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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13656#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 2563 fasta sequence
[TGCTTGCTCTACCATATGAGTGCTGCAACTCATGATATTCTACCACTGAAATCCTCTCTCTTTGTTGAAGAGTATGAAACCAACATCCTGCAGTCATCTGATGGCACATTCTCATGTGGCTTCTACAACATCACTAACGCCTACAACATCACTAGCGCCTTCACCTTCTCAATTTGGTACTCCAATTCAGCTGACAAGGCCATCGTATGGAGCGCAAACCGTGGCCGTCCCGTGCACTCAAGGAGATCAGAGATCACTCTGCGCAAGGATGGAAACATAGTCCTCACTGACTATGACGGCACAGTCGTGTGGCAAACTGACGGTAAATTCCCTAATGTTCGATATGTTCAATTATTGAACACTGGTAACCTTGTCTTGAAGAACTCCAGTGGAAACATTGTTTGGCAAAGTTTCGATTCACCGACAGACACTTTGCTTCCTACTCAACGCATTCTCGCTACAACAAAGTTAGTCTCTACCACTGGGTTACAGGTTCCTAGTCACTATACCTTCCGTTTCAGCGATCAGTCGATATTGTCACTTATATATGATGACACTAATGTTTCCGGCGTATACTGGCCAGATCCTGATTACCAGTACTATGAGAATAATAGGAACCTTTATAACAGTACAAGGATAGGTAGTCTTGATGATTATGGAGAATTTTTTTCGAGTGATCTTGCTAAGCATCAAGCCCGTGTTGCCTCTGATAGAAGCTTGGGGATTAAAAGAAGGCTTACCTTGGATTATGATGGTAATCTTAGACTCTATAGCTTGAATAACTCAGATGGAACATGGACAATTTCATGGATTGCTCAACCTCAAACATGCATGACTCATGGTTTGTGTGGTCCATATGGAATCTGCCACTATTCACCTACACCAAGATGTTCATGCCCACCTGGTTATAAGATGAGGAATCCGGGTAACTGGACACAAGGTTGCAAGCCTATTGTCGAAATTGCATGCGATGGTAAACAGAATGTAACATTTTTGCAACTTCGAAACACTGATTTTTGGGGTTCTGATCAACAACGTATTGAAAAGGTACCTTGGGAGGTGTGTTGGAACACTTGCATAAGTGACTGCACATGCAAGGGATTTCAATACCAAGAAGGAAATGGTACATGCTATCCAAAATCTTTTCTCTTTAATGGAAGGACTTTCCCAACACCTTTTGTGCGAACGATGTATATCAAACTT-CCTTCAAGTTTGGATGTTTCAAAAAAACCCATTCCACAGTCTAGTATACATGATTATACACTAAGTGGACTTGACTGTGATCATTTAAACACAATAACCACAGAGGCAGTTCGTAACATGAATAAGATTGGTGGGGAGGAACCAAAATGGTTCTACTTCTATGGGTTTATCGGTGTGTTTTTCATTGTTGAGGTTTTCTTCTTCGCATTTGCATGGTTCTTTGTCTTGAGGAAGGAGATGCGGTCATCTCAAGTATGGATAGCTGAGGAAGGCTACAGGGTGATGACTAGTCATTTCCGAATGTATAGTCATAGAGAGCTGGTTAAGGCAACTGAAAGGTTTAAACATGAGCTTGGATGGGGAGGTTCAGGAGTTGTCTATAAGGGAATATTGGATGACGATCGAGCAGTGGTCATAAAAAAGTTGGAAAATGTCACGCAAAATAGGGAGGAGTTTCANGATGAGTTGCATGTTATTTCAAGAATCAACCATATGAACCTAGTAAGAATATATGGTTTTTGCTCAGAAAGATTCCATAGATTGCTGGTCTTAGAGTATGTTGAGAATGGATCATTGGCTAATGTACTGTTCAACAGTAAAATCTTGTTAGATTGGAAGCAAAGGTTTAATATTGCTTTAGGCGTTGCAAAGGGACTGGCTTATCTTCACCATGAGTGCCTAGAGTGGGTCATTCACTGCAACCTAAAGCCAGAGAACATTTTGCTGGATGAGAATTTAGAACCTAAGATCACTGACTTTGGGTTGGCAAAGCTGCTTAGTAGATCTGGCTCTAATCAAAATGTTTCACGAGCACGAGGGACCATAGGTTACATTGCTCCAGAATGGATATCTGGTTTACCAATAACAGCAAAGGTTGATGTATATAGTTATGGAGTCGTTCTTCTTGAGCTAGTGTCAGGAAGACGAGTCTTTGATTTAATCGTTGGAGAGGATAAGACGAAGGTGCATGAGATGCTCAAGAAGTTTATTAAGATGATTTGTTATAGATTGGACAATGAGAAATCATTGTGGTTAGCAGAGTTCGTAGATTTCAGAGTGGGTGATGAATTCAACTACTTGCAAGCAAAAACTTTGGTAAAGTTGGCTGTGTCCTGCTTGGAGGAAGATAGGAAGAAAAGGCCAACAATGGAATCAATAGTGGAGAGCCTCCTTTCAGTTGATTTAGCTAGAAGTTAATAAAATAATAATGTACCGAAGGGAGAATATTTATAATATTGGAGTCCCTTAGTGGTATGTTATTGCGAGGACCATACTAATTCTAGAAGTCTTCATTTCCTAGGATTACTGTAATGTGTATAACGTTCTATATAATTGTGTGTTTTACTTAAAAAAAAAAGGA]
[+] EMBL CB629406 [TGCTTGCTCTACCATATGAGTGCTGCAACTCATGATATTCTACCACTGAAATCCTCTCTCTTTGTTGAAGAGTATGAAACCAACATCCTGCAGTCATCTGATGGCACATTCTCATGTGGCTTCTACAACATCACTAACGCCTACAACATCACTAGCGCCTTCACCTTCTCAATTTGGTACTCCAATTCAGCTGACAAGGCCATCGTATGGAGCGCAAACCGTGGCCGTCCCGTGCACTCAAGGAGATCAGAGATCACTCTGCGCAAGGATGGAAACATAGTCCTCACTGACTATGACGGCACAGTCGTGTGGCAAACTGACGGTAAATTCCCTAATGTTCGATATGTTCAATTATTGAACACTGGTAACCTTGTCTTGAAGAACTCCAGTGGAAACATTGTTTGGCAAAGTTTCGATTCACCGACAGACACTTTGCTTCCTACTCAACGCATTCTCGCTACAACAAAGTTAGTCTCTACCACTGGGTTACAGGTTCCTAGTCACTATACCTTCCGTTTCAGCGATCAGTCGATATTGTCACTTATATATGATGACACTAATGTTTCCGGCGTATACTGGCCAGATCCTGATTACCAGTACTATGAGAATAATAGGAACCTTTATAACAGTACAAGGATAGGTAGTCTTGATGATTATGGAGAATTTTTTTCGAGTGATCTTGCTAAACATCAAGCCCGTGTTGCCTCTGATAGAAGCTTGAGGATTAAAAGAAGGCTTACCTTGGATTATGATGGTAATCTTAGACTCTATAGC ]
