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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13795#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1413 fasta sequence
[ACCCGACATTCCCTCGTGCTCTTCCCATCCGCGACTCCAAAATTCCCGTCCGCTCCTCCAGGCAAGCAAGCACGGAAACCCACTCATCACTCACTCACTCCCCCAAACCCAAACCCTAGCTACTACTAGCTCCCCGCTCCGGATCAAGCGCATCTCGAGTTCGAGCGAGCATTCCCCTCTTCGGTTCGAGTGGGTTGGCTGGCGGCAGATGGGCTCCGACTCCAAGGAGTTGCTCGGGATCGAGCCGCTCGAGCTCCGGTTCTCCTTCGAGACGAAGAAGCAGATCTCATGCTCCATGCAGCTGACGAACAGAACAGATGACTACATCGCCTTTAAGGTCAAGACAACTAGCCCAAAGAAGTACTGCGTCAGGCCGAACAGTGGCATTGTGCCGCCACGGTCCACCAGCGATGTCATCGTAACAATGCAAGCCCAACGGGAGGCACCAGCAGACATGCAGTGCAAAGACAAGTTTCTAGTGCAGAGCGTTGTGGTGACTGAAGGCACAACAACCAAGGATGTCACTGGAGAGATGTTTAACAAAGGATCAGGTAATGTGGTGGATGAGAGGAAGTTGAAGGTTGTCTATGTCCAACCACCACGACCACCATCCCCCGTGCGTGAGGGATCTGAAGAAGGCTCGTCTCCTCGGGCTTCATTATCAGAAGGGGGCAACTTGAATTATCAAGATACAACTCGGGAATCTGATGAGCCACCATTGCTATCTGCTACAAGAGCACACAAGGATGCAGAAGATGTAACATCTGATTCTGAGACATCTGCTTTGATTTCAAGATTGACAGAAGAAAGAAACTCTGCTATTCAGCAGAACAATAAGCTTCTCGAGGAGATGGACCTTGTGAGGAGGGAAATTAGCAAGCAGAATGGTGGTTTCCCTTTTGTGTTCGTGGTGGTCGTTGCTCTTCTGGGAATTCTACTGGGGTATATCATGAAGAGATAGATGAGCTTGTCTAGTTCTGTTTCGTTAGGCCTTTTCTTTCTTAAGAATTGATTTGTTGTCTGCATTTTCTGATGCGTTTGCTCACATGTTCTACACTACCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCTGTAATTGCGTGCTTCAGATTGGCTGGCTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCTTGGAGAGCTTATGCAGTTAAGAAGTTTGCGCATCGGTATCTGTTGGTACAACTGTAAACTTGCTTTCAATTTA-CTAGTGTCCTGATTGCCTGATTTTGATACGTTTGTCCTATGTATTGCAAAGACAGAAGACGTGGTTATGTTCAGTTATGTTTCGGAGCAAATGAGTTTGGTTCAATAGCTAACTTTTAAAATAATCAGAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK071369 [ACCCGACATTCCCTCGTGCTCTTCCCATCCGCGACTCCAAAATTCCCGTCCGCTCCTCCAGGCAAGCAAGCACGGAAACCCACTCATCACTCACTCACTCCCCCAAACCCAAACCCTAGCTACTACTAGCTCCCCGCTCCGGATCAAGCGCATCTCGAGTTCGAGCGAGCATTCCCCTCTTCGGTTCGAGTGGGTTGGCTGGCGGCAGATGGGCTCCGACTCCAAGGAGTTGCTCGGGATCGAGCCGCTCGAGCTCCGGTTCTCCTTCGAGACGAAGAAGCAGATCTCATGCTCCATGCAGCTGACGAACAGAACAGATGACTACATCGCCTTTAAGGTCAAGACAACTAGCCCAAAGAAGTACTGCGTCAGGCCGAACAGTGGCATTGTGCCGCCACGGTCCACCAGCGATGTCATCGTAACAATGCAAGCCCAACGGGAGGCACCAGCAGACATGCAGTGCAAAGACAAGTTTCTAGTGCAGAGCGTTGTGGTGACTGAAGGCACAACAACCAAGGATGTCACTGGAGAGATGTTTAACAAAGGATCAGGTAATGTGGTGGATGAGAGGAAGTTGAAGGTTGTCTATGTCCAACCACCACGACCACCATCCCCCGTGCGTGAGGGATCTGAAGAAGGCTCGTCTCCTCGGGCTTCATTATCAGAAGGGGGCAACTTGAATTATCAAGATACAACTCGGGAATCTGATGAGCCACCATTGCTATCTGCTACAAGAGCACACAAGGATGCAGAAGATGTAACATCTGATTCTGAGACATCTGCTTTGATTTCAAGATTGACAGAAGAAAGAAACTCTGCTATTCAGCAGAACAATAAGCTTCTCGAGGAGATGGACCTTGTGAGGAGGGAAATTAGCAAGCAGAATGGTGGTTTCCCTTTTGTGTTCGTGGTGGTCGTTGCTCTTCTGGGAATTCTACTGGGGTATATCATGAAGAGATAGATGAGCTTGTCTAGTTCTGTTTCGTTAGGCCTTTTCTTCCTTAAGAATTGATTTGTTGTCTGCATTTTCTGATGCGTTTGCTCACATGTTCTACACTACCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCCGTAATTGCGTGCTTCAGATTGGCTGGCTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCTTGGAGAGCTTATGCAGTTAAGAAGTTTGCGCATCGGTATCTGTTGGTACAACTGTAAACTTGCTTTCAATTTA CTAGTGTCCTGATTG ]
[+] EMBL OSR28261A [ CTCACTCACTCCCCCAAACCCAAACCCTAGCTACTACTAGCTCCCCGCTCCGGATCAAGCGCATCTCGAGTTCGAGCGAGCATTCCCCTCTTCGGTTCGAGTGGGTTGGCTGGCGGCAGATGGGCTCCGACTCCAAGGAGTTGCTCGGGATCGAGCCGCTCGAGCTCCGGTTCTCCTTCGAGACGAAGAAGCAGATCTCATGCTCCATGCAGCTGACGAACAGAACAGATGACTACATCGCCTTTAAGGTCAAGACAACTAGCCCAAAGAAGTACTGCGTCAGGNCGAACAGTGGCATTGTGCCGCCACGGTNCACCAGCGATGTCATCGTA ]
