Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 13676 cluster # 13676       Sequences # 13       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13676#0 length = 2474 sequences # 8  
 consensus_13676#1 length = 621 sequences # 4  
consensus_13676#2 length = 412 sequences # 1  
consensusID : consensus_13676#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 2474
fasta sequence 
                              [ACCTCTCCGACTGCACCTCCCTGGAGGACACCTCCCTCGCCGCCGCGCTCTCCGGCGCGGATCTCGCCGGGGTGCGCCGGGTCTGCCTCGCCCGCGCCAGCGGCGTCGGGTGGCGCGGCCTCTACGCGCTCGTGGCGGCGTGCCCGAGGCTGGAGGCCGTCGACCTGTCGCACTGCGTCGGCGCCGGCGACCGCGAGGCCGCCGCGCTGGCCGCGGCGACGGGGCTGAGGGAATTGAGCCTCGAGAAGTGCCTCGGCGTCACGGACATGGGGCTCGCCAAGGTGGTGGTCGGGTGCCCGAGGCTGGAGAAGCTGAGCCTCAAGTGGTGCCGCGAGATCTCCGACATCGGCATCGATTTGCTCTCCAAGAAGTGCCACGAGCTCCGGAGCCTCGACATCTCCTACCTCAAGGTTGGAAATGAATCCCTTAGATCAATATCCTCACTTGAGAAACTTGAGGAGTTGGCAATGGTTTGTTGCTCATGCATAGATGATGATGGCCTGGAATTACTAGGCAAGGGGAGCAACTCACTGCAGAGCGTTGATGTTTCAAGATGTGATCATGTAACCTCCCAGGGATTAGCTTCACTCATAGATGGTCACAATTTTCTCCAGAAGTTAAATGCTGCTGATAGTTTGCATGAGATGAGACAGTCGTTTCTGTCCAACTTGGCAAAACTGAAGGATACCTTGACAGTGCTTAGACTTGATGGTCTTGAAGTCTCATCCTCTGTTCTTCTGGCCATTGGTGGTTGTAATAACTTGGTCGAGATTGGCCTTAGCAAATGCAATGGCGTTACAGATGAAGGAATCTCTTCACTTGTAACTCAATGCAGCCACTTAAGGGTTATTGATCTCACATGCTGTAACCTCCTTACCAACAATGCCCTTGATTCAATAGCTGAGAACTGTAAGATGGTTGAACATCTCCGTTTGGAATCCTGTTCTTCCATAAGCGAAAAGGGACTGGAGCAGATTGCAACCTCCTGCCCCAATCTAAAGGAGATAGACCTCACTGACTGTGGAGTGAATGATGCAGCATTGCAGCACTTGGCCAAGTGCTCTGAACTGCTTGTACTGAAATTAGGCCTGTGCTCAAGTATTTCTGACAAAGGTCTTGCTTTTATCAGTTCAAGCTGTGGAAAGCTGATTGAGCTTGATCTCTATCGCTGCAATTCTATTACCGATGATGGGCTGGCAGCTTTAGCTAATGGCTGCAAGAAGATTAAGATGCTAAACCTATGCTACTGCAACAAGATTACCGACAGTGGTTTGGGCCACCTAGGCTCTCTAGAGGAGCTCACAAACCTTGAACTGAGGTGCTTGGTCCGTATAACAGGTATTGGAATCTCATCAGTTGCCATCGGCTGCAAGAACCTGATAGAGATAGACTTGAAGCGTTGCTATTCTGTCGATGATGCTGGCTTGTGGGCTCTTGCCCGATATGCACTAAACCTTAGACAGCTTACTATATCATACTGCCAAGTCACTGGCCTGGGCCTGTGTCACCTGTTAAGCTCCCTGAGGTGCCTCCAGGATGTTAAGATGGTACACCTCTCATGGGTCTCTATAGAAGGGTTCGAGATGGCACTGAGAGCGGCTTGCGGGAGGCTGAAGAAACTGAAGATGCTGAGTGGGCTGAAGTCTGTGCTGTCTCCTGAGCTGCTCCAGATGCTGCAGGCCTGCGGCTGCCGCATCCGTTGGGTCAACAAGCCTCTTGTCTACAAGGACTAAACCTGCTCTCATATCATCATCTGTGCAGTGTTAATATCCTCGGATCATACACCATGGAGCCCTTACCAAGTCTAGCATGCTTACAAGCCATGTTAGATACCCGCAATAATCGTCAATTTTCATACCCAAGATGTACTGACGATGGTGTCTCTGCATTGCTGCAGTGCCATCCTTATGTTTGGCAACTCCTAGACCAATGTTGTCATCTTCAGATTAAAATCCAACATTTGCAAACATGAGGCATCGAAACAGTTATGTTCTGAGCAAGTGATCCTTGTACCAGACTGCAATGAAATGCTCTACACTTTCAATTGGTATATGCAAAGAACAATGGCATGTTTGCCTTTGTCATTGCTCCAACTCCAGGCTTGCTGACCGATGCATCTTTTAGAGTTTAAGAACAGCTTTAGATCGCAGAAAAACTCTTCCTTGATGCTCCAGGATCTGGGCTGGGACACTGGTTTCATGGTTGTCTGTATTGTATGACTGGTGGACCCGTCCTTTT--TTTTTTACCTTGATTACAATAATCTCGATGTACTCATTCAGGCAGAGATTTGAAGTAATGTATTGAATCAGTTTTTATGACCGAGACAACCCACTAATATATCCCCTCTCTGGAGGGGGAGACCGGAACCCATTCTCCCTAAACTGCGCCCATAACGCCTGCCCTTGGGGGTACCCCACAAGCCGTGGGTGCGAAAACCTCCCTTCACCTAGTAAACCGCCCTGTTTGAATGTTCC]

