cluster # 13612

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Oryza sativa
cluster # 13612 cluster # 13612 Sequences # 13 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13612#0 length = 1216 sequences # 1
consensus_13612#1 length = 1173 sequences # 9

consensus_13612#2 length = 705 sequences # 2
consensus_13612#3 length = 298 sequences # 1

consensusID : consensus_13612#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1216
fasta sequence

                              [GCGAGGAAGAACCGAAGAAGCAGCAGAGCAGAGATCACCTGCGATTGCGAGGGGAGGAGGCAGCGATGTGGCGGCGGCAAGTGGGTGCCCTTCTTCTCCGGCACCGATCCACGCCTTCCTCCACCCTCCGCCACCATCTCCCCCTCCCCGTCCCCGACCAGAGCCCACCTCTCGCTTCCAATCTTCTGCTCCGCCTCTTCACTTCTCAATCTGGAGAGGGGGGTGATGGTGCCACCAAGCCCTTCATTGCTTTCGTCTTAGGGGGTCCCGGGAGTGGGAAAGGTACGCAATGTGTCCGGATCGCTTCTGATTTTGGGTTTGCTCATTTGAGTGCTGGTGACCTTCTACGGAGTGAAATTTCAACTGGCAGTGAGAAAGGGGAGTTGATCTTAAATATAATAAAAGAAGGGAAGATTGTTCCATCAGAGATTACTGTTGAACTGATTAGAAAAGCTATGGAATCGAGCGATGCTAAAAGGGTTCTTATTGATGGTTTCCCAAGGTGTGAGGAAAACAGGATCGCCTTTGAAAGAATAACTGGAACAGAACCAGACCTTGTGATTTTCTTTGACTGCCCTGAGGATGAGATGGTTAAACGTTTACTAGGCCGTAACCAGGGACGAGTGGATGATAACATTGAAACAATCAAGAAGCGCCTAAAGGTGTTTGAGAGTCTAAATATTCCTGTTGTTGACTACTACACTTCAAGAGGAAAGGTTCACAAGATAAATGCAACCGGAACTGAAGAAGAAATCTTTGGAGCAGTCCACAAGCTGTTTTCCTCCTTAAGTCTATTCTCTCTCATTGAGGGCATTGGGAAGCGTGCAAATGGTGGGAAAAGTTTGCATCTGCAGCATGCATGGACGACGATTGGTCATGATGCTTTTTCTACAGCTGCAGCCCGGCGATAGATTAAGCGCCGGCTACTCTCTCTCTCCTGTTTTCTCACTCTTCCATGTAGGATTTATCTTAGATGAATAGTACTACCGCCTGCTGACTGTAACCTATTATACCTGCTCTTATGCTACCCAATTGCTTATTGGTTATTCTCTAGTACCAAACTGGCTCTGTATGCTTGCCAGTTGCCGTGTACTTAGGATATTTTAATCCTACGAGTCAAACTACTCTCTATATGCCTCCTTGTTTACAGGTCAATAAATTGAGAGATGCTACCAAGTTGTTTTCAAGCAACATTTTGTCATATATTAAAGCTCTC]

[+] EMBL AK068066             [GCGAGGAAGAACCGAAGAAGCAGCAGAGCAGAGATCACCTGCGATTGCGAGGGGAGGAGGCAGCGATGTGGCGGCGGCAAGTGGGTGCCCTTCTTCTCCGGCACCGATCCACGCCTTCCTCCACCCTCCGCCACCATCTCCCCCTCCCCGTCCCCGACCAGAGCCCACCTCTCGCTTCCAATCTTCTGCTCCGCCTCTTCACTTCTCAATCTGGAGAGGGGGGTGATGGTGCCACCAAGCCCTTCATTGCTTTCGTCTTAGGGGGTCCCGGGAGTGGGAAAGGTACGCAATGTGTCCGGATCGCTTCTGATTTTGGGTTTGCTCATTTGAGTGCTGGTGACCTTCTACGGAGTGAAATTTCAACTGGCAGTGAGAAAGGGGAGTTGATCTTAAATATAATAAAAGAAGGGAAGATTGTTCCATCAGAGATTACTGTTGAACTGATTAGAAAAGCTATGGAATCGAGCGATGCTAAAAGGGTTCTTATTGATGGTTTCCCAAGGTGTGAGGAAAACAGGATCGCCTTTGAAAGAATAACTGGAACAGAACCAGACCTTGTGATTTTCTTTGACTGCCCTGAGGATGAGATGGTTAAACGTTTACTAGGCCGTAACCAGGGACGAGTGGATGATAACATTGAAACAATCAAGAAGCGCCTAAAGGTGTTTGAGAGTCTAAATATTCCTGTTGTTGACTACTACACTTCAAGAGGAAAGGTTCACAAGATAAATGCAACCGGAACTGAAGAAGAAATCTTTGGAGCAGTCCACAAGCTGTTTTCCTCCTTAAGTCTATTCTCTCTCATTGAGGGCATTGGGAAGCGTGCAAATGGTGGGAAAAGTTTGCATCTGCAGCATGCATGGACGACGATTGGTCATGATGCTTTTTCTACAGCTGCAGCCCGGCGATAGATTAAGCGCCGGCTACTCTCTCTCTCCTGTTTTCTCACTCTTCCATGTAGGATTTATCTTAGATGAATAGTACTACCGCCTGCTGACTGTAACCTATTATACCTGCTCTTATGCTACCCAATTGCTTATTGGTTATTCTCTAGTACCAAACTGGCTCTGTATGCTTGCCAGTTGCCGTGTACTTAGGATATTTTAATCCTACGAGTCAAACTACTCTCTATATGCCTCCTTGTTTACAGGTCAATAAATTGAGAGATGCTACCAAGTTGTTTTCAAGCAACATTTTGTCATATATTAAAGCTCTC]




