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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13771#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1324 fasta sequence
[AAGTCGATCGATCGATCGTGACGGCGACGGCGCGAGCCACGACCATGGCCAGGACGATGACGATGAGGGTTTCTTCGCTCCTTGTCGCCGTGGTCCTCCTCGCCGCGCTCTCGTTCCAGGCGTGCAGCGGCCATGGCGGCATCAACGACGGCGACGGGCAGGTCGACGCCCCGGCAACGCCTGCGTCGTCGTCCGGCGTGCGGTCCAAGGGGCTGATCGCCGTGAAGGTGTNGTGCCTGGTGATCCTGCTGGT-GTTCACCTTCGCCGGCGGCGT-CTCCCCCTAC-TTC-TACCGGT-GGAACGA-GAGCTTCCTCCTCCTCG-GCACCCAGT-TC-GCCGCCGGCGTCTTCCTCGGCACCGCGCTGATGCACTTCCTCGCCGACTCCACCTCCACCTTCAAGGGCCTCACTACCAACCAGTACCCGTTCTCCTTCATGCTCACCTGCGTCGGCTTCCTGCTCACCATGCTCAGCGACCTCGTCATCGCCGCCGTCGCGCGGAGGAGCGCCGCCGCCGGCGTTAGCGACAACCAGGTCAGTGAGCAGCAGCAGCGGCAGCAAGCCGAGGGGGCGGTGATGAGCCGCAAGGAGGAGGAGGCGGCGGCGGTGGCGCACCCGGCGATGCTGGTGAGGACATCGTCGTTCGAGGACGCCGTGCTGCTCATCGTCGCGCTCTGTTTCCACTCCGTCTTTGAAGGGATCGCCATTGGTGTCTCAGCGAGCAAGAGCGAGGCGTGGAGGAACCTGTGGACGATCGGGCTGCACAAGATATTCGCGGCGGTGGCGATGGGAATCGCGCTGCTCCGGATGATCCCC-AAGCGCCCCTTCCTCATGACCGTCGTCTACTCCCTCGCCTTCGCCGTCTCCAGCCCCGTCGGCGTCGGCATC-GGCATCGCCATCGACGCCACCTCCCAGGGCCGCGCCGCCGACTGGACCTACGCCATCTCCATGGGCCTCGCCACCGGCGTCTTCATCTACGTCGCCATCAACCACCTCATCGCCAAGGGCTACCGCCCCCACCACCCCACCGCCGCCGACAAGCCGCTCTTCAAGTTCCTCGCCGTCCTCCTCGGCGTCGCCGTCATGGCTGTCGTCATGATCTGGGACTGATCCATCCATCCTAGTATTACACTGCTTCATTTCTTCAATTCCTGCGCCCATGTATGTATGCTTAATTTGGCTTGTTTAATTAACTGTATGTACACATGCTGCATGCATGTTCGATTTCTATCACCCCATTCATTAATCGTGGCCGAAACAGTTCATGTCCACTAATGATTGCTGTATCTATCTACATATATCAAACCGTGAATAAAAGTTGTTATAAAAAA]
[+] EMBL AY302058 [AAGTCGATCGATCGATCGTGACGGCGACGGCGCGAGCCACGACCATGGCCAGGACGATGACGATGAGGGTTTCTTCGCTCCTTGTCGCCGTGGTCCTCCTCGCCGCGCTCTCGTTCCAGGCGTGCAGCGGCCATGGCGGCATCAACGACGGCGACGGGCAGGTCGACGCCCCGGCAACGCCTGCGTCGTCGTCCGGCGTGCGGTCCAAGGGGCTGATCGCCGTGAAGGTGTGGTGCCTGGTGATCCTGCTGGT GTTCACCTTCGCCGGCGGCGT CTCCCCCTAC TTC TACCGGT GGAACGA GAGCTTCCTCCTCCTCG GCACCCAGT TC GCCGCCGGCGTCTTCCTCGGCACCGCGCTGATGCACTTCCTCGCCGACTCCACCTCCACCTTCAAGGGCCTCACTACCAACCAGTACCCGTTCTCCTTCATGCTCACCTGCGTCGGCTTCCTGCTCACCATGCTCAGCGACCTCGTCATCGCCGCCGTCGCGCGGAGGAGCGCCGCCGCCGGCGTTAGCGACAACCAGGTCAGTGAGCAGCAGCAGCGGCAGCAAGCCGAGGGGGCGGTGATGAGCCGCAAGGAGGAGGAGGCGGCGGCGGTGGCGCACCCGGCGATGCTGGTGAGGACATCGTCGTTCGAGGACGCCGTGCTGCTCATCGTCGCGCTCTGTTTCCACTCCGTCTTTGAAGGGATCGCCATTGGTGTCTCAGCGAGCAAGAGCGAGGCGTGGAGGAACCTGTGGACGATCGGGCTGCACAAGATATTCGCGGCGGTGGCGATGGGAATCGCGCTGCTCCGGATGATCCCC AAGCGCCCCTTCCTCATGACCGTCGTCTACTCCCTCGCCTTCGCCGTCTCCAGCCCCGTCGGCGTCGGCATC GGCATCGCCATCGACGCCACCTCCCAGGGCCGCGCCGCCGACTGGACCTACGCCATCTCCATGGGCCTCGCCACCGGCGTCTTCATCTACGTCGCCATCAACCACCTCATCGCCAAGGGCTACCGCCCCCACCACCCCACCGCCGCCGACAAGCCGCTCTTCAAGTTCCTCGCCGTCCTCCTCGGCGTCGCCGTCATGGCTGTCGTCATGATCTGGGACTGATCCATCCATCCTAGTATTACACTGCTTCATTTCTTCAATTCCTGCGCCCATGTATGTATGCTTAATTTGGCTTGTTTAATTAACTGTATGTACACATGCTGCATGCATGTTCGATTTCTATCACCCCATTCATTAATCGTGGCCGAAACAGTTCATGTCCACTAATGATTGCTGTATCTATCTACATATATCAAACCGTGAATAAAAGTTGTTATAAAAAA]
[+] EMBL OSR06521A [AAGTCGATCGATCGATCGTGACGGCGACGGCGCGAG CACGACCATGGCCAGGACGATGACGATGAGGGTTTCTTCGCTCCTTGTCGCCGTGGTCCTCCTCGCCGCGCTCTCGTTCCAGGCGTGCAGCGGCCATGGCGGCATCAACGACGGCGACGGGCAGGTCGACGCCCCGGCAACGCCTGCGTCGTCGTCCGGCGTGCGGTCCAAGGGGCTGATCGCCGTGAAGGTGTNGTGCCTGGTGATCCTGCTGGT GTTCACCTTNGCCGGCGG GT CTCCCCCTAC TTC TACCGGT GGAACGA GAGCTTCCTCCTCCTCG GCACCCAGT TC GCCGCCGG GTCTTCCTCGGCACCNCGCTGATGCACTTCCT ]