[+] EMBL CB641665             [ACCTCTCCGACTGCACCTCCCTGGAGGACACCTCCCTCGCCGCCGCGCTCTCCGGCGCGGATCTCGCCGGGGTGCGCCGGGTCTGCCTCGCCCGCGCCAGCGGCGTCGGGTGGCGCGGCCTCTACGCGCTCGTGGCGGCGTGCCCGAGGCTGGAGGCCGTCGACCTGTCGCACTGCGTCGGCGCCGGCGACCGCGAGGCCGCCGCGCTGGCCGCGGCGACGGGGCTGAGGGAATTGAGCCTCGAGAAGTGCCTCGGCGTCACGGACATGGGGCTCGCCAAGGTGGTGGTCGGGTGCCCGAGGCTGGAGAAGCTGAGCCTCAAGTGGTGCCGCGAGATCTCCGACATCGGCATCGATTTGCTCTCCAAGAAGTGCCACGAGCTCCGGAGCCTCGACATCTCCTACCTCAAGGTTGGAAATGAATCCCTTAGATCAATATCCTCACTTGAGAAACTTGAGGAGTTGGCAATGGTTTGTTGCTCATGCATAGATGATGATGGCCTGGAATTACTAGGCAAGGGGAGCAACTCACTGCAGAGCGTTGATGTTTCAAGATGTGATCATGTAACCTCCCAGGGATTAGCTTCACTCATAGATGGTCACAATTTTCTCCAGAAGTTAAATGCTGCTGATAGTTTGCATGAGATGAGACAGTCGTTTCTGTCCAACTTGGCAAAACTGAAGGATACCTTGACAGTGCTTAGACTTGATGGTCTTGAAGTCTCATCCTCTGTTCTTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CA755039             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GGGGAGCAACTCACTGCAGAGTGTTGATGTTTCAAGATGTGATCATGTGACCTCCCAGGGATTAGCTTCACTCATAGATGGTCACAATTTTCTCCAGAAGTTAAATGCTGCTGATAGTTTGCATGAGATGAGACAATCGTTTCTGTCCAACTTGGCAAAACTGAAGGATACCTTGACAGTGCTTAGACTTGATGGTCTTGAAGTCGCATCCTCTGTTCTTCTGGCCATTGGTGGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AK060492             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          aaaaaaattCAGAAGTTAAATGCTGCTGATAGTTTGCATGAGATGAGACAGTCGTTTCTGTCCAACTTGGCAAAACTGAAGGATACCTTGACAGTGCTTAGACTTGATGGTCTTGAAGTCTCATCCTCTGTTCTTCTGGCCATTGGTGGTTGTAATAACTTGGTCGAGATTGGCCTTAGCAAATGCAATGGCGTTACAGATGAAGGAATCTCTTCACTTGTAACTCAATGCAGCCACTTAAGGGTTATTGATCTCACATGCTGTAACCTCCTTACCAACAATGCCCTTGATTCAATAGCTGAGAACTGTAAGATGGTTGAACATCTCCGTTTGGAATCCTGTTCTTCCATAAGCGAAAAGGGACTGGAGCAGATTGCAACCTCCTGCCCCAATCTAAAGGAGATAGACCTCACTGACTGTGGAGTGAATGATGCAGCATTGCAGCACTTGGCCAAGTGCTCTGAACTGCTTGTACTGAAATTAGGCCTGTGCTCAAGTATTTCTGACAAAGGTCTTGCTTTTATCAGTTCAAGCTGTGGAAAGCTGATTGAGCTTGATCTCTATCGCTGCAATTCTATTACCGATGATGGGCTGGCAGCTTTAGCTAATGGCTGCAAGAAGATTAAGATGCTAAACCTATGCTACTGCAACAAGATTACCGACAGTGGTTTGGGCCACCTAGGCTCTCTAGAGGAGCTCACAAACCTTGAACTGAGGTGCTTGGTCCGTATAACAGGTATTGGAATCTCATCAGTTGCCATCGGCTGCAAGAACCTGATAGAGATAGACTTGAAGCGTTGCTATTCTGTCGATGATGCTGGCTTGTGGGCTCTTGCCCGATATGCACTAAACCTTAGACAGCTTACTATATCATACTGCCAAGTCACTGGCCTGGGCCTGTGTCACCTGTTAAGCTCCCTGAGGTGCCTCCAGGATGTTAAGATGGTACACCTCTCATGGGTCTCTATAGAAGGGTTCGAGATGGCACTGAGAGCGGCTTGCGGGAGGCTGAAGAAACTGAAGATGCTGAGTGGGCTGAAGTCTGTGCTGTCTCCTGAGCTGCTCCAGATGCTGCAGGCCTGCGGCTGCCGCATCCGTTGGGTCAACAAGCCTCTTGTCTACAAGGACTAAACCTGCTCTCATATCATCATCTGTGCAGTGTTAATATCCTCGGATCATACACCATGGAGCCCTTACCAAGTCTAGCATGCTTACAAGCCATGTTAGATACCCGCAATAATCGTCAATTTTCATACCCAAGATGTACTGACGATGGTGTCTCTGCATTGCTGCAGTGCCATCCTTATGTTTGGCAACTCCTAGACCAATGTTGTCATCTTCAGATTAAAATCCAACATTTGCAAACATGAGGCATCGAAACAGTTATGTTCTGAGCAAGTGATCCTTGTACCAGACTGCAATGAAATGCTCTACACTTTCAATTGGTATATGCAAAGAACAATGGCATGTTTGCCTTTGTCATTGCTCCAACTCCAGGCTTGCTGACCGATGCATCTTTTAGAGTTTAAGAACAGCTTTAGATCGCAGAAAAACTCTTCCTTGATGCTCCAGGATCTGGGCTGGGACACTGGTTTCATGGTTGTCTGTATTGTATGACTGGTGGACCCGTCCTTTT  TTTTTTACCTTGATTACAATAATCTCGATGTACTCATTCAGGCAGAGATTTGAAGTAATGTATTGAAT                                                                                                                                                                        ]
[+] EMBL CB658105             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ACACTTCCGATTGGAATCCTGTTCTTCCATAAGCGAAAAGGGACTGGAGCAGATTGCAACCTCCTGCCCCAATCTAAAGGAGATAGACCTCACTGACTGTGGAGTGAATGATGCAGCATTGCAGCACTTGGCCAAGTGCTCTGAACTGCTTGTACTGAAATTAGGCCTGTGCTCAAGTATTTCTGACAAAGGTCTTGCTTTTATCAGTTCAAGCTGTGGAAAGCTGATTGAGCTTGATCTCTATCGCTGCAATTCTATTACCGATGATGGGCTGGCAGCTTTAGCTAATGGCTGCAAGAAGATTAAGATGCTAAACCTATGCTACTGCAACAAGATTACCGACAGTGGTTTGGGCCACCTAGGCTCTCTAGAGGAGCTCACAAACCTTGAACTGAGGTGCTTGGTCCGTATAACAGGTATTGGAATCTCATCAGTTGCCATCGGCTGCAAGAACCTGATAGAGATAGACTTGAAGCGTTGCTATTCTGTCGATGATGCTGGCTTGTGGGCTCTTGCCCGATATGCACTAAACCTTAGACAGCTTACTATATCATACTGCCAAGTCACTGGCCTGGGCCTGTGTCACCTGTTAAGCTCCCTGAGGTGCCTCCAGGATGTTAAGATGGTACACCTCTCATGGGTCTCTATAGAAGGGTTCGAGATGGCACTGAGAGCGGCTTGCGGGAGGCTGAAGAAACTGAAGATGCTGAGTGGGCTGAAGTCTGTGCTGTCTCCTGAGCTGCTCCAGATGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CF323118             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TAAAGGAGATAGACCTCACTGACTGTGGAGTGAATGATGCAGCATTGCAGCACTTGGCCAAGTGCTCTGAACTGCTTGTACTGAAATTAGGCCTGTGCTCAAGTATTTCTGACAAAGGTCTTGCTTTTATCAGTTCAAGCTGTGGAAAGCTGATTGAGCTTGATCTCTATCGCTGCAATTCTATTACCGATGATGGGCTGGCAGCTTTAGCTAATGGCTGCAAGAAGATTAAGATGCTAAACCTATGCTACTGCAACAAGATTACCGACAGTGGTTTGGGCCACCTAGGCTCTCTAGAGGAGCTCACAAACCTTGAACTGAGGTGCTTGGTCCGTATAACAGGTATTGGAATCTCATCAGTTGCCATCGGCTGCAAGAACCTGATAGAGATAGACTTGAAGCGTTGCTATTCTGTCGATGATGCTGGCTTGTGGGCTCTTGCCCGATATGCACTAAACCTTAGACAGCTTACTATATCATACTGCCAAGTCACTGGCCTGGGCCTGTGTCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CB658106             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GAGGTGCCTCCAGGATGTTAAGATGGTACACCTCTCATGGGTCTCTATAGAAGGGTTCGAGATGGCACTGAGAGCGGCTTGCGGGAGGCTGAAGAAACTGAAGATGCTGAGTGGGCTGAAGTCTGTGCTGTCTCCTGAGCTGCTCCAGATGCTGCAGGCCTGCGGCTGCCGCATCCGTTGGGTCAACAAGCCTCTTGTCTACAAGGACTAAACCTGCTCTCATATCATCATCTGTGCAGTGTTAATATCCTCGGATCATACACCATGGAGCCCTTACCAAGTCTAGCATGCTTACAAGCCATGTTAGATACCCGCAATAATCGTCAATTTTCATACCCAAGATGTACTGACGATGGTGTCTCTGCATTGCTGCAGTGCCATCCTTATGTTTGGCAACTCCTAGACCAATGTTGTCATCTTCAGATTAAAATCCAACATTTGCAAACATGAGGCATCGAAACAGTTATGTTCTGAGCAAGTGATCCTTGTACCAGACTGCAATGAAATGCTCTACACTTTCAATTGGTATATGCAAAGAACAATGGCATGTTTGCCTTTGTCATTGCTCCAACTCCAGGCTTGCTGACCGATGCATCTTTTAGAGTTTAAGAACAGCTTTAGATCGCAGAAAAACTCTTCCTTGATGCTCCAGGATCTGGGCTGGGACACTGGTTTCATGGTTGTCTGTATTGTATGACTGGTGGACCCGTCCTTTT  TTTTTTACCTTGATTACAATAATCTCGATGTACTCATTCAGGCAGAGATTTGAAGTAATGTATTGAATCAGTTTTTA                                                                                                                                                               ]
[-] EMBL CF305586             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GATGGTACACCTCTCATGGGTCTCTATAGAAGGGTTCGAGATGGCACTGAGAGCGGCTTGCGGGAGGCTGAAGAAACTGAAGATGCTGAGTGGGCTGAAGTCTGTGCTGTCTCCTGAGCTGCTCCAGATGCTGCAGGCCTGCGGCTGCCGCATCCGTTGGGTCAACAAGCCTCTTGTCTACAAGGACTAAACCTGCTCTCATATCATCATCTGTGCAGTGTTAATATCCTCGGATCATACACCATGGAGCCCTTACCAAGTCTAGCATGCTTACAAGCCATGTTAGATACCCGCAATAATCGTCAATTTACA ACCCAAGATGTACTGACGATGGTGTCTCTGCATTGCTGCAGTGCCATCCTTATGTTTGGCAACTCCTAGACCAATGTTGTCATCTTCAGATTAAAATCCAACATTTGCAAACATGAGGCATCGAAGCAGTTATGTTCTc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CA755069             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CATTGCTGCAGTGCCATCCTTATGTTTGGCAACTCCTAGACCAATGTTGTCATCTTCAGATTAAAATCCAACATTTGCAAACATGAGGCATCGAAACAGTTATGTTCTGAGCAAGTGATCCTTGTACCAGACTGCAATGAAATGCTCTACACTTTCAATTGGTATATGCAAAGAACAATGTCATGTTTGCCTTTGTCATTGCTCCTACTCCAGGCTTGCTGACCGATGCATCTCTTAGAGTTTAAGAACAGCTTTAGATCGCAGAAGAACTCTTCCTTGATGCTCCCGGATCTGGGCTGGGACACTGGTTTCATGGTTGTCTGCATTGCATGACTGGTGGACCCGTCCTTTTTCTTTTTTACCTCGACCACCATAATCCCCATGAACTCATTCCGGTTGAGATTTCACCCACCGCATTGACTCAGCTTTTATGACCGAGACAACCCACTAATATATCCCCTCTCTGGAGGGGGAGACCGGAACCCATTCTCCCTAAACTGCGCCCATAACGCCTGCCCTTGGGGGTACCCCACAAGCCGTGGGTGCGAAAACCTCCCTTCACCTAGTAAACCGCCCTGTTTGAATGTTCC]




