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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13841#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 2414 fasta sequence
[CAAGAAGGCACGTCCCCCTTCTAGAAGCTTCCGCTAGCTTCCCATCGGCGCGGGGGGAATGGACGACGACGACCTCGGCTACCCGCCCGGCATGGCCGGCCTGGACGCGATGGCCGGCCTCGGTGGCCTCGGCGGGATGGGCGGCCTCGGTGGGCTCGGCGGGATGGGCGGCCTTGGTGGGCTCGGCGGGATGGGCGGCCTCGGCGGACTGGGCGGCTTCGGCGGCGGGGGCATGGAGGACCTGTACGGCGGCGGGGGAGGTGCGGGGGGGGAGGAGGGAGGGGAGGGGCCGTACGCGGCGGAGATGGAGGTCGGGGAGGAGAAGGAGATCGGGAAGGAGGGGCTCAGGAAGAAGCTGGTGAAGGAGGGCGAGGGGTGGGAGCGCCCCGACGCCGGCGACGAGGTCCAAGTGCACTACACGGGGACGCTGTTGGATGGCACCAAGTTCGATTCCAGCCGGGATCGCGATGCTCCGTTCAAGTTCACCCTGGGCCAAGGCCAAGTTATTAAGGGATGGGATTTGGGCATTAAGACCATGA--AGAAAGGTGAGAATGCTATTTTCACCATTCCACCAGAGCTTGCATATGGTGAGGATGGCTCCCCTCCAGTTATCCCTCCAAATGCCACGCTGCAGTTTGATGTCGAGCTTATCTCCTGGGAAAGTGTCAAGGACATTTGCAAGGACGGTGGCATCTTGAAGAAGGTACTAGCTGAAGGCACGAAGTGGGAGAACCCAAGAGACCGCGATGAAGTTTTTGTTAAGTATGAGGTGAGGCTTGAGGATGGGACTGTTGTAGCAGAATCTGATGGTGTCGAGTTCACCGTGAAAGATGGGCATTTCTGTCCTGCCATATCCAAGGCTGTGAAGACTATGAAGAAGAATGAGAAGGCCCTCCTCACAGTCAAACCACAATATGGCTTCGGTGAGCAAGGCAGGTCAGCCGCTAGAGATGAAGCTGCAATACCCCCTAATGCTACATTGCACATTAATCTTGAATTGGTGTCCTGGAAGGCAGTCACTGAGATTGGTAATGATAAGAAAATCCTCAAGAAGATCCTCCATGAGGGTGAAGGCTATGAGCGTCCCAGTGATTGCACACTTGTCAGAGTGAAACTTATTGGAAAGTTAGAGGATGGTACCATATTTGTCACAAGAGGTCATGATGGTGACGAGCCATTCGAGTTTAAGACTGATGAAGACCAAGTGGTTGAAGGGCTTGACAAAGCAGTACTTAGCATGAAGAAAGGAGAAGTTGCATTGGTGACTATTCCACCAGAGTATGCGTTTGGATCTGATGAAACAAGACAAGATTTGTCTGTTGTCCCTCCTAATTCAACTGTTTATTATGAGGTGGAGCTTGTGTCCTTCGATAAGGAGAAAGAATCATGGGACATGAAGGAGAATACTGAGAAGATTGAAGCGGCTGCAAAGAAGAAAGATGAAGGGAATGCTTGGTTTAAGATGGAAAAGTATGCCAGGGCTTCTAAGAGATATGGAAAGGCTTTAAACTTCATCCAGTATGACAGCTCCTTCAGTGAAGAAGAGAAGCAGCTGTCCAAACCACTCAAGGTGAGTTGCAAGCTCAACAATGCTGCATG-TAAGCTGAAGCTTAAAGACTACAAGGAAGCAAAGGAACTGTGTACTGAGGTCCTGGAGCTTGACAGCATGAATGTGAAGGCTTTTTACAGAAGGGCACAGGCACACATGTATCTTGTTGACTTTGATTTGGCAGAACTGGATATCAAGAAAGCACTAGAAATAGATCCAGACAACAGGGATGTGAAGATGGGGTACAGGAGGCTGAAGGAGAAGGTCAAGGAGCAGAAGAGGAAGGAAACGAAATTGTACGGCAACATGATTTCGAAGCTAAGCAAGCTTGAAGACTCGGAAACCGAAGGAGGCACAACTCAGGCGCCAAGCAAGAAGCATGGCCTATGGCCACTCACCGCGCTGCTGAGAAGGCTGTTCACGAGGAGTGACGGTAGCAAGGAGTCGATGCTGTGGCTGGTGCTGAGGCTGCTCATTCCGGTGGTGCTGCTGGTGG-CGGTCTGTGTGGCTTTCTACATGCGCAGCGGACCTCCTGAAGTAGACTGCATCAACTGTTAAATTCTTGTATATTGTCGTCTACTTTACATCCGGCTGTAGAGGTCCGTCTGCCAGCTGTGCTTCACAATCGGAGTCGACTACTACTGTTCACGGT-AAGTTATTT-CCGTGGCTGCTGTTGTGTTCAATATGTATAGAGGACAGGCAAGCATTGCATCAGCTGCACCTGTGAGCTAGACACGTTCGAGT-GA-TTGAAACATACAAAGGAAAAAATGATACTGAAAGTTCAA--AAAAAAAG-GAATGATACTAGAAGCTACTGAAAGTTCGCTTCTCGTCCACCATTTTGGTCGAGGCAACAGGTCTACTGGGA]