>consensus_13612#0
GCGAGGAAGAACCGAAGAAGCAGCAGAGCAGAGATCACCTGCGATTGCGAGGGGAGGAGG
CAGCGATGTGGCGGCGGCAAGTGGGTGCCCTTCTTCTCCGGCACCGATCCACGCCTTCCT
CCACCCTCCGCCACCATCTCCCCCTCCCCGTCCCCGACCAGAGCCCACCTCTCGCTTCCA
ATCTTCTGCTCCGCCTCTTCACTTCTCAATCTGGAGAGGGGGGTGATGGTGCCACCAAGC
CCTTCATTGCTTTCGTCTTAGGGGGTCCCGGGAGTGGGAAAGGTACGCAATGTGTCCGGA
TCGCTTCTGATTTTGGGTTTGCTCATTTGAGTGCTGGTGACCTTCTACGGAGTGAAATTT
CAACTGGCAGTGAGAAAGGGGAGTTGATCTTAAATATAATAAAAGAAGGGAAGATTGTTC
CATCAGAGATTACTGTTGAACTGATTAGAAAAGCTATGGAATCGAGCGATGCTAAAAGGG
TTCTTATTGATGGTTTCCCAAGGTGTGAGGAAAACAGGATCGCCTTTGAAAGAATAACTG
GAACAGAACCAGACCTTGTGATTTTCTTTGACTGCCCTGAGGATGAGATGGTTAAACGTT
TACTAGGCCGTAACCAGGGACGAGTGGATGATAACATTGAAACAATCAAGAAGCGCCTAA
AGGTGTTTGAGAGTCTAAATATTCCTGTTGTTGACTACTACACTTCAAGAGGAAAGGTTC
ACAAGATAAATGCAACCGGAACTGAAGAAGAAATCTTTGGAGCAGTCCACAAGCTGTTTT
CCTCCTTAAGTCTATTCTCTCTCATTGAGGGCATTGGGAAGCGTGCAAATGGTGGGAAAA
GTTTGCATCTGCAGCATGCATGGACGACGATTGGTCATGATGCTTTTTCTACAGCTGCAG
CCCGGCGATAGATTAAGCGCCGGCTACTCTCTCTCTCCTGTTTTCTCACTCTTCCATGTA
GGATTTATCTTAGATGAATAGTACTACCGCCTGCTGACTGTAACCTATTATACCTGCTCT
TATGCTACCCAATTGCTTATTGGTTATTCTCTAGTACCAAACTGGCTCTGTATGCTTGCC
AGTTGCCGTGTACTTAGGATATTTTAATCCTACGAGTCAAACTACTCTCTATATGCCTCC
TTGTTTACAGGTCAATAAATTGAGAGATGCTACCAAGTTGTTTTCAAGCAACATTTTGTC
ATATATTAAAGCTCTC

consensusID : consensus_13612#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1173
fasta sequence

                              [AACTTGGGAGGAGGCGAGGAAGAACCGAAGAAGCAGCAGAGCAGAGATCACCTGCGATTGCGAGGGGAGGAGGCAGCGATGTGGCGGCGGCAAGTGGGTGCCCTTCTTCTCCGGCACCGATCCACGCCTTCCTCCACCCTCCGCCACCATCTCCCCCTCCCCGTCCCCGACCAGAGCCCACCTCTCGCTTCCAATCTTCTGCTCCGCCTCTTCACTTCTCAATCTGGAGAGGGGGGTGATGGTGCCACCAAGCCCTTCATTGCTTTCGTCTTAGGGGGTCCCGGGAGTGGGAAAGGTACGCAATGTGTCCGGATCGCTTCTGATTTTGGGTTTGCTCATTTGAGTGC-TGGTGACCTTCTAC-GGAGTGAAATTTCAAC-TGGCAGTGAG-AAAGGGGAGTTGATC-TTAAATATAATAAAA-GAA-GGGAAGATT-GTTCCATCAGAGATTACTG-TT-GAACTGATTAGAAAAGCTATGGAATCGAGCGATGCTAAAAGGGTTCTTATTGATGGTTTCCCAAGGTGTGAGGAAAACAGGATCGCCTTTGAAAGAATAACTGGAACAGAACCAGACCTTGTGATTTTCTTTGACTGCCCTGAGGATGAGATGGTTAAACGTTTACTAGGCCGTAACCAGGGACGAGTGGATGATAACATTGAAACAATCAAGAAGCGCCTAAAGGTGTTTGAGAGTCTAAATATTCCT-GTTGTTGACTACTACA-CTTCAAGAGGAAAGGTTCACAAGATAAATGCAACCGGAACTGAAGAAGAAATCTTTGGAGCAGTCCACAAGCTGTTTTCCTCCTTAAGGTTTTGAGACTTTTGTCTTCCACATAAGCAGGGGCCTTTGGCTGGAAGGACATCTTGTAGGAAGACCCACTTTGTCTAGCATCCAAAAGTTCTCTCTATTTCTCTCGTGTTCTTTTGGAAGCCTCACGTCTTTATTAAAACCATTGTATATATGTTTCACTATTATGAATGCCACCTGGTAATGGCTGGTGCTGACCTTCACGTTATCCTTGTCATGCCACAGCATGAAGAAGCATGAACAATAGTATGCTATTGTTGCACAGTGCTGTAACGCATTTTGGTCACAATAATCCTACAAACCTTTTGCTA--AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGT]

