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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13845#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1800 fasta sequence
[GGCTGGGACAACCTTAGGGGCATCTCTCCACGATTTTATCTCATCCGTTTGGCCCTGCTGCTGCTGTGCTGCCCCTTCTCTAGGGTTTTGACTCCTAAACCGCCGCCCCCGTCCTCCCGCGCCGCCATGATGCAGCCGCCGCCGCCGCCGCAGTGGGCAATGGGGCCGCCGCCTCCTCCGCAGTACTTCCAGGCTGGCCCTCCGCCGCCGCCGCCACAGTACTTCCAGGGGGCGCATCCACCCGCTGCCATGTGGGGCCAGCCCCCGCCGCCGCAGGCTG-CCCCTCCGCCGGCGCCGGCTGGTGGCGCAGCAGGGGACGAGGTGAGGACCCTGTGGATCGGCGACCTCCAGTTCTGGATGGAAGAGAACTACCTGTACAACTGC-TTCTCCCAGGCCGGCGAGCTTATCTCAGCAAAGATAATTCGGAACAAGCAAACTGGGCAACCTGAGGGTTATGGTTTCATTGAATTTGGCAGCCATGCTATAGCCGAACAAGTTCTGCAAGGCTATAATGGTCAAATGATGCCTAATGGTAATCAGGTTTTCAAATTAAATTGGGCGACAAGTGGTGCTGGCGAGAAGCGTGGAGATGATGGCTCAGATTATACTATATTTGTTGGGGATCTCGCCTCGGATGTTACAGATTTAATTCTTCAAGATACATTCAAGGCCCATTACCAATCAGTTAAGGGTGCAAAAGTTGTCTTTGACAGAAGTACTGGTCGTTCAAAAGGCTATGGATTTGTTAAGTTTGGAGATTTGGATGAACAGACACGTGCAATGACTGAAATGAATGGACAATATTGTTCTAGCAGGCCTATGCGTATTGGACCAGCATCCAACAAGAAAAATATAGGTGGCCAACAACAACCAAGTGCTACATACCAGAATACACAAGGAACAGATTCTGATAGCGATCCAAACAATACTACTGTATTTGTTGGTGGTCTTGATCCAAGTGTGACTGATGAGGTTCTGAAACAAGCCTTCAGTCCATATGGAGAACTTGTCTACGTCAAAATACCTGTAGGAAAGCGTTGTGGATTTGTTCAATATTCCAATAGGGCTTCAGCTGAGGAGGCCATAAGGATGCTAAATGGAAGCCAA-TTAGGAGGTCAGAGCATAAGGCTTTCATGGGGTCGTAGCCCTGGAAACAAGCAGCCTCAGCAAGACCAGAACCAATGGAATGCTGGCTATTATGGATATCCCCCCCAAGGATATGATCCATATGGTTATGTTCGGCCGCCTCAAGATCCTGCCATGTACGCTTATGCAGCATATCCTGGATACGGGAATTATCAACAACCAGCGCCACAGCAGCCCCCTCAACAGTAAGAACAAGTGTTGGTCAAGTGCCCTATCACAACATATGATG-AAATAGTTTTGGCAACTTTGGTGTAATTGGCATGAAAATTTTTTGAACTGTTGCTTGTGCTATCTTTGTTGAACGTCGTGTGCACGCCCA-GCCTATGTTGTAACATGACATTTTACTGAGGCCTAGGTGACACTAGAATGACAGCTTTT-AGGGA-GGGAGTATTGGAGTGAACA-TTTTTCGCTTGCTCAAAAAGTTTTGTCGCCATGGGTACCATTAGAAGAGGAGTTGAGCAAGAAATAAT-AAGTTTGTAACATTAGACATCGGCGTACATTTTAATCGGGCACTTTGGTATTATTGCACTGGAGCCGTTTTCTGTTTGCGTCCCTAAATAATCCTGCTTTGAGCCGGTGACTGGATGATGTTGGCAGCATTCCATTGAACTGAAGTGTTGATTTGATTTTTATCAAAAAAAAAAACAAAAAAAA]
[+] EMBL AK101593 [GGCTGGGACAACCTTAGGGGCATCTCTCCACGATTTTATCTCATCCGTTTGGCCCTGCTGCTGCTGTGCTGCCCCTTCTCTAGGGTTTTGACTCCTAAACCGCCGCCCCCGTCCTCCCGCGCCGCCATGATGCAGCCGCCGCCGCCGCCGCAGTGGGCAATGGGGCCGCCGCCTCCTCCGCAGTACTTCCAGGCTGGCCCTCCGCCGCCGCCGCCACAGTACTTCCAGGGGGCGCATCCACCCGCTGCCATGTGGGGCCAGCCCCCGCCGCCGCAGGCTG CCCCTCCGCCGGCGCCGGCTGGTGGCGCAGCAGGGGACGAGGTGAGGACCCTGTGGATCGGCGACCTCCAGTTCTGGATGGAAGAGAACTACCTGTACAACTGC TTCTCCCAGGCCGGCGAGCTTATCTCAGCAAAGATAATTCGGAACAAGCAAACTGGGCAACCTGAGGGTTATGGTTTCATTGAATTTGGCAGCCATGCTATAGCCGAACAAGTTCTGCAAGGCTATAATGGTCAAATGATGCCTAATGGTAATCAGGTTTTCAAATTAAATTGGGCGACAAGTGGTGCTGGCGAGAAGCGTGGAGATGATGGCTCAGATTATACTATATTTGTTGGGGATCTCGCCTCGGATGTTACAGATTTAATTCTTCAAGATACATTCAAGGCCCATTACCAATCAGTTAAGGGTGCAAAAGTTGTCTTTGACAGAAGTACTGGTCGTTCAAAAGGCTATGGATTTGTTAAGTTTGGAGATTTGGATGAACAGACACGTGCAATGACTGAAATGAATGGACAATATTGTTCTAGCAGGCCTATGCGTATTGGACCAGCATCCAACAAGAAAAATATAGGTGGCCAACAACAACCAAGTGCTACATACCAGAATACACAAGGAACAGATTCTGATAGCGATCCAAACAATACTACTGTATTTGTTGGTGGTCTTGATCCAAGTGTGACTGATGAGGTTCTGAAACAAGCCTTCAGTCCATATGGAGAACTTGTCTACGTCAAAATACCTGTAGGAAAGCGTTGTGGATTTGTTCAATATTCCAATAGGGCTTCAGCTGAGGAGGCCATAAGGATGCTAAATGGAAGCCAA