[+] EMBL AK073233 [CAAGAAGGCACGTCCCCCTTCTAGAAGCTTCCGCTAGCTTCCCATCGGCGCGGGGGGAATGGACGACGACGACCTCGGCTACCCGCCCGGCATGGCCGGCCTGGACGCGATGGCCGGCCTCGGTGGCCTCGGCGGGATGGGCGGCCTCGGTGGGCTCGGCGGGATGGGCGGCCTTGGTGGGCTCGGCGGGATGGGCGGCCTCGGCGGACTGGGCGGCTTCGGCGGCGGGGGCATGGAGGACCTGTACGGCGGCGGGGGAGGTGCGGGGGGGGAGGAGGGAGGGGAGGGGCCGTACGCGGCGGAGATGGAGGTCGGGGAGGAGAAGGAGATCGGGAAGGAGGGGCTCAGGAAGAAGCTGGTGAAGGAGGGCGAGGGGTGGGAGCGCCCCGACGCCGGCGACGAGGTCCAAGTGCACTACACGGGGACGCTGTTGGATGGCACCAAGTTCGATTCCAGCCGGGATCGCGATGCTCCGTTCAAGTTCACCCTGGGCCAAGGCCAAGTTATTAAGGGATGGGATTTGGGCATTAAGACCATGA AGAAAGGTGAGAATGCTATTTTCACCATTCCACCAGAGCTTGCATATGGTGAGGATGGCTCCCCTCCAGTTATCCCTCCAAATGCCACGCTGCAGTTTGATGTCGAGCTTATCTCCTGGGAAAGTGTCAAGGACATTTGCAAGGACGGTGGCATCTTGAAGAAGGTACTAGCTGAAGGCACGAAGTGGGAGAACCCAAGAGACCGCGATGAAGTTTTTGTTAAGTATGAGGTGAGGCTTGAGGATGGGACTGTTGTAGCAGAATCTGATGGTGTCGAGTTCACCGTGAAAGATGGGCATTTCTGTCCTGCCATATCCAAGGCTGTGAAGACTATGAAGAAGAATGAGAAGGCCCTCCTCACAGTCAAACCACAATATGGCTTCGGTGAGCAAGGCAGGTCAGCCGCTAGAGATGAAGCTGCAATACCCCCTAATGCTACATTGCACATTAATCTTGAATTGGTGTCCTGGAAGGCAGTCACTGAGATTGGTAATGATAAGAAAATCCTCAAGAAGATCCTCCATGAGGGTGAAGGCTATGAGCGTCCCAGTGATTGCACACTTGTCAGAGTGAAACTTATTGGAAAGTTAGAGGATGGTACCATATTTGTCACAAGAGGTCATGATGGTGACGAGCCATTCGAGTTTAAGACTGATGAAGACCAAGTGGTTGAAGGGCTTGACAAAGCAGTACTTAGCATGAAGAAAGGAGAAGTTGCATTGGTGACTATTCCACCAGAGTATGCGTTTGGATCTGATGAAACAAGACAAGATTTGTCTGTTGTCCCTCCTAATTCAACTGTTTATTATGAGGTGGAGCTTGTGTCCTTCGATAAGGAGAAAGAATCATGGGACATGAAGGAGAATACTGAGAAGATTGAAGCGGCTGCAAAGAAGAAAGATGAAGGGAATGCTTGGTTTAAGATGGAAAAGTATGCCAGGGCTTCTAAGAGATATGGAAAGGCTTTAAACTTCATCCAGTATGACAGCTCCTTCAGTGAAGAAGAGAAGCAGCTGTCCAAACCACTCAAGGTGAGTTGCAAGCTCAACAATGCTGCATG TAAGCTGAAGCTTAAAGACTACAAGGAAGCAAAGGAACTGTGTACTGAGGTCCTGGAGCTTGACAGCATGAATGTGAAGGCTTTTTACAGAAGGGCACAGGCACACATGTATCTTGTTGACTTTGATTTGGCAGAACTGGATATCAAGAAAGCACTAGAAATAGATCCAGACAACAGGGATGTGAAGATGGGGTACAGGAGGCTGAAGGAGAAGGTCAAGGAGCAGAAGAGGAAGGAAACGAAATTGTACGGCAACATGATTTCGAAGCTAAGCAAGCTTGAAGACTCGGAAACCGAAGGAGGCACAACTCAGGCGCCAAGCAAGAAGCATGGCCTATGGCCACTCACCGCGCTGCTGAGAAGGCTGTTCACGAGGAGTGACGGTAGCAAGGAGTCGATGCTGTGGCTGGTGCTGAGGCTGCTCATTCCGGTGGTGCTGCTGGTGG CGGTCTGTGTGGCTTTCTACATGCGCAGCGGACCTCCTGAAGTAGACTGCATCAACTGTTAAATTCTTGTATATTGTCGTCTACTTTACATCCGGCTGTAGAGGTCCGTCTGCCAGCTGTGCTTCACAATCGGAGTCGACTACTACTGTTCACGGT AAGTTATTT CCGTGGCTGCTGTTGTGTTCAATATGTATAGAGGACAGGCAAGCATTGCATCAGCTGCACCTGTGAGCTAGACACGTTCGAGT GA TTGAAACATACAAAGGAAAAAATGATA ]
[+] EMBL OSS14118A [ GCACGTCCCCCTTCTAGAAGCTTCCGCTAGCTTCCCATCGGCGCGGGGGGAATGGACGACGACGACCTCGGCTACCCGCCCGGNATGGCCGGCCTGGACGCNATGGCCGGCCTCGGTGGCCTCGGNGGGATGGGCGGNCTCGGTGGGCTCGGCGGGATGGNCGGCCTTGGTGGGCTCGGCGGGATNNGCGGCCTng ]
[+] EMBL CB639043 [ CCCGACGCCGGCGACGAGGTCCAAGTGCACTACACGGGGACGCTGTTGGATGGCACCAAGTTCGATTCCAGCCGGGATCGCGATGCTCCGTTCAAGTTCACCCTGGGCCAAGGCCAAGTTATTAAGGGATGGGATTTGGGCATTAAGACCATGATTTTTTTTGTGAGAATGCTATTTTCACCATTCCACCAGAGCTTGCATATGGTGAGGATGGCTCCCCTCCAGTTATCCCTCCAAATGCCACGCTGCAGTTTGATGTCGAGCTTATCTCCTGGGAAAGTGTCAAGGACATTTGCAAGGACGGTGGCATCTTGAAGAAGGTACTAGCTGAAGGCACGAAGTGGGAGAACCCAAGAGACCGCGATGAAGTTTTTGTTAAGTATGAGGTGAGGCTTGAGGATGGGACTGTTGTAGCAGAATCTGATGGTGTCGAGTTCACCGTGAAAGATGGGCATTTCTGTCCTGCCATATCCAAGGCTGTGAAGACTATGAAGAAGAATGAGAAGGCCCTCCTCACAGTCAAACCACAATATG ]