[+] EMBL AK071444             [AACTTGGGAGGAGGCGAGGAAGAACCGAAGAAGCAGCAGAGCAGAGATCACCTGCGATTGCGAGGGGAGGAGGCAGCGATGTGGCGGCGGCAAGTGGGTGCCCTTCTTCTCCGGCACCGATCCACGCCTTCCTCCACCCTCCGCCACCATCTCCCCCTCCCCGTCCCCGACCAGAGCCCACCTCTCGCTTCCAATCTTCTGCTCCGCCTCTTCACTTCTCAATCTGGAGAGGGGGGTGATGGTGCCACCAAGCCCTTCATTGCTTTCGTCTTAGGGGGTCCCGGGAGTGGGAAAGGTACGCAATGTGTCCGGATCGCTTCTGATTTTGGGTTTGCTCATTTGAGTGC TGGTGACCTTCTAC GGAGTGAAATTTCAAC TGGCAGTGAG AAAGGGGAGTTGATC TTAAATATAATAAAA GAA GGGAAGATT GTTCCATCAGAGATTACTG TT GAACTGATTAGAAAAGCTATGGAATCGAGCGATGCTAAAAGGGTTCTTATTGATGGTTTCCCAAGGTGTGAGGAAAACAGGATCGCCTTTGAAAGAATAACTGGAACAGAACCAGACCTTGTGATTTTCTTTGACTGCCCTGAGGATGAGATGGTTAAACGTTTACTAGGCCGTAACCAGGGACGAGTGGATGATAACATTGAAGCAATCAAGAAGCGCCTAAAGGTGTTTGAGAGTCTAAATATTCCT GTTGTTGACTACTACA CTTCAAGAGGAAAGGTTCACAAGATAAATGCAACCGGAACTGAAGAAGAAATCTTTGGAGCAGTCCACAAGCTGTTTTCCTCCTTAAGGTTTTGAGACTTTTGTCTTCCACATAAGCAGGGGCCTTTGGCTGGAAGGACATCTTGTAGGAAGACCCACTTTGTCTAGCATCCAAAAGTTCTCTCTATTTCTCTCGTGTTCTTTTGGAAGCCTCACGTCTTTATTAAAACCATTGTATATATGTTTCACTATTATGAATGCCACCTGGTAATGGCTGGTGCTGACCTTCACGTTATCCTTGTCATGCCACAGCATGAAGAAGCATGAACAATAGTATGCTATTGTTGCACAGTGCTGTAACGCATTTTGGTCACAATAATCCTACAA                                                                          ]
[+] EMBL AU094688             [                           AAGAAGCAGCAGAGCAGAGATCACCTGCGATTGCGAGGGGAGGAGGCAGCGATGTGGCGGCGGCAAGTGGGTGCCCTTCTTCTCCGGCACCGATCCACGCCTTCCTCCACCCTCCGCCACCATCTCCCCCTCCCCGTCCCCGACCAGAGCCCACCTCTCGCTTCCAATCTTCTGCTCCGCCTCTTCACTTCTCAATCTGGAGAGGGGGGTGATGGTGCCACCAAGCCCTTCATTGCTTTCGTCTTAGGGGGTCCCGGGAGTGGGAAAGGTACGCAATGTGTCCGGATCGCTTCTGATTTTGGGTTTGCTCATTTGAGTGC TGGTGACCTTCTAC GGAGTGAAATTTCAAC TGGCAGTGAG AAAGGGGAGTTGATC TTAAATATAATAAAA GAA GGGAAGATT GTTCCATCAGAGATTACTG TT GAACTGATTAGAAAAGCTATGGAATCGAGCGATGCTAAAAGGGTTCTTATTGATGGTTTCCCAAGGTGTGAGGAAAACAGGATCGCCTTTGAAAGAATAACTGGAACAGAACCAGACCTTGTGATTTTCTTTGACTGCCCTGAGGATGAGATGGTTAAACGTTTACTAGGCCGTAACCAGGGACGAGTGGATGATAACATTGAAACAATCAAGAAGCGCCTAAAGGTGTTTGAGAG CTAAATATTCCTGGTTGTTGACTACTACA CTTCAAGAGGAAAGG TCACAAGATAAATGCAACCGGAACTGAAG AGNAATCTTTGGAGCAGTCCACAAGCTG TTNCCCCCT                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU164177             [                           AAGAAGCAGCAGAGCAGAGATCACCTGCNATTGCNAGGGGAGGAGGCAGCGATGTGGCGGCGGCAAGTGGGTGCCCTTNTTCTCCGGCACCGATCCACGCCTTCCTCCACCCTCCGCCACCATCTCCCCCTCCCCGTCCCCGACCAGAGCCCACCTCTNGCTTCCAATCTTCTGCTCCGCCTCTTCACTTCTCAATCTGGAGAGGGGGGTGATGGTGCCACCAAGCCCTTCATTGCTTTCGTCTTAGGGGGTCCCGGGAGTGGGAAAGGTACGCAATGTGTCCGGNTCGCTTCTNATTTTGGGTTTGCTCATTTGAGTGCTTGGTGACCTTCTAC GGAGTGAAATTTCAAC TGGCAGTGAG AAAGGGGAGTTGATC TTAAATATAATAAAN GAAGGGGAAGATT GTTCCATCAGAGATTACTGTTT GACCTGATTAGGAAAa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU064338             [                           AAGAAGCAGCAGAGCAGAGATCACCTGCGATTGCGAGGGGAGGAGGCAGCGATGTGGCGGCGGCAAGTGGGTGCCCTTCTTCTCCGGCACCGATCCACGCCTTCCTCCACCCTCCGNCACCATCTCCCCCTCCCCGTCCCCGACCAGAGCCCACCTCTCGCTTCCAATCTTCTACTCCGCCTCTTCACTTCTCAATCTGGAGAGGGGGGTGATGGTGCCACCAAGCCCTTCATTGCTTTCGTCTTAGGGGGTCCCGGGAGTGGGAAAGGTACGCAATGTGTCCGGATCGCTTCTGATTTTGGGTTTGCTCATTTGAGTGC TGGTGACCTTCTACGGGAGTGAAATTTCAAC TGG ATNGAGNTTTTTTNTGTTGAGCTTTAAATATAATAAAAGGAA GGGGAGATTGGTTCCATCAGAGATTACTG TTGGAACNG TTAGAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU064298             [                           AAGAAGCAGCAGANANGAGATCACCTGCGATTGCGAGGGGAGGAGGCAGCGATGTGGCGGCGGCAAGTGGGTGCCCTTCTTCTCCGGCACCGATCCACGCCTTCCTCCACCCTCCGCCACCATCTCCCCCTCCCCGTCCCCGACCAGAGCCCACCTCTCGCTTCCAATCTTCTGCTCCGCCTCTTCACTTCTCAATCTGGAGAGGGGGGTGATGGTGCCACCAAGCCCTTCATTGCTTTCGTCTTAGGGGGTCCCGGGAGTNGGAAAGGTACGCAATGTGTCCGGATCGCTTCTGATTTTGGGTTTGCTCATTTGAGTGC TGGTGACCTTCTAC GGAGTGAAATTTCAACTTGGCAGTGAG AAAGGGGAGTTGATC TTAAATATAATAAAA GAA GGGAAGATT GTTNCATCAGAGATTACTGTTT GAACTGATTAGGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CA765781             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        gtGATGCTAAAAGGGTTCTTATTGATGGTTTCCCAAGGTGTGAGGAAAACAGGATCGCCTTCGAAAGAATAACTGGAACAGAACCAGACCTTGTGATTTTCTTTGACTGCCCTGAGGATGAGATGGTTAAACGTTTACTAGGCCGTAACCAGGGACGAGTGGATGATAACATTGAAACAATCAAGAAGCGCCTAAAGGTGTTTGAGAGTCTAAATATTCCT GTTGTTGACTACTACA CTTCAAGAGGAAAGGTTCACAAGATAAATGCAACCGGAACTGAAGAAGAAATCTTTGGAGCAGTCCACAAGCTGTTTTCCTCCTTAAGGTTTTGAGACTTTTGTCTTCCACATAAGCAGGGGCCTTTGGCTGGAAGGACCTCTTGTAGGAAGACCCACTTTGTCTAGCATCCAAAAGTTCTCTCTATTTCTCTCGTGTTCTTTTGGAAGCCTCACGTCTTTATTAAAACCATTGTATATATGTTTCACTATTATGAATGCCACCTGGTAATGGCTGGTGCTGACCTTAACGTTATCCTTGTCATGCCACAGCATGAAGAAGCATGAACAATAGTATGCTGTTGTTGCATAGTGCTGTAACGCATTTTGGTCACAATAATCCTACAAACCTTTTtgc                                                                ]
[+] EMBL AU066302             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TTTGAAAGAATAACTGGAACAGAACCAGACCTTGTGATTTTCTTTGACTGCCCTGAGGATGAGATGGTTAAACGTTTACTAGGCCGTAACCAGGGACGAGTGGATGATAACATTGAAACAATCAAGAAGCGCCTAAAGGTGTTTGAGAGTCTAAATATTCCT GTTGTTGACTACTACA CTTCAAGAGGAAAGGTTCACAAGATAAATGCAACCGGAACTGAAGAAGAAATCTTTGGAGCAGTCCACAAGCTGTTTTCCTCCTTAAGGTTTTGAGACTTTTGTCTTCCACATAAGCAGGGGCCTTTGGCTGGAAGGACATCTTGTAGGAAGA CCACTTTGTCTAGCATCCAAAAGTTCTCTCTATTTCTCTCGTGTTCTTTTGG AG CTCACGTCTTTAT  AAACCATTGTATATATGTTTCACTATTATG ATTCCA CTGNTAATAGCTGGTGCTGACCncac                                                                                                                                                                           ]
[+] EMBL AU161906             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ACCAGGAACGAGTGGATGATAACATTG AACAATCCAG AGCG CTAAAGGTGTNTGAGAGTCTAAATATTCCTGGTTNTTGACTACTACACCTTCAAGA GAAAGGTTCACAAGATAAATGCAACCGGAACTGAAGAAGAAATCTTTGGAGCAGTCCACAAGCTGTTTTCCTCCTTAAGGTTTTGAGACTTTTGTCTTCCACATAAGCAGGGGCCTNTGGCTGGAAGGACATCTTGTAGGAAGACCCACTTTGTCTAGCATCCAAAAGTTCTCTCTATTTCTCTCGTGTTCTTTTGGAAGCCTCACGTCTTTATTAAAACCATTGTATATATGTTTCACTATTATGAATGCCACCTGGTAATGGCTGGTGCTGACCTTCACGTTATCCTTGTCATGCCACAGCATGAAGAAGCATGAACAATAGTATGCTATTGTTGCACAGTGCTGTAACGCATTTTGGTCACAATAATCCTACAAACCTTTTGCTA  AAAAAA                                                       ]
[+] EMBL CF328865             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GCTGGTGCTGACCTTCACGTTATCCTTGTCATGCCACAGCATGAAGAAGCATGAACAATAGTATGCTATTGTTGCACAGTGCTGTAACGCATTTTGGTCACAATAATCCTACAAACCTTTTGCTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGT]