TTAGGAGGTCAGAGCATAAGGCTTTCATGGGGTCGTAGCCCTGGAAACAAGCAGCCTCAGCAAGACCAGAACCAATGGAATGCTGGCTATTATGGATATCCCCCCCAAGGATATGATCCATATGGTTATGTTCGGCCGCCTCAAGATCCTGCCATGTACGCTTATGCAGCATATCCTGGATACGGGAATTATCAACAACCAGCGCCACAGCAGCCCCCTCAACAGTAAGAACAAGTGTTGGTCAAGTGCCCTATCACAACATATGATG AAATAGTTTTGGCAACTTTGGTGTAATTGGCATGAAAATTTTTTGAACTGTTGCTTGTGCTATCTTTGTTGAACGTCGTGTGCACGCCCA GCCTATGTTGTAACATGACATTTTACTGAGGCCTAGGTGACACTAGAATGACAGCTTTT AGGGA GGGAGTATTGGAGTGAACA TTTTTCGCTTGCTCAAAAAGTTTTGTCGCCATGGGTACCATTAGAAGAGGAGTTGAGCAAGAAATAAT AAGTTTGTAACATTAGACATCGGCGTACATTTTAATCGGGCACTTTGGTATTATTGCACTGGAGCCGTTTTCTGT ]
[+] EMBL AU181201 [ CTCCTAAACCGCCGCCCCCGTCCTCCCGCGCCGCCATGATGCAGCCGCCGCCGCCGCCGCAGTGGGCAATGGGGCCGCCGCCTCCTCCGCAGTACTTCCAGGCTGGCCCTCCGCCGCCGCCGCCACAGTACTTCCAGGGGGCGCATCCACCCGCTGCCATGTGGGGCCAGCCCCCGCCGCCGCAGGCTG CCCCTCCGCCGGCGCCGGCTGGTGGCGCAGCAGGGGACGAGGTGAGGACCCTGTGGATCGGCGACCTCCAGTTCTGGATGGAAGAGAACTACCTGTACAACTGC TTCTCCCAGGCCGGCGAGCTTATCTCAGCAAAGATAATTCGGAACAAGCAAACTGGGCAACCTGAGGGTTATGGTTTCATTGAATTTGGCAGCCATGCTATAGCCGAACAAGTTCTGCAAGGNTATAATGGNCA ]
[+] EMBL AU068995 [ TCCTAAACCGCCGCCCCCGTCCTCCCGCGCCGCCATGATGCAGCCGCCGCCGCCGCCGCAGTGGGCAATGGGGCCGCCGCCTCCTCCGCAGTACTTCCAGGCTGGCCCTCCGCCGCCGCCCCCACAGTACTTCCAGGGGGCGCATCCACCCGCTGCCATGTGGGGCCAGCCCCCGCCGCCGCAG TGNCCCCTCCGCCGGCGCCGGCTGGTGGCGCAG AGGGGACGAGGTGAGGACCCTGTGGATCGGCGACCTCCAGTTCTGGATGGAAGAGAACTACCTGTACAACTGCTTTCTCCCAGGCCGGCGAGCTTATCTCAGCAAAGATAATTCGGAACAAGCAAACTTGGCAANCTGAGGGTTATGGTTTCATTGAATTTGGCAG CATNCTATAG CGAACAAGTTTTNCAAGGCTATAATGGTC AATGATG CTAATGGTAATn ]
[+] EMBL CB618903 [ TAAACCGCCGCCCCCGTCCTCCCGCGCCGCCATGATGCAGCCGCCGCCGCCGCCGCAGTGGGCAATGGGGCCGCCGCCTCCTCCGCAGTACTTCCAGGCTGGCCCTCCGCCGCCGCCGCCACAGTACTTCCAGGGGGCGCATCCACCCGCTGCCATGTGGGGCCAGCCCCCGCCGCCGCAGGCTG CCCCTCCGCCGGCGCCGGCTGGTGGCGCAGCAGGGGACGAGGTGAGGACCCTGTGGATCGGCGACCTCCAGTTCTGGATGGAAGAGAACTACCTGTACAACTGC TTCTCCCAGGCCGGCGAGCTTATCTCAGCAAAGATAATTCGGAACAAGCAAACTGGGCAACCTGAGGGTTATGGTTTCATTGAATTTGGCAGCCATGCTATAGCCGAACAAGTTCTGCAAGGCTATAATGGTCAAATGATGCCTAATGGTAATCAGGTTTTCAAATTAAATTGGGCGACAAGTGGTGCTGGCGAGAAGCGTGGAGATGATGGCTCAGATTATACTATATTTGTTGGGGATCTCGCCTCGGATGTTACAGATTTAATTCTTCAAGATACATTCAAGGCCCATTACCAGTCAGTTAAGGGTGCAAAAGTTGTCTTTGACAGAAGTACTGGTCGTTCAAAAGGCTATGGATTTGTTAAGTTTGGAGATTTGGATGAACAGACACGTGCAATGACTGAAATGAATGGACAATATTGTTCTAGCAGGCCTATGCGTATTGGACCAGCATCCAACAAGAAAAATATAGGTGGCCAACAACAA ]
[+] EMBL OSR20782A [ ATGGTTTCATTGAATTTGGCAGCCATGCTATAGCCGAACAAGTTCTGCAAGGCTATAATGGTCAAATGATGCCTAATGGTAATCAGGTTTTCAAATTAAATTGGGCGACAAGTGGTGCTGGCGAGAAGCGTGGAGATGATGGCTCAGATTATACTATATTTGTTGGGGATCTCGCCTCGGATGTTACAGATTTAATTCTTCAAGATACATTCAAGGCCCATTACCAATCAGTTAAGGGTGCAAAAGTTGTCTTTGACAGAAGTACTGGTCGTTCAAAAGGCTATGGATTTGTTAAGTTTGGAGATTTGGATGAACAGACACG ]