>consensus_13676#0
ACCTCTCCGACTGCACCTCCCTGGAGGACACCTCCCTCGCCGCCGCGCTCTCCGGCGCGG
ATCTCGCCGGGGTGCGCCGGGTCTGCCTCGCCCGCGCCAGCGGCGTCGGGTGGCGCGGCC
TCTACGCGCTCGTGGCGGCGTGCCCGAGGCTGGAGGCCGTCGACCTGTCGCACTGCGTCG
GCGCCGGCGACCGCGAGGCCGCCGCGCTGGCCGCGGCGACGGGGCTGAGGGAATTGAGCC
TCGAGAAGTGCCTCGGCGTCACGGACATGGGGCTCGCCAAGGTGGTGGTCGGGTGCCCGA
GGCTGGAGAAGCTGAGCCTCAAGTGGTGCCGCGAGATCTCCGACATCGGCATCGATTTGC
TCTCCAAGAAGTGCCACGAGCTCCGGAGCCTCGACATCTCCTACCTCAAGGTTGGAAATG
AATCCCTTAGATCAATATCCTCACTTGAGAAACTTGAGGAGTTGGCAATGGTTTGTTGCT
CATGCATAGATGATGATGGCCTGGAATTACTAGGCAAGGGGAGCAACTCACTGCAGAGCG
TTGATGTTTCAAGATGTGATCATGTAACCTCCCAGGGATTAGCTTCACTCATAGATGGTC
ACAATTTTCTCCAGAAGTTAAATGCTGCTGATAGTTTGCATGAGATGAGACAGTCGTTTC
TGTCCAACTTGGCAAAACTGAAGGATACCTTGACAGTGCTTAGACTTGATGGTCTTGAAG
TCTCATCCTCTGTTCTTCTGGCCATTGGTGGTTGTAATAACTTGGTCGAGATTGGCCTTA
GCAAATGCAATGGCGTTACAGATGAAGGAATCTCTTCACTTGTAACTCAATGCAGCCACT
TAAGGGTTATTGATCTCACATGCTGTAACCTCCTTACCAACAATGCCCTTGATTCAATAG
CTGAGAACTGTAAGATGGTTGAACATCTCCGTTTGGAATCCTGTTCTTCCATAAGCGAAA
AGGGACTGGAGCAGATTGCAACCTCCTGCCCCAATCTAAAGGAGATAGACCTCACTGACT
GTGGAGTGAATGATGCAGCATTGCAGCACTTGGCCAAGTGCTCTGAACTGCTTGTACTGA
AATTAGGCCTGTGCTCAAGTATTTCTGACAAAGGTCTTGCTTTTATCAGTTCAAGCTGTG
GAAAGCTGATTGAGCTTGATCTCTATCGCTGCAATTCTATTACCGATGATGGGCTGGCAG
CTTTAGCTAATGGCTGCAAGAAGATTAAGATGCTAAACCTATGCTACTGCAACAAGATTA
CCGACAGTGGTTTGGGCCACCTAGGCTCTCTAGAGGAGCTCACAAACCTTGAACTGAGGT
GCTTGGTCCGTATAACAGGTATTGGAATCTCATCAGTTGCCATCGGCTGCAAGAACCTGA
TAGAGATAGACTTGAAGCGTTGCTATTCTGTCGATGATGCTGGCTTGTGGGCTCTTGCCC
GATATGCACTAAACCTTAGACAGCTTACTATATCATACTGCCAAGTCACTGGCCTGGGCC
TGTGTCACCTGTTAAGCTCCCTGAGGTGCCTCCAGGATGTTAAGATGGTACACCTCTCAT
GGGTCTCTATAGAAGGGTTCGAGATGGCACTGAGAGCGGCTTGCGGGAGGCTGAAGAAAC
TGAAGATGCTGAGTGGGCTGAAGTCTGTGCTGTCTCCTGAGCTGCTCCAGATGCTGCAGG
CCTGCGGCTGCCGCATCCGTTGGGTCAACAAGCCTCTTGTCTACAAGGACTAAACCTGCT
CTCATATCATCATCTGTGCAGTGTTAATATCCTCGGATCATACACCATGGAGCCCTTACC
AAGTCTAGCATGCTTACAAGCCATGTTAGATACCCGCAATAATCGTCAATTTTCATACCC
AAGATGTACTGACGATGGTGTCTCTGCATTGCTGCAGTGCCATCCTTATGTTTGGCAACT
CCTAGACCAATGTTGTCATCTTCAGATTAAAATCCAACATTTGCAAACATGAGGCATCGA
AACAGTTATGTTCTGAGCAAGTGATCCTTGTACCAGACTGCAATGAAATGCTCTACACTT
TCAATTGGTATATGCAAAGAACAATGGCATGTTTGCCTTTGTCATTGCTCCAACTCCAGG
CTTGCTGACCGATGCATCTTTTAGAGTTTAAGAACAGCTTTAGATCGCAGAAAAACTCTT
CCTTGATGCTCCAGGATCTGGGCTGGGACACTGGTTTCATGGTTGTCTGTATTGTATGAC
TGGTGGACCCGTCCTTTTTTTTTTACCTTGATTACAATAATCTCGATGTACTCATTCAGG
CAGAGATTTGAAGTAATGTATTGAATCAGTTTTTATGACCGAGACAACCCACTAATATAT
CCCCTCTCTGGAGGGGGAGACCGGAACCCATTCTCCCTAAACTGCGCCCATAACGCCTGC
CCTTGGGGGTACCCCACAAGCCGTGGGTGCGAAAACCTCCCTTCACCTAGTAAACCGCCC
TGTTTGAATGTTCC