[+] EMBL CB635887 [ AGTGCTGCAACTCATGATATTCTACCACTGAAATCCTCTCTCTTTGTTGAAGAGTATGAAACCAACATCCTGCAGTCATCTGATGGCACATTCTCATGTGGCTTCTACAACATCACTAACGCCTACAACATCACTAGCGCCTTCACCTTCTCAATTTGGTACTCCAATTCAGCTGACAAGGCCATCGTATGGAGCGCAAACCGTGGCCGTCCCGTGCACTCAAGGAGATCAGAGATCACTCTGCGCAAGGATGGAAACATAGTCCTCACTGACTATGACGGCACAGTCGTGTGGCAAACTGACGGTAAATTCCCTAATGTTCGATATGTTCAATTATTGAACACTGGTAACCTTGTCTTGAAGAACTCCAGTGGAAACATTGTTTGGCAAAGTTTCGATTCACCGACAGACACTTTGCTTCCTACTCAACGCATTCTCGCTACAACAAAGTTAGTCTCTACCACTGGGTTACAGGTTCCTAGTCACTATACCTTCCGTTTCAGCGATCAGTCGATATTGTCACTTATATATGATGACACTAATGTTTCCGGCGTATACTGGCCAGATCCTGATTACCAGTACTATGAGAATAATAGGAACCTTTATAACAGTACAAGGATAGGTAGTCTTGATGATTATGGAGAATTTTTTTCGAGTGATCTTGCTAAGCATCAAGCCCGTGTTGCCTCTGATAGAAGCTTGGGGATTAAAAGAAGGCTTACCTTGGATTATGATGGTAATCTTAGACTCTATAGCTTGAATAACTCAGATGGAACATGGACAATTTCATGGATTGCTCAACCTCAAACAT ]
[+] EMBL CB631463 [ ttgaccTGCTGCAACTCATGATATTCTACCACTGAAATCCTCTCTCTTTGTTGAAGAGTATGAAACCAACATCCTGCAGTCATCTGATGGCACATTCTCATGTGGCTTCTACAACATCACTAACGCCTACAACATCACTAGCGCCTTCACCTTCTCAATTTGGTACTCCAATTCAGCTGACAAGGCCATCGTATGGAGCGCAAACCGTGGCCGTCCCGTGCACTCAAGGAGATCAGAGATCACTCTGCGCAAGGATGGAAACATAGTCCTCACTGACTATGACGGCACAGTCGTGTGGCAAACTGACGGTAAATTCCCTAATGTTCGATATGTTCAATTATTGAACACTGGTAACCTTGTCTTGAAGAACTCCAGTGGAAACATTGTTTGGCAAAGTTTCGATTCACCGACAGACACTTTGCTTCCTACTCAACGCATTCTCGCTACAACAAAGTTAGTCTCTACCACTGGGTTACAGGTTCCTAGTCACTATACCTTCCGTTTCAGCGATCAGTCGATATTGTCACTTATATATGATGACACTAATGTTTCCGGCGTATACTGGCCAGATCCTGATTACCAGTACTATGAGAATAATAGGAACCTTTATAACAGTACAAGGATAGGTAGTCTTGATGATTATGGAGAATTTTTTTCGAGTGATCTTGCTAAGCATCAAGCCCGTGTTGCCTCTGATAGAAGCTTGGGGATTAAAAGAAAGCTTACCTTGGATTATGATGGTAATCTTAGACTCTATAGCTTGAATAACTCAGATGGAACATGGACAATTTCATGGATTGCTCAAacc ]
[+] EMBL CB670158 [ TCAACGCCTTCTCGCTACAACAAAGTTAGTCTCTACCACTGGGTTACAGGTTCCTGGTCACTATTCCTTCCGTTTCAGCGATCAGTAGATATTGTCACTTATATATGATGACGCTAATGTTTCCGGTGTATACTGGCCAGATCCTGATTACCTGTACTATGAGAATAATAGGAACCTTTATAACAGTACAAGGATAGGTAGTCTTGATGATTATGGAGAATTTTTTTCGAGTGATCTTGCTAAGCATCAAGCCCGTGTTGCCTCTGATAGAAGTTTGGGGATTAAAAGGAGGCTTACCTTGGATTATGATGGTAATCTTAGACTCTATAGCTTGAATAACTCAGATGGAACATGGACAATTTCATGGATTGCTCAACCTCAAACATGCATGACTCATGGTTTGTGTGGTCCATATGGAATCTGCCACTATTCACCTACACCAAGATGTTCATGCCCACCTGGTTATAAGATGAGGAATCCGGGTAACTGGACACAAGGTTGCAAGCCTATTGTCGAAATTGCATGCGATGGTAAACAGAATGTAACATTTTTGCAACTTCGAAACACTGATTTTTGGGGTTCTGATCAACAACATATTGAAAAGGTACCCTGGGAGGTGTGTTGGAACACTTGCATAAGTGATTGCACATGTAAGGAATTTCAGTACCAAGAAGGAAATGGTACATGCTATCCAAAATCTTTTCTCTTTAATGGAAGGACTTTCCCGACACCTTTTGTGCGAACGATGTATATCAAACTTCCCTTC AGTTTGGATGTTTCTAAAAAACCCATTCCACAGTCTAGTAT ]
[+] EMBL CB647530 [ ACACAAGGTTGCAAGCCTATTGTCGAAATTGCATGCGATGGTAAACAGAATGTAACATTTTTGCAACTTCGAAACACTGATTTTTGGGGTTCTGATCAACAACGTATTGAAAAGGTACCTTGGGAGGTGTGTTGGAACACTTGCATAAGTGACTGCACATGCAAGGGATTTCAATACCAAGAAGGAAATGGTACATGCTATCCAAAATCTTTTCTCTTTAATGGAAGGACTTTCCCAACACCTTTTGTGCGAACGATGTATATCAAACTT CCTTCAAGTTTGGATGTTTCAAAAAAACCCATTCCACAGTCTAGTATACATGATTATACACTAAGTGGACTTGACTGTGATCATTTAAACACAATAACCACAGAGGCAGTTCGTAACATGAATAAGATTGGTGGGGAGGAACCAAAATGGTTCTACTTCTATGGGTTTATCGGTGTGTTTTTCATTGTTGAGGTTTTCTTCTTCGCATTTGCATGGTTCTTTGTCTTGAGGAAGGAGATGCGGTCATCTCAAGTATGGATAGCTGAGGAAGGCTACAGGGTGATGACTAGTCATTTCCGAATGTATAGTCATAGAGAGCTGGTTAAGGCAACTGAAAGGTTTAAACATGAGCTTGGATGGGGAGGTTCAGGAGTTGTCTATAAGGGAATATTGGATGACGATCGAGCAGTGGTCATAAAAAAGTTGGAAAATGTCACGCAAAATAGGGAGGAGTTTCANGATGAGTTGCATGTTATTTCAAGAATCAACCATATGAACCTAGTAAGAATATATGGTTTTTGCTCAGAAAGATTCCATAGATTGCTGGTCTTAGAGTATGTTGAGAATG ]