[+] EMBL CA767095 [ TAAGTTTGGAGATTTGGATGAACAGACACGTGCAATGACTGAAATGAATGGACAATATTGTTCTAGCAGGCCTATGCGTATTGGACCAGCATCCAACAAGAAAAATATAGGTGGCCAACAACAACCAAGTGCTACATACCAGAATACACAAGGAACAGATTCTGATAGCGATCCAAACAATACTACTGTATTTGTTGGTGGTCTTGATCCAAGTGTGACTGATGAGGTTCTGAAACAAGCCTTCAGTCCATATGGAGAACTTGTCTACGTCAAGATACCTGTAGGAAAGCGTTGTGGATTTGTTCAATATTCCAATAGGGCTTCAGCTGAGGAGGCCATAAGGATGCTAAATGGAAGCCAA TTAGGAGGTCAGAGCATAAGGCTTTCATGGGGTCGTAGCCCTGGAAACAAGCAGCCTCAGCAAGACCAGAACCAATGGAATGCTGGCTATTATGGATATCCCCCCCAAGGATATGATCCATATGGTTATGCTCGGCCGCCTCAAGATCCTGCCATGTACGCTTATGCAGCATATCCTGGATACGGGAATTATCAACAACCAGCGCCACAGCAGCCCCCTCAACAGTAAGAACAAGTGTTGGTCAAGTGCCCTATCACAACATATGATG AAATAGTTTTGGCAACTTTGGTGTAATTGGCATGAAAA TTTTTGAACTGGTGCTTGNGCTATCTTTGNTGAACGTCGNGTGCACGCCCA GCCTATGNTGTAACATGACATTTTACTGAGGCCTAGGTGACACTAGAATGACAGCTTTTAAGGGA GGGAGTNTTGGAGGGNACATTTTTTCNCTTGCTTAAAAAGTTTTGTCGCCATGGGTACCATTANAANAGGA ]
[-] EMBL CB618904 [ TTGGTGGTCTTGATCCAAGTGTGACTGATGAGGTTCTGAAACAAGCCTTCAGTCCATATGGAGAACTTGTCTACGTCAAGATACCTGTAGGAAAGCGTTGTGGATTTGTTCAATATTCCAATAGGGCTTCAGCTGAGGAGGCCATAAGGATGCTAAATGGAAGCCAA TTAGGAGGTCAGAGCATAAGGCTTTCATGGGGTCGTAGCCCTGGAAACAAGCAGCCTCAGCAAGACCAGAACCAATGGAATGCTGGCTATTATGGATATCCCCCCCAAGGATATGATCCATATGGTTATGCTCGGCCGCCTCAAGATCCTGCCATGTACGCTTATGCAGCATATCCTGGATACGGGAATTATCAACAACCAGCGCCACAGCAGCCCCCTCAACAGTAAGAACAAGTGTTGGTCAAGTGCCCTATCACAACATATGATG AAATAGTTTTGGCAACTTTGGTGTAATTGGCATGAAAATTTTTTGAACTGTTGCTTGTGCTATCTTTGTTGAACGTCGTGTGCACGCCCA GCCTATGTTGTAACATGACATTTTACTGAGGCCTAGGTGACACTAGAATGACAGCTTTT AGGGA GGGAGTATTGGAGTGAACA TTTTTCGCTTGCTCAAAAAGTTTTGTCGCCATGGGTACCATTAGAAGAGGAGTTGAGCAAGAAATAAT AAGTTTGTAACATTAGACATCGGCGTACATTTTAATCGGGCACTTTGGTATTATTGCACTGGAGCCGTTTTCTGTTTGCGTCCCTAAA ]
[+] EMBL AU181202 [ GATGAGGTTNTGAACCAAGCCTTCAGTCCATATGGAGAACTTGTNTACGTCAAAATACCTGTAGGAAAGCGTTGTGGATTTGTTCAATATTCCAATAGGGCTTCAGCTGAGGAGGCCATAAGGATGCTAAATGGAAGCCAA TTAGGAGGTCAGAGCATAAGGCTTTCATGGGGTCGTAGCCCTGGAAACAAGCAGCCTCAGCAAGACCAGAACCAATGGAATGCTGGCTATTATGGATATCCCCCCCAAGGATATGATCCATATGGTTATGTTCGGCCGCCTCAAGATCCTGCCATGTACGCTTATGCAGCATATCCTGGATACGGGAATTATCAACAACCAGCGCCACAGCAGCCCCCTCAACAGTAAGAACAAGTGTTGGTCAAGTGCCCTATCACAACATATGATG AAATAGTTTTGGCAAaaaa ]
[-] EMBL CB682166 [ GCCTTCAGTCCATATGGAGAACTTGTCTACGTCAAAATACCTGTAGGAAAGCGTTGTGGATTTGTTCAATATTCCAATAGGGCTTCAGATGAGGAGGCCATAAGGATGCTAAATGGAAGCCAA TTAGGAGGTCAGAGCATAAGGCTTTCATGGGGTCGTAGCCCTGGAAACAAGCAGCCTCAGCAAGACCAGAACCAATGGAATGCTGGCTATTATGGATATCCCCCCCAAGGATATGATCCATATGGTTATGTTCGGCCGCCTCAAGATCTTGCCATGTACGCTTATGCAGCATATCCTGGATACGGGAATTATCAACAACCAGCGCCACAGCAGCCCCCTCAACAGTAAGAACAAGTGTTGGTCAAGTGCCCTATCACAACATATGATG AAATAGTTTTGGCAACTTTGGTGTAATTGGCATGAAAATTTTTTGAACTGTTGCTTGTGCTATCTTTGTTGAACGTCGTGTGCACGCCCACGCCTATGTTGTAACATGACATTTTACTGAGGCTTAGGT CCATTAGAATGACAGCTTTT AGGGA GGGAGTATTGGAGTGAACA TTTTTCGCTTGCTCAAAAAGTTTTGTCGCCATGGGTACCATTTGAAGGGGAGTTGAGCAAGCAAa ]