[+] EMBL AU032374 [ ATCGATCGATCGTGACGGCGACGGCGCGA CCACGACCATGGCCAGGACGATGACGATGAGGGTTTCTTCGCTCCTTGTCGCCGTGGTCCTCCTCGCCGCGCTCTCGTTCCAGGCGTGCAGCGGCCATGGCGGCATCAACGACGGCGACGGGCAGGTCGACGCCCCGGCAACGCCTGCGTCGTCGTCCGGCGTGCGGTCCAAGGGGCTGATCGCCGTGAAGGTGTNGTGCCTGGTGATCCTGCTGGTGGTTCACCTTCGCCGGCGGCGTGCTCCCCCTACTTTCTTACCGGTGGGAACGAGGAGCTTCCTCCTCCTCGTGCACCCAGTNTCTGCCGCCGGCG ]
[+] EMBL AU164595 [ TCGCGNTGCTCCGGATGATCCCC AAGCGCCCCTTCCTCATGACCGTCGTCTACTCCCTCGCCTTCGCCGTCTCCAGCCCCGTCGGCGTCGGCATCGGGCATCGCCATCGACGCCACCTCCCAGGGCCGCGCCGCCGACTGGACCTACGCCATCTCCATGGGCCTCGCCACCGGCGTCTTCATCTACGTCGCCATCAACCACCTCATCGCCAAGGGCTACCGCCCCCACCACCCCACCGCCGCCGACAAGCCGCTCTTCAAGTTCCTCGCCGTCCTCCTCGGCGTCGCCGTCATGGCTGTCGTCATGATCTGGGACTGATCCATCCATCCTAGTATTACACTGCTTCATTTCTTCAATTCCTGCGCCCATGTATGTATGCTTAATTTGGCTTGTTTAATTAACTGTATGTACACATGCTGCATGCATGTTCGATTTCTATCACCCCATTCATTAATCGTGGCCGAAACAGTTCATGTCCACTAATGATTGCTGTATCTATCTACATATATCAAACCGTGAATAAAAGTTGTTATAAAAAA]
[+] EMBL AU032375 [ TGCNCCGGATGATCCCCAAAGCGCCCNTTCCTCATGACCGTNGTCTACTCCCTCGCNTTCGCCGTCTCCAGCCCCGTCGGCGTCGNCATC GGCATCGCCATCGACGCCACNTCCCAGGGCCGCGCCGCCGACTGGACCTACGCCATCTCCATGGGCCTCGCCACCGGCGTCTTCATCTACGTCGCCATCAACCACCTCATCGCCAA GGCTACCGCCCCCACCACCCCACCGCCGCCGACAAGCCGNTNTTCAAGTTCCTCGCCGTCCTCCTCGGCGTCGCCGTCATGGCTGTCGTCATGATCTGGGACTGATCCATCCATCCTAGTATTACACTGCTTCATTTCTTCAATTCCTGCGCCCATGTATGTATGCTTAATTTGGCTTGTTTAATTAACTGTATGTACACATGCTGNATGCATGTTCGATTTCTATCNCCCCATTCATTAATCGTGGCCGAAACAGTTCATGTCCACTAATGATTGCTGTATCTATCTACATATATCAAACCGTGAATAAAAGTTGTTATAAAAA ]
consensusID : consensus_13771#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1314 fasta sequence
[GCGCACCCGTCATCGGTCGAACACCACACCTGCGTCCATGGCGGGAGGCAGGGGAGCCCGCGCCAGCCTCCACCTCCACCTCGCCTGGCTCTGCGCCTTCGCGACCACCGTTTGGGCGCATGGCGGTGGCGGCGGCGGGGGCGATTCTGACGCCGACGCCGACGGCGGCGGCGAGGGGAAGCCGGACCTGCGGGCGCGGGGGCTGGTGGCGGCGAAGCTGTGGTGCTTGGCGGTGGTGTTCGCCGGGACGCTGGCCGGCGGCGTGTCCCCCTACTTCATGCGGTGGAACGATGCGTTCCTGGCGCTGGGCACGCAGTTCGCGGGGGGAGTCTTCCTCGGCACCGCCATGATGCACTTCCTCGCCGACGCCAACGAGACTTTCGCCGACCTCCTCCCCGGCACCGCCTACCCCTTCGCGTTCATGCTCGCCTGCGCCGGCTACGTCCTCACCATGCTCGCCGACTGCGCCATCTCCTTCGTCGTCGCCCGCGGCGGCGGCCGGACCGAACCCGCCGCCGCCGCCGGTGCAGGGCTGGAGGAGGGTAAGCTGAGCAGCACAAATGGCAACGCCTCTGACCCACCAGCAGCTGATGCGGCGGCGCAAGACCACTCCGTGGCGTCGATGCTGCGGAACGCGAGCACGCTCGGCGACAGCGTGCTGCTCATCGCCGCGCTCTGCTTCCACTCCGTCTTCGAGGGCATCGCCATCGGAGTCGCCGAGACGAAGGCTGACGCATGGAAGGCGTTGTGGACGATCAGCCTGCACAAGATCTTCGCGGCCATCGCCATGGGCATCGCGCTGCTCCGGATGCTGCCGGACCGGCCGTTCCTCTCCTGCTTCGGCTACGCCTTCGCCTTCGCCGTCTCCAGCCCCGTCGGCGTCGGCATCGGCATCGTCATCGACGCCACCACGCAGGGCCGGGTGGCCGACTGGATCTTCGCCGTCTCCATGGGCCTCGCCACCGGCATCTTCATCTACGTCTCCATCAACCACCTCCTCTCCAAGGGCTACACCCCGCTGAGGCCCGTCGCCGCCGACACGCCGGCGGGGAGGCTGCTCGCCGTCGTCCTCGGCGTCGCCGTCATCGCCGTCGTCATGATCTGGGACACCTGATGCCGCTCATGATTTCGGACGTTTGTTGGTTCTTGCAGGAATGTGTGTGTGTAGTAAGTTCGTCGTGAAATTAGCATGTGTAAAGTTTGTGCCACTCCAACCAAAGTTTCAGGATTATTTATAGCTTTGAATATATCATCAACGCTGGGGCACCATTGTTTTTGTTTCCATGGATTTTGGGGGTAAGAAATTGACCAAAA]