[+] EMBL CB649971 [ AAGAGACCGCGATGAAGTTTTTGTTAAGTATGAGGTGAGGCTTGAGGATGGGACTGTTGTAGCAGAATCTGATGGTGTCGAGTTCACCGTGAAAGATGGGCATTTCTGTCCTGCCATATCCAAGGCTGTGAAGACTATGAAGAAGAATGAGAAGGCCCTCCTCACAGTCAAACCACAATATGGCTTCGGTGAGCAAGGCAGGCCAGCCGCTAGAGATGAAGCTGCAATACCCCCTAATGCTACATTGCACATTAATCTTGAATTGGTGTCCTGGAAGGCAGTCACTGAGATTGGTAATGATAAGAAAATCCTCAAGAAGATCCTCCATGAGGGTGAAGGCTATGAGCGTCCCAGTGATTGCACACTTGTCAGAGTGAAACTTATTGGAAAGTTAGAGGATGGTACCATATTTGTCACAAGAGGTCATGATGGTGACGAGCCATTCGAGTTTAAGACTGATGAAGACCAAGTGGTTGAAGGGCTTGACAAAGCAGTACTTAGCATGAAGAAAGGAGAAGTTGCATTGGTGACTATTCCACCAGAGTATGCGTTTGGATCTGATGAAACAAGACAAGATTTGTCTGTTGTCCCTCCTAATTCAACTGTTTATTATGAGGTGGAGCTTGTGTCCTTCGATAAGGAGAAAGAATCATGGGACATGAAGGAGAATACTGAGAAGATTGAAGCGGCTGCAAAGAAGAAAGATGAAGGGAATGCTTGGTTTAAGATGGAAAAGTATGCCAGGGCTTCTAAGAGATATGGAAAGGCTTTAAACTTCATCCAGTATGACAGCTCCTTCAGTGAAGAAGAGAAGCAGCTGT ]
[-] EMBL CB649972 [ AGGCTTT AACTTCATCCAGTATGACAGCTCCTTCAGTGAAGAAGAGAAGCAGCTGTCCAAACCACTCAAGGTGAGTTGCAAGCTCAACAATGCTGCATG TAAGCTGAAGCTTAAAGACTACAAGGAAGCAAAGGAACTGTGTACTGAGGTCCTGGAGCTTGACAGCATGAATGTGAAGGCTTTTTACAGAAGGGCACAGGCACACATGTATCTTGTTGACTTTGATTTGGCAGAACTGGATATCAAGAAAGCACTAGAAATAGATCCAGACAACAGGGATGTGAAGATGGGGTACAGGAGGCTGAAGGAGAAGGTCAAGGAGCAGAAGAGGAAGGAAACGAAATTGTACGGCAACATGATTTCGAAGCTAAGCAAGCTTGAAGACTCGGAAACCGAAGGAGGCACAACTCAGGCGCCAAGCAAGAAGCATGGCCTATGGCCACTCACCGCGCTGCTGAGAAGGCTGTTCACGAGGAGTGACGGTAGCAAGGAGTCGATGCTGTGGCTGGTGCTGAGGCTGCTCATTCCGGTGGTGCTGCTGGTGG CGGTCTGTGTGGCTTTCTACATGCGCAGCGGACCTCCTGAAGTAGACTGCATCAACTGTTAAATTCTTGTATATTGTCGTCTACTTTACATCCGGCTGTAGAGGTCCGTCTGCCAGCTGTGCTTCACAATCGGAGTCGACTACTACTGTTCACGGT AAGTTATTT CCGTGGCTGCTGTTGTGTTCAATATGTATAGAGGACAGGCAAGCATTGCATCAGCTGCACCTGTGAGCTAGACACGTTCGAGT GA TTGAAACATACAAAGGAAAAAATGATACTGAA ]
[-] EMBL CB661352 [ GTATGACAGCTCCTTCAGTGAAGAAGAGAAGCAGCTGTCCAAACCACTCAAGGTGAGTTGCAAGCTCAACAATGCTGCATG TAAGCTGAAGCTTAAAGACTACAAGGAAGCAAAGGAACTGTGTACTGAGGTCCTGGAGCTTGACAGCATGAATGTGAAGGCTTTTTACAGAAGGGCACAGGCACACATGTATCTTGTTGACTTTGATTTGGCAGAACTGGATATCAAGAAAGCACTAGAAATAGATCCAGACAACAGGGATGTGAAGATGGGGTACAGGAGGCTGAAGGAGAAGGTCAAGGAGCAGAAGAGGAAGGAAACGAAATTGTACGGCAACATGATTTCGAAGCTAAGCAAGCTTGAAGACTCGGAAACCGAAGGAGGCACAACTCAGGCGCCAAGCAAGAAGCATGGCCTATGGCCACTCACCGCGCTGCTGAGAAGGCTGTTCACGAGGAGTGACGGTAGCAAGGAGTCGATGCTGTGGCTGGTGCTGAGGCTGCTCATTCCGGTGGTGCTGCTGGTGG CGGTCTGTGTGGCTTTCTACATGCGCAGCGGACCTCCTGAAGTAGACTGCATCAACTGTTAAATTCTTGTATATTGTCGTCTACTTTACATCCGGCTGTAGAGGTCCGTCTGCCAGCTGTGCTTCACAATCGGAGTCGACTACTACTGTTCCCGGT AAGTTATTT CCGTGGCTGCTGTTGTGTTCAATATGTATAGAGGACAGGCAAGCATTGCATCAGCTGCACCTGTGAACTAGACACGTTCGAGT GA TTGAAAGATACAAAGGAAAAAATGATACTGAAAGTTCAA AAAAAAAG G ]
[+] EMBL AA750759 [ ATGACAGCTCCTTCAGTGAAGAAGAGAAGCAGCTGTCCAAACCACTCAAGGTGAGTTGCAAGCTCAACAATGCTGCATGTTAAGCTGAAGCTTAAAGACTACAAGGAAGCAAAGGAACTGTGTACTGAGGTCCTGGAGCTTGACAGCATGAATGTGAAGGCTTTTTACAGAAGGGCACAGGCACACATGTATCTTGTTGACTTGAATTTGGCAG ACTGGATATC ]
[-] EMBL AW070022 [ gccgagGTACTGAGGTCCTGGAGCTTGACAGCATGAATGTGAAGGCTTTTTACAGAAGGGCACAGGCACACTTGTATCTTGTTGACTTTGATTTGGCAGAACTGGATATCAAGAAAGCACTAGAAATAGATCCAGACAACAGGGATGTGAA ]