[-] EMBL CA759175 [ TCAGTCCATATGGAGAACTNGTCTACGTCAAGATACCTGTAGGAAAGCGTGNTGGATTTGTTCAATATTCCAATAGGGCTTCAGCTGAGGAGGCCATAAGGATGCTAAATGGAAGCCAA TTAGGAGGTCAGAGCATAAGGCTTTCATGGGGTCGTAGCCCTGGAAACAAGCAGCCTCAGCAAGACCAGAACCAATGGAATGCTGGCTATTATGGATATCCCCCCCAAGGATATGATCCATATGGTTATGCTCGGCCGCCTCAAGATCCTGCCATGTACGCTTATGCAGCATATCCTGGATACGGGAATTATCAACAACCAGCGCCACAGCAGCCCCCTCAACAGTAAGAACAAGTGTTGGTCAAGTGCCCTATCACAACATATGATG AAATAGTTTTGGCAACTTTGGTGTAATTGGCATGAAAATTTTTTGAACTGTTGCTTGTGCTATCTTTGTTGAACGTCGTGTGCACGCCCA GCCTATGTTGTAACATGACATTTTACTGAGGCCTAGGTGACACTAGAATGACAGCTTTT AGGGA GGGAGTATTGGAGTGAACA TTTTTCGCTTGCTCAAAAAGTTTTGTCGCCATGGGTACCATTAGAAGAGGAGTTGAGCAAGAAATAAT AAGTTTGTAACATTAGACATCGGCGTACATTTTAATCGGGCACTTTGGTATTATTGCAaaaaaa ]
[+] EMBL AU101566 [ ACGTC AAATACCTGTAGGAAAGCGTTGTNGATTTGTTCAATATTCCAATAGGGCTTCAGCTGAGGAGGCCATAAGGATGCTAAATGGAAGCCAATTTAGGAGGTCAGAGCATAAGGCTTTCATGGGGTCGTAGCCCTGGAAACAAGCAGCCTCAGCAAGACCAGAACCAATGGAATGCTGGCTATTATGGATATCCCCCCCAAGGATATGATCCATATGGTTATGTTCGGCCGCCTCAAGATCCTGCCATGTACGCTTATGCAGCATATCCTGGATACGGGAATTATCAACAACCAGCGCCACAGCAGCCCCCTCAACAGTAAGAACAAGTGTTGGTCAAGTGCCCTATCACAACATATGATGAAAATAGTTTTGGCAACTTTGGTGTAATTGGCATGAAAA TTTTTGAACTGTTGCTTGTGCTATCTTTGTTGAACGTCGTGTGCACGCCCA GCCTATGTTGTAACATGACATTTTACTGAGGCCTANGTGACACTAGAATGACAGCTTTT AGGGAGGGGAGTATTGGAGTGACCA TTTTTCGCTTGCTCAAAAAGTTTTGTCGCCATGGGTACCATTAGAAGAGGAGTNGAGCAAGAAATAATAAAGTTTGTNACATTAGACATCGGCGGACATTTTAATCGGGCACTTTGGTAT ]
[+] EMBL AU101567 [ TATCACAACATATGATG AAATAGTTTTGGCAACTTTGGTGTAATTGGCATGAAAATTTTTTGAACTGTTGCTTGTGCTATCTTTGTTGAACGTCGTGTGCACGCCCA GCCTATGTTGTAACATGACATTTTACTGAGGCCTAGGTGACACTAGAATGACAGCTTTT AGGGA GGGAGTATTGGAGTGAACA TTTTTCGCTTGCTCAAAAAGTTTTGTCGCCATGGGTACCATTAGAAGAGGAGTTGAGCAAGAAATAAT AAGTTTGTAACATTAGACATCGGCGTACATTTTAATCGGGCACTTTGGTATTATTGCACTGGAGCCGTTTTCTGTTTGCGTCCCTAGTTAATCCTGCTTTGAGCCGGTGACTGGATGATGTTGGCAGCATTCCATTGAACTGAAGTGTTGATTTGATTTTTATCAAAAAAAAAAACAAAAAAAA]
consensusID : consensus_13845#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1065 fasta sequence
[GCCCCCGTCCTCCCGCGCCGCCATGATGCAGCCGCCGCCGCCGCCGCAGTGGGCAATGGGGCCGCCGCCTCCTCCGCAGTACTTCCAGGCTGGCCCTCCGCCGCCGCCGCCACAGTACTTCCAGGGGGCGCATCCACCCGCTGCCATGTGGGGCCAGCCCCCGCCGCCGCAGGCTGCCCCTCCGCCGGCGCCGGCTGGTGGCGCAGCAGGGGACGAGGTGAGGACCCTGTGGATCGGCGACCTCCAGTTCTGGATGGAAGAGAACTACCTGTACAACTGCTTCTCCCAGGCCGGCGAGCTTATCTCAGCAAAGATAATTCGGAACAAGCAAACTGGGCAACCTGAGGGTTATGGTTTCATTGAATTTGGCAGCCATGCTATAGCCGAACAAGTTCTGCAAGGCTATAATGGTCAAATGATGCCTAATGGTAATCAGGTTTTCAAATTAAATTGGGCGACAAGTGGTGCTGGCGAGAAGCGTGGAGATGATGGCTCAGATTATACTATATTTGTTGGGGATCTCGCCTCGGATGTTACAGATTTGATTCTTCAAGATACATTCAAGGCCCATTACCAATCAGTTAAGGGTGCAAAAGTTGTCTTTGACAGAAGTACTGGTCGTTCAAAAGGCTATGGATTTGTTAAGTTTGGAGATTTGGATGAACAGACACGTGCAATGACTGAAATGAATGGACAATATTGTTCTAGCAGGCCTATGCGTATTGGACCAGCATCCAACAAGGAAAATATAGGTGGCCAACAACAACCAAGTGGTAAAGCTTTCTTTCACAGCTAGTTCCTACTTTTGAATATTTCATTAGAAATGTAAACATTTTATTCAGTGAGATGATATGATAATTCGCAATAGATCAAGCATTTTTGTGCTACTTGCTGTTTATCATAACATTGTTTGCTTGGAAAGAAGGGACCGTGTTCCTTGTTTCGATGGTTATGGTCGAAGTCTAGAGTGTCACTTCGATAGTTAGGTAGTTTAGTTGATATGCAATGTTTTAGTGTGGCTGTACTAAAAACTGCAACATCTGCAATTTGGAATGTTTGGTCAAC]