[+] EMBL AK121551 [GCGCACCCGTCATCGGTCGAACACCACACCTGCGTCCATGGCGGGAGGCAGGGGAGCCCGCGCCAGCCTCCACCTCCACCTCGCCTGGCTCTGCGCCTTCGCGACCACCGTTTGGGCGCATGGCGGTGGCGGCGGCGGGGGCGATTCTGACGCCGACGCCGACGGCGGCGGCGAGGGGAAGCCGGACCTGCGGGCGCGGGGGCTGGTGGCGGCGAAGCTGTGGTGCTTGGCGGTGGTGTTCGCCGGGACGCTGGCCGGCGGCGTGTCCCCCTACTTCATGCGGTGGAACGATGCGTTCCTGGCGCTGGGCACGCAGTTCGCGGGGGGAGTCTTCCTCGGCACCGCCATGATGCACTTCCTCGCCGACGCCAACGAGACTTTCGCCGACCTCCTCCCCGGCACCGCCTACCCCTTCGCGTTCATGCTCGCCTGCGCCGGCTACGTCCTCACCATGCTCGCCGACTGCGCCATCTCCTTCGTCGTCGCCCGCGGCGGCGGCCGGACCGAACCCGCCGCCGCCGCCGGTGCAGGGCTGGAGGAGGGTAAGCTGAGCAGCACAAATGGCAACGCCTCTGACCCACCAGCAGCTGATGCGGCGGCGCAAGACCACTCCGTGGCGTCGATGCTGCGGAACGCGAGCACGCTCGGCGACAGCGTGCTGCTCATCGCCGCGCTCTGCTTCCACTCCGTCTTCGAGGGCATCGCCATCGGAGTCGCCGAGACGAAGGCTGACGCATGGAAGGCGTTGTGGACGATCAGCCTGCACAAGATCTTCGCGGCCATCGCCATGGGCATCGCGCTGCTCCGGATGCTGCCGGACCGGCCGTTCCTCTCCTGCTTCGGCTACGCCTTCGCCTTCGCCGTCTCCAGCCCCGTCGGCGTCGGCATCGGCATCGTCATCGACGCCACCACGCAGGGCCGGGTGGCCGACTGGATCTTCGCCGTCTCCATGGGCCTCGCCACCGGCATCTTCATCTACGTCTCCATCAACCACCTCCTCTCCAAGGGCTACACCCCGCTGAGGCCCGTCGCCGCCGACACGCCGGCGGGGAGGCTGCTCGCCGTCGTCCTCGGCGTCGCCGTCATCGCCGTCGTCATGATCTGGGACACCTGATGCCGCTCATGATTTCGGACGTTTGTTGGTTCTTGCAGGAATGTGTGTGTGTAGTAAGTTCGTCGTGAAATTAGCATGTGTAAAGTTTGTGCCACTCCAACCAAAGTTTCAGGATTATTTATAGCTTTGAATATATCATCAACGCTGGGGCACCATTGTTTTTGTTTCCATGGATTTTGGGGGTAAGAAATTGACCAAAA]
consensusID : consensus_13771#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1279 fasta sequence
[GTCGAACACCACACCTGCGTCCATGGCGGGAGGCAGGGGAGCCCGCGCCAGCCTCCACCTCCACCTCGCCTGGCTCTGCGCCTTCGCGACCACCGCGTGGGCGC-ATGGCGGTGGCGGCGGCGGGGGCGATTCTGACGCCGACGCCGACGGCGGCGG-CGAGGGGAAGCCGGACCTGCGGGCGCGGGGGCTGGTGGCGGCGAAGCTGTGGTGCTTGGCGGTGGTGTTCGCCGGGACGCTGGCCGGCGGCGTGTCCCCCTACTTCATGCGGTGGAACGATGCGTTCCTGGCGCTGGGCACGCAGTTCGCGGGGGGAGTCTTCCTCGGCACCGCCATGATGCACTTCCTCGCCGACGCCAACGAGACTTTCGCCGACCTCCTCCCCGGCACCGCCTACCCCTTCGCGTTCATGCTCGCCTGCGCCGGCTACGTCCTCACCATGCTCGCCGACTGCGCCATCTCCTTCGTCGTCGCCCGCGGCGGCGGCCGGACCGAACCCGCCGCCGCCGCCGGTGCAGGGCTGGAGGAGGGTAAGCTGAGCAGCACAAATGGCAACGCCTCTGACCCACCAGCAGCTGATGCGGCGGCGCAAGACCACTCCGTGGCGTCGATGCTGCGGAACGCGAGCACGCTCGGCGACAGCGTGCTGCTCATCGCCGCGCTCTGCTTCCAC-TCCGTCTT--CGA-GGGC-ATCGCCATCGG--AGTCGCCGAGACGAAGGCT-GACGCATGGAAGGCGC-TGTGGACGATCAGCCTGCAC-AAGATCTTCGCGGCCATCG-CCA-TGGGCATCGCGCTGCTCCGGATGCTGCCGGACCGGCCGTTCCTCTCCTGCTTCGGCTAC-GCCTTCGCCTTCGCCGTCTCCAGCCCCGTCGGCGTCGGCATCGGCATCGTCATCGACGCCACCACGCAGGGCCGGGTGGCCGA-CTGGATCTTCGCCGTCTCCATGGGCCTCGCCACCGGCATCTTCATCTACGTCTCCATC-AACCACCTCCTCTCCAAGGGCTACACCCCGCTGAGGCCCGTCGCCGCCGACACGCCGGCGGGGAGGCTGCTCGCCGTCGTCCTCGGCGTCGCCGTCATCGCCGTCGTCAT-GATCTGGGACACCTGATGCCGCTCATGATTTCGGACGTTTGTTGGTTCTTG-CAGGAATGTGTGTGTGTAGTAAGTTCGTCGTGAAATTAGCATGTGTAAAGT-TTGTGCCACTCCAACCAAAGTTTCA-GGATTATTTATAGCTTTGAATATATCATCAACGCTGGGGC-CCCAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AY302059 [GTCGAACACCACACCTGCGTCCATGGCGGGAGGCAGGGGAGCCCGCGCCAGCCTCCACCTCCACCTCGCCTGGCTCTGCGCCTTCGCGACCACCGCGTGGGCGC ATGGCGGTGGCGGCGGCGGGGGCGATTCTGACGCCGACGCCGACGGCGGCGG