consensusID : consensus_13676#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 621
fasta sequence 
                              [CCCTGGAGCCCTTACCAATGTCTAGCATGCTTACCGACCCATGTTTAGATACCCCGCAATAATCGTCGATTTTCATACCCAAGATGTACTGAGGATGGTGTCTGCTTTGCGGCGGT-CCATCCTTGTGTTTGGCAACTCCTAGACCAATGTTGTCATCTTCAGATTAAAATCCAACATTTGCAAACATGAGGCATCGAAACAGTTATGTTCTGAGCAAGTGAGCCTTGTACCAGACTGCAATGAAATGCTCTACACTTTCAATTGGTATATGCAAAGAACAAGCAGGGACATGTAAATGTAATGGCATGTTTGCCTTTGTCATTGCTCCAACTCCAGGCTTGCTGACCGATGCATCTTTTAGAGTTTAAGAACAGCTTTAGATCGGCAGAAAAACTCTTGATGCTCCAGGATCTGGGGCTCTGGGCTGGGACACTGGTTTCATGGTTGTCCGTATTGTATGACTGGTGACCCGTCCTCTTTTTTTTTTTATCATGATTACAATAATCTCGATGTACTTAATTCAGGCAGAGTTTTGAAGTACTGTGGTGAATCAGATTTTATATGTCAGGAATGCATGACCAGCAGTCGGATTTGCTAATTAGCGCATACGCGTTTCAAAAA]

