCTGTGCGGTTCATCAATTGCTCAAGATGAAATTAATTGTTGCTGTGGTGTTTAAGCTCAAAACTGTAAATACGAGTCCTTAGATCTCATCTTACTCCTACAAATTCCAGCGCCGCATGTGTTTGTGTGTTTGCCACTTGTTTCCAGCTCTTGTGCTATGATTCCATGGAACTTGTTTCAGTTTAGCTTCATCTACATCGTTGTCAGACCAAATCA]
consensusID : consensus_136#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 922 fasta sequence
[GACCCTAGCTACCTGTTCAGTGTTCAATTCGCACGGAAAGCCATGGCCTCCCGCGACGCCGCCACCTTCCAGGTCTACCGGCCCATGGCAATGCCAACGCCGGCGGCGCTGCCACCGTCGTCCCAGCAGATCACAATGCCGTTCACGGCGGCGCTCGTGGACGCCGTGCTCCCAGCTCCCCGAAAGGCGGCGGCGACGCAGGGCGGCAAGGACCGGCACAGCAAGGTGAACGGGCGCGGCCGGCGCGTGCGCATGCCGATCGTCTGCGCGGCGCGCGTGTTCCAGCTCACCCGCGAGCTGGGGCTCAAGTCCGACGGCCAGACCATCGAGTGGCTGCTCCGGCAGGCCGAGCCGTCCATCCTCGCCGCCACCGGCTCCGGCACCACCCCGGCCGTCTTCTCCTGCTCGTCCGCCCCCTCCACCGCCTCCTCCTCCTTCCTCCTCGGCAAGCGCCCGCGCCAGGAGGACCACGAGGCGCCGACGTTCTGGGAGGCGCTGCAGCAACAGCCGCGGCCCGCCGTGTCGTCGTGGGGTGCCCTCGCCTCGCCGTCGCAGGAGGCGCAGGCGTACGCGTCGTCGGTGGCGCAGGTCCACCACCTCAACCTACTCTCCGCGCTCTCCGGCGCCGCCACGAGACGGCCAGCACAGGAGGAGTCCCGGTGATCGCGCGCCGCAGCTATGCAGCTCAATTTGCGACGTGATTGCATGCGCGCGCGGGGTTGATTTGTACTTGGAGCTAGTCTTGCTTTGTCTTGTGTGTATGGCTTGCCGTACTTAATTTCCCATTTCCGCTGGTGTTTCCATGGGTGAATTTTGTGTGAATTTGCTTGATTTTAGGCCGGAGAATACTAGTAAGTAGCTGGTGAAGAATCAAGAATGTGATCAGATAGATCATCAGAGGCAGCAATTGTAGATACCAAGT]
[+] EMBL AK064708 [GACCCTAGCTACCTGTTCAGTGTTCAATTCGCACGGAAAGCCATGGCCTCCCGCGACGCCGCCACCTTCCAGGTCTACCGGCCCATGGCAATGCCAACGCCGGCGGCGCTGCCACCGTCGTCCCAGCAGATCACAATGCCGTTCACGGCGGCGCTCGTGGACGCCGTGCTCCCAGCTCCCCGAAAGGCGGCGGCGACGCAGGGCGGCAAGGACCGGCACAGCAAGGTGAACGGGCGCGGCCGGCGCGTGCGCATGCCGATCGTCTGCGCGGCGCGCGTGTTCCAGCTCACCCGCGAGCTGGGGCTCAAGTCCGACGGCCAGACCATCGAGTGGCTGCTCCGGCAGGCCGAGCCGTCCATCCTCGCCGCCACCGGCTCCGGCACCACCCCGGCCGTCTTCTCCTGCTCGTCCGCCCCCTCCACCGCCTCCTCCTCCTTCCTCCTCGGCAAGCGCCCGCGCCAGGAGGACCACGAGGCGCCGACGTTCTGGGAGGCGCTGCAGCAACAGCCGCGGCCCGCCGTGTCGTCGTGGGGTGCCCTCGCCTCGCCGTCGCAGGAGGCGCAGGCGTACGCGTCGTCGGTGGCGCAGGTCCACCACCTCAACCTACTCTCCGCGCTCTCCGGCGCCGCCACGAGACGGCCAGCACAGGAGGAGTCCCGGTGATCGCGCGCCGCAGCTATGCAGCTCAATTTGCGACGTGATTGCATGCGCGCGCGGGGTTGATTTGTACTTGGAGCTAGTCTTGCTTTGTCTTGTGTGTATGGCTTGCCGTACTTAATTTCCCATTTCCGCTGGTGTTTCCATGGGTGAATTTTGTGTGAATTTGCTTGATTTTAGGCCGGAGAATACTAGTAAGTAGCTGGTGAAGAATCAAGAATGTGATCAGATAGATCATCAGAGGCAGCAATTGTAGATACCAAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_136#0 AAACCTCTCAAACCCCACAGGCACCGGACCACCACCACCATTGGCACCACCTC-GCATCA 59
consensus_136#1 -----------------------------------GACCCTAGCTACCTGTTCAGTGTTC 25
*** * * *** ** * *
consensus_136#0 CACTCTCTCGCTC-GCCATGAGCTCCCGCGACGCCGCCGCCACGTTCCATGTCTACCAGC 118
consensus_136#1 AATTCGCACGGAAAGCCATGGCCTCCCGCGACGCCGCCACC---TTCCAGGTCTACCGGC 82
* ** * ** ****** **************** ** ***** ******* **
consensus_136#0 CCGTGCAGATCCCGACGGCCACGGTGGCGCC-----CGCTGCGGCAG-TGTCGGCGGCGC 172
consensus_136#1 CCATGGCAATGCCAACGCCGGCGGCGCTGCCACCGTCGTCCCAGCAGATCACAATGCCGT 142
** ** ** ** *** * *** * *** ** * **** * * * **
consensus_136#0 ---CGGCAGAGGCCGTCGCCCAGCTGGTCCCGGCGCCGAGCAAGAAGGCGGCCGGCGCGG 229
consensus_136#1 TCACGGCGGCGCTCGTGGACGCCGTGCTCCCAGCTCCCCGAAAGGCGGCGGC-GACGCA- 200