CGAGGGGAAGCCGGACCTGCGGGCGCGGGGGCTGGTGGCGGCGAAGCTGTGGTGCTTGGCGGTGGTGTTCGCCGGGACGCTGGCCGGCGGCGTGTCCCCCTACTTCATGCGGTGGAACGATGCGTTCCTGGCGCTGGGCACGCAGTTCGCGGGGGGAGTCTTCCTCGGCACCGCCATGATGCACTTCCTCGCCGACGCCAACGAGACTTTCGCCGACCTCCTCCCCGGCACCGCCTACCCCTTCGCGTTCATGCTCGCCTGCGCCGGCTACGTCCTCACCATGCTCGCCGACTGCGCCATCTCCTTCGTCGTCGCCCGCGGCGGCGGCCGGACCGAACCCGCCGCCGCCGCCGGTGCAGGGCTGGAGGAGGGTAAGCTGAGCAGCACAAATGGCAACGCCTCTGACCCACCAGCAGCTGATGCGGCGGCGCAAGACCACTCCGTGGCGTCGATGCTGCGGAACGCGAGCACGCTCGGCGACAGCGTGCTGCTCATCGCCGCGCTCTGCTTCCAC TCCGTCTT CGA GGGC ATCGCCATCGG AGTCGCCGAGACGAAGGCT GACGCATGGAAGGCGC TGTGGACGATCAGCCTGCAC AAGATCTTCGCGGCCATCG CCA TGGGCATCGCGCTGCTCCGGATGCTGCCGGACCGGCCGTTCCTCTCCTGCTTCGGCTAC GCCTTCGCCTTCGCCGTCTCCAGCCCCGTCGGCGTCGGCATCGGCATCGTCATCGACGCCACCACGCAGGGCCGGGTGGCCGA CTGGATCTTCGCCGTCTCCATGGGCCTCGCCACCGGCATCTTCATCTACGTCTCCATC AACCACCTCCTCTCCAAGGGCTACACCCCGCTGAGGCCCGTCGCCGCCGACACGCCGGCGGGGAGGCTGCTCGCCGTCGTCCTCGGCGTCGCCGTCATCGCCGTCGTCAT GATTTGGGACACCTAATGCCGCTCATGATTTCGGACGTTTGTTGGTTCTTG CAGGAATGTGTGTGTGTAGTAAGTTCGTCGTGAAATTAGCATGTGTAAAGT TTGTGCCACTCCAACCAAAGTTTCA GGATTATTTATAGCTTTGAATATATCATCAACGCTGGGGC CCCAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CB641993 [GTCGAACACCACACCTGCGTCCATGGCGGGAGGCAGGGGAGCCCGCGCCAGCCTCCACCTCCACCTCGCCTGGCTCTGCGCCTTCGCGACCACCGCGTGGGCGC ATGGCGGTGGCGGCGGCGGGGGCGATTCTGACGCCGACGCCGACGGCGGCGG CGAGGGGAAGCCGGACCTGCGGGCGCGGGGGCTGGTGGCGGCGAAGCTGTGGTGCTTGGCGGTGGTGTTCGCCGGGACGCTGGCCGGCGGCGTGTCCCCCTACTTCATGCGGTGGAACGATGCGTTCCTGGCGCTGGGCACGCAGTTCGCGGGGGGAGTCTTCCTCGGCACCGCCATGATGCACTTCCTCGCCGACGCCAACGAGACTTTCGCCGACCTCCTCCCCGGCACCGCCTACCCCTTCGCGTTCATGCTCGCCTGCGCCGGCTACGTCCTCACCATGCTCGCCGACTGCGCCATCTCCTTCGTCGTCGCCCGCGGCGGCGGCCGGACCGAACCCGCCGCCGCCGCCGGTGCAGGGCTGGAGGAGGGTAAGCTGAGCAGCACAAATGGCAACGCCTCTGACCCACCAGCAGCTGATGCGGCGGCGCAAGACCACTCCGTGGCGTCGATGCTGCGGAACGCGAGCACGCTCGGCGACAGCGTGCTGCTCATCGCCGCGCTCTGCTTCCAC TCCGTCTT CGA GG ]
[+] EMBL OSS13705A [GTCGAACACCACACCTGCGTCCATGGCGGGAGGCAGGGGAGCCCGCGCCA NCTCCACCTCCACCTCGCCTGGCTCTGCGCCTTCGCGACCACCGCGTGGGCGCAATGGCGGTGGCGGCGGCGGGGGCGATTCTGACGNCGACGCCGAC GNGGCGGATGNGNGGAAGCCGGACCTGCGGGCGCGNGGGCTGGTGGCGGCGAAG TGTGGTGCTTGGCGGTGGTGTTCGCCGGGACGCTGGCCGGCGGCGTGTCCCCCTACTTCATGCGGTGGAACGATGCGTTCCTGGCGCTGGG ]
[+] EMBL BQ907959 [ tTCTGTTCCCACTTCCNTCTTTGCGATGGGCAATCGCCATCGGGAATTCCCCGAGACGAA GCTAGACGCATGGAAGGCGCATGTGGACGATCAGCCTGCACAAAGATCTTCGCGCCCATCG CCA TGGGCATCGCGCTGCTCCGGATGCTGCCGGACCGGCCGTTCCTCTCCTGCTTCGGCTACGGCCTTCGCCTTCGCCGTCTCCAGCCCCGTCGGCGTCGGCATCGGCATCGTCATCGACGCCACCACGCA GGCCGGGT GCCGATCTGGATCTTCGCCGTCTCCATGGGCCTCGCCACCGGCATCTTCATCTACGTCTCCATC AACCACCTCCTCTCCAAGGGCTACACCCCGCTGAGGCCCGTCGCCGCCGACACGCCGGCGGGGAGGCTGCTCGCCGTCGTCCTCGGCGTCGCCGTCATCGCCGTCGTCAT GATCTGGGACACCTGATTCCGCTCATGATTTCGGACGTTTGTTGGTTCTTGCCAGGAATGTGTGTGTGTAGTAAGTTCGTCGTGAAATTAGCATGTGTAAAGTCTTGTGCCACTCCAACCAAAGTTTCACGGATTATTTATAGCTTTGAATATATCATCAAaaaa ]
[+] EMBL CF325501 [ gCTT CGA GGGC ATCGCCATCGG AGTCGCCGAGACGAAGGCT GACGCATGGAAGGCGC TGTGGACGATCAGCCTGCAC AAGATCTTCGCGGCCATCG CCA TGGGCATCGCGCTGCTCCGGATGCTGCCGGACCGGCCGTTCCTCTCCTGCTTCGGCTAC GCCTTCGCCTTCGCCGTCTCCAGCCCCGTCGGCGTCGGCATCGGCATCGTCATCGACGCCACCACGCAGGGCCGGGTGGCCGA CTGGATCTTCGCCGTCTCCATGGGCCTCGCCACCGGCATCTTCATCTACGTCTCCATC AACCACCTCCTCTCCAAGGGCTACACCCCGCTGAGGCCCGTC ]