[+] EMBL CA765509 [ agnAAGTACTGCGTCAGGCCGAACAGTGGCATTGTGCCGCCACGGTCCACCAGCGATGTCATCGTAACAATGCAAGCCCAACGGGAGGCACCAGCAGACATGCAGTGCAAAGACAAGTTTCTAGTGCAGAGCGTTGTGGTGACTGAAGGCACAACAACCAAGGATGTCACTGGAGAGATGTTTAACAAAGGATCAGGTAATGTGGTGGATGAGAGGAAGTTGAAGGTTGTCTATGTCCAACCACCACGACCACCATCCCCCGTGCGTGAGGGATCTGAAGAAGGCTCGTCTCCTCGGGCTTCATTATCAGAAGGGGGCAACTTGAATTATCAAGATACAACTCGGGAATCTGATGAGCCACCATTGCTATCTGCTACAAGAGCACACAAGGATGCAGAAGATGTAACATCTGATTCTGAGACATCTGCTTTGATTTCAAGATTGACAGAAGAAAGAAACTCTGCTATTCAGCAGAACAATAAGCTTCTCGAGGAGATGGACCTTGTGAGGAGGGAAATTAGCAAGCAGAATGGTGGTTTCCCTTTTGTGTTCGTGGTGGTCGTTGCTCTTCTGGGAATTCTACTGGGGTATATCATGAAGAGATAGATGAGCTTGTCTAGTTCTGTTTCGTTAGGCCTTTTCTTTCTTAAGAATTGATTTGNTGTCTGCATTTTCTGATGCGTTTGCTCACATGTTCTACACTACCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCTGTAATTGCGTGCTTCAGATTGGCTGGCTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAA ]
[-] EMBL CB964811 [ TATCATGAAGAGATAGATGAGCTTGTCTAGTTCTGTTTCGTTAGGCCTTTTCTTTCTTAAGAATTGATTTGTTGTCTGCATTTTCTGATGCGTTTGCTCACATGTTCTACACTACCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCTGTAATTGCGTGCTTCAGATTGGCTGGCTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCTTGGAGAGCTTATGCAGTTAAGAAGTTTGCGCATCGGTATCTGTTGGTAC ACTGTAAACTTGCTTTCAATTTANCTAGTGTCCTGATTGCCT ]
[-] EMBL CB966348 [ TATCATGAAGAGATAGATGAGCTTGTCTAGTTCTGTTTCGTTAGGCCTTTTCTTTCTTAAGAATTGATTTGTTGTCTGCATTTTCTGATGCGTTTGCTCACATGTTCTACACTACCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCTGTAATTGCGTGCTTCAGATTGGCTGGCTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCTTGGAGAGCTTATGCAGTTAAGAAGTTTGCGCATCGGTATCTGTTGGTACAACTGTAAACTTGCTTTCAATTTA CTAGTGTCCTGATTGCCT ]
[-] EMBL CB966568 [ TATCATGAAGAGATAGATGAGCTTGTCTAGTTCTGTTTCGTTAGGCCTTTTCTTTCTTAAGAATTGATTTGTTGTCTGCATTTTCTGATGCGTTTGCTCACATGTTCTACACTACCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCTGTAATTGCGTGCTTCAGATTGGCTGGCTACCATACCCAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCTTGGAGAGCTTATGCAGTTAAGAAGTTTGCGCATCGGTATCTGTTGGTACAACTGTAAACTTGCTTTCANTTTA CTAGTGTCCTGATTGCCT ]
[-] EMBL CF308644 [ ATCATGAAGAGATAGATGAGCTTGTCTAGTTCTGTTTCGTTAGGCCTTTTCTTTCTTAAGAATTGATTTGTTGTCTGCATTTTTTGATGCGTTTGCTCACATGTTTTACACTACCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCTGTAATTGCGTGCTTCAGATTGGCTGGCTACCATACACAGTCAATAACTCATTTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCTTGGAGAGCTTATGCAGTTAAGAAGTTTGCGCATCGGTATCTGTTGGTACAACTGTAAACTTGCTTTCAATTTA CTAGTGTCCTGATTGCCTGATTTTGATACGTTTGTCCTATGTATTGCAAAGACAGAAGACGTGGTTATGTTCAGTTATGTTTCGGAGCAAATGAGTTTGGTTCAATAGCTAACTTTTAAAATAATCAGAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_13795#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence
[GGTAATGTGGTGGATGAGAGGAAGTGAAGGTGTNNTATGTCCAACCACCCACGACCACCATCCCCCGTGCGTGAGGGATCTGAAGAAGGCTCGTCTCCTCGGGCTTCATTATCAGAAGGGGGCAACTTGAATTATCAAGATACAACTCGGGAATCTGATGAGCCACCATTGCTATTTGCTACAAGAGCACACAAGGATGCAGAAGATGTAACATCTGATTCTGAGACATCCGCTTTGATTTCAAGATTGACAGAAGAAAGAAACTTTGCTATTCAGCAGAACAATAAGCTTCTCGAGGAGATGGACCTTGTGAGGAGGGAAATTAGCAAGCAGAATGGTGGTTTCCCTTTTGTGTTCGTGGTGGTCGTTGCTCTTCTGGGAATTCTACTGGGGTATATCATGAAGAGATAGATGAGCTTGTCTAGTTCTGTTTCGTTAGGCCTTTTCTTTCTTAAGGATTGATTTGTTGTCTGCATTTTTTGATGCGTTTGCTCACATGTTCTACACTACCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCTGTAATTGCGTGCTTCAGATTGGCTGGCTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCTTGGAGAGCTTATGCAGTTAAGAAGTTTGCGCATCGGTAAAAAAAAAAAAAA]
