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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13862#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2074 fasta sequence
[GCTTGACAAAGCAAAGAACTTCGTTGAGGAAAACAACATCAACCATGAGGCTATTGTTTGGAAGACGCTACTGTCAGCTTGTCGACTTCACCAGCACAACGAATATGCAAAATTGGCTTCTGAAAAATTGGTTCAACTGGAGCAATGCGATGCTGGATCATATGTTATGCTGTCAAACATATATGCAACCAACAACAAATGGCACGACACTTTTGAGCTTAGAGTTTCAATGCAGGAAAGGAAGGTCAGGAAGCAGCCTGGTCGATCTTGGATCCACCTGAAGAATACTGTGCATACATTTGTTGCAGGGGATGCGTCACACCCACAATCAGCTGAAATTTATGCTTACTTGGAGAAGCTGGTGGAGAGACTGAAGGAGATTGGGTACACAAGTAGAACTGATCTTGTTGTTCATGATGTAGAGGATGAACAAAGGGAAACAGCTCTTAAGTTCCACAGTGAGAAGCTGGCCATTGCATTTGGGATCATCAGCACTCCAAGTGGGACTCCACTTAGGATCTTCAAGAATCTGCGTGTTTGTGAGGATTGCCATGAAGCGATCAAGTACATAAGTCTGGCCACAGGTAGGGAAATAGTTGTTCGTGACTTGTATCGGTTTCATCATTTCAAGGATGCTAGTTGTTCTTGTGAGGATTTCTGGTGAAATTTTGTTGACCATTCATGATGACTAACTGAGTAACTGAAGATTGTTATGTACTGCGTCGTGCACGTGCATGGCTGTACTAGAGATTGTGGCTCAAATGTATATTGATTTAAGGAGAATTCCTTATTAGCCATCTGATGCCAAGTATATTCCTCATCTGCGGAGAAGCGCATTAACAGGCTACCTCACCTTGATGAGCCAGACATCCTCACCTCCACCTACGAACCATTATCATCGGCAGTCGGCATGGACTACTCGCCATTTAGCAAGGCTGTGGTGAGGCAGGCGGTGGATAACCTGGTGAAGGCCAGCAACTGGATCATCCTGATCCATGTCCTTCCCAGAGGAGCAGATGCCAGCCACAAGGAGCTCTGGAAGAGCACCGGCTCACACATGCAGAGGCATTGCAATTTTTCTGCTGCTTCTCTTGTTCAGCAAATTCTGACTGCTGCTTCTCTTGTTCAACAAATTCTGACGCAGAAAGCTTAACAGGGAGGTGTTGGGTCAACCCTGATAAGGAGGTACTAGCGATCCTGCAAGCTGAATCGAAGTCCAAGCAGGTAATGACTCAGCTTTGCCAGAAGATCACCCACCTTTGTATTTGGGTGGTTTGTGAGGAATTCTGCATAGGGGACAGGCGAATTATGCTTGATGGTTCTATAGTTGTAACAATCTGCAACTGCCTGGGCGTCTGTACAGACTATGCTTGAGGTTCACCATTCCATTTCCCATGCTGGCATTCTCATTTTTCTTGGTTAGGACAAGAGCTTCTTGACATTCATTGACAAGTGTATTGAAGGTTCTTATTTTGTAATGTCATAGTAAATTCCTTGTTTGGGGTCATGTCTGCAGTTTGCAAGGAGTCCAGGGAAGGTTCACACTTGAACCCAAGCAGTGGGCTGTTCCAACCAAATGAGAAGAAGGATGTGGTAACATCAACTGGCTAGCAATGGTTGGGATTCTCGCTGGTTACCTTTGTGATGGGGCCTCTTAAGATGTTAAAGCTCTATGCTGTTCCTTACATGATATTGTCATGTGGTTGGATTTTGTCACATACTTGCACCATCATGGCCATGAAGAAGCTTCCCTGGCACCATGGAAGAGTAAATAACATTATTAATGTTGTGGGATTGCTATTTGTCAATGATGCAAGGATGGCCACTAGGGTATAGTCCATTTTTGTTCAACATAGGGCATAGTCTAGTTTTGTTCAACATAGGGCATAGTCCATTTTTGTTTGCTAAATGGCAGAAGGTTTATTTGTTCAAACATAGGTTCTGCGTGTAAAAATTATTGAGTAGAGATTTATGCCTTTAAAGATAATTAGCTGAATTTCCCGTGCAACTAAACTAAATGATTATGTGAAAGTAGAATTGTATTTGACATACAACTCTTGCATCTATATATGTA]
[+] EMBL AK103504 [GCTTGACAAAGCAAAGAACTTCGTTGAGGAAAACAACATCAACCATGAGGCTATTGTTTGGAAGACGCTACTGTCAGCTTGTCGACTTCACCAGCACAACGAATATGCAAAATTGGCTTCTGAAAAATTGGTTCAACTGGAGCAATGCGATGCTGGATCATATGTTATGCTGTCAAACATATATGCAACCAACAACAAATGGCACGACACTTTTGAGCTTAGAGTTTCAATGCAGGAAAGGAAGGTCAGGAAGCAGCCTGGTCGATCTTGGATCCACCTGAAGAATACTGTGCATACATTTGTTGCAGGGGATGCGTCACACCCACAATCAGCTGAAATTTATGCTTACTTGGAGAAGCTGGTGGAGAGACTGAAGGAGATTGGGTACACAAGTAGAACTGATCTTGTTGTTCATGATGTAGAGGATGAACAAAGGGAAACAGCTCTTAAGTTCCACAGTGAGAAGCTGGCCATTGCATTTGGGATCATCAGCACTCCAAGTGGGACTCCACTTAGGATCTTCAAGAATCTGCGTGTTTGTGAGGATTGCCATGAAGCGATCAAGTACATAAGTCTGGCCACAGGTAGGGAAATAGTTGTTCGTGACTTGTATCGGTTTCATCATTTCAAGGATGCTAGTTGTTCTTGTGAGGATTTCTGGTGAAATTTTGTTGACCATTCATGATGACTAACTGAGTAACTGAAGATTGTTATGTACTGCGTCGTGCACGTGCATGGCTGTACTAGAGATTGTGGCTCAAATGTATATTGATTTAAGGAGAATTCCTTATTAGCCATCTGATGCCAAGTATATTCCTCATCTGCGGAGAAGCGCATTAACAGGCTACCTCACCTTGATGAGCCAGACATCCTCACCTCCACCTACGAACCATTATCATCGGCAGTCGGCATGGACTACTCGCCATTTAGCAAGGCTGTGGTGAGGCAGGCGGTGGATAACCTGGTGAAGGCCAGCAACTGGATCATCCTGATCCATGTCCTTCCCAGAGGAGCAGATGCCAGCCACAAGGAGCTCTGGAAGAGCACCGGCTCACACATGCAGAGGCATTGCAATTTTTCTGCTGCTTCTCTTGTTCAGCAAATTCTGACTGCTGCTTCTCTTGTTCAACAAATTCTGACGCAGAAAGCTTAACAGGGAGGTGTTGGGTCAACCCTGATAAGGAGGTACTAGCGATCCTGCAAGCTGAATCGAAGTCCAAGCAGGTAATGACTCAGCTTTGCCAGAAGATCACCCACCTTTGTATTTGGGTGGTTTGTGAGGAATTCTGCATAGGGGACAGGCGAATTATGCTTGATGGTTCTATAGTTGTAACAATCTGCAACTGCCTGGGCGTCTGTACAGACTATGCTTGAGGTTCACCATTCCATTTCCCATGCTGGCATTCTCATTTTTCTTGGTTAGGACAAGAGCTTCTTGACATTCATTGACAAGTGTATTGAAGGTTCTTATTTTGTAATGTCATAGTAAATTCCTTGTTTGGGGTCATGTCTGCAGTTTGCAAGGAGTCCAGGGAAGGTTCACACTTGAACCCAAGCAGTGGGCTGTTCCAACCAAATGAGAAGAAGGATGTGGTAACATCAACTGGCTAGCAATGGTTGGGATTCTCGCTGGTTACCTTTGTGATGGGGCCTCTTAAGATGTTAAAGCTCTATGCTGTTCCTTACATGATATTGTCATGTGGTTGGATTTTGTCACATACTTGCACCATCATGGCCATGAAGAAGCTTCCCTGGCACCATGGAAGAGTAAATAACATTATTAATGTTGTGGGATTGCTATTTGTCAATGATGCAAGGATGGCCACTAGGGTATAGTCCATTTTTGTTCAACATAGGGCATAGTCTAGTTTTGTTCAACATAGGGCATAGTCCATTTTTGTTTGCTAAATGGCAGAAGGTTTATTTGTTCAAACATAGGTTCTGCGTGTAAAAATTATTGAGTAGAGATTTATGCCTTTAAAGATAATTAGCTGAATTTCCCGTGCAACTAAACTAAATGATTATGTGAAAGTAGAATTGTATTTGACATACAACTCTTGCATCTATATATGTA]
consensusID : consensus_13862#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 934 fasta sequence
[ACAAGTTCGCTATCAACAGGCGATATGTCACCCTATTTCTGTTGCTGTTCAACGACGTCCTTAAATAGGAGTACTTGTGCTACAAGCCTAACCCAGAGATAGCACCACAAATACCTCTCTTTTCTTTAGGTGTTTACTTCGACAGCTTCACCACCTTCGTTTACCCATTGCCATGGCGGCTGAGAAGCGAACCATTGGGCTCGGCATGGACTACTCGCCGTCGAGCAAGGCCGCGGCGAAGTGGGCGGTGGATAACCTGGTGAAGGCCGGCGACCGGATCATCCT-CGTCCATGTCCTT-CCCAAAGGAGCAGATGCCAGCCACAAGGAGCTC-TGGAAGAGCACCGGCTCACCTTTGATT-CCTCTGCTGGAGTTTA-TGGAGATGAACGTGCAGGCGAGGTA-TGGGATC-AACCCCGA-T-AAGGAGGTAC-TGGA-GATCCTGCAAGC-TGAATCCAAGT-CCAAGCAGG-TTGAAGTAC-TGGCAA-AAGTTTAC-TGGGGTGATGCAA-GGGAGAAACTC-TGTGAGGC-AG-TAGACGATC-TCAAGGTGAATACCTTTGTTCTTGGTTGCAGGGGACTAGGACCCTTGAAAAGGGCCCTACTTGGAAGTGTTAGCAACTATGTTGTCAACAATGCAACCTGCCCGGTTACTGTGGTGCGTGCACCAACCGTGTCAAATGCCTGATTCTATGCTACATGGGACTGCTGGAAATTGGAATGCTGGGCTTGTTTTGCTGTTCATCCATCTTTTAGCAGAGAACCTTCATCTGAGTTGGTGCCATTGCAAGGATTGGTCTCTGGCTCCTGCACTTAGCTTTTCCATGCTATTGGAATGTTATTAAGTTGAATCTTCGGTGTATTTCCTTCTGTTACTTCCTATGTATAGTTCATTACTACTGTTTAATGGTGAATGTTAAAGATTGCCAATGGTGTGCTTGCTTTAAAAAAA]