[+] EMBL BE230595 [ GCACTAGAAATAGATCCAGACAACAGGGATGTGAAGATGGGGTACAGGAGGCTGAAGGAGAAGGTCAAGGAGCAGAAGAGGAAGGAAACGAAATTGTACGGCAACATGATTTCGAAGCTAAGCAAGCTTGAAGACTCGGAAACCGAAGGAGGCACAACTCAGGCGCCAAGCAAGAAGCATGGCCTATGGCCACTCACCGCGCTGCTGAGAAGGCTGTTCACGAGGAGTGACGGTAGCAAGGAGTCGATGCTGTGGCTGGTGCTGAGGCTGCTCATTCCGGTGGTGCTGCTGGTGGCCGGTCTGTGTGGCTTTCTACATGCGCAGCGGACCTACTGAAGTAGACTGCATCAACTGTTAAATTCTTGTATATTGTCGTCTACTTTACATCCGGCTGTAGAGGTCCGTCTGCCANCTGTGCTTCACAATCGGAGTCGACTACTACTGTTCACGGTAAAGTTATTTCCCGCGGCTGCTGTTGT TTCAATATGTATAGAGGACAGGCAAGCATTGCATCAGCTGCACCTGTGAGCTANACACGTTCGAATCGATTTGAAACATACAAAGGAAAAAATGATACTGAAAG TCAACTAAAAAAAa aa ]
[-] EMBL CB639044 [ CGAAGGAGGCACAATTCAGGCGCCAAGCAAGAAGCATGGCCTATGGCCACTCACCGCGCTGCTGAGAAGGCTGTTCACGAGGAGTTACGGTAGCAAGGAGTCGATGCTGTGGCTGGTGCTGAGGCTGCTCATTCCGGTGGTGCTGCTGGTGG CGGTCTGTGTGGCTTTCTACATGCGCAGCGGACCTCCTGAAGTAGACTGCATCAACTGTTAAATTCTTGTATATAGT ATCAACTTTACATCCGGCTGTAGAGGTCCGTCTGCCAGCTGTGCTTCACAATCGGAGTCGACTACTACTGTTCACGGT AAGTTATTT CCGTGGCTGCTGTTGTGTTCAATATGTATAGAGGACAGGCAAGCATTGCATCAGCTGCACCTGTGAGCTAGACACGTTCGAGT GA TTGAAACATACAAAGGAAAAAATGATACTGAAA ]
[+] EMBL CA754278 [ cGCGCCCAGCAAGAAGCATGGCCTATGGCCACTCACCGCGCTGCTGAGAAGGCTGTTCACGAGGAGTGACGGTAGCAAGGAGTCGATGCTGTGGCTGGTGCTGAGGCTGCTCATTCCGGTGGTGCTGCTGGTGG CGGTCTGTGTGGCTTTCTACATGCGCAGCGCACCTCCTGAAGTAGACTGCATCAACTGTTAAATTCTTGTATATTGTCGTCTACTTTACATCCGGCTGTAGAGGTCCGTCTGCCAGCTGTGCTTCACAATCGGAGTCGACTACGACTGTTCACGGT AAGTTATTT CCGTGGCTGCTGTTGTGTTCAATATGTATAGAGGACAGGCAAGCATTGCATCAGCTGCACCTGTGAGCTAGACACGCTCGAGT GA TTGAAACATACGAAGGAGAAAATGATACTGAAAGTTCAAC TATTCTCGTGTATGATACTAGAAGCTACTGAAAGTTCGCTTCTCGTCCACCATTTTGGTCGAGGCAACAGGTCTACTGGGA]
[-] EMBL CB639063 [ CACCGCGCTGGTGAGAAGGCTGTTCACGAGGAGTGACGGTAGCAAGGAGTCGATGCTGTGGCTGGTGCTGAGGCTGCTCATTCCGGTGGTGCTGCTGGTGG CGGTCTGTGTGGCTTTATACATGCGCAGCGGACCTCCTGAAGTAGACTGCATCAACTGTTAAATTCTTGTATATTGTCGTCTACTTTACATCCGGCTGTAGAGGTCCGTCTGCCAGCTGTGCTTCACAATCGGAGTCGACTACTACTGTTCACGGT AAGTTATTT CCGTGGCTGCTGTTGTGTTCAATATGTATAGAGGACAGGCAAGCATTGCATCAGCTGCACCTGTGAGCTAGACACGTTCGAGT GA TTGAAACATACAAAGGAAAAAATGATACTGAA ]
consensusID : consensus_13841#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 653 fasta sequence
[ATGATATACCTGTGAGAATGCTATTTTCACCATTCCACCATGAGCTTGCATATGGTGAGGATGGCTCCCCTCCAGTTATCCCTCCAAATGCCACACTGCAATTTGATGTCCAGCTTATCTCCTGGGAAAGTGTCAAGGACATTTGCAAGGACGGTGGCATCTTGAATAAGGTACTAGCTGAAGGCACGAAGTGGGAGAACCCAAGAGACCGCGATGAAGTTTTTGTTAAGTATGAGGTGAGGCTTGAGGATGGGACTGTTGTAGCAGAATCTGATGGTGTCGAGTTCACCGTGAAAGATGGGCATTTCTGTCCTGCCATATCCAAGGCTGTGAAGACTATGAAGAACAATGAGAAGGCCCTCCTCACAGTCAAACCACAATATGGCTTCGGTGAGCAAGGCATGCCATCCGCTAGAGATGAAGCTGCAATACCCCCTAATGCTACATTGCACATTAATCTTGAATTGGTGTCCTGGAAGGCAGTCACTGAGATTGGTAATGATAAGAAAATCCTCAAGAAGATCCTCCATGAGGGTGAAGGCTATGAGCGTCCCAGTGATTGCACACTTGTCAGAGTGAAACTTATTGGAAAGTTAGAGGATGGTACCATATTTGTCACAAGAGGTCATGATGGTGACGAGCCATTCTAGTTT]