[+] EMBL BM418595             [CCCTGGAGCCCTTACCAATGTCTAGCATGCTTACCGACCCATGTTTAGATACCCCGCAATAATCGTCGATTTTCATACCCAAGATGTACTGAGGATGGTGTCTGCTTTGCGGCGGT CCATCCTTGTGTTTGGCAACTCCTAGACCAATGTTGTCATCTTCAGATTAAAATCCAACATTTGCAAACATGAGGCATCGAAACAGTTATGTTCTGAGCAAGTGAGCCTTGTACCAGACTGCAATGAAATGCTCTACACTTTCAATTGGTATATGCAAAGAACAAGCAGGGACATGTAAATGTAATGGCATGTTTGCCTTTGTCATTGCTCCAACTCCAGGCTTGCTGACCGATGCATCTTTTAGAGTTTAAGAACAGCTTTAGATC GCAGAAAAACTCTTGATGCTCCAGGATCTGGGGCTCT GGCTGGGACACTGGTTTCAT GTTGTCCGTATTGTATGACTGGTGACCCGTCCTC TTTTTTTTTTATCATGATTAC ATAATCTCGATGTACTTAATTCAGGCAaaaa                                                                                          ]
[+] EMBL BI813027             [                                                                                       ACTGAGGATGGTGTCTGCTTTGCGGCGGTGCCATCCTTGTGTTTGGCAACTCCTAGACC ATGTTGTCATCTTCAGATTAAAATCC ACATTTGC AACATGAGGCATCGAAACAGTTATGTTCTGAGCAAGTGAGCCTTGTACCAGACTGCAATGAAATGCTCTACACTTTC ATTGGTATATGCAAAAAA                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BM419826             [                                                                                                                                                                                                                                                                                       ccgGCAGGGACATGTAAATGTAATGGCATGTTTGCCTTTGTCATTGCTCCAACTCCAGGCTTGCTGACCGATGCATCTTTTAGAGTTTAAGAACAGCTTTAGATCGGCAGAAAAACTCTTGATGCTCCAGGATCTGGGGCTCTGGGCTGGGACACTGGTTTCATGGTTGTCCGTATTGTATGACTGGTGACCCGTCCTCTTTTTTTTTTTATCATGATTACAATAATCTCGATGTACTTAATTCAGGCAGAGTTTTGAAGTACTGTGGTGAATCAGATTTTATATGTCAGGAATGCATGACCAGCAGTCGGATTTGCTAATTAGCGCATACGCGTTTCAAAAA]
[+] EMBL BI811827             [                                                                                                                                                                                                                                                                                                            ccgGGCATGTTTGCCTTTGTCATTGCTCCAACTCCAGGCTTGCTGACCGATGCATCTTTTAGAGTTTAAGAACAGCTTTAGATCGGCAGAAAAACTCTTGATGCTCCAGGATCTGGGGCTCTGGGCTGGGACACTGGTTTCATGGTTGTCCGTATTGTATGACTGGTGACCCGTCCTCTTTTTTTTTTTATCATGATTACAATAATCTCGATGTACTTAATTCAGGCAGAGTTTTGAAaaaaaaa                                                                             ]