[+] EMBL CB650141 [ ACACAAGGTTGCAAGCCTATTGTCGAAATTGCATGCGATGGTAAACAGAATGTAACATTTTTGCAACTTCGAAACACTGATTTTTGGGGTTCTGATCAACAACGTATTGAAAAGGTACCTTGGGAGGTGTGTTGGAACACTTGCATAAGTGACTGCACATGCAAGGGATTTCAATACCAAGAAGGAAATGGTACATGCTATCCAAAATCTTTTCTCTTTAATGGAAGGACTTTCCCAACACCTTTTGTGCGAACGATGTATATCAAACTT CCTTCAAGTTTGGATGTTTCAAAAAAACCCATTCCACAGTCTAGTATACATGATTATACACTAAGTGGACTTGACTGTGATCATTTAAACACAATAACCACAGAGGCAGTTCGTAACATGAATAAGATTGGTGGGGAGGAACCAAAATGGTTCTACTTCTATGGGTTTATCGGTGTGTTTTTCATTGTTGAGGTTTTCTTCTTCGCATTTGCATGGTTCTTTGTCTTGAGGAAGGAGATGCGGTCATCTCAAGTATGGATAGCTGAGGAAGGCTACAGGGTGATGACTAGTCATTTCCGAATGTATAGTCATAGAGAGCTGGTTAAGGCAACTGAAAGGTTTAAACATGAGCTTGGATGGGGAGGTTCAGGAGTTGTCTATAAGGGAATATTGGATGACGATCGAGCAGTGGTCATAAAAAAGTTGGAAAATGTCACGCAAAATAGGGAGGAGTTTCAGGATGAGTTGCATGTTATTTCAAGAATCAACCATATGAACCTAGTAAGAATATATGGTTTTTGCTCAGAAAGATTCCATAGATTGCTGGTCTTAGAGTATGTTGAGA ]
[-] EMBL CB629407 [ TGGTTTTTGCTCAGAAAGATTCCATAGATTGCTGGTCTTAGAGTATGTTGAGAATGGATCATTGGCTAATGTACTGTTCAACAGTAAAATCTTGTTAGATTGGAAGCAAAGGTCTAATATCGCTTTAGGCGTTGCAAAGGGACTGGCTTATCTTCACCATGAGTGCCTAGAGTGGGTCATTCACTGCAACCTAAAGCCAGAGAACATTTTGCTGGATGAGAATTTAGAACCTAAGATCACTGACTTTGGGTTGGCAAAGCTGCTTAGTAGATCTGGCTCTAATCAAAATGTTTCACGAGCACGAGGGACCATAGGTTACATTGCTCCAGAATGGATATCTGGTTTACCAATAACAGCAAAGGTTGATGTATATAGTTATGGAGTCGTTCTTCTTGAGCTAGTGTCAGGAAGACGAGTCTTTGATTTAATCGTTGGAGAGGATAAGACGAAGGTGCATGAGATGCTCAAGAAGTTTATTAAGATGATTTGTTATAGATTGGACAATGAGAAATCATTGTGGTTAGCAGAGTTCGTAGATTTCAGAGTGGGTGATGAATTCAACTACTTGCAAGCAAAAACTTTGGTAAAGTTGGCTGTGTCCTGCTTGGAGGAAGATAGGAAGAAAAGGCCAACAATGGAATCAATAGTGGAGAGCCTCCTTTCAGTTGATCTAGCTAGAAGTTAATAAAATAATAATGTACCGAAGGGAGAATATTTATAATATTGGAGTCCCTTAGTGGTATGTTATTGCGAGGACCATACTAATTCTAGAAGTCTTCATTTCCTAGGATTACTGTAATGTGTATAACGTTCTATATAATTGTGTGTTTTACT ]
[-] EMBL CB635888 [ AGATTGCTGGTCTTAGAGTATGTTGAGAATGGATCATTGGCTAATGTACTGTTCAACAGTAAAATCTTGTTAGATTGGAAGCAAAGGTTTAATATTGCTTTAGGCGTTGCAAAGGGACTGGCTTATCTTCACCATGAGTGCCTAGAGTGGGTCATTCACTGCAACCTAAAGCCAGAGAACATTTTGCTGGATGAGAATTTAGAACCTAAGATCACTGACTTTGGGTTGGCAAAGCTGCTTAGTAGATCTGGCTCTAATCAAAATGTTTCACGAGCACGAGGGACCATAGGTTACATTGCTCCAGAATGGATATCTGGTTTACCAATAACAGCAAAGGTTGATGTATATAGTTATGGAGTCGTTCTTCTTGAGCTAGTGTCAGGAAGACGAGTCTTTGATTTAATCGTTGGAGAGGATAAGACGAAGGTGCATGAGATGCTCAAGAAGTTTATTAAGATGATTTGTTATAGATTGGACAATGAGAAATCATTGTGGTTAGCAGAGTTCGTAGATTTCAGAGTGGGTGATGAATTCAACTACTTGCAAGCAAAAACTTTGGTAAAGTTGGCTGTGTCCTGCTTGGAGGAAGATAGGAAGAAAAGGCCAACAATGGAATCAATAGTGGAGAGCCTCCTTTCAGTTGATTTAGCTAGAAGTTAATAAAATAATAATGTACCGAAGGGAGAATATTTATAATATTGGAGTCCCTTAGTGGTATGTTATTGCGAGGACCATACTAATTCTAGAAGTCTTCATTTCCTAGGATTACTGTAATGTGTATAACGTTCTATATAATTGTGTGTTTTACTTAAAAAAAAAAGGA]