[+] EMBL CB661351 [ATGATATACCTGTGAGAATGCTATTTTCACCATTCCACCATGAGCTTGCATATGGTGAGGATGGCTCCCCTCCAGTTATCCCTCCAAATGCCACACTGCAATTTGATGTCCAGCTTATCTCCTGGGAAAGTGTCAAGGACATTTGCAAGGACGGTGGCATCTTGAATAAGGTACTAGCTGAAGGCACGAAGTGGGAGAACCCAAGAGACCGCGATGAAGTTTTTGTTAAGTATGAGGTGAGGCTTGAGGATGGGACTGTTGTAGCAGAATCTGATGGTGTCGAGTTCACCGTGAAAGATGGGCATTTCTGTCCTGCCATATCCAAGGCTGTGAAGACTATGAAGAACAATGAGAAGGCCCTCCTCACAGTCAAACCACAATATGGCTTCGGTGAGCAAGGCATGCCATCCGCTAGAGATGAAGCTGCAATACCCCCTAATGCTACATTGCACATTAATCTTGAATTGGTGTCCTGGAAGGCAGTCACTGAGATTGGTAATGATAAGAAAATCCTCAAGAAGATCCTCCATGAGGGTGAAGGCTATGAGCGTCCCAGTGATTGCACACTTGTCAGAGTGAAACTTATTGGAAAGTTAGAGGATGGTACCATATTTGTCACAAGAGGTCATGATGGTGACGAGCCATTCTAGTTT]
consensusID : consensus_13841#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 287 fasta sequence
[GNTAGCATTGNTNANTATTNCACCANAGTATGCGTTTGTCATGCAATGAAACAAGACAAGATTTGTTTGTTGTCCCNCCTAATTNAACNGTTTATNATGAGGTGGAGCTTGTGTCCTTCGATAAGGAGAAAGANTCATGGGACATGAAGGAGAATACTGAGAAGATTGANGCGGCTGCAAAGAAGAAAGATGAAGGGAATGCTTGGTTTAAGATGGAAAAGTATGCCAGGGCTTCTAAGAGATATGGAAAGGCTTTAANCNTCATCCAGTATGACAGCNCCTTCAGT]
[+] EMBL AU063313 [GNTAGCATTGNTNANTATTNCACCANAGTATGCGTTTGTCATGCAATGAAACAAGACAAGATTTGTTTGTTGTCCCNCCTAATTNAACNGTTTATNATGAGGTGGAGCTTGTGTCCTTCGATAAGGAGAAAGANTCATGGGACATGAAGGAGAATACTGAGAAGATTGANGCGGCTGCAAAGAAGAAAGATGAAGGGAATGCTTGGTTTAAGATGGAAAAGTATGCCAGGGCTTCTAAGAGATATGGAAAGGCTTTAANCNTCATCCAGTATGACAGCNCCTTCAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13841#0 CAAGAAGGCACGTCCCCCTTCTAGAAGCTTCCGCTAGCTTCCCATCGGCGCGGGGGGAAT 60
consensus_13841#1 ------------------------------------------------------------
consensus_13841#2 ------------------------------------------------------------
consensus_13841#0 GGACGACGACGACCTCGGCTACCCGCCCGGCATGGCCGGCCTGGACGCGATGGCCGGCCT 120
consensus_13841#1 ------------------------------------------------------------
consensus_13841#2 ------------------------------------------------------------
consensus_13841#0 CGGTGGCCTCGGCGGGATGGGCGGCCTCGGTGGGCTCGGCGGGATGGGCGGCCTTGGTGG 180
consensus_13841#1 ------------------------------------------------------------
consensus_13841#2 ------------------------------------------------------------
consensus_13841#0 GCTCGGCGGGATGGGCGGCCTCGGCGGACTGGGCGGCTTCGGCGGCGGGGGCATGGAGGA 240
consensus_13841#1 ------------------------------------------------------------
consensus_13841#2 ------------------------------------------------------------
consensus_13841#0 CCTGTACGGCGGCGGGGGAGGTGCGGGGGGGGAGGAGGGAGGGGAGGGGCCGTACGCGGC 300
consensus_13841#1 ------------------------------------------------------------
consensus_13841#2 ------------------------------------------------------------
consensus_13841#0 GGAGATGGAGGTCGGGGAGGAGAAGGAGATCGGGAAGGAGGGGCTCAGGAAGAAGCTGGT 360
consensus_13841#1 ------------------------------------------------------------
consensus_13841#2 ------------------------------------------------------------
