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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13686#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 733 fasta sequence
[GCTACTACCTCGGCATGTTCCTCGGCGGCGCCTACCAGGAGGCCCTCGGCGGCCTCCCAACCTGTTCGGCGGGCCGAGCGTGGTGCGCGTGTCGCAGAGCGACGGGCCGCACTGCTTCGCCGTCACGCGCGCGGCGGCGGGGCCGTCGTGCGCCG-ACGTGCT-CCGCTCGATGCAGCACGAG-CCCGAGGTG-ATGTTCGAGGTGCTC-AAGCAGAGGACCGACGGCG-CCACCGCCGCCGCGCTCGCCAGGGCGTTCGGCGCAATGCCGTACCTGTCGTTCGACCCGGAGGCCGCGGCGATGGCCAGCGGGGAGAGCAGCGGCATGAGCAGCGACTCGGAGGGGT-CGGCCGCCGGCGCGGCGGAGGAGGATGACG-ACG-AGTGGGAGTTCATGCGGGGGCTCACCGTGTGACCG-AGGCAGCCATCGCCGGCTTCTT-GGTGTTCA-CGCG-AGGAGTTCTTGCACCTCCTTCTCCTCCTCCATTGTACCTGTCGCACTG-AGC-AGT-CGTCGTCG-CCGTCGTGTT-CGTCGCCGTCGCCGACGGTAATCTCCACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGATTAAAAAAAAAAAAAA]
[+] EMBL CB653666 [GCTACTACCTCGGCATGTTCCTCGGCGGCGCCTACCAGGAGGCCCTCGGCGGCCTCCCAACCTGTTCGGCGGGCCGAGCGTGGTGCGCGTGTCGCAGAGCGACGGGCCGCACTGCTTCGCCGTCACGCGCGCGGCGGCGGGGCCGTCGTGCGCCG ACGTGCT CCGCTCGATGCAGCACGAG CCCGAGGTG ATGTTCGAGGTGCTC AAGCAGAGGACCGACGGCG CCACCGCCGCCGCGCTCGCCAGGGCGTTCGGCGCAATGCCGTACCTGTCGTTCGACCCGGAGGCCGCGGCGATGGCCAGCGGGGAGAGCAGCGGCATGAGCAGCGACTCGGAGGGGT CGGCCGCCGGCGCGGCGGAGGAGGATGACT ACC AGTGGGAGTTCATGCGGGGGCTCACCGTGTGACCG AGGCAGCCATCGCCGGCTTCTT GGTGTTCA CGCG AGGAGTTCTTGCACCTCCTTCTCCTCCTCCATTGTACCTGTCGCACTG AGC AGT CGTCGTCG CCGTCGTGTT CGTCGCCGTCGCCGACGGTAATCTCCACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTT ]
[-] EMBL CB678671 [ caCAACCTGTTCGGCGGTCCGAGCGTGGTGCGCGTGTCGCAGAGCGACGGGCCGCACTGCTTCGCCGTCACGCGCGCGGCGGCGGGGCCGTCGTGCGCCG ACGTGCT CCGCTCGATGCAGCACGAG CCCGAGGTG ATGTTCGAGGTGCTC AAGCAGAGGACCGACGGCG CCACCGCCGCCGCGCTCGCCAGGGCGTTCGGCGCAATGCCGTACCTGTCGTTCGACCCGGAGGCCGCGGCGATGGCCAGCGGGGAGAGCAGCGGCATGAGCAGCGACTCGGAGGGGT CGGCCGCCGGCGCGGCGGAGGAGGATGACG ACG AGTGGGAGTTCATGCGGGGGCTCACCGTGTGACCG AGGCAGCCATCGCCGGCTTCTT GGTGTTCA CGCG AGGAGTTCTTGCACCTCCTTCTCCTCCTCCATTGTACCTGTCGCACTG AGC AGT CGTCGTCG CCGTCGTGTT CGTCGCCGTCGCCGACGGTAATCTCCACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATCTCTTCAGGGAA ]
[+] EMBL AU056473 [ GGGGCCTTCGTGCGCCGAACGTGCTCCCGCTCGATGCAGCACGAGCCCCGAGGTGAATGTTCGAGGTGCTCAAAGCAGAGGACCGACGGCGCCCACCGCCGCCGCGCTCGCCAGGGCGTTCNGCGCAATGCCGTACCTGTCGTTCGACCCGGAGGCCGCGGCGATGGCCAGCGGGGAGAGCAGCGGCATGAGCAGCGACTCGGAGGGGTNCGGCCGCCGGCGCGGCGGAGGAGGATGACGAACGAAGTGGGAGTTCATGCGGGGGCTCACCGTGTGACCG AGGCAGCCATCGCCGGCTTCTT GGTGTTCA CGCG AGGAGTTCTTGCACCTCCTTCTCCTCCTCCATTGTACCTGTCGCACTG AGC AGT CGTCGTCG CCGTCGTGTT CGTCGCCGTCGCCGACGGTAATCTCCACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGATTAAAAAAAAA ]
[-] EMBL OSS13230A [ ACTTNTCGTTCGACCCGGAGGCCNC GCGATGGCCANC GGGAAAACANCGGCATAAGCAGCGACTCGAAGGGGT CGGCC CCGGCGCGGCGGAGGAGGATGACG ACG AGTGGAAGTTCATGCGGGGGCTCACCGTGTGACCG AGGCAGCCATCGCCGGCTTCTT GGTGTTCA CGCG AGGAGTTCTTGCACCTCCTTCTCCTCCTCCATTGTACCTGTCGCACTG AGC AGT CGTCGTCG CCGTCGTGTT CGTCGCCGTCGCCGACGGTAATCTCCACCCAGTGTGTGGTTGTATCGTGTCATGGTNGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTNGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTT ]