[-] EMBL CB647531 [ GAGAATGGATCATTGGCTAATGTACTGTTCAACAGTAAAATCTTGTTAGATTGGAAGCAAAGGTTTAATATTGCTTTAGGCGTTGCAAAGGGACTGGCTTATCTTCACCATGAGTGCCTAGAGTGGGTCATTCACTGCAACCTAAAGCCAGAGAACATTTTGCTGGATGAGAATTTAGAACCTAAGATCACTGACTTTGGGTTGGCAAAGCTGCTTAGTAGATCTGGCTCTAATCAAAATGTTTCACGAGCACGAGGGACCATAGGTTACATTGCTCCAGAATGGATATCTGGTTTACCAATAACAGCAAAGGTTGATGTATATAGTTATGGAGTCGTTCTTCTTGAGCTAGTGTCAGGAAGACGAGTCTTTGATTTAATCGTTGGAGAGGATAAGACGAAGGTGCATGAGATGCTCAAGAAGTTTATTAAGATGATTTGTTATAGATTGGACAATGAGAAATCATTGTGGTTAGCAGAGTTCGTAGATTTCAGAGTGGGTGATGAATTCAACTACTTGCAAGCAAAAACTTTGGTAAAGTTGGCTGTGTCCTGCTTGGAGGAAGATAGGAAGAAAAGGCCAACAATGGAATCAATAGTGGAGAGCCTCCTTTCAGTTGATTTAGCTAGAAGTTAATAAAATAATAATGTACCGAAGGGAGAATATTTATAATATTGGAGTCCCTTGGTGGTATGTTATTGCGAGGACCATACTAATTCTAGAAGTCTTCATTTCCTAGGATTACTGTAATGTGTATAATGTTCTATATAATTGTGT ]
[-] EMBL CB650142 [ TTGGCTAATGTACTGTTCAACAGTAAAATCTTGTTAGATTGGAAGCAAAGGTTTAATATTGCTTTAGGCGTTGCAAAGGGACTGGCTTATCTTCACCATGAGTGCCTAGAGTGGGTCATTCACTGCAACCTAAAGCCAGAGAACATTTTGCTGGATGAGAATTTAGAACCTAAGATCACTGACTTTGGGTTGGCAAAGCTGCTTAGTAGATCTGGCTCTAATCAAAATGTTTCACGAGCACGAGGGACCATAGGTTACATTGCTCCAGAATGGATATCTGGTTTACCAATAACAGCAAAGGTTGATGTATATAGTTATGGAGTCGTTCTTCTTGAGCTAGTGTCAGGAAGACGAGTCTTTGATTTAATCGTTGGAGAGGATAAGACGAAGGTGCATGAGATGCTCAAGAAGTTTATTAAGATGATTTGTTATAGATTGGACAATGAGAAATCATTGTGGTTAGCAGAGTTCGTAGATTTCAGAGTGGGTGATGAATTCAACTACTTGCAAGCAAAAACTTTGGTAAAGTTGGCTGTGTCCTGCTTGGAGGAAGATAGGAAGAAAAGGCCAACAATGGAATCAATAGTGGAGAGCCTCCTTTCAGTTGATTTAGCTAGAAGTTAATAAAATAATAATGTACCGAAGGGAGAATATTTATAATATTGGAGTCCCTTGGTGGTATGTTATTGC ]
[-] EMBL CB631464 [ TCAACAGTAAAATCTTGTTAGATTGGAAGCAAAGGTTTAATATTGCTTTAGGCGTTGCAAAGGGACTGGCTTATCTTCACCATGAGTGCCTAGAGTGGGTCATTCACTGCAACCTAAAGCCAGAGAACATTTTGCTGGATGAGAATTTAGAACCTAAGATCACTGACTTTGGGTTGGCAAAGCTGCTTAGTAGATCTGGCTCTAATCAAAATGTTTCACGAGCACGAGGGACCATAGGTTACATTGCTCCAGAATGGATATCTGGTTTACCAATAACAGCAAAGGTTGATGTATATAGTTATGGAGTCGTTCTTCTTGAGCTAGTGTCAGGAAGACGAGTCTTTGATTTAATCGTTGGAGAGGATAAGACGAAGGTGCATGAGATGCTCAAGAAGTTTATTAAGATGATTTGTTATAGATTGGACAATGAGAAATCATTGTGGTTAGCAGAGTTCGTAGATTTCAGAGTGGGTGATGAATTCAACTACTTGCAAGCAAAAACTTTGGTAAAGTTGGCTGTGTCCTGCTTGGAGGAAGATAGGAAGAAAAGGCCAACAATGGAATCAATAGTGGAGAGCCTCCTTTCAGTTGATTTAGCTAGAAGTTAATAAAATAATAATGTACCGAAGGGAGAATATTTATAATATTGGAGTCCCTTAGTGGTATGTTATTGCGAGGACCATACTAATTCTAGAAGTCTTCATTTCCTAGGATTACTGTAAAAGGTATAACGTTCTATATAAT ]
consensusID : consensus_13656#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 826 fasta sequence
[AGAATGGATCATTGGCTAATGTACTGTTCAACAGTAAAATCTTGTTAGATTGGAAGCAAAGGTTTAATATTGCTTTAGGCGTTGCAAAGGGACTGGCTTATCTTCACCATGAGTGCCTAGAGTGGGTCATTCACTGCAACCTAAAGCCAGAGAACATTTTGCTGGATGAGAACTTAGAACCTAAGATCGCTGACTTTGGGTTGGCAAAGCTGCTTAGTAGATCTGGCTCTAAGCAGAATGTTTCACGAGCACGAGGGACCATAGGTTACATTGCTCCAGAATGGATATCTGGTTTACCAATAACAGCAAAGGTTGATGTATATAGTTATGGAGTCGTTCTTCTTGAGCTAGTGTCAGGAAAACGAGTCTTTGATCTGATCATAGGAGAGGATAAGACGAAGGTGCATGAGATGCTCAAGAAGTTTATTAAGATGATTTGTTATAGATTGGACAATGAGAAATCATTGTGGTTAGCAGAGTTCGTAGATTTCAGAGTGGGTGATGAATTCAACTACTTGCAAGCAAAAACTTTGGTAAAGTTGGCTGTGTCCTGCTTGGAAGAAGATAGGAAGAAAAGGCCAACAATGGAATCAATAGTCGAGAGCCTCCTTTCAGTTGATTTAGCTAGAAGTTAATAAAATAATAATGTACCAAGGGAGAATATTTATAATATGGAGTCCCTTAGTGGTATGTTATTGCTAGGACTATACTAATTCTAGAAGTCTTCATTTCCTAGGATCACCGTAATGTATATAAAGTTCTATATAATTGTGTGTCTTACTTATATCTTGTAAATTTTTCATGTTATTTAGTAATGGTCTAATGG]