>consensus_13612#1
AACTTGGGAGGAGGCGAGGAAGAACCGAAGAAGCAGCAGAGCAGAGATCACCTGCGATTG
CGAGGGGAGGAGGCAGCGATGTGGCGGCGGCAAGTGGGTGCCCTTCTTCTCCGGCACCGA
TCCACGCCTTCCTCCACCCTCCGCCACCATCTCCCCCTCCCCGTCCCCGACCAGAGCCCA
CCTCTCGCTTCCAATCTTCTGCTCCGCCTCTTCACTTCTCAATCTGGAGAGGGGGGTGAT
GGTGCCACCAAGCCCTTCATTGCTTTCGTCTTAGGGGGTCCCGGGAGTGGGAAAGGTACG
CAATGTGTCCGGATCGCTTCTGATTTTGGGTTTGCTCATTTGAGTGCTGGTGACCTTCTA
CGGAGTGAAATTTCAACTGGCAGTGAGAAAGGGGAGTTGATCTTAAATATAATAAAAGAA
GGGAAGATTGTTCCATCAGAGATTACTGTTGAACTGATTAGAAAAGCTATGGAATCGAGC
GATGCTAAAAGGGTTCTTATTGATGGTTTCCCAAGGTGTGAGGAAAACAGGATCGCCTTT
GAAAGAATAACTGGAACAGAACCAGACCTTGTGATTTTCTTTGACTGCCCTGAGGATGAG
ATGGTTAAACGTTTACTAGGCCGTAACCAGGGACGAGTGGATGATAACATTGAAACAATC
AAGAAGCGCCTAAAGGTGTTTGAGAGTCTAAATATTCCTGTTGTTGACTACTACACTTCA
AGAGGAAAGGTTCACAAGATAAATGCAACCGGAACTGAAGAAGAAATCTTTGGAGCAGTC
CACAAGCTGTTTTCCTCCTTAAGGTTTTGAGACTTTTGTCTTCCACATAAGCAGGGGCCT
TTGGCTGGAAGGACATCTTGTAGGAAGACCCACTTTGTCTAGCATCCAAAAGTTCTCTCT
ATTTCTCTCGTGTTCTTTTGGAAGCCTCACGTCTTTATTAAAACCATTGTATATATGTTT
CACTATTATGAATGCCACCTGGTAATGGCTGGTGCTGACCTTCACGTTATCCTTGTCATG
CCACAGCATGAAGAAGCATGAACAATAGTATGCTATTGTTGCACAGTGCTGTAACGCATT
TTGGTCACAATAATCCTACAAACCTTTTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGT

consensusID : consensus_13612#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 705
fasta sequence

                              [TCNCCCTTTGAAGGAATAACTGGAAACCGGAACCCAGCCCTTGGGATTTTCCTTTGAACTGCCCCTGAGGATGAGATTGGTTAACCGTTTACTAGGCCGTAACCAGGGACGAAGTGGATGATAACATTGAAACAATCAAGAAGCGCCTAAAGGTGTTTGAGAGTCTAAATATTCCCTGTTGTTGACTACTACACTTCCAAGAGGAAAGGTTCACAAGATAAATGCAACCGGAACTGAAGAAGAAATCCTTTGGAGCAGTCCACAAGCTGTTTTCCCCCTTAAGGTTTTGAGACTTTTGTCTTCCACATAAGCCAGGGGCCTTTGGCTGGAAGGACATCTTGTAGGAAGACCCACTTTGTCTAGCATCCAAAAGTTCTCTCTATTTCTCTCGTGTTCTTTTGGAAGCCTCACGTCTTTATTAAAACCATTGTATATATGTTTCACTATTATGAATGCCACCTGGTAATGGCTGGTGCTGACCTTCACGTTATCCTTGTCATGCCACAGCATGAAGAAGCATGAACAATAGTATGCTATTGTTGCACAGTGCTGTAACGCATTTTGGTCACAATAATCCTACAAACCTTTTGCTATTACCTTGGGTAGTCCTATGGTAGGCGAATGTAGTTCATGTATGACCACTATGATGATGACCGATATTAGGAATAATGTTTGTTTGCTTGAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL C99569               [TCNCCCTTTGAAGGAATAACTGGAAACCGGAACCCAGCCCTTGGGATTTTCCTTTGAACTGCCCCTGAGGATGAGATTGGTTAACCGTTTACTAGGCCGTAACCAGGGACGAAGTGGATGATAACATTGAAACAATCAAGAAGCGCCTAAAGGTGTTTGAGAGTCTAAATATTCCCTGTTGTTGACTACTACACTTCCAAGAGGAAAGGTTCACAAGATAAATGCAACCGGAACTGAAGAAGAAATCCTTTGGAGCAGTCCACAAGCTGTTTTCCCCCTTAAGGTTTTGAGACTTTTGTCTTCCACATAAGCCAGGGGCCTTTGGCTGGAAGGACATCTTGTAGGAAGACCCACTTTGTCTAGCATCCAAAAGTTCTCTCTATTTCTCTCGTGTTCTTTTGGAAGCCTCACGTCTTTATTAAAACCATTGTATATATGTTTCACTATTATGAATGCCACCTGGTAATGGCTGGTGCTGACCTTCACGTTATCCTTGTCATGCCACAGCATGAAGAAGCATGAACAATAGTATGCTATTGTTGCACAGTGCTGTAACGCATTTTGGTCACAATAATCCTACAAACCTTTTGCTATTACCTTGGGTAGTCCTATGGTAGGCGAATGTAGTTCATGTATGACCACTATGATGATGACCGATATTAGGAATAATGTTTGTTTGCTTGAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL C99540               [                                                                                                                                                                                                                                                                                                                                          AGGACANCTTGTGGGAANACCCA TTTGTCTAGCA CCCAAANTTCTCTCTATTTCTCTCGTGTTCTTTTGGAAGCCTCACGTCTTTATTAAAACCATTGTATATATGTTTCACTATTATGAA GCCACCTGGTAATGGCTGGTGCTGACCTTCACGTTATCCTTGTCATGCCACAGCATGAAGAAGCATGAACAATAGTATGCTATTGTTGCACAGTGCTGTAACGCATTTTGGTCACAATAATCCTACAAACCTTTTGCTATTACCTTGGGTAGTCCTATGGTAGGCGAATGTAGTTCATGTATGACCACTATGATGATGACCGATATTAGGAATAATGTTTGTTTGCTTGAAAAAAAAAAAAAAAAAAAAAA]