consensus_13841#0 GAAGGAGGGCGAGGGGTGGGAGCGCCCCGACGCCGGCGACGAGGTCCAAGTGCACTACAC 420
consensus_13841#1 ------------------------------------------------------------
consensus_13841#2 ------------------------------------------------------------
consensus_13841#0 GGGGACGCTGTTGGATGGCACCAAGTTCGATTCCAGCCGGGATCGCGATGCTCCGTTCAA 480
consensus_13841#1 ------------------------------------------------------------
consensus_13841#2 ------------------------------------------------------------
consensus_13841#0 GTTCACCCTGGGCCAAGGCCAAGTTATTAAGGGATGGGATTTGGGCATTAAGACCATGA- 539
consensus_13841#1 -------------------------------------------------------ATGAT 5
consensus_13841#2 ------------------------------------------------------------
consensus_13841#0 AGAAAGGTGAGAATGCTATTTTCACCATTCCACCA-GAGCTTG-CATATGGTGAGGATGG 597
consensus_13841#1 ATACCTGTGAGAATGCTATTTTCACCATTCCACCATGAGCTTG-CATATGGTGAGGATGG 64
consensus_13841#2 -----GNTAGCATTGNTNANTATTNCACCANAGTATGCGTTTGTCATGCAATGAAACAAG 55
* * ** * * ** * * * * *** *** *** *
consensus_13841#0 CTCCCCTCCA---GTTATCCCTCCAAATGCCACGCTGCAGTTTGATGTCGAGCTTATCTC 654
consensus_13841#1 CTCCCCTCCA---GTTATCCCTCCAAATGCCACACTGCAATTTGATGTCCAGCTTATCTC 121
consensus_13841#2 ACAAGATTTGTTTGTTGTCCCNCCTAATTNAACNGTTTATNATGAGGTGGAGCTTGTGTC 115
* *** **** ** *** ** * * *** ** ***** * **
consensus_13841#0 CTGGGAAAGTGTCAAGGACATTTGCAAGGACGGTGGCATCTTGAAGAAGGTACTAGCTGA 714
consensus_13841#1 CTGGGAAAGTGTCAAGGACATTTGCAAGGACGGTGGCATCTTGAATAAGGTACTAGCTGA 181
consensus_13841#2 CTTCGA------TAAGGA-----GAAAGANTCATGGGACATGAAGGAGAATACTGA--GA 162
** ** ***** * *** *** * * * * **** **
consensus_13841#0 AGGCACGAAGTGGGAGAACCCAAGAGACCGCGATGAAGTTTTTGTTAAGTATGAGGTGAG 774
consensus_13841#1 AGGCACGAAGTGGGAGAACCCAAGAGACCGCGATGAAGTTTTTGTTAAGTATGAGGTGAG 241
consensus_13841#2 AGAT-TGANGCGGCTGCAAAGAAGAAA----GATGAAGGGAATGCTTGGTTTAAGATGGA 217
** ** * ** * * **** * ******* ** * ** * ** **
consensus_13841#0 GCTTGAGGATGGGACTGTTGTAGCAGAATCTGATGGTGTCGAG-TTCACCGTGAAAGATG 833
consensus_13841#1 GCTTGAGGATGGGACTGTTGTAGCAGAATCTGATGGTGTCGAG-TTCACCGTGAAAGATG 300
consensus_13841#2 AAAGTATGCCAGGGCTTCTA-AGAGATATGGAAAGGCTTTAANCNTCATCCAGTATGACA 276
* * ** ** * ** ** * ** * * *** * * * **
consensus_13841#0 GGCATTTCTGTCCTGCCATATCCAAGGCTGTGAAGACTATGAAGAAGAATGAGAAGGCCC 893
consensus_13841#1 GGCATTTCTGTCCTGCCATATCCAAGGCTGTGAAGACTATGAAGAACAATGAGAAGGCCC 360
consensus_13841#2 GCNCCTTCAGT------------------------------------------------- 287
* *** **
consensus_13841#0 TCCTCACAGTCAAACCACAATATGGCTTCGGTGAGCAAGGCAGGTCAGCCGCTAGAGATG 953
consensus_13841#1 TCCTCACAGTCAAACCACAATATGGCTTCGGTGAGCAAGGCATGCCATCCGCTAGAGATG 420
consensus_13841#2 ------------------------------------------------------------
consensus_13841#0 AAGCTGCAATACCCCCTAATGCTACATTGCACATTAATCTTGAATTGGTGTCCTGGAAGG 1013
consensus_13841#1 AAGCTGCAATACCCCCTAATGCTACATTGCACATTAATCTTGAATTGGTGTCCTGGAAGG 480
consensus_13841#2 ------------------------------------------------------------