>consensus_13676#1
CCCTGGAGCCCTTACCAATGTCTAGCATGCTTACCGACCCATGTTTAGATACCCCGCAAT
AATCGTCGATTTTCATACCCAAGATGTACTGAGGATGGTGTCTGCTTTGCGGCGGTCCAT
CCTTGTGTTTGGCAACTCCTAGACCAATGTTGTCATCTTCAGATTAAAATCCAACATTTG
CAAACATGAGGCATCGAAACAGTTATGTTCTGAGCAAGTGAGCCTTGTACCAGACTGCAA
TGAAATGCTCTACACTTTCAATTGGTATATGCAAAGAACAAGCAGGGACATGTAAATGTA
ATGGCATGTTTGCCTTTGTCATTGCTCCAACTCCAGGCTTGCTGACCGATGCATCTTTTA
GAGTTTAAGAACAGCTTTAGATCGGCAGAAAAACTCTTGATGCTCCAGGATCTGGGGCTC
TGGGCTGGGACACTGGTTTCATGGTTGTCCGTATTGTATGACTGGTGACCCGTCCTCTTT
TTTTTTTTATCATGATTACAATAATCTCGATGTACTTAATTCAGGCAGAGTTTTGAAGTA
CTGTGGTGAATCAGATTTTATATGTCAGGAATGCATGACCAGCAGTCGGATTTGCTAATT
AGCGCATACGCGTTTCAAAAA

consensusID : consensus_13676#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 412
fasta sequence 
                              [CATACCCCAAGATGGTGACTGGAGGATGGTGTCTGCTTTCCGGCGTGCCATGCCTTGTGGTGTTGCCAACTCCTGAGACCAATGGTTGTCATCTTCAGATTAAAATCCCACATGTGCACAACATGAGGCATCGAAACAAGTTATGTTCTGAGCAAGTGAGCCTTGTACCAGACTCAATGAAATGCTCTGACACTTTGCAATTGGGTATATCCCAAGAACAAGCAGGGACATGTAAATGGTAATGGCATGGTTTGCCTTTGTGCATTGGCTCCAACTCCAGGCTTGCTGACCGATGCATCTTTTAGAGTGTTAAGAACAGCTTTAGATCGCAGAAAAACTCTTGGATGCTCCCAGGATCTGGGGCTCTGGCTGGGACACGGGTTTCATGGTTGTCCGTATTGTATGACTGGGG]

[+] EMBL BI809450             [CATACCCCAAGATGGTGACTGGAGGATGGTGTCTGCTTTCCGGCGTGCCATGCCTTGTGGTGTTGCCAACTCCTGAGACCAATGGTTGTCATCTTCAGATTAAAATCCCACATGTGCACAACATGAGGCATCGAAACAAGTTATGTTCTGAGCAAGTGAGCCTTGTACCAGACTCAATGAAATGCTCTGACACTTTGCAATTGGGTATATCCCAAGAACAAGCAGGGACATGTAAATGGTAATGGCATGGTTTGCCTTTGTGCATTGGCTCCAACTCCAGGCTTGCTGACCGATGCATCTTTTAGAGTGTTAAGAACAGCTTTAGATCGCAGAAAAACTCTTGGATGCTCCCAGGATCTGGGGCTCTGGCTGGGACACGGGTTTCATGGTTGTCCGTATTGTATGACTGGGG]




>consensus_13676#2
CATACCCCAAGATGGTGACTGGAGGATGGTGTCTGCTTTCCGGCGTGCCATGCCTTGTGG
TGTTGCCAACTCCTGAGACCAATGGTTGTCATCTTCAGATTAAAATCCCACATGTGCACA
ACATGAGGCATCGAAACAAGTTATGTTCTGAGCAAGTGAGCCTTGTACCAGACTCAATGA
AATGCTCTGACACTTTGCAATTGGGTATATCCCAAGAACAAGCAGGGACATGTAAATGGT
AATGGCATGGTTTGCCTTTGTGCATTGGCTCCAACTCCAGGCTTGCTGACCGATGCATCT
TTTAGAGTGTTAAGAACAGCTTTAGATCGCAGAAAAACTCTTGGATGCTCCCAGGATCTG
GGGCTCTGGCTGGGACACGGGTTTCATGGTTGTCCGTATTGTATGACTGGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13676#1      ------------------------------------------------------------
consensus_13676#2      ------------------------------------------------------------
consensus_13676#0      ACCTCTCCGACTGCACCTCCCTGGAGGACACCTCCCTCGCCGCCGCGCTCTCCGGCGCGG 60
                                                                                   

consensus_13676#1      ------------------------------------------------------------
consensus_13676#2      ------------------------------------------------------------
consensus_13676#0      ATCTCGCCGGGGTGCGCCGGGTCTGCCTCGCCCGCGCCAGCGGCGTCGGGTGGCGCGGCC 120
                                                                                   

consensus_13676#1      ------------------------------------------------------------
consensus_13676#2      ------------------------------------------------------------
consensus_13676#0      TCTACGCGCTCGTGGCGGCGTGCCCGAGGCTGGAGGCCGTCGACCTGTCGCACTGCGTCG 180
                                                                                   

consensus_13676#1      ------------------------------------------------------------
consensus_13676#2      ------------------------------------------------------------
consensus_13676#0      GCGCCGGCGACCGCGAGGCCGCCGCGCTGGCCGCGGCGACGGGGCTGAGGGAATTGAGCC 240
                                                                                   

consensus_13676#1      ------------------------------------------------------------
consensus_13676#2      ------------------------------------------------------------
consensus_13676#0      TCGAGAAGTGCCTCGGCGTCACGGACATGGGGCTCGCCAAGGTGGTGGTCGGGTGCCCGA 300
                                                                                   

consensus_13676#1      ------------------------------------------------------------
consensus_13676#2      ------------------------------------------------------------
consensus_13676#0      GGCTGGAGAAGCTGAGCCTCAAGTGGTGCCGCGAGATCTCCGACATCGGCATCGATTTGC 360
                                                                                   

consensus_13676#1      ------------------------------------------------------------
consensus_13676#2      ------------------------------------------------------------
consensus_13676#0      TCTCCAAGAAGTGCCACGAGCTCCGGAGCCTCGACATCTCCTACCTCAAGGTTGGAAATG 420
                                                                                   

consensus_13676#1      ------------------------------------------------------------
consensus_13676#2      ------------------------------------------------------------
consensus_13676#0      AATCCCTTAGATCAATATCCTCACTTGAGAAACTTGAGGAGTTGGCAATGGTTTGTTGCT 480
                                                                                   