[-] EMBL CA763549 [GGTAATGTGGTGGATGAGAGGAAGTGAAGGTGTNNTATGTCCAACCACCCACGACCACCATCCCCCGTGCGTGAGGGATCTGAAGAAGGCTCGTCTCCTCGGGCTTCATTATCAGAAGGGGGCAACTTGAATTATCAAGATACAACTCGGGAATCTGATGAGCCACCATTGCTATTTGCTACAAGAGCACACAAGGATGCAGAAGATGTAACATCTGATTCTGAGACATCCGCTTTGATTTCAAGATTGACAGAAGAAAGAAACTTTGCTATTCAGCAGAACAATAAGCTTCTCGAGGAGATGGACCTTGTGAGGAGGGAAATTAGCAAGCAGAATGGTGGTTTCCCTTTTGTGTTCGTGGTGGTCGTTGCTCTTCTGGGAATTCTACTGGGGTATATCATGAAGAGATAGATGAGCTTGTCTAGTTCTGTTTCGTTAGGCCTTTTCTTTCTTAAGGATTGATTTGTTGTCTGCATTTTTTGATGCGTTTGCTCACATGTTCTACACTACCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCTGTAATTGCGTGCTTCAGATTGGCTGGCTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCTTGGAGAGCTTATGCAGTTAAGAAGTTTGCGCATCGGTAAAAAAAAAAAAAA]
consensusID : consensus_13795#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 656 fasta sequence
[AGAGGACGAGACAAGGGGGAATCTTGAATTATCAAGATGTGAGATGTCTGATTATGCATTGTTTCATTCCCTTGTTTTTCTTTAATTCGTGTGGATATGACTGATTGTTNTTAGACGCAGACAACTCGGGAATTTGATGAGCCACCATTGCTATTTGCTACAAGAGCCCCCAAGGATGCAGAAGATGTAACATCTGATTTTGAGACATATGCTTTGATTTCAAGATTGACAGAAGAAAGAAACTTTGCTATTCAGCAGGACAATAAGCTTCTCGAGGAGATGGACCTTGTGAGGAGGGAAATTAGCAAGGAGAATGGTGGTTTCCCTTTTGTGTTCGTGGTGGTCGATGCTCTTCTGGGAATTCTACTGGGGTATATCATGAAGAGATAGATGAGCTTGTCTAGTTGTGTTTCGTTAGGCCTTTTCTTTTTTAAGAAATGATTTGTGGTCTGCATTTTTTGATGCGTTTGCTCACATGTTTTACCCTGCCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCCGTAATTGCGTGCTTAAGATTGGCTGGCTACCATACACAGTCAATAACTCATTTCCTTAACACTAAATTGCAAGTTAGTCGCGAGCTTGGAGAGCTTATGCAGTTTAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA759548 [AGAGGACGAGACAAGGGGGAATCTTGAATTATCAAGATGTGAGATGTCTGATTATGCATTGTTTCATTCCCTTGTTTTTCTTTAATTCGTGTGGATATGACTGATTGTTNTTAGACGCAGACAACTCGGGAATTTGATGAGCCACCATTGCTATTTGCTACAAGAGCCCCCAAGGATGCAGAAGATGTAACATCTGATTTTGAGACATATGCTTTGATTTCAAGATTGACAGAAGAAAGAAACTTTGCTATTCAGCAGGACAATAAGCTTCTCGAGGAGATGGACCTTGTGAGGAGGGAAATTAGCAAGGAGAATGGTGGTTTCCCTTTTGTGTTCGTGGTGGTCGATGCTCTTCTGGGAATTCTACTGGGGTATATCATGAAGAGATAGATGAGCTTGTCTAGTTGTGTTTCGTTAGGCCTTTTCTTTTTTAAGAAATGATTTGTGGTCTGCATTTTTTGATGCGTTTGCTCACATGTTTTACCCTGCCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCCGTAATTGCGTGCTTAAGATTGGCTGGCTACCATACACAGTCAATAACTCATTTCCTTAACACTAAATTGCAAGTTAGTCGCGAGCTTGGAGAGCTTATGCAGTTTAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA759550 [AGAGGACGAGACAAGGGGGAATCTTGAATTATCAAGATGTGAGATGTCTGATTATGCATTGTTTCATTCCCTTGTTTTTCTTTAATTCGTGTGGATATGACTGATTGTTNTTAGACGCAGACAACTCGGGAATTTGATGAGCCACCATTGCTATTTGCTACAAGAGCCCCCAAGGATGCAGAAGATGTAACATCTGATTTTGAGACATATGCTTTGATTTCAAGATTGACAGAAGAAAGAAACTTTGCTATTCAGCAGGACAATAAGCTTCTCGAGGAGATGGACCTTGTGAGGAGGGAAATTAGCAAGGAGAATGGTGGTTTCCCTTTTGTGTTCGTGGTGGTCGATGCTCTTCTGGGAATTCTACTGGGGTATATCATGAAGAGATAGATGAGCTTGTCTAGTTGTGTTTCGTTAGGCCTTTTCTTTTTTAAGAAATGATTTGTGGTCTGCATTTTTTGATGCGTTTGCTCACATGTTTTACCCTGCCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCCGTAATTGCGTGCTTAAGATTGGCTGGCTACCATACACAGTCAATAACTCATTTCCTTAACACTAAATTGCAAGTTAGTCGCGAGCTTGGAGAGCTTATGCAGTTTAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_13795#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence
[GACGAGCCAAGGGGGATCTCAAGATTGACAGAAGAAAGAAACTCTGCTATTCAGCAGAACAATAAGCTTCTCGAGGAGATGGACCTTGTGAGGAGGGAAATTAGCAAGCAGAATGGTGGTTTCCCTTTTGTGTTCGTGGTGGTCGTTGCTCTTCTGGGAATTCTACTGGGGTATATCATGAAGAGATAGATGAGCTTGTCTAGTTCTGTTTCGTTAGGCCTTTTCTTTCTTAAGAATTGATTTGTTGTCTGCATTTTTTGATGCGTTTGCTCACATGTTTTACACTACCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCTGTAATTGCGTGCTTCAGATTGGCTGGCTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCTTGGAGAGCTTATGCAGTTAAGAAGTTTGCGCATCGGTATCTGTTGGTACAACTGTAAACTTGCTTTCAATTTACTAGTGTCCTGATTGCCTGATTTTGATACGTTTGTCCTATGTATTGCAAAGACAGAAGACGTGGTTATGTTCAGTTATGTTTCGGAGCGAAAAAAAAAAA]