[-] EMBL CB670159 [AGAATGGATCATTGGCTAATGTACTGTTCAACAGTAAAATCTTGTTAGATTGGAAGCAAAGGTTTAATATTGCTTTAGGCGTTGCAAAGGGACTGGCTTATCTTCACCATGAGTGCCTAGAGTGGGTCATTCACTGCAACCTAAAGCCAGAGAACATTTTGCTGGATGAGAACTTAGAACCTAAGATCGCTGACTTTGGGTTGGCAAAGCTGCTTAGTAGATCTGGCTCTAAGCAGAATGTTTCACGAGCACGAGGGACCATAGGTTACATTGCTCCAGAATGGATATCTGGTTTACCAATAACAGCAAAGGTTGATGTATATAGTTATGGAGTCGTTCTTCTTGAGCTAGTGTCAGGAAAACGAGTCTTTGATCTGATCATAGGAGAGGATAAGACGAAGGTGCATGAGATGCTCAAGAAGTTTATTAAGATGATTTGTTATAGATTGGACAATGAGAAATCATTGTGGTTAGCAGAGTTCGTAGATTTCAGAGTGGGTGATGAATTCAACTACTTGCAAGCAAAAACTTTGGTAAAGTTGGCTGTGTCCTGCTTGGAAGAAGATAGGAAGAAAAGGCCAACAATGGAATCAATAGTCGAGAGCCTCCTTTCAGTTGATTTAGCTAGAAGTTAATAAAATAATAATGTACCAAGGGAGAATATTTATAATATGGAGTCCCTTAGTGGTATGTTATTGCTAGGACTATACTAATTCTAGAAGTCTTCATTTCCTAGGATCACCGTAATGTATATAAAGTTCTATATAATTGTGTGTCTTACTTATATCTTGTAAATTTTTCATGTTATTTAGTAATGGTCTAATGG]
consensusID : consensus_13656#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence
[AAGTGTTAATTAAAGATGAATTTGTTAATAAGGATTGGACAATGAGAAATCATTGTGGTTACCAGAGTTCGTAGATTTCAGAGTGGGTGATGAATTCAACTACTTGCAACAAGAACTTTGGTAAAGTTGGCTGTGTCCTGCGTTGGAGGAAGATAGGAAGAAAAGGCCCACAATGGAATCATAGTGGAGAGCCTCCTTTCAGTTGATTTAGCTAGAAGTTAAGTAAAATAATGAATGTGACCGAAGGGAGAATATTTATAATATTGGAGTCCCTTAGTGGTATGTTATTGCGAGGACCATACTAATTCTACGAAGTCTTCATTTCCTAGGATTACTGTAATGTGTATAACGTTCTATATAATTGTGTGTTTTACTTATATCTCGTAATGTTTTCCATGTTATTTAGTAATGGTCTAATGGAACGGTGGTGGTATATTTTTCTAGTTTTTTTATATTGGCAAAAGTAATGCCAAAAAAAAAA]
[+] EMBL BI812638 [AAGTGTTAATTAAAGATGAATTTGTTAATAAGGATTGGACAATGAGAAATCATTGTGGTTACCAGAGTTCGTAGATTTCAGAGTGGGTGATGAATTCAACTACTTGCAACAAGAACTTTGGTAAAGTTGGCTGTGTCCTGCGTTGGAGGAAGATAGGAAGAAAAGGCCCACAATGGAATCATAGTGGAGAGCCTCCTTTCAGTTGATTTAGCTAGAAGTTAAGTAAAATAATGAATGTGACCGAAGGGAGAATATTTATAATATTGGAGTCCCTTAGTGGTATGTTATTGCGAGGACCATACTAATTCTACGAAGTCTTCATTTCCTAGGATTACTGTAATGTGTATAACGTTCTATATAATTGTGTGTTTTACTTATATCTCGTAATGTTTTCCATGTTATTTAGTAATGGTCTAATGGAACGGTGGTGGTATATTTTTCTAGTTTTTTTATATTGGCAAAAGTAATGCCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13656#0 TGCTTGCTCTACCATATGAGTGCTGCAACTCATGATATTCTACCACTGAAATCCTCTCTC 60
consensus_13656#1 ------------------------------------------------------------
consensus_13656#2 ------------------------------------------------------------
consensus_13656#0 TTTGTTGAAGAGTATGAAACCAACATCCTGCAGTCATCTGATGGCACATTCTCATGTGGC 120
consensus_13656#1 ------------------------------------------------------------
consensus_13656#2 ------------------------------------------------------------
consensus_13656#0 TTCTACAACATCACTAACGCCTACAACATCACTAGCGCCTTCACCTTCTCAATTTGGTAC 180
consensus_13656#1 ------------------------------------------------------------
consensus_13656#2 ------------------------------------------------------------
consensus_13656#0 TCCAATTCAGCTGACAAGGCCATCGTATGGAGCGCAAACCGTGGCCGTCCCGTGCACTCA 240
consensus_13656#1 ------------------------------------------------------------
consensus_13656#2 ------------------------------------------------------------
consensus_13656#0 AGGAGATCAGAGATCACTCTGCGCAAGGATGGAAACATAGTCCTCACTGACTATGACGGC 300
consensus_13656#1 ------------------------------------------------------------
consensus_13656#2 ------------------------------------------------------------
consensus_13656#0 ACAGTCGTGTGGCAAACTGACGGTAAATTCCCTAATGTTCGATATGTTCAATTATTGAAC 360
consensus_13656#1 ------------------------------------------------------------
consensus_13656#2 ------------------------------------------------------------
consensus_13656#0 ACTGGTAACCTTGTCTTGAAGAACTCCAGTGGAAACATTGTTTGGCAAAGTTTCGATTCA 420
consensus_13656#1 ------------------------------------------------------------