**** * * *** * * ** **** ** ** * *** ****** * ***
consensus_136#0 CGGGTGGGAAGGACCGGCACAGCAAGGTGAACGGGCGCGGGCGGCGCGTGCGGATGCCGA 289
consensus_136#1 -GGGCGGCAAGGACCGGCACAGCAAGGTGAACGGGCGCGGCCGGCGCGTGCGCATGCCGA 259
*** ** ******************************** *********** *******
consensus_136#0 TCGTGTGCGCGGCGCGGGTGTTCCAGCTCACGCGGGAGCTGGGGCTCAAGTCCGACGGCC 349
consensus_136#1 TCGTCTGCGCGGCGCGCGTGTTCCAGCTCACCCGCGAGCTGGGGCTCAAGTCCGACGGCC 319
**** *********** ************** ** *************************
consensus_136#0 AGACCATCGAGTGGCTGCTCCGCCAGGCCGAGCCGTCCATCCTCGCCGCCACGGGGACCG 409
consensus_136#1 AGACCATCGAGTGGCTGCTCCGGCAGGCCGAGCCGTCCATCCTCGCCGCCACCGGCTCCG 379
********************** ***************************** ** ***
consensus_136#0 GCACCACCCCGGCCGCCTTCGTCTCCTCCTCCGCGCCGTCCACCTCCTCCTCGCACCAGC 469
consensus_136#1 GCACCACCCCGGCCGTCTTCTCCTGCTCGTCCGCCCCCTCCACCGCCTCCTCCTCCT--- 436
*************** **** ** *** ***** ** ****** ******* *
consensus_136#0 ACACCCTCCTCGGCAAGCGCCAGCGCCAGGAGTCCGCCGCCGCCGACGCCGTCTCCGTCG 529
consensus_136#1 ---TCCTCCTCGGCAAGCGCCCGCGCCAGGAGGACCACGA----GGCGCCGACGTTCTGG 489
***************** ********** * ** * ***** * * *
consensus_136#0 CCGGCGCCGCGTCCGCGTTCTGGGCGGCGCTGCCCGCACCAGGCCGGCCCGACGCCTGGG 589
consensus_136#1 GAGGCGCTGCAGCAACA--------GCCGCGGCCCGCCGTGTCGTCGTGGGGTGCCCTCG 541
***** ** * * * *** ****** * * *** *
consensus_136#0 GCTTCTCCCCGCTGGACGCGCAGCCGACGTACGTGCCGATGGCGCAGGCGCACCACCACC 649
consensus_136#1 CCTCGCCGTCGCAGGAGGCGCA---GGCGTACGCGTCGTCGGT---GGCGCAGGTCCACC 595
** * *** *** ***** * ****** * ** ** ****** *****
consensus_136#0 ACCTCAACCTCCTCGCCGCGCTCTCCGGCGCCGCCA------GGCGCGCCGAGGAGGAGT 703
consensus_136#1 ACCTCAACCTACTCTCCGCGCTCTCCGGCGCCGCCACGAGACGGCCAGCACAGGAGGAGT 655
********** *** ********************* *** ** *********
consensus_136#0 CCCGGTGAATCACGCACAGCAGC-ATGCATCTTCCGAGCTCTGACACGTCT---TTCGCT 759
consensus_136#1 CCCGGTGA-TCGCGCGCCGCAGCTATGCAGCT--CAATTTGCGACGTGATTGCATGCGCG 712
******** ** *** * ***** ***** ** * * * *** * * * ***
consensus_136#0 CAATTCACCGACGCGTACTGCACTGGCGTCCGTACGCCTTGTTCTTGGGACAGTTCTTGA 819
consensus_136#1 CGCGGGGTTGATTTGTACT----TGGAGCTAGTCTTGCTTTGTCTTGTG----TGTATGG 764
* ** ***** *** * ** *** ***** * * **
consensus_136#0 TTGGAGTGTGCTTCTTCTCTCTACCCCGTGGATCGATCGTTTTGCCTTCTTCCTGTGCGG 879
consensus_136#1 CTTGC-CGTACTTAATTTCCCATTTCCGCTGGTGTTTCCATGGGTGAATTTTGTGTGAAT 823
* * ** *** * ** * *** * * ** * * ** ****
consensus_136#0 TTCATCAATTGCTCAAGATGAAATTAATTGTTGCTGTGGTGTTTAAGCTCAAAACTGTAA 939
consensus_136#1 TTGCTTGATT-TTAGGCCGGAGAATACTAGTAAGTAGCTGGTGAAGAATCAAGAATGTGA 882
** * *** * ** * ** * ** * ** * **** * *** *
consensus_136#0 --ATACGAGTCCTTAGATCTCATC-TTACTCCTACAAATTCCAGCGCCGCATGTGTTTGT 996
consensus_136#1 TCAGATAGATCATCAGAGGCAGCAATTGTAGATACCAAGT-------------------- 922
* * ** * *** ** *** ** *
consensus_136#0 GTGTTTGCCACTTGTTTCCAGCTCTTGTGCTATGATTCCATGGAACTTGTTTCAGTTTAG 1056
consensus_136#1 ------------------------------------------------------------
consensus_136#0 CTTCATCTACATCGTTGTCAGACCAAATCA 1086
consensus_136#1 ------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||