[-] EMBL CA759549 [GACGAGCCAAGGGGGATCTCAAGATTGACAGAAGAAAGAAACTCTGCTATTCAGCAGAACAATAAGCTTCTCGAGGAGATGGACCTTGTGAGGAGGGAAATTAGCAAGCAGAATGGTGGTTTCCCTTTTGTGTTCGTGGTGGTCGTTGCTCTTCTGGGAATTCTACTGGGGTATATCATGAAGAGATAGATGAGCTTGTCTAGTTCTGTTTCGTTAGGCCTTTTCTTTCTTAAGAATTGATTTGTTGTCTGCATTTTTTGATGCGTTTGCTCACATGTTTTACACTACCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCTGTAATTGCGTGCTTCAGATTGGCTGGCTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCTTGGAGAGCTTATGCAGTTAAGAAGTTTGCGCATCGGTATCTGTTGGTACAACTGTAAACTTGCTTTCAATTTACTAGTGTCCTGATTGCCTGATTTTGATACGTTTGTCCTATGTATTGCAAAGACAGAAGACGTGGTTATGTTCAGTTATGTTTCGGAGCGAAAAAAAAAAA]
consensusID : consensus_13795#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 561 fasta sequence
[GTAGAAATCTCGAGTTCGAGCGAGCATTCCCCTCTTCGGTTCGAGTGGGTTGGCTGGCGGCAGATGGGCTCCGACTCCAAGGAGTTGCTCGGGATCGAGCCGCTCGAGCTCCGGTTCTCCTGTACGGTTTCCTCGCCGGAAATTCCCTGCTTGTGAAATTCCGGAGCCTCATGCCGCTGGGGTTTTGTTTGTTTTTGCTGATTCTTTTGCTGTTTGGATTGAGCAGTCGAGACGAAGAAGCAGATCTCATGCTCCATGCAGCTGACGAACAGAACAGATGACTACATCGCCTTTAAGGTCAAGACAACTAGCCCAAAGAAGTACTGCGTCAGGCCGAACAGTGGCATTGTGCCGCCACGGTCCACCAGCGATGTCATCGTAACAATGCAAGCCCAACGGGAGGCACCAGCAGACATGCAGTGCAAAGACAAGTTTCTAGTGCAGAGCGTTGTGGTGACTGAAGGCACAACAACCAAGGATGTCACTGGAGAGATGTTTAACAAAGGATCAGGTAATGTGGTGGATGAGAGGAAGTTGAAGGTTGTCTATGTCCAACCACCA]
[+] EMBL CF308645 [GTAGAAATCTCGAGTTCGAGCGAGCATTCCCCTCTTCGGTTCGAGTGGGTTGGCTGGCGGCAGATGGGCTCCGACTCCAAGGAGTTGCTCGGGATCGAGCCGCTCGAGCTCCGGTTCTCCTGTACGGTTTCCTCGCCGGAAATTCCCTGCTTGTGAAATTCCGGAGCCTCATGCCGCTGGGGTTTTGTTTGTTTTTGCTGATTCTTTTGCTGTTTGGATTGAGCAGTCGAGACGAAGAAGCAGATCTCATGCTCCATGCAGCTGACGAACAGAACAGATGACTACATCGCCTTTAAGGTCAAGACAACTAGCCCAAAGAAGTACTGCGTCAGGCCGAACAGTGGCATTGTGCCGCCACGGTCCACCAGCGATGTCATCGTAACAATGCAAGCCCAACGGGAGGCACCAGCAGACATGCAGTGCAAAGACAAGTTTCTAGTGCAGAGCGTTGTGGTGACTGAAGGCACAACAACCAAGGATGTCACTGGAGAGATGTTTAACAAAGGATCAGGTAATGTGGTGGATGAGAGGAAGTTGAAGGTTGTCTATGTCCAACCACCA]
consensusID : consensus_13795#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 361 fasta sequence
[TTGGCCCGAGGCAGAATCTACTGGGGTATATCATGAAGAGATAGATGAGCTGTCTAGTTCTGTTTCGTTAGGCCTTTTCTTTCTTAAGAATTGATTTGTTGTCTGCATTTTCTGATGCGTTGGCTCACATGTTCTACACTACCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCTGTAATTGCGTGCTTCAGATGGGCTGGCTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCTTGGAGAGCTTATGCAGTTAAGAAGTTGGCGCATCGGTATCTGTGGGTACAACTGTAAACTTGCTTTCAATTTACTAGTGTCCTGATGGCC]
[+] EMBL BU673862 [TTGGCCCGAGGCAGAATCTACTGGGGTATATCATGAAGAGATAGATGAGCTGTCTAGTTCTGTTTCGTTAGGCCTTTTCTTTCTTAAGAATTGATTTGTTGTCTGCATTTTCTGATGCGTTGGCTCACATGTTCTACACTACCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCTGTAATTGCGTGCTTCAGATGGGCTGGCTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCTTGGAGAGCTTATGCAGTTAAGAAGTTGGCGCATCGGTATCTGTGGGTACAACTGTAAACTTGCTTTCAATTTACTAGTGTCCTGATGGCC]
consensusID : consensus_13795#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence
[TTTTCTTTCTTAAGATTGGATTTGTTGTCTGCATTTTCTTGATGCGTTTGCTCACATGTTCTACACTACCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCTGTAATTGCGTGCTTCAGATTGGCTGGCTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCTTGGAGAGCTTATGCAGTTAAGAAGTTTGCGCATCGGTATCTGTTGGTACAACTGTAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU070187 [TTTTCTTTCTTAAGATTGGATTTGTTGTCTGCATTTTCTTGATGCGTTTGCTCACATGTTCTACACTACCGCAGTCCGCATAGCAAATTCATCCTAGGATCTGGTATATTCTGTAATTGCGTGCTTCAGATTGGCTGGCTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCTTGGAGAGCTTATGCAGTTAAGAAGTTTGCGCATCGGTATCTGTTGGTACAACTGTAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13795#3 ------------------------------------------------------------