>consensus_13612#2
TCNCCCTTTGAAGGAATAACTGGAAACCGGAACCCAGCCCTTGGGATTTTCCTTTGAACT
GCCCCTGAGGATGAGATTGGTTAACCGTTTACTAGGCCGTAACCAGGGACGAAGTGGATG
ATAACATTGAAACAATCAAGAAGCGCCTAAAGGTGTTTGAGAGTCTAAATATTCCCTGTT
GTTGACTACTACACTTCCAAGAGGAAAGGTTCACAAGATAAATGCAACCGGAACTGAAGA
AGAAATCCTTTGGAGCAGTCCACAAGCTGTTTTCCCCCTTAAGGTTTTGAGACTTTTGTC
TTCCACATAAGCCAGGGGCCTTTGGCTGGAAGGACATCTTGTAGGAAGACCCACTTTGTC
TAGCATCCAAAAGTTCTCTCTATTTCTCTCGTGTTCTTTTGGAAGCCTCACGTCTTTATT
AAAACCATTGTATATATGTTTCACTATTATGAATGCCACCTGGTAATGGCTGGTGCTGAC
CTTCACGTTATCCTTGTCATGCCACAGCATGAAGAAGCATGAACAATAGTATGCTATTGT
TGCACAGTGCTGTAACGCATTTTGGTCACAATAATCCTACAAACCTTTTGCTATTACCTT
GGGTAGTCCTATGGTAGGCGAATGTAGTTCATGTATGACCACTATGATGATGACCGATAT
TAGGAATAATGTTTGTTTGCTTGAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_13612#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 298
fasta sequence

                              [GTCCACAAGCTGTTTTCCTCCTTAAGGTTTTGAGACTTTTGTCTTCCACATAAGCCAGGGGCCTTTGGCTGGAAGGACCTCTTGTAGGAAGACCCACTTTGTCTAGCATCCCAAAGTTCTCTCTATTTCTCTCGTGTTCTTTTGGAAGCCTCACGTCTTTATTAAAACCATTGTATATATGTTTCACTATTATGAATGCCACCTGGTAATGGCTGGTGCTGACCTTAACGTTATCCTTGTCATGCCACAGCATGAAGAAGCATGAACAATAGTATGCTATTGTTGCATAAAAAAAAAA]

[+] EMBL BQ908938             [GTCCACAAGCTGTTTTCCTCCTTAAGGTTTTGAGACTTTTGTCTTCCACATAAGCCAGGGGCCTTTGGCTGGAAGGACCTCTTGTAGGAAGACCCACTTTGTCTAGCATCCCAAAGTTCTCTCTATTTCTCTCGTGTTCTTTTGGAAGCCTCACGTCTTTATTAAAACCATTGTATATATGTTTCACTATTATGAATGCCACCTGGTAATGGCTGGTGCTGACCTTAACGTTATCCTTGTCATGCCACAGCATGAAGAAGCATGAACAATAGTATGCTATTGTTGCATAAAAAAAAAA]




>consensus_13612#3
GTCCACAAGCTGTTTTCCTCCTTAAGGTTTTGAGACTTTTGTCTTCCACATAAGCCAGGG
GCCTTTGGCTGGAAGGACCTCTTGTAGGAAGACCCACTTTGTCTAGCATCCCAAAGTTCT
CTCTATTTCTCTCGTGTTCTTTTGGAAGCCTCACGTCTTTATTAAAACCATTGTATATAT
GTTTCACTATTATGAATGCCACCTGGTAATGGCTGGTGCTGACCTTAACGTTATCCTTGT
CATGCCACAGCATGAAGAAGCATGAACAATAGTATGCTATTGTTGCATAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13612#2      ------------------------------------------------------------
consensus_13612#3      ------------------------------------------------------------
consensus_13612#1      AACTTGGGAGGAGGCGAGGAAGAACCGAAGAAGCAGCAGAGCAGAGATCACCTGCGATTG 60
consensus_13612#0      -------------GCGAGGAAGAACCGAAGAAGCAGCAGAGCAGAGATCACCTGCGATTG 47
                                                                                   