[+] EMBL AK119985 [GCCCCCGTCCTCCCGCGCCGCCATGATGCAGCCGCCGCCGCCGCCGCAGTGGGCAATGGGGCCGCCGCCTCCTCCGCAGTACTTCCAGGCTGGCCCTCCGCCGCCGCCGCCACAGTACTTCCAGGGGGCGCATCCACCCGCTGCCATGTGGGGCCAGCCCCCGCCGCCGCAGGCTGCCCCTCCGCCGGCGCCGGCTGGTGGCGCAGCAGGGGACGAGGTGAGGACCCTGTGGATCGGCGACCTCCAGTTCTGGATGGAAGAGAACTACCTGTACAACTGCTTCTCCCAGGCCGGCGAGCTTATCTCAGCAAAGATAATTCGGAACAAGCAAACTGGGCAACCTGAGGGTTATGGTTTCATTGAATTTGGCAGCCATGCTATAGCCGAACAAGTTCTGCAAGGCTATAATGGTCAAATGATGCCTAATGGTAATCAGGTTTTCAAATTAAATTGGGCGACAAGTGGTGCTGGCGAGAAGCGTGGAGATGATGGCTCAGATTATACTATATTTGTTGGGGATCTCGCCTCGGATGTTACAGATTTGATTCTTCAAGATACATTCAAGGCCCATTACCAATCAGTTAAGGGTGCAAAAGTTGTCTTTGACAGAAGTACTGGTCGTTCAAAAGGCTATGGATTTGTTAAGTTTGGAGATTTGGATGAACAGACACGTGCAATGACTGAAATGAATGGACAATATTGTTCTAGCAGGCCTATGCGTATTGGACCAGCATCCAACAAGGAAAATATAGGTGGCCAACAACAACCAAGTGGTAAAGCTTTCTTTCACAGCTAGTTCCTACTTTTGAATATTTCATTAGAAATGTAAACATTTTATTCAGTGAGATGATATGATAATTCGCAATAGATCAAGCATTTTTGTGCTACTTGCTGTTTATCATAACATTGTTTGCTTGGAAAGAAGGGACCGTGTTCCTTGTTTCGATGGTTATGGTCGAAGTCTAGAGTGTCACTTCGATAGTTAGGTAGTTTAGTTGATATGCAATGTTTTAGTGTGGCTGTACTAAAAACTGCAACATCTGCAATTTGGAATGTTTGGTCAAC]
consensusID : consensus_13845#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 757 fasta sequence
[TGGATGAACAGACACGTGCAATGACTGAAATGAATGGACAATATTGTTCTAGCAGGCCTATGCGTATTGGACCAGCATCCAACAAGAAAAATATAGGTGGCCAACAACAACCAAGTGCTACATACCAGAATACACAAGGAACAGATTCTGATAGCGATCCAAACAATACTACTGTATTTGTTGGTGGTCTTGATCCAAGTGTGACTGATGAGGTTCTGAAACAAGCTTTCAGTCCATATGGAGAACTTGTCTACGTCAAAATACCTGTAGGAAAGCGTTGTGGATTTGTTCAATATTCCAATAGGGCTTCAGCTGAGGAGGCCATAAGGATGCTAAATGGAAGCCAATTAGGAGGTCAGAGCATAAGGCTTTCATGGGGTCGTAGCCCTGGAAACAAGCAGCCTCAGCAAGACCAGAACCAATGGAATGCTGGCTATTATGGATATCCCCCCCAAGGATATGATCCATATGGTTATGTTCGGCCGCCTCAAGATCCTGCCATGTACGCTTATGCAGCATATCCTGGATACGGGAATTATCAACAACCAGCGCCACAGCAGCCCCCTCAACAGGTTAAGGCACTCTAGGATTCCACACTGGATATGGAATTTTACATTGCTTACTCTTGCACAGATAAAAGTGACAGTTTTCTGTTTTTTTTTTCCTTCCGCTTTTGCAGTAAGAACAAGTGTTGGTCAAGTGCCCTATCACAACATATGATGAAATAGTTTTGGCAACTTTGGTGTAATTGGCATGA]
[+] EMBL AK063783 [TGGATGAACAGACACGTGCAATGACTGAAATGAATGGACAATATTGTTCTAGCAGGCCTATGCGTATTGGACCAGCATCCAACAAGAAAAATATAGGTGGCCAACAACAACCAAGTGCTACATACCAGAATACACAAGGAACAGATTCTGATAGCGATCCAAACAATACTACTGTATTTGTTGGTGGTCTTGATCCAAGTGTGACTGATGAGGTTCTGAAACAAGCTTTCAGTCCATATGGAGAACTTGTCTACGTCAAAATACCTGTAGGAAAGCGTTGTGGATTTGTTCAATATTCCAATAGGGCTTCAGCTGAGGAGGCCATAAGGATGCTAAATGGAAGCCAATTAGGAGGTCAGAGCATAAGGCTTTCATGGGGTCGTAGCCCTGGAAACAAGCAGCCTCAGCAAGACCAGAACCAATGGAATGCTGGCTATTATGGATATCCCCCCCAAGGATATGATCCATATGGTTATGTTCGGCCGCCTCAAGATCCTGCCATGTACGCTTATGCAGCATATCCTGGATACGGGAATTATCAACAACCAGCGCCACAGCAGCCCCCTCAACAGGTTAAGGCACTCTAGGATTCCACACTGGATATGGAATTTTACATTGCTTACTCTTGCACAGATAAAAGTGACAGTTTTCTGTTTTTTTTTTCCTTCCGCTTTTGCAGTAAGAACAAGTGTTGGTCAAGTGCCCTATCACAACATATGATGAAATAGTTTTGGCAACTTTGGTGTAATTGGCATGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13845#0 GGCTGGGACAACCTTAGGGGCATCTCTCCACGATTTTATCTCATCCGTTTGGCCCTGCTG 60