consensus_13676#1      ------------------------------------------------------------
consensus_13676#2      ------------------------------------------------------------
consensus_13676#0      CATGCATAGATGATGATGGCCTGGAATTACTAGGCAAGGGGAGCAACTCACTGCAGAGCG 540
                                                                                   

consensus_13676#1      ------------------------------------------------------------
consensus_13676#2      ------------------------------------------------------------
consensus_13676#0      TTGATGTTTCAAGATGTGATCATGTAACCTCCCAGGGATTAGCTTCACTCATAGATGGTC 600
                                                                                   

consensus_13676#1      ------------------------------------------------------------
consensus_13676#2      ------------------------------------------------------------
consensus_13676#0      ACAATTTTCTCCAGAAGTTAAATGCTGCTGATAGTTTGCATGAGATGAGACAGTCGTTTC 660
                                                                                   

consensus_13676#1      ------------------------------------------------------------
consensus_13676#2      ------------------------------------------------------------
consensus_13676#0      TGTCCAACTTGGCAAAACTGAAGGATACCTTGACAGTGCTTAGACTTGATGGTCTTGAAG 720
                                                                                   

consensus_13676#1      ------------------------------------------------------------
consensus_13676#2      ------------------------------------------------------------
consensus_13676#0      TCTCATCCTCTGTTCTTCTGGCCATTGGTGGTTGTAATAACTTGGTCGAGATTGGCCTTA 780
                                                                                   

consensus_13676#1      ------------------------------------------------------------
consensus_13676#2      ------------------------------------------------------------
consensus_13676#0      GCAAATGCAATGGCGTTACAGATGAAGGAATCTCTTCACTTGTAACTCAATGCAGCCACT 840
                                                                                   

consensus_13676#1      ------------------------------------------------------------
consensus_13676#2      ------------------------------------------------------------
consensus_13676#0      TAAGGGTTATTGATCTCACATGCTGTAACCTCCTTACCAACAATGCCCTTGATTCAATAG 900
                                                                                   

consensus_13676#1      ------------------------------------------------------------
consensus_13676#2      ------------------------------------------------------------
consensus_13676#0      CTGAGAACTGTAAGATGGTTGAACATCTCCGTTTGGAATCCTGTTCTTCCATAAGCGAAA 960
                                                                                   

consensus_13676#1      ------------------------------------------------------------
consensus_13676#2      ------------------------------------------------------------
consensus_13676#0      AGGGACTGGAGCAGATTGCAACCTCCTGCCCCAATCTAAAGGAGATAGACCTCACTGACT 1020
                                                                                   

consensus_13676#1      ------------------------------------------------------------
consensus_13676#2      ------------------------------------------------------------
consensus_13676#0      GTGGAGTGAATGATGCAGCATTGCAGCACTTGGCCAAGTGCTCTGAACTGCTTGTACTGA 1080
                                                                                   

consensus_13676#1      ------------------------------------------------------------
consensus_13676#2      ------------------------------------------------------------
consensus_13676#0      AATTAGGCCTGTGCTCAAGTATTTCTGACAAAGGTCTTGCTTTTATCAGTTCAAGCTGTG 1140
                                                                                   

consensus_13676#1      ------------------------------------------------------------
consensus_13676#2      ------------------------------------------------------------
consensus_13676#0      GAAAGCTGATTGAGCTTGATCTCTATCGCTGCAATTCTATTACCGATGATGGGCTGGCAG 1200
                                                                                   

consensus_13676#1      ------------------------------------------------------------
consensus_13676#2      ------------------------------------------------------------
consensus_13676#0      CTTTAGCTAATGGCTGCAAGAAGATTAAGATGCTAAACCTATGCTACTGCAACAAGATTA 1260
                                                                                   

consensus_13676#1      ------------------------------------------------------------
consensus_13676#2      ------------------------------------------------------------
consensus_13676#0      CCGACAGTGGTTTGGGCCACCTAGGCTCTCTAGAGGAGCTCACAAACCTTGAACTGAGGT 1320
                                                                                   

consensus_13676#1      ------------------------------------------------------------
consensus_13676#2      ------------------------------------------------------------
consensus_13676#0      GCTTGGTCCGTATAACAGGTATTGGAATCTCATCAGTTGCCATCGGCTGCAAGAACCTGA 1380
                                                                                   

consensus_13676#1      ------------------------------------------------------------
consensus_13676#2      ------------------------------------------------------------
consensus_13676#0      TAGAGATAGACTTGAAGCGTTGCTATTCTGTCGATGATGCTGGCTTGTGGGCTCTTGCCC 1440
                                                                                   

consensus_13676#1      ------------------------------------------------------------
consensus_13676#2      ------------------------------------------------------------
consensus_13676#0      GATATGCACTAAACCTTAGACAGCTTACTATATCATACTGCCAAGTCACTGGCCTGGGCC 1500
                                                                                   

consensus_13676#1      ------------------------------------------------------------
consensus_13676#2      ------------------------------------------------------------
consensus_13676#0      TGTGTCACCTGTTAAGCTCCCTGAGGTGCCTCCAGGATGTTAAGATGGTACACCTCTCAT 1560
                                                                                   

consensus_13676#1      ------------------------------------------------------------
consensus_13676#2      ------------------------------------------------------------
consensus_13676#0      GGGTCTCTATAGAAGGGTTCGAGATGGCACTGAGAGCGGCTTGCGGGAGGCTGAAGAAAC 1620
                                                                                   

consensus_13676#1      ------------------------------------------------------------
consensus_13676#2      ------------------------------------------------------------
consensus_13676#0      TGAAGATGCTGAGTGGGCTGAAGTCTGTGCTGTCTCCTGAGCTGCTCCAGATGCTGCAGG 1680
                                                                                   

consensus_13676#1      ------------------------------------------------------------
consensus_13676#2      ------------------------------------------------------------
consensus_13676#0      CCTGCGGCTGCCGCATCCGTTGGGTCAACAAGCCTCTTGTCTACAAGGACTAAACCTGCT 1740
                                                                                   