[+] EMBL C99670 [ ttcGGGGCTNACCGTGTGACCGAAGGAAGCAATCGCCGGCTTCTT GGTGTTCA CGCGAAGAAGTTCTTGCACCTCCTTCTCCTCCTCCATTGTACCTGTCGCACTGAAGA AGT CGTCGTCG CCGTCGTGTT CGTCGCCGTCGCCGACGGTAATCTCCACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGATTAAAAA ]
[+] EMBL AU029789 [ aaacCCGTNTGACCG AGGCAGCCATCGCCGGCTTCTTGGGNGTTCA CGCG AGGAGTTNTTGCACCTCCTTCTCCTCCTCCATNGTACCTGTCGCACTG AGC AGT CGTCGTCG CCGTCGTGTT CGTCGCCGTCGCCGACGGTAATCTCCACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGATTAAAAAAAAA ]
[+] EMBL AU033157 [ ttcCTT GGTGTTCACCCCA AGNAGTTCTTGCACCTCCTTCTCCTCCTCCATTGTACCTGTCGCACTG AGC AGTCCGTCGTCG CCGTCGTGTTCCGTCGCCGTCGCCGACGGTAATCTCCACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAANAAATAAGTTTCGTTCGATTAAAAAAAAAAAAAA]
[+] EMBL AU033158 [ TCCTCCTCCATTGTACCTGTCGCACTG AGCAAGTCCGTCGTCGCCCGTCGTGTTCCGTCGCCGTCGCCGACGGTAATCTCCACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAANCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGATTAAAAAAAAAAAAAA]
[+] EMBL C97714 [ G AGN AGT CGTCGTCGANCGTCGTGTT CGTCGTCGTCGCCGACGGTAATCTCCACCNAGTGTGTGGTTGTATCGTGNNATGGTCGTTGNCGTCGGNCGTCTCGTCGCCGTAGTCTCGNCGGAGTTTCTGNCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGATTAAAAAAA ]
[+] EMBL AU078191 [ ACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCNTNTCGTCGCCGTNGTCTNGCCGGNGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCNGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGATTAAAAA ]
[+] EMBL AU078200 [ GTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGATTAAAAAA ]
consensusID : consensus_13686#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence
[CATGCGGGGGCTCACCGTGTGACCGAGGNAGCCATCGCCGGCNTCTTGGTGTTCACGCGAGGAGTTCTTGCACCTCCTTCTCCTCCTCCATTGTACCTGTCGCACTGAGCAGTCGTCGTCGCCGTCGTGTTCGTCGCCGTCGCCGACGNGTAATCTCCACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGATTATTAGTTGCTTCATT]
[-] EMBL C28875 [CATGCGGGGGCTCACCGTGTGACCGAGGNAGCCATCGCCGGCNTCTTGGTGTTCACGCGAGGAGTTCTTGCACCTCCTTCTCCTCCTCCATTGTACCTGTCGCACTGAGCAGTCGTCGTCGCCGTCGTGTTCGTCGCCGTCGCCGACGNGTAATCTCCACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTTCGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGATTATTAGTTGCTTCATT]
consensusID : consensus_13686#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 205 fasta sequence
[CGTGTACGTCGACCGTCANCGACNGTAATCTCCACCCANTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGNCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGNCGCCACCTTTTTATTTNGCAANCGTCANTGTCCACTGTTTCGCTCTCCTTTTGNAATTTCATCAGNGAATNAGATGNNGNACAAATAAGTTTCGT]
[+] EMBL AU078729 [CGTGTACGTCGACCGTCANCGACNGTAATCTCCACCCANTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGNCGTCTCGTCGCCGTAGTCTCGCCGGAGTTTCTGNCGCCACCTTTTTATTTNGCAANCGTCANTGTCCACTGTTTCGCTCTCCTTTTGNAATTTCATCAGNGAATNAGATGNNGNACAAATAAGTTTCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13686#0 GCTACTACCTCGGCATGTTCCTCGGCGGCGCCTACCAGGAGGCCCTCGGCGGCCTCCCAA 60
consensus_13686#1 ------------------------------------------------------------
consensus_13686#2 ------------------------------------------------------------