consensus_13795#5 ------------------------------------------------------------
consensus_13795#6 ------------------------------------------------------------
consensus_13795#1 ------------------------------------------------------------
consensus_13795#2 ------------------------------------------------------------
consensus_13795#0 ACCCGACATTCCCTCGTGCTCTTCCCATCCGCGACTCCAAAATTCCCGTCCGCTCCTCCA 60
consensus_13795#4 ------------------------------------------------------------
consensus_13795#3 ------------------------------------------------------------
consensus_13795#5 ------------------------------------------------------------
consensus_13795#6 ------------------------------------------------------------
consensus_13795#1 ------------------------------------------------------------
consensus_13795#2 ------------------------------------------------------------
consensus_13795#0 GGCAAGCAAGCACGGAAACCCACTCATCACTCACTCACTCCCCCAAACCCAAACCCTAGC 120
consensus_13795#4 ------------------------------------------------------------
consensus_13795#3 ------------------------------------------------------------
consensus_13795#5 ------------------------------------------------------------
consensus_13795#6 ------------------------------------------------------------
consensus_13795#1 ------------------------------------------------------------
consensus_13795#2 ------------------------------------------------------------
consensus_13795#0 TACTACTAGCTCCCCGCTCCGGATCAAGCGCATCTCGAGTTCGAGCGAGCATTCCCCTCT 180
consensus_13795#4 ------------------------------------------------------------
consensus_13795#3 ------------------------------------------------------------
consensus_13795#5 ------------------------------------------------------------
consensus_13795#6 ------------------------------------------------------------
consensus_13795#1 ------------------------------------------------------------
consensus_13795#2 ------------------------------------------------------------
consensus_13795#0 TCGGTTCGAGTGGGTTGGCTGGCGGCAGATGGGCTCCGACTCCAAGGAGTTGCTCGGGAT 240
consensus_13795#4 ------------------------------------------------------------
consensus_13795#3 ------------------------------------------------------------
consensus_13795#5 ------------------------------------------------------------
consensus_13795#6 ------------------------------------------------------------
consensus_13795#1 ------------------------------------------------------------
consensus_13795#2 ------------------------------------------------------------
consensus_13795#0 CGAGCCGCTCGAGCTCCGGTTCTCCTTCGAGACGAAGAAGCAGATCTCATGCTCCATGCA 300
consensus_13795#4 ------------------------------------------------------------
consensus_13795#3 ------------------------------------------------------------
consensus_13795#5 ------------------------------------------------------------
consensus_13795#6 ------------------------------------------------------------
consensus_13795#1 ------------------------------------------------------------
consensus_13795#2 ------------------------------------------------------------
consensus_13795#0 GCTGACGAACAGAACAGATGACTACATCGCCTTTAAGGTCAAGACAACTAGCCCAAAGAA 360
consensus_13795#4 ------------------------------------------------------------
consensus_13795#3 ------------------------------------------------------------