consensus_13845#2 ------------------------------------------------------------
consensus_13845#1 ------------------------------------------------------------
consensus_13845#0 CTGCTGTGCTGCCCCTTCTCTAGGGTTTTGACTCCTAAACCGCCGCCCCCGTCCTCCCGC 120
consensus_13845#2 ------------------------------------------------------------
consensus_13845#1 ------------------------------------------------------------
consensus_13845#0 GCCGCCATGATGCAGCCGCCGCCGCCGCCGCAGTGGGCAATGGGGCCGCCGCCTCCTCCG 180
consensus_13845#2 ------------------------------------------------------------
consensus_13845#1 ------------------------------------------------------------
consensus_13845#0 CAGTACTTCCAGGCTGGCCCTCCGCCGCCGCCGCCACAGTACTTCCAGGGGGCGCATCCA 240
consensus_13845#2 ------------------------------------------------------------
consensus_13845#1 ------------------------------------------------------------
consensus_13845#0 CCCGCTGCCATGTGGGGCCAGCCCCCGCCGCCGCAGGCTGCCCCTCCGCCGGCGCCGGCT 300
consensus_13845#2 ------------------------------------------------------------
consensus_13845#1 ------------------------------------------------------------
consensus_13845#0 GGTGGCGCAGCAGGGGACGAGGTGAGGACCCTGTGGATCGGCGACCTCCAGTTCTGGATG 360
consensus_13845#2 ------------------------------------------------------------
consensus_13845#1 ------------------------------------------------------------
consensus_13845#0 GAAGAGAACTACCTGTACAACTGCTTCTCCCAGGCCGGCGAGCTTATCTCAGCAAAGATA 420
consensus_13845#2 ------------------------------------------------------------
consensus_13845#1 ------------------------------------------------------------
consensus_13845#0 ATTCGGAACAAGCAAACTGGGCAACCTGAGGGTTATGGTTTCATTGAATTTGGCAGCCAT 480
consensus_13845#2 ------------------------------------------------------------
consensus_13845#1 ------------------------------------------------------------
consensus_13845#0 GCTATAGCCGAACAAGTTCTGCAAGGCTATAATGGTCAAATGATGCCTAATGGTAATCAG 540
consensus_13845#2 ------------------------------------------------------------
consensus_13845#1 ---------------------------------------------------GCCCCCGTC 9
consensus_13845#0 GTTTTCAAATTAAATTGGGCGACAAGTGGTGCTGGCGAGAAGCGTGGAGATGATGGCTCA 600
consensus_13845#2 ------------------------------------------------------------
consensus_13845#1 CTCCCGCGCCGCCATGATGCAGCCGCCGCCGCCGCCGCAGTGGGCAATGGGGCCGCCGCC 69
consensus_13845#0 GATTATACTATATTTGTTGGGGATCTCGCCTCGGATGTTACAGATTTAATTCTTCAAGAT 660
consensus_13845#2 ------------------------------------------------------------