consensus_13656#2 ------------------------------------------------------------
consensus_13656#0 CCGACAGACACTTTGCTTCCTACTCAACGCATTCTCGCTACAACAAAGTTAGTCTCTACC 480
consensus_13656#1 ------------------------------------------------------------
consensus_13656#2 ------------------------------------------------------------
consensus_13656#0 ACTGGGTTACAGGTTCCTAGTCACTATACCTTCCGTTTCAGCGATCAGTCGATATTGTCA 540
consensus_13656#1 ------------------------------------------------------------
consensus_13656#2 ------------------------------------------------------------
consensus_13656#0 CTTATATATGATGACACTAATGTTTCCGGCGTATACTGGCCAGATCCTGATTACCAGTAC 600
consensus_13656#1 ------------------------------------------------------------
consensus_13656#2 ------------------------------------------------------------
consensus_13656#0 TATGAGAATAATAGGAACCTTTATAACAGTACAAGGATAGGTAGTCTTGATGATTATGGA 660
consensus_13656#1 ------------------------------------------------------------
consensus_13656#2 ------------------------------------------------------------
consensus_13656#0 GAATTTTTTTCGAGTGATCTTGCTAAGCATCAAGCCCGTGTTGCCTCTGATAGAAGCTTG 720
consensus_13656#1 ------------------------------------------------------------
consensus_13656#2 ------------------------------------------------------------
consensus_13656#0 GGGATTAAAAGAAGGCTTACCTTGGATTATGATGGTAATCTTAGACTCTATAGCTTGAAT 780
consensus_13656#1 ------------------------------------------------------------
consensus_13656#2 ------------------------------------------------------------
consensus_13656#0 AACTCAGATGGAACATGGACAATTTCATGGATTGCTCAACCTCAAACATGCATGACTCAT 840
consensus_13656#1 ------------------------------------------------------------
consensus_13656#2 ------------------------------------------------------------
consensus_13656#0 GGTTTGTGTGGTCCATATGGAATCTGCCACTATTCACCTACACCAAGATGTTCATGCCCA 900
consensus_13656#1 ------------------------------------------------------------
consensus_13656#2 ------------------------------------------------------------
consensus_13656#0 CCTGGTTATAAGATGAGGAATCCGGGTAACTGGACACAAGGTTGCAAGCCTATTGTCGAA 960
consensus_13656#1 ------------------------------------------------------------
consensus_13656#2 ------------------------------------------------------------
consensus_13656#0 ATTGCATGCGATGGTAAACAGAATGTAACATTTTTGCAACTTCGAAACACTGATTTTTGG 1020
consensus_13656#1 ------------------------------------------------------------
consensus_13656#2 ------------------------------------------------------------
consensus_13656#0 GGTTCTGATCAACAACGTATTGAAAAGGTACCTTGGGAGGTGTGTTGGAACACTTGCATA 1080
consensus_13656#1 ------------------------------------------------------------
consensus_13656#2 ------------------------------------------------------------
consensus_13656#0 AGTGACTGCACATGCAAGGGATTTCAATACCAAGAAGGAAATGGTACATGCTATCCAAAA 1140
consensus_13656#1 ------------------------------------------------------------
consensus_13656#2 ------------------------------------------------------------
consensus_13656#0 TCTTTTCTCTTTAATGGAAGGACTTTCCCAACACCTTTTGTGCGAACGATGTATATCAAA 1200
consensus_13656#1 ------------------------------------------------------------
consensus_13656#2 ------------------------------------------------------------