[+] EMBL BQ909168 [ gacTCAGCCTGCAC AAGATCTTCGCGGCCATCGCCCACTGGGCATCGCGCTGCTCCGGATGCTGCCGGACCGGCCGTTCCTCTCCTGCTTCGGCTAC GCCTTCGCCTTCGCCGTCTCCAGCCCCGTCGGCGTCGGCATCGGCATCGTCATCGACGCCACCACGCAGGGCCGGGTGGCCGA CTGGATCTTCGCCGTCTCCATGGGCCTCGCCACCGGCATCTTCATCTACGTCTCCATCTAACCACCTCCTCTCCAAGGGCTACACCCCGCTGAGGCCCGTCGCCGCCGACACGCCGGCGGGGAGGCTGCTCGCCGTCGTCCTCGGCGTCGCCGTCATCGCCGTCGTCATCGATCTGGGACACCTGATNCCGCTCATGATTTCGGACGTTTGTTGGTTCTTG CAGGAATGTGTGTGTGTAGTAAGTTCGTCGTGAAATTAGCATGTGTAAAGT TTGTGCCACTCCAACC AAGTTTCA GGATTATTTATAGCTTTGAATATATCATCAACGCTGGGGCACCCAAAAAA ]
consensusID : consensus_13771#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence
[NGGAAANAAANCNCCNCNANCNTNACNTNANNNANNCTAAAAACAACNNNACNCTATNNCNNACATNTNGCGGCNAAAAAACANGTGNNANTTTNAAACAAANNTGACAANTTTTAACCGTNNTCNNCTTTNAGNACCNAGAATCCAAAAAANTCCTTNANCCNNNAAAAACTTNAAAAATTNGNGCCATCCCNGGGAAANNCCTTTNCGNATTNTCCGGACCGNCATTCNNTATNCTTGTNGGTAANCTTACCTTNGCCGTTTACAACCCCTTTCGGGTTCGGANCGGATNTTAANAGACGCCANCCACGCAGGCCGGNTGCCGANTGGANTTTCNCCGTNTCCATGGCCTTCGCNACGGGCATNTTAATNNACGTNTCCATCAACCCACTTCTTNTCCAAGGGTTACACCCCCGNTGAGNCCCCGTCGCCGCCGACACGCCGGCGGGNAGGCTGCTCGCCGTCGTCCCTTNGCGTCGCCGTCATCGCCGTCGTCATGATCTGGGACACCTGATGCCGCTCATGATTTCGGACGTTTGTTGGTTCTTGCAGGAATGTGTGTGTGTAGTAAGTTCGTCGTGAAATTAGCATGTGTAAAGTTTGTGCCANTCCAACCAAAGTTTCAGGATTATTTATAGCTTTGAATATATCATCAACGCTGGGGCACCAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU032700 [NGGAAANAAANCNCCNCNANCNTNACNTNANNNANNCTAAAAACAACNNNACNCTATNNCNNACATNTNGCGGCNAAAAAACANGTGNNANTTTNAAACAAANNTGACAANTTTTAACCGTNNTCNNCTTTNAGNACCNAGAATCCAAAAAANTCCTTNANCCNNNAAAAACTTNAAAAATTNGNGCCATCCCNGGGAAANNCCTTTNCGNATTNTCCGGACCGNCATTCNNTATNCTTGTNGGTAANCTTACCTTNGCCGTTTACAACCCCTTTCGGGTTCGGANCGGATNTTAANAGACGCCANCCACGCAGGCCGGNTGCCGANTGGANTTTCNCCGTNTCCATGGCCTTCGCNACGGGCATNTTAATNNACGTNTCCATCAACCCACTTCTTNTCCAAGGGTTACACCCCCGNTGAGNCCCCGTCGCCGCCGACACGCCGGCGGGNAGGCTGCTCGCCGTCGTCCCTTNGCGTCGCCGTCATCGCCGTCGTCATGATCTGGGACACCTGATGCCGCTCATGATTTCGGACGTTTGTTGGTTCTTGCAGGAATGTGTGTGTGTAGTAAGTTCGTCGTGAAATTAGCATGTGTAAAGTTTGTGCCANTCCAACCAAAGTTTCAGGATTATTTATAGCTTTGAATATATCATCAACGCTGGGGCACCAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_13771#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 370 fasta sequence
[GGTGCCGACTGGATCTTCCCGTCTCCAGTGGCCTCGCCACCGGCATCTTCATCTACGTCGTCCAATCGACCAGCCTCCTCTCCAAGGCTACACCCCGCTGAGGCCCGTCGCCGCCGACACGCCGCGGGGAGCTGCTCGCCGTCGTCCTCGGCGTCGCCGTCATCGCCGTCGTCATGATCTGGGACACCCTGATGCCGCTCATGATTTCGGACGTTTGTTGGTTCTTGCAGGAATGTGTGTGTGTAGTAAGTTCGTCGTGAAATTAGCATGTGTAAAGTTTGTGCCACTCCAACCAAAGTTTCAGGATTATTTATAGCTTTGAATATATCATCAACGCTGGGGCACCATTGTTTTTGTTTCAAAAAAAAAA]
[+] EMBL BI812100 [GGTGCCGACTGGATCTTCCCGTCTCCAGTGGCCTCGCCACCGGCATCTTCATCTACGTCGTCCAATCGACCAGCCTCCTCTCCAAGGCTACACCCCGCTGAGGCCCGTCGCCGCCGACACGCCGCGGGGAGCTGCTCGCCGTCGTCCTCGGCGTCGCCGTCATCGCCGTCGTCATGATCTGGGACACCCTGATGCCGCTCATGATTTCGGACGTTTGTTGGTTCTTGCAGGAATGTGTGTGTGTAGTAAGTTCGTCGTGAAATTAGCATGTGTAAAGTTTGTGCCACTCCAACCAAAGTTTCAGGATTATTTATAGCTTTGAATATATCATCAACGCTGGGGCACCATTGTTTTTGTTTCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13771#3 ------------------------------------------------------------
consensus_13771#4 ------------------------------------------------------------
consensus_13771#1 ----------GCGCACCCGTCATCGGTCGAACACCACACCTGCGTCCATGGCGGGAGGCA 50
consensus_13771#2 -------------------------GTCGAACACCACACCTGCGTCCATGGCGGGAGGCA 35