consensus_13845#1 TCCTCCGCAGTACTTCCAGGCTGGCCCTCCGCCGCCGCCGCCACAGTACTTCCAGGGGGC 129
consensus_13845#0 ACATTCAAGGCCCATTACCAATCAGTTAAGGGTGCAAAAGTTGTCTTTGACAGAAGTACT 720
consensus_13845#2 ------------------------------------------------------------
consensus_13845#1 GCATCCACCCGCTGCCATGTGGGGCCAGCCCCCGCCGCCGCAGGCTGCCCCTCCGCCGGC 189
consensus_13845#0 GGTCGTTCAAAAGGCTATGGATTTGTTAAGTTTGGAGATTTGGATGAACAGACACGTGCA 780
consensus_13845#2 ----------------------------------------TGGATGAACAGACACGTGCA 20
consensus_13845#1 GCCGGCTGGTGGCGCAGCAGGGGACGAGGTGAGGACCCTGTGGATCGGCGACCTCCAGTT 249
***** * * * *
consensus_13845#0 ATGACTGAAATGAA------TGGACAATATTGTTCTAGCAGGCCTATGCG--TATTGGAC 832
consensus_13845#2 ATGACTGAAATGAA------TGGACAATATTGTTCTAGCAGGCCTATGCG--TATTGGAC 72
consensus_13845#1 CTGGATGGAAGAGAACTACCTGTACAAC-TGCTTCTCCCAGGCCGGCGAGCTTATCTCAG 308
** ** ** * ** **** * **** ****** * * *** *
consensus_13845#0 CAGCATCCAACAAGAAAAATATAGGTGGCCAAC--AACAACCAAGTGCT------ACATA 884
consensus_13845#2 CAGCATCCAACAAGAAAAATATAGGTGGCCAAC--AACAACCAAGTGCT------ACATA 124
consensus_13845#1 CAAAGATAATTCGGAACAAGCAAACTGGGCAACCTGAGGGTTATGGTTTCATTGAATTTG 368
** * *** ** * *** **** * * * * * *
consensus_13845#0 CCAGA-ATACACAAG--GAACAGATTCTG-ATAGCGAT-----CCAAACAATACTACTGT 935
consensus_13845#2 CCAGA-ATACACAAG--GAACAGATTCTG-ATAGCGAT-----CCAAACAATACTACTGT 175
consensus_13845#1 GCAGCCATGCTATAGCCGAACAAGTTCTGCAAGGCTATAATGGTCAAATGATGCC-TAAT 427
*** ** * ** ***** ***** * ** ** **** ** * *
consensus_13845#0 ATTTGTTGGTGGTCTTGATCCAAGTGTGACTGATGAGGTTCTGA-AACAAGCCTTCAGTC 994
consensus_13845#2 ATTTGTTGGTGGTCTTGATCCAAGTGTGACTGATGAGGTTCTGA-AACAAGCTTTCAGTC 234
consensus_13845#1 GGTAATCAGGTTTTCAAATTAAATTGGGCGACAAGTGGTGCTGGCGAGAAGCGTGGAGAT 487
* * * * ** ** ** * * * *** *** * **** * **
consensus_13845#0 CATATGGAGAACTTGTCTACGTCAA---AATACCTGTAGGAAAGCGTTGTGGATTTG--- 1048
consensus_13845#2 CATATGGAGAACTTGTCTACGTCAA---AATACCTGTAGGAAAGCGTTGTGGATTTG--- 288
consensus_13845#1 GATGGCTCAGATTATACTATATTTGTTGGGGATCTCGCCTCGGATGTTACAGATTTGATT 547
** * * *** * * ** *** ******
consensus_13845#0 -TTCAATATTCCAATAGGGCT---------TCAGCTGAGGAGGCCATAAGGATGCTAAAT 1098
consensus_13845#2 -TTCAATATTCCAATAGGGCT---------TCAGCTGAGGAGGCCATAAGGATGCTAAAT 338
consensus_13845#1 CTTCAAGATACATTCAAGGCCCATTACCAATCAGTTAAGGGTGCAAAAGTTGTCTTTGAC 607
***** ** * * *** **** * *** ** * * * * *
consensus_13845#0 GGAAGCCAATTAGGAGGTCAGAGCA-TAAGGCTTTCATGGGGTCGTAGCCCTGGAAACAA 1157
consensus_13845#2 GGAAGCCAATTAGGAGGTCAGAGCA-TAAGGCTTTCATGGGGTCGTAGCCCTGGAAACAA 397
consensus_13845#1 AGAAGT--ACTGGTCGTTCAAAAGGCTATGGATTTGTTAAGTTTGGAGATTTGGATGAAC 665
**** * * * * *** * ** ** *** * * * * ** **** *
consensus_13845#0 GCAGCCTCAGCAAGACCAGAACCAATGGA--ATGCTGG-CTATTATGGATATCCCCCCCA 1214
consensus_13845#2 GCAGCCTCAGCAAGACCAGAACCAATGGA--ATGCTGG-CTATTATGGATATCCCCCCCA 454
consensus_13845#1 AGACACGTGCAATGACTGAAATGAATGGACAATATTGTTCTAGCAGGCCTATGCGTATTG 725