consensus_13656#0 CTTCCTTCAAGTTTGGATGTTTCAAAAAAACCCATTCCACAGTCTAGTATACATGATTAT 1260
consensus_13656#1 ------------------------------------------------------------
consensus_13656#2 ------------------------------------------------------------
consensus_13656#0 ACACTAAGTGGACTTGACTGTGATCATTTAAACACAATAACCACAGAGGCAGTTCGTAAC 1320
consensus_13656#1 ------------------------------------------------------------
consensus_13656#2 ------------------------------------------------------------
consensus_13656#0 ATGAATAAGATTGGTGGGGAGGAACCAAAATGGTTCTACTTCTATGGGTTTATCGGTGTG 1380
consensus_13656#1 ------------------------------------------------------------
consensus_13656#2 ------------------------------------------------------------
consensus_13656#0 TTTTTCATTGTTGAGGTTTTCTTCTTCGCATTTGCATGGTTCTTTGTCTTGAGGAAGGAG 1440
consensus_13656#1 ------------------------------------------------------------
consensus_13656#2 ------------------------------------------------------------
consensus_13656#0 ATGCGGTCATCTCAAGTATGGATAGCTGAGGAAGGCTACAGGGTGATGACTAGTCATTTC 1500
consensus_13656#1 ------------------------------------------------------------
consensus_13656#2 ------------------------------------------------------------
consensus_13656#0 CGAATGTATAGTCATAGAGAGCTGGTTAAGGCAACTGAAAGGTTTAAACATGAGCTTGGA 1560
consensus_13656#1 ------------------------------------------------------------
consensus_13656#2 ------------------------------------------------------------
consensus_13656#0 TGGGGAGGTTCAGGAGTTGTCTATAAGGGAATATTGGATGACGATCGAGCAGTGGTCATA 1620
consensus_13656#1 ------------------------------------------------------------
consensus_13656#2 ------------------------------------------------------------
consensus_13656#0 AAAAAGTTGGAAAATGTCACGCAAAATAGGGAGGAGTTTCANGATGAGTTGCATGTTATT 1680
consensus_13656#1 ------------------------------------------------------------
consensus_13656#2 ------------------------------------------------------------
consensus_13656#0 TCAAGAATCAACCATATGAACCTAGTAAGAATATATGGTTTTTGCTCAGAAAGATTCCAT 1740
consensus_13656#1 ------------------------------------------------------------
consensus_13656#2 ------------------------------------------------------------
consensus_13656#0 AGATTGCTGGTCTTAGAGTATGTTGAGAATGGATCATTGGCTAATGTACTGTTCAACAGT 1800
consensus_13656#1 -------------------------AGAATGGATCATTGGCTAATGTACTGTTCAACAGT 35
consensus_13656#2 ------------------------------------------------------------
consensus_13656#0 AAAATCTTGTTAGATTGGAAGCAAAGGTTTAATATTGCTTTAGGCGTTGCAAAGGGACTG 1860
consensus_13656#1 AAAATCTTGTTAGATTGGAAGCAAAGGTTTAATATTGCTTTAGGCGTTGCAAAGGGACTG 95
consensus_13656#2 ------------------------------------------------------------
consensus_13656#0 GCTTATCTTCACCATGAGTGCCTAGAGTGGGTCATTCACTGCAACCTAAAGCCAGAGAAC 1920
consensus_13656#1 GCTTATCTTCACCATGAGTGCCTAGAGTGGGTCATTCACTGCAACCTAAAGCCAGAGAAC 155
consensus_13656#2 ------------------------------------------------------------
consensus_13656#0 ATTTTGCTGGATGAGAATTTAGAACCTAAGATCACTGACTTTGGGTTGGCAAAGCTGCTT 1980
consensus_13656#1 ATTTTGCTGGATGAGAACTTAGAACCTAAGATCGCTGACTTTGGGTTGGCAAAGCTGCTT 215
consensus_13656#2 ------------------------------------------------------------
consensus_13656#0 AGTAGATCTGGCTCTAATCAAAATGTTTCACGAGCACGAGGGACCATAGGTTACATTGCT 2040