consensus_13795#5 ------------------------------------------------------------
consensus_13795#6 ------------------------------------------------------------
consensus_13795#1 ------------------------------------------------------------
consensus_13795#2 ------------------------------------------------------------
consensus_13795#0 GTACTGCGTCAGGCCGAACAGTGGCATTGTGCCGCCACGGTCCACCAGCGATGTCATCGT 420
consensus_13795#4 ------------------------------------------------------------
consensus_13795#3 ------------------------------------------------------------
consensus_13795#5 ------------------------------------------------------------
consensus_13795#6 ------------------------------------------------------------
consensus_13795#1 ------------------------------------------------------------
consensus_13795#2 ------------------------------------------------------------
consensus_13795#0 AACAATGCAAGCCCAACGGGAGGCACCAGCAGACATGCAGTGCAAAGACAAGTTTCTAGT 480
consensus_13795#4 ------------------------------------------------------------
consensus_13795#3 ------------------------------------------------------------
consensus_13795#5 ------------------------------------------------------------
consensus_13795#6 ------------------------------------------------------------
consensus_13795#1 ------------------------------------------------------------
consensus_13795#2 ------------------------------------------------------------
consensus_13795#0 GCAGAGCGTTGTGGTGACTGAAGGCACAACAACCAAGGATGTCACTGGAGAGATGTTTAA 540
consensus_13795#4 ------------------------------------------------------------
consensus_13795#3 ------------------------------------------------------------
consensus_13795#5 ------------------------------------------------------------
consensus_13795#6 ------------------------------------------------------------
consensus_13795#1 ----------GGTAATGTGGTGGATGAGAGGAAGTGAAGGTGTNNTATGTCCAACCACCC 50
consensus_13795#2 --------------------------AGAGGACGAGACAAGGGGGAATCTTGAATTATCA 34
consensus_13795#0 CAAAGGATCAGGTAATGTGGTGGATGAGAGGAAGTTGAAGGTTGTCTATGTCCAACCACC 600
consensus_13795#4 ------------------------------------------------------------
consensus_13795#3 ------------------------------------------------------------
consensus_13795#5 ------------------------------------------------------------
consensus_13795#6 ------------------------------------------------------------
consensus_13795#1 ACGACCACCATCCCCCGTGCGTGAGGGATCTGAAGAAGGCTCGTCTCCTCGGGCTTCATT 110
consensus_13795#2 AGATGTGAGATGTCTGAT-TATGCATTGTTTCATTC--CCTTGTTTTTCTTTAATTCGTG 91
consensus_13795#0 ACGACCACCATCCCCCGTGCGTGAGGGATCTGAAGAAGGCTCGTCTCCTCGGGCTTCATT 660
consensus_13795#4 ------------------------------------------------------------
consensus_13795#3 ------------------------------------------------------------
consensus_13795#5 ------------------------------------------------------------
consensus_13795#6 ------------------------------------------------------------
consensus_13795#1 ATCAGAAGGGGGCAACTTGAATTATCAAGATACAACTCGGGAATCTGATGAGCCACCATT 170
consensus_13795#2 --TGGATATGACTGATTGTTNTTAGACGCAGACAACTCGGGAATTTGATGAGCCACCATT 149
consensus_13795#0 ATCAGAAGGGGGCAACTTGAATTATCAAGATACAACTCGGGAATCTGATGAGCCACCATT 720
consensus_13795#4 -----------------------------GTAGAAATCTCGAGTTCGAGCGAGCATTCCC 31
consensus_13795#3 ----------------------------------------------------GACGAGCC 8