consensus_13686#0 CCTGTTCGGCGGGCCGAGCGTGGTGCGCGTGTCGCAGAGCGACGGGCCGCACTGCTTCGC 120
consensus_13686#1 ------------------------------------------------------------
consensus_13686#2 ------------------------------------------------------------
consensus_13686#0 CGTCACGCGCGCGGCGGCGGGGCCGTCGTGCGCCGACGTGCTCCGCTCGATGCAGCACGA 180
consensus_13686#1 ------------------------------------------------------------
consensus_13686#2 ------------------------------------------------------------
consensus_13686#0 GCCCGAGGTGATGTTCGAGGTGCTCAAGCAGAGGACCGACGGCGCCACCGCCGCCGCGCT 240
consensus_13686#1 ------------------------------------------------------------
consensus_13686#2 ------------------------------------------------------------
consensus_13686#0 CGCCAGGGCGTTCGGCGCAATGCCGTACCTGTCGTTCGACCCGGAGGCCGCGGCGATGGC 300
consensus_13686#1 ------------------------------------------------------------
consensus_13686#2 ------------------------------------------------------------
consensus_13686#0 CAGCGGGGAGAGCAGCGGCATGAGCAGCGACTCGGAGGGGTCGGCCGCCGGCGCGGCGGA 360
consensus_13686#1 ------------------------------------------------------------
consensus_13686#2 ------------------------------------------------------------
consensus_13686#0 GGAGGATGACGACGAGTGGGAGTTCATGCGGGGGCTCACCGTGTGACCGAGGCAGCCATC 420
consensus_13686#1 ------------------------CATGCGGGGGCTCACCGTGTGACCGAGGNAGCCATC 36
consensus_13686#2 ------------------------------------------------------------
consensus_13686#0 GCCGGCTTCTTGGTGTTCACGCGAGGAGTTCTTGCACCTCCTTCTCCTCCTCCATTGTAC 480
consensus_13686#1 GCCGGCNTCTTGGTGTTCACGCGAGGAGTTCTTGCACCTCCTTCTCCTCCTCCATTGTAC 96
consensus_13686#2 ------------------------------------------------------------
consensus_13686#0 CTGTCGCACTGAGCAGTCGTCGTCGCCGTCGTGTTCGTCG-CCGTCGCCGACGG-TAATC 538
consensus_13686#1 CTGTCGCACTGAGCAGTCGTCGTCGCCGTCGTGTTCGTCG-CCGTCGCCGACGNGTAATC 155
consensus_13686#2 -----------------------------CGTGTACGTCGACCGTCANCGACNG-TAATC 30
***** ***** ***** **** *****
consensus_13686#0 TCCACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGT 598
consensus_13686#1 TCCACCCAGTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGGCGTCTCGTCGCCGT 215
consensus_13686#2 TCCACCCANTGTGTGGTTGTATCGTGTCATGGTCGTTGTCGTCGGNCGTCTCGTCGCCGT 90
******** ************************************ **************
consensus_13686#0 AGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTT 658
consensus_13686#1 AGTCTCGCCGGAGTTTCTGGCGCCACCTTTTTATTTCGCAAGCGTCAGTGTCCACTGTTT 275
consensus_13686#2 AGTCTCGCCGGAGTTTCTGNCGCCACCTTTTTATTTNGCAANCGTCANTGTCCACTGTTT 150
******************* **************** **** ***** ************
consensus_13686#0 CGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGAT 718
consensus_13686#1 CGCTCTCCTTTTGAAATTTCATCAGAGAATAAGATGAGGAACAAATAAGTTTCGTTCGAT 335
consensus_13686#2 CGCTCTCCTTTTGNAATTTCATCAGNGAATNAGATGNNGNACAAATAAGTTTCGT----- 205
************* *********** **** ***** * ***************
consensus_13686#0 TAAAAAAAAAAAAAA- 733
consensus_13686#1 TATTAGTTGCTTCATT 351
consensus_13686#2 ----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||