consensus_13656#1 AGTAGATCTGGCTCTAAGCAGAATGTTTCACGAGCACGAGGGACCATAGGTTACATTGCT 275
consensus_13656#2 ------------------------------------------------------------
consensus_13656#0 CCAGAATGGATATCTGGTTTACCAATAACAGCAAAGGTTGATGTATATAGTTATGGAGTC 2100
consensus_13656#1 CCAGAATGGATATCTGGTTTACCAATAACAGCAAAGGTTGATGTATATAGTTATGGAGTC 335
consensus_13656#2 ------------------------------------------------------------
consensus_13656#0 GTTCTTCTTGAGCTAGTGTCAGGAAGACGAGTCTTTGATTTAATCGTTGGAGAGGATAAG 2160
consensus_13656#1 GTTCTTCTTGAGCTAGTGTCAGGAAAACGAGTCTTTGATCTGATCATAGGAGAGGATAAG 395
consensus_13656#2 ------------------------------------------------------------
consensus_13656#0 ACGAAGGTGCATGAGATGCTCAAGAAGTTTATTAA-GATGA-TTTGTTAT---AGATTGG 2215
consensus_13656#1 ACGAAGGTGCATGAGATGCTCAAGAAGTTTATTAA-GATGA-TTTGTTAT---AGATTGG 450
consensus_13656#2 ----------------------AAGTGTTAATTAAAGATGAATTTGTTAATAAGGATTGG 38
* *** ***** ***** ******* ******
consensus_13656#0 ACAATGAGAAATCATTGTGGTTAGCAGAGTTCGTAGATTTCAGAGTGGGTGATGAATTCA 2275
consensus_13656#1 ACAATGAGAAATCATTGTGGTTAGCAGAGTTCGTAGATTTCAGAGTGGGTGATGAATTCA 510
consensus_13656#2 ACAATGAGAAATCATTGTGGTTACCAGAGTTCGTAGATTTCAGAGTGGGTGATGAATTCA 98
*********************** ************************************
consensus_13656#0 ACTACTTGCAAGCAAAAACTTTGGTAAAGTTGGCTGTGTCCTGC-TTGGAGGAAGATAGG 2334
consensus_13656#1 ACTACTTGCAAGCAAAAACTTTGGTAAAGTTGGCTGTGTCCTGC-TTGGAAGAAGATAGG 569
consensus_13656#2 ACTACTTGCAA-CAAGAACTTTGGTAAAGTTGGCTGTGTCCTGCGTTGGAGGAAGATAGG 157
*********** *** **************************** ***** *********
consensus_13656#0 AAGAAAAGGCCAACAATGGAATCAATAGTGGAGAGCCTCCTTTCAGTTGATTTAGCTAGA 2394
consensus_13656#1 AAGAAAAGGCCAACAATGGAATCAATAGTCGAGAGCCTCCTTTCAGTTGATTTAGCTAGA 629
consensus_13656#2 AAGAAAAGGCCCACAATGGAATCA-TAGTGGAGAGCCTCCTTTCAGTTGATTTAGCTAGA 216
*********** ************ **** ******************************
consensus_13656#0 AGTTAA-TAAAATAAT-AATGT-ACCGAAGGGAGAATATTTATAATATTGGAGTCCCTTA 2451
consensus_13656#1 AGTTAA-TAAAATAAT-AATGT-ACC-AAGGGAGAATATTTATAATAT-GGAGTCCCTTA 684
consensus_13656#2 AGTTAAGTAAAATAATGAATGTGACCGAAGGGAGAATATTTATAATATTGGAGTCCCTTA 276
****** ********* ***** *** ********************* ***********
consensus_13656#0 GTGGTATGTTATTGCGAGGACCATACTAATTCTA-GAAGTCTTCATTTCCTAGGATTACT 2510
consensus_13656#1 GTGGTATGTTATTGCTAGGACTATACTAATTCTA-GAAGTCTTCATTTCCTAGGATCACC 743
consensus_13656#2 GTGGTATGTTATTGCGAGGACCATACTAATTCTACGAAGTCTTCATTTCCTAGGATTACT 336
*************** ***** ************ ********************* **
consensus_13656#0 GTAATGTGTATAACGTTCTATATAATTGTGTGTTTTACTTAAAAAAAAAAG-GA------ 2563
consensus_13656#1 GTAATGTATATAAAGTTCTATATAATTGTGTGTCTTACTTATATCTTGTAA-ATTTTTCA 802
consensus_13656#2 GTAATGTGTATAACGTTCTATATAATTGTGTGTTTTACTTATATCTCGTAATGTTTTCCA 396
******* ***** ******************* ******* * *
consensus_13656#0 ------------------------------------------------------------
consensus_13656#1 TGTTATTTAGTAATGGTCTAATGG------------------------------------ 826
consensus_13656#2 TGTTATTTAGTAATGGTCTAATGGAACGGTGGTGGTATATTTTTCTAGTTTTTTTATATT 456
consensus_13656#0 -------------------------
consensus_13656#1 -------------------------
consensus_13656#2 GGCAAAAGTAATGCCAAAAAAAAAA 481
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||