consensus_13795#5 ------------------------------------------------------------
consensus_13795#6 ------------------------------------------------------------
consensus_13795#1 GCTATTTGCTACAAGAGCACACAAGGATGCAGAAGATGTAACATCTGATTCTGAGACATC 230
consensus_13795#2 GCTATTTGCTACAAGAGCCCCCAAGGATGCAGAAGATGTAACATCTGATTTTGAGACATA 209
consensus_13795#0 GCTATCTGCTACAAGAGCACACAAGGATGCAGAAGATGTAACATCTGATTCTGAGACATC 780
consensus_13795#4 CTCTTCGGTTCGAGTGGGTTGGCTGGCGGCAGATGGGCTCCGACTCCAAGGAGTTGCTCG 91
consensus_13795#3 AAGGGGGATCTCAAGATTGACAGAAGAAAGAAACTCTGCTATTCAGCAGAACAATAAGCT 68
consensus_13795#5 ------------------------------------------------------------
consensus_13795#6 ------------------------------------------------------------
consensus_13795#1 CGCTTTGATTTCAAGATTGACAGAAGAAAGAAACTTTGCTATTCAGCAGAACAATAAGCT 290
consensus_13795#2 TGCTTTGATTTCAAGATTGACAGAAGAAAGAAACTTTGCTATTCAGCAGGACAATAAGCT 269
consensus_13795#0 TGCTTTGATTTCAAGATTGACAGAAGAAAGAAACTCTGCTATTCAGCAGAACAATAAGCT 840
consensus_13795#4 GGATCGAGCCGCTCGAGCTCCGGTTCTCCTGTACGGTTTCCTCGCCGGAAATTCCCTGCT 151
consensus_13795#3 TCTCGAGGAGATGGACCTTGTGAGGAGGGAAATTAGCAAGCAGAATGGTGGTTTCCCTTT 128
consensus_13795#5 ------------------------------------------------------------
consensus_13795#6 ------------------------------------------------------------
consensus_13795#1 TCTCGAGGAGATGGACCTTGTGAGGAGGGAAATTAGCAAGCAGAATGGTGGTTTCCCTTT 350
consensus_13795#2 TCTCGAGGAGATGGACCTTGTGAGGAGGGAAATTAGCAAGGAGAATGGTGGTTTCCCTTT 329
consensus_13795#0 TCTCGAGGAGATGGACCTTGTGAGGAGGGAAATTAGCAAGCAGAATGGTGGTTTCCCTTT 900
consensus_13795#4 TGTGAAATTCCGGAGCCTCATGCCGCTGGGGTTTTGTTTGTTTT-TGCTGATTCTTTTGC 210
consensus_13795#3 TGTGTTCGT--GGTGGTCGTTGCTCTTCTGGGAATTCTACTGGGGTATATCATGAAGAGA 186
consensus_13795#5 -------------------TTGGCCCGAGGCAGAATCTACTGGGGTATATCATGAAGAGA 41
consensus_13795#6 ------------------------------------------------------------
consensus_13795#1 TGTGTTCGT--GGTGGTCGTTGCTCTTCTGGGAATTCTACTGGGGTATATCATGAAGAGA 408
consensus_13795#2 TGTGTTCGT--GGTGGTCGATGCTCTTCTGGGAATTCTACTGGGGTATATCATGAAGAGA 387
consensus_13795#0 TGTGTTCGT--GGTGGTCGTTGCTCTTCTGGGAATTCTACTGGGGTATATCATGAAGAGA 958
consensus_13795#4 TGTTTGGATTGAGCAGTCGAGACGAAGAAGCAGATCTCA-TGCTCCATGCAGCTGACGAA 269
consensus_13795#3 TAGATGAGCTTGTCTAGTTCTGTTTC--GTTAGGCCTTTTCTTTCTTAAGAATTGATTTG 244
consensus_13795#5 TAGATGAGCT-GTCTAGTTCTGTTTC--GTTAGGCCTTTTCTTTCTTAAGAATTGATTTG 98
consensus_13795#6 ------------------------------------TTTTCTTTCTTAAGATTGGATTTG 24
consensus_13795#1 TAGATGAGCTTGTCTAGTTCTGTTTC--GTTAGGCCTTTTCTTTCTTAAGGATTGATTTG 466
consensus_13795#2 TAGATGAGCTTGTCTAGTTGTGTTTC--GTTAGGCCTTTTCTTTTTTAAGAAATGATTTG 445
consensus_13795#0 TAGATGAGCTTGTCTAGTTCTGTTTC--GTTAGGCCTTTTCTTTCTTAAGAATTGATTTG 1016
consensus_13795#4 CAGAACAGATGACTACATCGCCTTTAAGGTCAAGACAACTAGCCCA-AAGAAGTACTGCG 328
* *** * *
consensus_13795#3 TT-GTCTGCATTTT-TTGATGCGTTTGCTCACATGTTTTACACTACCGCAGTCCGCATAG 302
consensus_13795#5 TT-GTCTGCATTTT-CTGATGCGTTGGCTCACATGTTCTACACTACCGCAGTCCGCATAG 156
consensus_13795#6 TT-GTCTGCATTTTCTTGATGCGTTTGCTCACATGTTCTACACTACCGCAGTCCGCATAG 83
consensus_13795#1 TT-GTCTGCATTTT-TTGATGCGTTTGCTCACATGTTCTACACTACCGCAGTCCGCATAG 524
consensus_13795#2 TG-GTCTGCATTTT-TTGATGCGTTTGCTCACATGTTTTACCCTGCCGCAGTCCGCATAG 503
consensus_13795#0 TT-GTCTGCATTTT-CTGATGCGTTTGCTCACATGTTCTACACTACCGCAGTCCGCATAG 1074
consensus_13795#4 TCAGGCCGAACAGTGGCATTGTGCCGCCACGGTCCACCAGCGATGTCATCGTA-ACAATG 387
* * * * * * ** * * * * * * ** ** *