* * * *** ** ****** ** ** *** * * *** *
consensus_13845#0 AGGATATGATCCATATGGTTATGTTCGGCCGCCT-CAAGATCCT----GCCATGTACGCT 1269
consensus_13845#2 AGGATATGATCCATATGGTTATGTTCGGCCGCCT-CAAGATCCT----GCCATGTACGCT 509
consensus_13845#1 GACCAGCATCCAACAAGGAAAATATAGGTGGCCAACAACAACCAAGTGGTAAAGCTTTCT 785
* * * ** * * ** *** *** * ** * * * **
consensus_13845#0 TATGCAGC-ATATCCTGGATACGGGAATT--ATCAACAACC--AGCGCCACAGCAGCCCC 1324
consensus_13845#2 TATGCAGC-ATATCCTGGATACGGGAATT--ATCAACAACC--AGCGCCACAGCAGCCCC 564
consensus_13845#1 TTCACAGCTAGTTCCTACTTTTGAATATTTCATTAGAAATGTAAACATTTTATTCAGTGA 845
* **** * **** * * *** ** * ** * * *
consensus_13845#0 CTCAACAGTAAGAACAAGTGTTGGTCAAGTGCCCTATCACAACATATGATGAAATAGTTT 1384
consensus_13845#2 CTCAACAGGTTAA------GGCACTCTAGGATTCCA-CACTGGATATGG-AATTTTACAT 616
consensus_13845#1 GATGATATGATAATTCGCAATAGATCAAGCATTTTTGTGCTACTTGCTG---TTTATCAT 902
* * * ** ** * * * *
consensus_13845#0 TGGCAACTTTGGTGTAATTGGCA-TGAAAATTTTTTGAACTGTTGCTTGTGCTATC---- 1439
consensus_13845#2 TGCTTACTCTTGCACAGATAAAAGTGACAGTTTTCTGTTTTTTTTTTCCTTCCGCT---- 672
consensus_13845#1 AACAT-TGTTTGCTTGGAAAGAAGGGACCGTGTTCCTTGTTTCGATGGTTATGGTCGAAG 961
* * * ** * ** * *
consensus_13845#0 TTTGTTG-A--ACGTCGTGTGCACGCCCAGCCTATGTTGTAACATGACATTT-TACTGAG 1495
consensus_13845#2 TTTGCAGTA--AGAACAAGTGTTGGTCAAG--TGCCCTATCACAACATATGA-TGAAATA 727
consensus_13845#1 TCTAGAGTGTCACTTCGATAGTTAGGTAGTTTAGTTGATATGCAATGTTTTAGTGTGGCT 1021
* * * * * * * ** * *
consensus_13845#0 GCCTAGGTGACACTAGAAT-----GACAGCTTTTAGGGAGGGAGTATTGGAGTGAACATT 1550
consensus_13845#2 GTTTTGGCAACTTTGGTGT-----AATTGGCATGA------------------------- 757
consensus_13845#1 GTACTAAAAACTGCAACATCTGCAATTTGGAATGTTTGGTCAAC---------------- 1065
* ** * * *
consensus_13845#0 TTTCGCTTGCTCAAAAAGTTTTGTCGCCATGGGTACCATTAGAAGAGGAGTTGAGCAAGA 1610
consensus_13845#2 ------------------------------------------------------------
consensus_13845#1 ------------------------------------------------------------
consensus_13845#0 AATAATAAGTTTGTAACATTAGACATCGGCGTACATTTTAATCGGGCACTTTGGTATTAT 1670
consensus_13845#2 ------------------------------------------------------------
consensus_13845#1 ------------------------------------------------------------
consensus_13845#0 TGCACTGGAGCCGTTTTCTGTTTGCGTCCCTAAATAATCCTGCTTTGAGCCGGTGACTGG 1730
consensus_13845#2 ------------------------------------------------------------
consensus_13845#1 ------------------------------------------------------------
consensus_13845#0 ATGATGTTGGCAGCATTCCATTGAACTGAAGTGTTGATTTGATTTTTATCAAAAAAAAAA 1790
consensus_13845#2 ------------------------------------------------------------
consensus_13845#1 ------------------------------------------------------------
consensus_13845#0 ACAAAAAAAA 1800
consensus_13845#2 ----------
consensus_13845#1 ----------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||