[+] EMBL C97488 [ACAAGTTCGCTATCAACAGGCGATATGTCACCCTATTTCTGTTGCTGTTCAACGACGTCCTTAAATAGGAGTACTTGTGCTACAAGCCTAACCCAGAGATAGCACCACAAATACCTCTCTTTTCTTTAGGTGTTTACTTCGACAGCTTCACCACCTTCGTTTACCCATTGCCATGGCGGCTGAGAAGCGAACCATTGGGCTCGGCATGGACTACTCGCCGTCGAGCAAGGCCGCGGCGAAGTGGGCGGTGGATAACCTGGTGAAGGCCGGCGACCGGATCATCCT CGTCCATGTCCTT CCCAAAGGAGCAGATGCCAGCCACAAGGAGCTCTTGGAAGAGCACCGGCTCANCTTTGATT CCTCTGCTGGAGTTTATTGGNGATGAACGTNCAGGCGAGGTA TTGGGTCNAACCCCGATT AAGG ]
[+] EMBL AK108499 [ GTCACCCTATTTCTGTTGCTGTTCAACGACGTCCTTAAATAGGAGTACTTGTGCTACAAGCCTAACCCAGAGATAGCACCACAAATACCTCTCTTTTCTTTAGGTGTTTACTTCGACAGCTTCACCACCTTCGTTTACCCATTGCCATGGCGGCTGAGAAGCGAACCATTGGGCTCGGCATGGACTACTCGCCGTCGAGCAAGGCCGCGGCGAAGTGGGCGGTGGATAACCTGGTGAAGGCCGGCGACCGGATCATCCT CGTCCATGTCCTT CCCAAAGGAGCAGATGCCAGCCACAAGGAGCTC TGGAAGAGCACCGGCTCACCTTTGATT CCTCTGCTGGAGTTTA TGGAGATGAACGTGCAGGCGAGGTA TGGGATC AACCCCGA T AAGGAGGTAC TGGA GATCCTGCAAGC TGAATCCAAGT CCAAGCAGG TTGAAGTAC TGGCAA AAGTTTAC TGGGGTGATGCAA GGGAGAAACTC TGTGAGGC AG TAGACGATC TCAAGGTGAATACCTTTGTTCTTGGTTGCAGGGGACTAGGACCCTTGAAAAGGGCCCTACTTGGAAGTGTTAGCAACTATGTTGTCAACAATGCAACCTGCCCGGTTACTGTGGTGCGTGCACCAACCGTGTCAAATGCCTGATTCTATGCTACATGGGACTGCTGGAAATTGGAATGCTGGGCTTGTTTTGCTGTTCATCCATCTTTTAGCAGAGAACCTTCATCTGAGTTGGTGCCATTGCAAGGATTGGTCTCTGGCTCCTGCACTTAGCTTTTCCATGCTATTGGAATGTTATTAAGTTGAATCTTCGGTGTATTTCCTTCTGTTACTTCCTATGTATAGTTCATTACTACTGTTTAATGGTGAATGTTAAAGATTGCCAATGGTG ]
[+] EMBL AU063552 [ ACCTCTCTTTTCTTTAGGTGTTTACTTCGACAGCTTCACCACCTTCGTTTACCCATTGCCATGGCGGCTGAGAAGCGAACCATTGGGCTCGGCATGGACTACTCGCCGTCGAGCAAGGCCGCNG GAAGTGGGCGGTGGATAACCTGGTGAAGGCCGGCGACCGGATCATCCT CGTCCATGTCCTT CCCAAAGGAGCAGATGCCAGCCACAAGGAGCTC TGGAAGAGAACCGGCTCACCTTTGATT CCTCTGCTGGAGTTTA TGGAGATGAACGTGCAGGCGAGGTATTGGGATC AACNCCGA T AAGGAGGTACTTNGAGGATCCTNCAAGCTTGAATCCAAGN CCAAGCA ]
[+] EMBL AU063323 [ ACCTCTCTTTTCTTTAGGTGTTTACTTCGACAGCTTCACCACCTTCGTTTACCCATTGCCATGGCGGCTGAGAAGCGAACCATTGGGCTCGGCATGGACTACTCGCCGTCGAGCAAGGCCGCGGCGAAGTGGGCGGTGGATAACCTGGTGAAGGCCGGCGACCGGATCATCCT CGTCCATGTCCTT CCCAAAGGAGCAGATGCCAGCCACAAGGAGCTC TGGAAGAGCACCGGCTCACCTTTGATT CCTCTGCTGGAGTTTA TGGAGATGAACGTGCAGGCGAGGTA TGGGATC AACCCCGA T AAGGAGGTAC TTGA GATCCTGCAAGCTTGAATCCAAGT CCAAGCAGG TTNAAGTAC TTGCAA AAGTTTACTTGGGGTGATGCAA GGGNGAAACTC TTTTAGGC AG TAGACGGTT TCAAGGTGNATACCTTTGTTCTTGGT ]