consensus_13612#2      ------------------------------------------------------------
consensus_13612#3      ------------------------------------------------------------
consensus_13612#1      CGAGGGGAGGAGGCAGCGATGTGGCGGCGGCAAGTGGGTGCCCTTCTTCTCCGGCACCGA 120
consensus_13612#0      CGAGGGGAGGAGGCAGCGATGTGGCGGCGGCAAGTGGGTGCCCTTCTTCTCCGGCACCGA 107
                                                                                   

consensus_13612#2      ------------------------------------------------------------
consensus_13612#3      ------------------------------------------------------------
consensus_13612#1      TCCACGCCTTCCTCCACCCTCCGCCACCATCTCCCCCTCCCCGTCCCCGACCAGAGCCCA 180
consensus_13612#0      TCCACGCCTTCCTCCACCCTCCGCCACCATCTCCCCCTCCCCGTCCCCGACCAGAGCCCA 167
                                                                                   

consensus_13612#2      ------------------------------------------------------------
consensus_13612#3      ------------------------------------------------------------
consensus_13612#1      CCTCTCGCTTCCAATCTTCTGCTCCGCCTCTTCACTTCTCAATCTGGAGAGGGGGGTGAT 240
consensus_13612#0      CCTCTCGCTTCCAATCTTCTGCTCCGCCTCTTCACTTCTCAATCTGGAGAGGGGGGTGAT 227
                                                                                   

consensus_13612#2      ------------------------------------------------------------
consensus_13612#3      ------------------------------------------------------------
consensus_13612#1      GGTGCCACCAAGCCCTTCATTGCTTTCGTCTTAGGGGGTCCCGGGAGTGGGAAAGGTACG 300
consensus_13612#0      GGTGCCACCAAGCCCTTCATTGCTTTCGTCTTAGGGGGTCCCGGGAGTGGGAAAGGTACG 287
                                                                                   

consensus_13612#2      ------------------------------------------------------------
consensus_13612#3      ------------------------------------------------------------
consensus_13612#1      CAATGTGTCCGGATCGCTTCTGATTTTGGGTTTGCTCATTTGAGTGCTGGTGACCTTCTA 360
consensus_13612#0      CAATGTGTCCGGATCGCTTCTGATTTTGGGTTTGCTCATTTGAGTGCTGGTGACCTTCTA 347
                                                                                   

consensus_13612#2      ------------------------------------------------------------
consensus_13612#3      ------------------------------------------------------------
consensus_13612#1      CGGAGTGAAATTTCAACTGGCAGTGAGAAAGGGGAGTTGATCTTAAATATAATAAAAGAA 420
consensus_13612#0      CGGAGTGAAATTTCAACTGGCAGTGAGAAAGGGGAGTTGATCTTAAATATAATAAAAGAA 407
                                                                                   

consensus_13612#2      ------------------------------------------------------------
consensus_13612#3      ------------------------------------------------------------
consensus_13612#1      GGGAAGATTGTTCCATCAGAGATTACTGTTGAACTGATTAGAAAAGCTATGGAATCGAGC 480
consensus_13612#0      GGGAAGATTGTTCCATCAGAGATTACTGTTGAACTGATTAGAAAAGCTATGGAATCGAGC 467
                                                                                   

consensus_13612#2      ---------------------------------------------------TCNCCCTTT 9
consensus_13612#3      ------------------------------------------------------------
consensus_13612#1      GATGCTAAAAGGGTTCTTATTGATGGTTTCCCAAGGTGTGAGGAAAACAGGATCGCCTTT 540
consensus_13612#0      GATGCTAAAAGGGTTCTTATTGATGGTTTCCCAAGGTGTGAGGAAAACAGGATCGCCTTT 527
                                                                                   

consensus_13612#2      GAAGGAATAACTGGAAACCGGAACCCAGCCCTTGGGATTTTCCTTTGAACTGCCCCTGAG 69
consensus_13612#3      ------------------------------------------------------------
consensus_13612#1      GAAAGAATAACTGGAAC---AGAACCAGACCTTGTGATTTTCTTTGA---CTGCCCTGAG 594
consensus_13612#0      GAAAGAATAACTGGAAC---AGAACCAGACCTTGTGATTTTCTTTGA---CTGCCCTGAG 581
                                                                                   

consensus_13612#2      GATGAGATTGGTTAACCGTTTACTAGGCCGTAACCAGGGACGAAGTGGATGATAACATTG 129
consensus_13612#3      ------------------------------------------------------------
consensus_13612#1      GATGAGAT-GGTTAAACGTTTACTAGGCCGTAACCAGGGACGA-GTGGATGATAACATTG 652
consensus_13612#0      GATGAGAT-GGTTAAACGTTTACTAGGCCGTAACCAGGGACGA-GTGGATGATAACATTG 639
                                                                                   

consensus_13612#2      AAACAATCAAGAAGCGCCTAAAGGTGTTTGAGAGTCTAAATATTCCCTGTTGTTGACTAC 189
consensus_13612#3      ------------------------------------------------------------
consensus_13612#1      AAACAATCAAGAAGCGCCTAAAGGTGTTTGAGAGTCTAAATATTCC-TGTTGTTGACTAC 711
consensus_13612#0      AAACAATCAAGAAGCGCCTAAAGGTGTTTGAGAGTCTAAATATTCC-TGTTGTTGACTAC 698
                                                                                   