consensus_13676#1      --------------------------------------------CCCTGGAGCCCTTACC 16
consensus_13676#2      ------------------------------------------------------------
consensus_13676#0      CTCATATCATCATCTGTGCAGTGTTAATATCCTCGGATCATACACCATGGAGCCCTTACC 1800
                                                                                   

consensus_13676#1      AATGTCTAGCATGCTTACCGACCCATGTTTAGATACCCCGCAATAATCGTCGATTTTCAT 76
consensus_13676#2      ---------------------------------------------------------CAT 3
consensus_13676#0      AA-GTCTAGCATGCTTAC-AAGCCATGTT-AGATACCC-GCAATAATCGTCAATTTTCAT 1856
                                                                                ***

consensus_13676#1      ACCC-AAGATGT--ACTG-AGGATGGTGTCT--GCTTTGCGGCGGTCCAT-CCTTGTGT- 128
consensus_13676#2      ACCCCAAGATGGTGACTGGAGGATGGTGTCT--GCTTTCCGGCGTGCCATGCCTTGTGGT 61
consensus_13676#0      ACCC-AAGATGT--ACTG-ACGATGGTGTCTCTGCATTGCTGCAGTGCCATCCTTATGT- 1911
                       **** ******   **** * **********  ** ** * **    *   **** **  

consensus_13676#1      -TTGGCAACTCCT-AGACCAATG-TTGTCATCTTCAGATTAAAATCCAACATTTGCA-AA 184
consensus_13676#2      GTTGCCAACTCCTGAGACCAATGGTTGTCATCTTCAGATTAAAATCCCACATGTGCACAA 121
consensus_13676#0      -TTGGCAACTCCT-AGACCAATG-TTGTCATCTTCAGATTAAAATCCAACATTTGCA-AA 1967
                        *** ******** ********* *********************** **** **** **

consensus_13676#1      CATGAGGCATCGAAACA-GTTATGTTCTGAGCAAGTGAGCCTTGTACCAGACTGCAATGA 243
consensus_13676#2      CATGAGGCATCGAAACAAGTTATGTTCTGAGCAAGTGAGCCTTGTACCAGACT-CAATGA 180
consensus_13676#0      CATGAGGCATCGAAACA-GTTATGTTCTGAGCAAGTGATCCTTGTACCAGACTGCAATGA 2026
                       ***************** ******************** ************** ******

consensus_13676#1      AATGCTCT-ACACTTT-CAATTGG-TATATGCAAAGAACAAGCAGGGACATGTAAATG-T 299
consensus_13676#2      AATGCTCTGACACTTTGCAATTGGGTATATCCCAAGAACAAGCAGGGACATGTAAATGGT 240
consensus_13676#0      AATGCTCT-ACACTTT-CAATTGG-TATATGCAAAGAACAA------------------- 2064
                       ******** ******* ******* ***** * ********                   

consensus_13676#1      AATGGCATG-TTTGCCTTTGT-CATTG-CTCCAACTCCAGGCTTGCTGACCGATGCATCT 356
consensus_13676#2      AATGGCATGGTTTGCCTTTGTGCATTGGCTCCAACTCCAGGCTTGCTGACCGATGCATCT 300
consensus_13676#0      --TGGCATG-TTTGCCTTTGT-CATTG-CTCCAACTCCAGGCTTGCTGACCGATGCATCT 2119
                         ******* *********** ***** ********************************

consensus_13676#1      TTTAGAGT-TTAAGAACAGCTTTAGATCGGCAGAAAAACTCTTG-ATGCTCC-AGGATCT 413
consensus_13676#2      TTTAGAGTGTTAAGAACAGCTTTAGATCG-CAGAAAAACTCTTGGATGCTCCCAGGATCT 359
consensus_13676#0      TTTAGAGT-TTAAGAACAGCTTTAGATCG-CAGAAAAACTCTT-----CCTTGATGCTCC 2172
                       ******** ******************** *************     *    * * ** 

consensus_13676#1      GGGGCTCTGGGCTGGGACACTGGTTTCATGGTTGTCCGTATTGTATGACTGGTGACCCGT 473
consensus_13676#2      GGGGCTCTGG-CTGGGACACGGGTTTCATGGTTGTCCGTATTGTATGACTGGGG------ 412
consensus_13676#0      AGGA-TCTGGGCTGGGACACTGGTTTCATGGTTGTCTGTATTGTATGACTGGTGGACC-- 2229
                        **  ***** ********* *************** *************** *      

consensus_13676#1      CCTCTTTTTTTTTTTATCATGATTACAATAATCTCGATGTACTTAATTCAGGCAGAGTTT 533
consensus_13676#2      ------------------------------------------------------------
consensus_13676#0      CGTCCTTTTTTTTTTACCTTGATTACAATAATCTCGATGTACTCA-TTCAGGCAGAGATT 2288
                                                                                   

consensus_13676#1      TGAAGTACTGTGGTGAATCAGATTTTATATGTCAGGAATGC-------ATGACCAGCAGT 586
consensus_13676#2      ------------------------------------------------------------
consensus_13676#0      TGAAGTAATGTATTGAATCAGTTTTTATGACCGAGACAACCCACTAATATATCCCCTCTC 2348
                                                                                   

consensus_13676#1      CGGATTTGCTAATTAGCGCATACGCGTTTCAAAAA------------------------- 621
consensus_13676#2      ------------------------------------------------------------
consensus_13676#0      TGGAGGGGGAGACCGGAACCCATTCTCCCTAAACTGCGCCCATAACGCCTGCCCTTGGGG 2408
                                                                                   

consensus_13676#1      ------------------------------------------------------------
consensus_13676#2      ------------------------------------------------------------
consensus_13676#0      GTACCCCACAAGCCGTGGGTGCGAAAACCTCCCTTCACCTAGTAAACCGCCCTGTTTGAA 2468
                                                                                   

consensus_13676#1      ------
consensus_13676#2      ------
consensus_13676#0      TGTTCC 2474


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)