consensus_13771#0 AAGTCGATCGATCGATCGTGACGGCGACGGCGCGAGCCACGACCATGGCCAGGACGATGA 60
consensus_13771#3 ------------------------------------------------------------
consensus_13771#4 ------------------------------------------------------------
consensus_13771#1 GGGGAGCCCGCGCCAGCCTCCACCTCCACCTCGCCTGGCTCTGCGCCTTCGCGACCACCG 110
consensus_13771#2 GGGGAGCCCGCGCCAGCCTCCACCTCCACCTCGCCTGGCTCTGCGCCTTCGCGACCACCG 95
consensus_13771#0 CGATGAGGGTTTCTTCGCTCCTTGTCGCCGTGGTCCTCCTCGCCGCGCTCTCGTTCCAGG 120
consensus_13771#3 ------------------------------------------------------------
consensus_13771#4 ------------------------------------------------------------
consensus_13771#1 TTTGGGCGCATGGCGGTGGCGGCGGCGGGGGCGATTCTGACGCCGACGCCGACGGCGGCG 170
consensus_13771#2 CGTGGGCGCATGGCGGTGGCGGCGGCGGGGGCGATTCTGACGCCGACGCCGACGGCGGCG 155
consensus_13771#0 CGTGCAGCGGCCATGGCGGCATCAACGACGGCGACGGGCAGGTCGACGCCCCGGCAACGC 180
consensus_13771#3 ------------------------------------------------------------
consensus_13771#4 ------------------------------------------------------------
consensus_13771#1 GCGAGGGGAAGCCGGACCTGCGGGCGCGGGGGCTGGTGGCGGCGAAGCTGTGGTGCTTGG 230
consensus_13771#2 GCGAGGGGAAGCCGGACCTGCGGGCGCGGGGGCTGGTGGCGGCGAAGCTGTGGTGCTTGG 215
consensus_13771#0 CTGCGTCGTCGTCCGGCGTGCGGTCCAAGGGGCTGATCGCCGTGAAGGTGTNGTGCCTGG 240
consensus_13771#3 ------------------------------------------------------------
consensus_13771#4 ------------------------------------------------------------
consensus_13771#1 CGGTGGTGTTCGCCGGGACGCTGGCCGGCGGCGTGTCCCCCTACTTCATGCGGTGGAACG 290
consensus_13771#2 CGGTGGTGTTCGCCGGGACGCTGGCCGGCGGCGTGTCCCCCTACTTCATGCGGTGGAACG 275
consensus_13771#0 TGATCCTGCTGGTGTTCACCTTCGCCGGCGGCGTCTCCCCCTACTTCTACCGGTGGAACG 300
consensus_13771#3 ------------------------------------------------------------
consensus_13771#4 ------------------------------------------------------------
consensus_13771#1 ATGCGTTCCTGGCGCTGGGCACGCAGTTCGCGGGGGGAGTCTTCCTCGGCACCGCCATGA 350
consensus_13771#2 ATGCGTTCCTGGCGCTGGGCACGCAGTTCGCGGGGGGAGTCTTCCTCGGCACCGCCATGA 335
consensus_13771#0 AGAGCTTCCTCCTCCTCGGCACCCAGTTCGCCGCCGGCGTCTTCCTCGGCACCGCGCTGA 360
consensus_13771#3 ------------------------------------------------------------
consensus_13771#4 ------------------------------------------------------------
consensus_13771#1 TGCACTTCCTCGCCGACGCCAACGAGACTTTCGCCGACCTCCTCCCCGGCACCGCCTACC 410
consensus_13771#2 TGCACTTCCTCGCCGACGCCAACGAGACTTTCGCCGACCTCCTCCCCGGCACCGCCTACC 395
consensus_13771#0 TGCACTTCCTCGCCGACTCCACCTCCACCTTCAAGGGCCTCACTACCAACCAG---TACC 417
consensus_13771#3 ------------------------------------------------------------
consensus_13771#4 ------------------------------------------------------------
consensus_13771#1 CCTTCGCGTTCATGCTCGCCTGCGCCGGCTACGTCCTCACCATGCTCGCCGACTGCGCCA 470
consensus_13771#2 CCTTCGCGTTCATGCTCGCCTGCGCCGGCTACGTCCTCACCATGCTCGCCGACTGCGCCA 455
consensus_13771#0 CGTTCTCCTTCATGCTCACCTGCGTCGGCTTCCTGCTCACCATGCTCAGCGACCTCGTCA 477
consensus_13771#3 ------------------------------------------------------------
consensus_13771#4 ------------------------------------------------------------