consensus_13612#2      TACACTTCCAAGAGGAAAGGTTCACAAGATAAATGCAACCGGAACTGAAGAAGAAATCCT 249
consensus_13612#3      ------------------------------------------------------------
consensus_13612#1      TACACTTC-AAGAGGAAAGGTTCACAAGATAAATGCAACCGGAACTGAAGAAGAAATC-T 769
consensus_13612#0      TACACTTC-AAGAGGAAAGGTTCACAAGATAAATGCAACCGGAACTGAAGAAGAAATC-T 756
                                                                                   

consensus_13612#2      TTGGAGCAGTCCACAAGCTGTTTTCCCCCTTAAGGTTTTGAGACTTTTGTCTTCCACATA 309
consensus_13612#3      --------GTCCACAAGCTGTTTTCCTCCTTAAGGTTTTGAGACTTTTGTCTTCCACATA 52
consensus_13612#1      TTGGAGCAGTCCACAAGCTGTTTTCCTCCTTAAGGTTTTGAGACTTTTGTCTTCCACATA 829
consensus_13612#0      TTGGAGCAGTCCACAAGCTGTTTTCCTCCTTAAGTCTATTCT-CTCTCATTGAGGGCATT 815
                               ****************** *******  * *    ** *  *      *** 

consensus_13612#2      AGCCAGGG-GCCTTTGGCTGGAAGGACAT---CTTGTAGGAAG-ACCCACTTTGTCTAGC 364
consensus_13612#3      AGCCAGGG-GCCTTTGGCTGGAAGGACCT---CTTGTAGGAAG-ACCCACTTTGTCTAGC 107
consensus_13612#1      AGC-AGGG-GCCTTTGGCTGGAAGGACAT---CTTGTAGGAAG-ACCCACTTTGTCTAGC 883
consensus_13612#0      GGGAAGCGTGCAAATGGTGGGAAAAGTTTGCATCTGCAGCATGCATGGACGACGATTGG- 874
                        *  ** * **   ***  ****     *     ** ** * * *   **   *  * * 

consensus_13612#2      ATCCAAAAGTTCTCTCTATTTCT-----CTCGTGTTCTTTTGGAAGCC----------TC 409
consensus_13612#3      ATCCCAAAGTTCTCTCTATTTCT-----CTCGTGTTCTTTTGGAAGCC----------TC 152
consensus_13612#1      ATCCAAAAGTTCTCTCTATTTCT-----CTCGTGTTCTTTTGGAAGCC----------TC 928
consensus_13612#0      -TCATGATGCTTTTTCTACAGCTGCAGCCCGGCGATAGATTAAGCGCCGGCTACTCTCTC 933
                        **   * * * * ****   **     *  * * *   **    ***          **

consensus_13612#2      ACGTCTTTATTAAAACCATTGTATATATGTTTCACT----ATTATGAATGCCACCTGGTA 465
consensus_13612#3      ACGTCTTTATTAAAACCATTGTATATATGTTTCACT----ATTATGAATGCCACCTGGTA 208
consensus_13612#1      ACGTCTTTATTAAAACCATTGTATATATGTTTCACT----ATTATGAATGCCACCTGGTA 984
consensus_13612#0      TCTCCTGTTTTCTCACTCTTCCATGTAGGATTTATCTTAGATGAATAGTACTACCGCCTG 993
                        *  ** * **   **  **  ** ** * ** *      ** *  * * * ***   * 

consensus_13612#2      ATGGCTGGTGCTGACCTTCACGTTATCCTTGTCATGCCACAGCATGAAGAAGCATGAACA 525
consensus_13612#3      ATGGCTGGTGCTGACCTTAACGTTATCCTTGTCATGCCACAGCATGAAGAAGCATGAACA 268
consensus_13612#1      ATGGCTGGTGCTGACCTTCACGTTATCCTTGTCATGCCACAGCATGAAGAAGCATGAACA 1044
consensus_13612#0      CTGACTGTAACCTATTATACCTGCTCTTATGCTACCCAATTGCTTATTGGTTATTCTCTA 1053
                        ** ***   *  *   *  *        **  *  * *  ** *   *     *    *

consensus_13612#2      ATAGTATGCTATTGTTGCACAG-----TGCTGTAACGCATTTTGGTCACAATAATCCTAC 580
consensus_13612#3      ATAGTATGCTATTGTTGCATAA-----AAAAAAAA------------------------- 298
consensus_13612#1      ATAGTATGCTATTGTTGCACAG-----TGCTGTAACGCATTTTGGTCACAATAATCCTAC 1099
consensus_13612#0      GTACCAAACTGGCTCTGTATGCTTGCCAGTTGCCGTGTACTTAGGATATTTTAATCCTAC 1113
                        **  *  **     ** *                                         

consensus_13612#2      AAACCTTTTGCTATTACCTTGGGTAGTCCTATGGTAGGCGAATGTAGTTC-ATGTATGAC 639
consensus_13612#3      ------------------------------------------------------------
consensus_13612#1      AAACCTTTTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-AAAAAAAAA 1158
consensus_13612#0      GAGTCAAACTACTCTCTATATGCCTCCTTGTTTACAGGTCAATAAATTGAGAGATGCTAC 1173
                                                                                   

consensus_13612#2      CACTATGATGATGACCGATATTAGGAATAATGTTTGTTTGCTTGAAAAAAAAAAAAAAAA 699
consensus_13612#3      ------------------------------------------------------------
consensus_13612#1      AAAAAAAACCCCTGT--------------------------------------------- 1173
consensus_13612#0      CAAGTTGTTTTCAAGCAACATTTTGTCATATATTAAAGCTCTC----------------- 1216
                                                                                   

consensus_13612#2      AAAAAA 705
consensus_13612#3      ------
consensus_13612#1      ------
consensus_13612#0      ------