consensus_13841#0 CAGTCACTGAGATTGGTAATGATAAGAAAATCCTCAAGAAGATCCTCCATGAGGGTGAAG 1073
consensus_13841#1 CAGTCACTGAGATTGGTAATGATAAGAAAATCCTCAAGAAGATCCTCCATGAGGGTGAAG 540
consensus_13841#2 ------------------------------------------------------------
consensus_13841#0 GCTATGAGCGTCCCAGTGATTGCACACTTGTCAGAGTGAAACTTATTGGAAAGTTAGAGG 1133
consensus_13841#1 GCTATGAGCGTCCCAGTGATTGCACACTTGTCAGAGTGAAACTTATTGGAAAGTTAGAGG 600
consensus_13841#2 ------------------------------------------------------------
consensus_13841#0 ATGGTACCATATTTGTCACAAGAGGTCATGATGGTGACGAGCCATTCGAGTTTAAGACTG 1193
consensus_13841#1 ATGGTACCATATTTGTCACAAGAGGTCATGATGGTGACGAGCCATTCTAGTTT------- 653
consensus_13841#2 ------------------------------------------------------------
consensus_13841#0 ATGAAGACCAAGTGGTTGAAGGGCTTGACAAAGCAGTACTTAGCATGAAGAAAGGAGAAG 1253
consensus_13841#1 ------------------------------------------------------------
consensus_13841#2 ------------------------------------------------------------
consensus_13841#0 TTGCATTGGTGACTATTCCACCAGAGTATGCGTTTGGATCTGATGAAACAAGACAAGATT 1313
consensus_13841#1 ------------------------------------------------------------
consensus_13841#2 ------------------------------------------------------------
consensus_13841#0 TGTCTGTTGTCCCTCCTAATTCAACTGTTTATTATGAGGTGGAGCTTGTGTCCTTCGATA 1373
consensus_13841#1 ------------------------------------------------------------
consensus_13841#2 ------------------------------------------------------------
consensus_13841#0 AGGAGAAAGAATCATGGGACATGAAGGAGAATACTGAGAAGATTGAAGCGGCTGCAAAGA 1433
consensus_13841#1 ------------------------------------------------------------
consensus_13841#2 ------------------------------------------------------------
consensus_13841#0 AGAAAGATGAAGGGAATGCTTGGTTTAAGATGGAAAAGTATGCCAGGGCTTCTAAGAGAT 1493
consensus_13841#1 ------------------------------------------------------------
consensus_13841#2 ------------------------------------------------------------
consensus_13841#0 ATGGAAAGGCTTTAAACTTCATCCAGTATGACAGCTCCTTCAGTGAAGAAGAGAAGCAGC 1553
consensus_13841#1 ------------------------------------------------------------
consensus_13841#2 ------------------------------------------------------------
consensus_13841#0 TGTCCAAACCACTCAAGGTGAGTTGCAAGCTCAACAATGCTGCATGTAAGCTGAAGCTTA 1613
consensus_13841#1 ------------------------------------------------------------
consensus_13841#2 ------------------------------------------------------------
consensus_13841#0 AAGACTACAAGGAAGCAAAGGAACTGTGTACTGAGGTCCTGGAGCTTGACAGCATGAATG 1673
consensus_13841#1 ------------------------------------------------------------
consensus_13841#2 ------------------------------------------------------------
consensus_13841#0 TGAAGGCTTTTTACAGAAGGGCACAGGCACACATGTATCTTGTTGACTTTGATTTGGCAG 1733
consensus_13841#1 ------------------------------------------------------------