consensus_13795#3 CAAATTCATCCTAGGAT-----CTGGTATATTCTGTAATTGCGTGCTTCAGATTGGCTGG 357
consensus_13795#5 CAAATTCATCCTAGGAT-----CTGGTATATTCTGTAATTGCGTGCTTCAGATGGGCTGG 211
consensus_13795#6 CAAATTCATCCTAGGAT-----CTGGTATATTCTGTAATTGCGTGCTTCAGATTGGCTGG 138
consensus_13795#1 CAAATTCATCCTAGGAT-----CTGGTATATTCTGTAATTGCGTGCTTCAGATTGGCTGG 579
consensus_13795#2 CAAATTCATCCTAGGAT-----CTGGTATATTCCGTAATTGCGTGCTTAAGATTGGCTGG 558
consensus_13795#0 CAAATTCATCCTAGGAT-----CTGGTATATTCTGTAATTGCGTGCTTCAGATTGGCTGG 1129
consensus_13795#4 CAAGCCCAACGGGAGGCACCAGCAGACATGCAGTGCAAAGACAAGTTTCTAGT--GCAGA 445
*** ** * * * * ** * ** * * ** * ** *
consensus_13795#3 CTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCT 417
consensus_13795#5 CTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCT 271
consensus_13795#6 CTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCT 198
consensus_13795#1 CTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCT 639
consensus_13795#2 CTACCATACACAGTCAATAACTCATTTCCTTAACACTAAATTGCAAGTTAGTCGCGAGCT 618
consensus_13795#0 CTACCATACACAGTCAATAACTCATCTCCTTAACACTAAGTTGCAAGTTAGTCGCGAGCT 1189
consensus_13795#4 GCGTTGTG-GTGACTGAAGGCACAACAACCAAGGATGTCACTGGAGAGATGTTTAACAAA 504
* * * ** * * * ** * **
consensus_13795#3 TGGAGAGCTTATGCAGTTAAGAAGTTTGCGCATCGGTATCTGTTGGTACAACTGTAAACT 477
consensus_13795#5 TGGAGAGCTTATGCAGTTAAGAAGTTGGCGCATCGGTATCTGTGGGTACAACTGTAAACT 331
consensus_13795#6 TGGAGAGCTTATGCAGTTAAGAAGTTTGCGCATCGGTATCTGTTGGTACAACTGTAAAAA 258
consensus_13795#1 TGGAGAGCTTATGCAGTTAAGAAGTTTGCGCATCGGTAAAAAAAAAAAAAA--------- 690
consensus_13795#2 TGGAGAGCTTATGCAGTTTAAAAA-------------AAAAAAAAAAAAAA--------- 656
consensus_13795#0 TGGAGAGCTTATGCAGTTAAGAAGTTTGCGCATCGGTATCTGTTGGTACAACTGTAAACT 1249
consensus_13795#4 GGATCAGGTAATGTGGTGGATGAGAGGAAGTTGAAGGTTGTCTATGTCCAACCACCA--- 561
* ** * *** ** * * **
consensus_13795#3 TGCTTTCAATTTACTAGTGTCCTGATTGCCTGATTTTGATACGTTTGTCCTATGTATTGC 537
consensus_13795#5 TGCTTTCAATTTACTAGTGTCCTGATGGCC------------------------------ 361
consensus_13795#6 AAAAAAAAAAAAAAA--------------------------------------------- 273
consensus_13795#1 ------------------------------------------------------------
consensus_13795#2 ------------------------------------------------------------
consensus_13795#0 TGCTTTCAATTTACTAGTGTCCTGATTGCCTGATTTTGATACGTTTGTCCTATGTATTGC 1309
consensus_13795#4 ------------------------------------------------------------
consensus_13795#3 AAAGACAGAAGACGTGGTTATGTTCAGTTATGTTTCGGAGCGAAAAAAAAAAA------- 590
consensus_13795#5 ------------------------------------------------------------
consensus_13795#6 ------------------------------------------------------------
consensus_13795#1 ------------------------------------------------------------
consensus_13795#2 ------------------------------------------------------------
consensus_13795#0 AAAGACAGAAGACGTGGTTATGTTCAGTTATGTTTCGGAGCAAATGAGTTTGGTTCAATA 1369
consensus_13795#4 ------------------------------------------------------------
consensus_13795#3 --------------------------------------------
consensus_13795#5 --------------------------------------------
consensus_13795#6 --------------------------------------------
consensus_13795#1 --------------------------------------------
consensus_13795#2 --------------------------------------------
consensus_13795#0 GCTAACTTTTAAAATAATCAGAAAAAAAAAAAAAAAAAAAAAAA 1413
consensus_13795#4 --------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||