consensus_13771#1 TCTCCTTCGTCGTCGCCCGCGGCGGCGGCCGGACCGAACCCGCCGCCGCCGCCGGTGCAG 530
consensus_13771#2 TCTCCTTCGTCGTCGCCCGCGGCGGCGGCCGGACCGAACCCGCCGCCGCCGCCGGTGCAG 515
consensus_13771#0 TCGCCGCCGTCGCG---------------CGGAGGAGCGCCGCCGCCGGCGTTAGCGACA 522
consensus_13771#3 ------------------------------------------------------------
consensus_13771#4 ------------------------------------------------------------
consensus_13771#1 GGCTGGAGGAGGGTAAGCTGAGCAGCACAAATGGCAACGCCTCTGACCCACCAGCAGCTG 590
consensus_13771#2 GGCTGGAGGAGGGTAAGCTGAGCAGCACAAATGGCAACGCCTCTGACCCACCAGCAGCTG 575
consensus_13771#0 ACCAGGTCAGTGAGCAGCAGCAGCGGCAGCAAGCCGAGGGGGCGGTGATGAGCCGCAAGG 582
consensus_13771#3 --------NGGAAANAAANCNCCNCNANCNTNACNTNANNNANNCTAAAAACAACNNNAC 52
consensus_13771#4 ------------------------------------------------------------
consensus_13771#1 ATGCGGCGGCGCAAGACCACTCCGTGGCGTCGATGCTGCGGAACGCGAGCACGCTCGGCG 650
consensus_13771#2 ATGCGGCGGCGCAAGACCACTCCGTGGCGTCGATGCTGCGGAACGCGAGCACGCTCGGCG 635
consensus_13771#0 AGGAGGAGGCGGCGGCGGTGGCGCACCCGGCGATGCTGGTGAGGACATCGTCGTTCGAGG 642
consensus_13771#3 NCTATNNCNNACATNTNGCGGCNAAAAAACANGTGNNANTTTNAAACAAANNTGACAANT 112
consensus_13771#4 ------------------------------------------------------------
consensus_13771#1 ACAGCGTGCTGCTCATCGCCGCGCTCTGCTTCCACTCCGTCTTCGAGGGCATCGCCATCG 710
consensus_13771#2 ACAGCGTGCTGCTCATCGCCGCGCTCTGCTTCCACTCCGTCTTCGAGGGCATCGCCATCG 695
consensus_13771#0 ACGCCGTGCTGCTCATCGTCGCGCTCTGTTTCCACTCCGTCTTTGAAGGGATCGCCATTG 702
consensus_13771#3 TTTAACCGTNNTCNNCTTTNAGNACCNAGAATCCAAAAAANTCCTTNANCCNNNA-AAAA 171
consensus_13771#4 ------------------------------------------------------------
consensus_13771#1 GAGTCGCCGAGACGAAGGCTGACGCATGGAAGGCGTTGTGGACGATCAGCCTGCACAAGA 770
consensus_13771#2 GAGTCGCCGAGACGAAGGCTGACGCATGGAAGGCGCTGTGGACGATCAGCCTGCACAAGA 755
consensus_13771#0 GTGTCTCAGCGAGCAAGAGCGAGGCGTGGAGGAACCTGTGGACGATCGGGCTGCACAAGA 762
consensus_13771#3 CTTNAAAAATTNGNGCCATCCCNGGGAAANNCCTTTNCGNATTNTCCGGACCGNCATTCN 231
consensus_13771#4 ------------------------------------------------------------
consensus_13771#1 TCTTCGCGGCCATCGCCATGGGCATCGCGCTGCTCCGGATGCTGCCGGACCGGCCGTTCC 830
consensus_13771#2 TCTTCGCGGCCATCGCCATGGGCATCGCGCTGCTCCGGATGCTGCCGGACCGGCCGTTCC 815
consensus_13771#0 TATTCGCGGCGGTGGCGATGGGAATCGCGCTGCTCCGGATGATCCCCAAGCGCCCCTTCC 822
consensus_13771#3 NTATNCTTGTNGGTAAN---CTTACCTTNGCCGTTTACAACCCCTTTCGGGTTCGGANCG 288
consensus_13771#4 ------------------------------------------------------------
consensus_13771#1 TCTCCTGCTTCGGCTACGCCTTCGCCTTCGCCGTCTCCAGCCCCGTCGGCGTCGGCATCG 890
consensus_13771#2 TCTCCTGCTTCGGCTACGCCTTCGCCTTCGCCGTCTCCAGCCCCGTCGGCGTCGGCATCG 875
consensus_13771#0 TCATGACCGTCGTCTACTCCCTCGCCTTCGCCGTCTCCAGCCCCGTCGGCGTCGGCATCG 882
consensus_13771#3 G-ATNTTAANAGACGCCANCCACGCAGGCCGGNTG-CCGANTGGANTTTCNCCGTNTCCA 346
consensus_13771#4 -------------------------------GGTG-CCGACTGGATCTTCCC-GTCTCCA 27
consensus_13771#1 GCATCGTCATCGACGCCACCACGCAGGGCCGGGTGGCCGACTGGATCTTCGCCGTCTCCA 950
consensus_13771#2 GCATCGTCATCGACGCCACCACGCAGGGCCGGGTGGCCGACTGGATCTTCGCCGTCTCCA 935
consensus_13771#0 GCATCGCCATCGACGCCACCTCCCAGGGCCGCGCCGCCGACTGGACCTACGCCATCTCCA 942