consensus_13841#2 ------------------------------------------------------------
consensus_13841#0 AACTGGATATCAAGAAAGCACTAGAAATAGATCCAGACAACAGGGATGTGAAGATGGGGT 1793
consensus_13841#1 ------------------------------------------------------------
consensus_13841#2 ------------------------------------------------------------
consensus_13841#0 ACAGGAGGCTGAAGGAGAAGGTCAAGGAGCAGAAGAGGAAGGAAACGAAATTGTACGGCA 1853
consensus_13841#1 ------------------------------------------------------------
consensus_13841#2 ------------------------------------------------------------
consensus_13841#0 ACATGATTTCGAAGCTAAGCAAGCTTGAAGACTCGGAAACCGAAGGAGGCACAACTCAGG 1913
consensus_13841#1 ------------------------------------------------------------
consensus_13841#2 ------------------------------------------------------------
consensus_13841#0 CGCCAAGCAAGAAGCATGGCCTATGGCCACTCACCGCGCTGCTGAGAAGGCTGTTCACGA 1973
consensus_13841#1 ------------------------------------------------------------
consensus_13841#2 ------------------------------------------------------------
consensus_13841#0 GGAGTGACGGTAGCAAGGAGTCGATGCTGTGGCTGGTGCTGAGGCTGCTCATTCCGGTGG 2033
consensus_13841#1 ------------------------------------------------------------
consensus_13841#2 ------------------------------------------------------------
consensus_13841#0 TGCTGCTGGTGGCGGTCTGTGTGGCTTTCTACATGCGCAGCGGACCTCCTGAAGTAGACT 2093
consensus_13841#1 ------------------------------------------------------------
consensus_13841#2 ------------------------------------------------------------
consensus_13841#0 GCATCAACTGTTAAATTCTTGTATATTGTCGTCTACTTTACATCCGGCTGTAGAGGTCCG 2153
consensus_13841#1 ------------------------------------------------------------
consensus_13841#2 ------------------------------------------------------------
consensus_13841#0 TCTGCCAGCTGTGCTTCACAATCGGAGTCGACTACTACTGTTCACGGTAAGTTATTTCCG 2213
consensus_13841#1 ------------------------------------------------------------
consensus_13841#2 ------------------------------------------------------------
consensus_13841#0 TGGCTGCTGTTGTGTTCAATATGTATAGAGGACAGGCAAGCATTGCATCAGCTGCACCTG 2273
consensus_13841#1 ------------------------------------------------------------
consensus_13841#2 ------------------------------------------------------------
consensus_13841#0 TGAGCTAGACACGTTCGAGTGATTGAAACATACAAAGGAAAAAATGATACTGAAAGTTCA 2333
consensus_13841#1 ------------------------------------------------------------
consensus_13841#2 ------------------------------------------------------------
consensus_13841#0 AAAAAAAAGGAATGATACTAGAAGCTACTGAAAGTTCGCTTCTCGTCCACCATTTTGGTC 2393
consensus_13841#1 ------------------------------------------------------------
consensus_13841#2 ------------------------------------------------------------
consensus_13841#0 GAGGCAACAGGTCTACTGGGA 2414
consensus_13841#1 ---------------------
consensus_13841#2 ---------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||