**** **** * * * * ****
consensus_13771#3 TGGCCTTCGCNACGGGCATNTTAATNNACGTNTCC--ATCAACCCACTTCTTNTCCAAGG 404
consensus_13771#4 GTGGCCTCGCCACCGGCATCTTCATCTACGTCGTCCAATCGACCAGCCTCCTCTCCAAGG 87
consensus_13771#1 TGGGCCTCGCCACCGGCATCTTCATCTACGTCTCC--ATCAACC-ACCTCCTCTCCAAGG 1007
consensus_13771#2 TGGGCCTCGCCACCGGCATCTTCATCTACGTCTCC--ATCAACC-ACCTCCTCTCCAAGG 992
consensus_13771#0 TGGGCCTCGCCACCGGCGTCTTCATCTACGTCGCC--ATCAACC-ACCTCATCGCCAAGG 999
* * **** ** *** * ** ** **** * *** *** * ** * ******
consensus_13771#3 GTTACACCCCCGNTGAGNCCCCGTCGCCGCCGACACGCCGGCGGGNAGGCTGCTCGCCGT 464
consensus_13771#4 -CTACACCCC-GCTGAGGCCC-GTCGCCGCCGACACGCCG-CGGGGAG-CTGCTCGCCGT 142
consensus_13771#1 GCTACACCCC-GCTGAGGCCC-GTCGCCGCCGACACGCCGGCGGGGAGGCTGCTCGCCGT 1065
consensus_13771#2 GCTACACCCC-GCTGAGGCCC-GTCGCCGCCGACACGCCGGCGGGGAGGCTGCTCGCCGT 1050
consensus_13771#0 GCTACCGCCC--CCACCACCCCACCGCCGCCGACAAGCCGCTCTTCAAGTTCCTCGCCGT 1057
*** *** *** *********** **** * * ********
consensus_13771#3 CGTCCCTTNGCGTCGCCGTCATCGCCGTCGTCATGATCTGGGACACC-TGATGCCGCTCA 523
consensus_13771#4 CGTCC-TCGGCGTCGCCGTCATCGCCGTCGTCATGATCTGGGACACCCTGATGCCGCTCA 201
consensus_13771#1 CGTCC-TCGGCGTCGCCGTCATCGCCGTCGTCATGATCTGGGACACC-TGATGCCGCTCA 1123
consensus_13771#2 CGTCC-TCGGCGTCGCCGTCATCGCCGTCGTCATGATCTGGGACACC-TGATGCCGCTCA 1108
consensus_13771#0 CCTCC-TCGGCGTCGCCGTCATGGCTGTCGTCATGATCTGGGACTGATCCATCCATCCTA 1116
* *** * ************* ** ****************** ** * * *
consensus_13771#3 TGATTTCGGACGTTTGTT-----GGTTCTTGCAGGAATGTGTGTGTGTAGTAAGTTCG-T 577
consensus_13771#4 TGATTTCGGACGTTTGTT-----GGTTCTTGCAGGAATGTGTGTGTGTAGTAAGTTCG-T 255
consensus_13771#1 TGATTTCGGACGTTTGTT-----GGTTCTTGCAGGAATGTGTGTGTGTAGTAAGTTCG-T 1177
consensus_13771#2 TGATTTCGGACGTTTGTT-----GGTTCTTGCAGGAATGTGTGTGTGTAGTAAGTTCG-T 1162
consensus_13771#0 GTATTACACTGCTTCATTTCTTCAATTCCTGCGCCCATGTATGTATGCT-TAATTTGGCT 1175
*** * ** ** *** *** **** *** ** *** ** * *
consensus_13771#3 CGTGAAATTAGC---ATGTGTAAAGTTTG--TGCCANTCCAACCAAAGTTTCAGGATT-A 631
consensus_13771#4 CGTGAAATTAGC---ATGTGTAAAGTTTG--TGCCACTCCAACCAAAGTTTCAGGATT-A 309
consensus_13771#1 CGTGAAATTAGC---ATGTGTAAAGTTTG--TGCCACTCCAACCAAAGTTTCAGGATT-A 1231
consensus_13771#2 CGTGAAATTAGC---ATGTGTAAAGTTTG--TGCCACTCCAACCAAAGTTTCAGGATT-A 1216
consensus_13771#0 TGTTTAATTAACTGTATGTACACATGCTGCATGCATGTTCGATTTCTATCACCCCATTCA 1235
** ***** * **** * * ** *** * * * * * *** *
consensus_13771#3 TTTATAGC--TTTGAATATATCATCAACGCTGGGGCACCAAAAAAAAAAAAAAAAAAAAA 689
consensus_13771#4 TTTATAGC--TTTGAATATATCATCAACGCTGGGGCACCATTGTTTTTGTTTCAAAAAAA 367
consensus_13771#1 TTTATAGC--TTTGAATATATCATCAACGCTGGGGCACCATTGTTTTTGTTTCCATGGAT 1289
consensus_13771#2 TTTATAGC--TTTGAATATATCATCAACGCTGGGGCCCCAAAAAAAAAAAAAAAAAAAAA 1274
consensus_13771#0 TTAATCGTGGCCGAAACAGTTCATGTCCACTAATG-ATTGCTGTATCTATCTACATATAT 1294
** ** * ** * **** * ** * * *
consensus_13771#3 AAAAA------------------------- 694
consensus_13771#4 AAA--------------------------- 370
consensus_13771#1 TTTGGGGGTAAGAAATTGACCAAAA----- 1314
consensus_13771#2 AAAAA------------------------- 1279
consensus_13771#0 CAAACCGTGAATAAAAGTTGTTATAAAAAA 1324
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||