[+] EMBL AU063602 [ TCTNTNTTCTTTAGGTGTTTACTTNGACAGCTTCACCACCTTCGTTTACCCATTGCCATGGCGGCTGAGAAGCGAACCATTGGGCTCGGCATGGACTACTCGCCGTCGAGCAAGGCCGCNG GAAGTGGGCGGTNGATAACCTGGTGAAGGCCGGCGACCGGATCATCCT CGTCCATGTCCTT CCCAAAGGAGCAGATGCCAGCCACAAGGAGCTC TGGAAGA NACCGGCTNACCTTTGATT CCTCTGCTGGAGTTTA TGGAGATGAACGTGCAGGCGAGGTA TGGGATC ANCCCCGA T AAGGAGGTAC TNGA GATCCTGCAAGC TGAATNCAAGT CCAAGCAGG TTGAAGTAC TTGCAA AAGTTTAC TNGGGTTATCCAN GGAAG AACTC TTTTAGGCAAG TAAACGATC TCAAGGTGAATACNTTT ]
[+] EMBL AU063603 [ TCTCTTTTCTTTAGGTGTTTACTTCGACAGCTTCACCACCTTCGTTTACCCATTGCCATGGCGGCTGAGAAGCGAACCATTGGGCTCGGCATGGACTACTCGCCGTCGAGCAAGGCCGCGGCGAAGTGGGCGGTGGATAACCTGGTGAAGGCCGGCGACCGGATCATCCT CGTCCATGTCCTT CCCAAAGGAGCAGATGNCAGCCACAAGGAGCTC TGGAAGAGCACCGGCTCACCTTTGATT CCTCTGCTGGAGTTTA TGGAGATGAACGTGCAGNCGAGGTA TGGGATC AACCCCGA T AAGGAGGTAC TGGA GATCCTGCAAGT TGAATCCAAGT CCAAGCAGGTTTGAAGTACTTGGCAANAAGTTTACTTGNGGTGATGCAA GNGAGAAACTC TTTGAGGC AN TAGACGTTC TCAAGGTGAAT ]
[+] EMBL C29154 [ CTCTTTTCTTTAGGTGTTTACTTCGACAGCTTCACCACCTTCGTTTACCCATTGCCATGGCGGCTGAGAAGCGAACCATTGGGCTCGGCATGGACTACTCGCCGTCGAGCAAGGCCGCGGCGAAGTGGGCGGTGGATAACCTGGTGAAGGCCGGCGACCGGATCATCCT CGTCCATGTCCTT CCCAAAGGAGCAGATGCCAGCCACAAGGAGCTC TGGAAGAGCACCGGCTCACCTTTGATT CCTCTGCTGGAGTTTA TGGAGATGAACGTGCAGGCGAGGTA TGGGATC AANCCCGA T AAGGAGGTAC TGGA GATCCTGCAANCTTGAATCCAAGTNCCAAGCAGG TTGAAGTAC TTGCAA AAGTTTACTTGGGGTTATGCAAGGGGNGAAACTCTTNTTAGGC AGTTAGACGATCTTCAAGGTGATTACC ]
[+] EMBL AU092886 [ ggcCGACCGGATCATCCTCCGTCCATGTCNTTCCCCAAAGGACCAGATGCCAGCCACAAGGAGCTC TGGAAGAGCACCGGCTCACCTTTGATT CCTCTGCTGGAGTTTA TGGAGATGAACGTGCAGGCGAGGTA TGGGATC AACCCCGA TAAAGGAGGTAC TGGA GATCCTGCAAGC TGAATCCAAGTCCCAAGCAGG TTGAAGTAC TGGCAA AAGTTTAC TGGGGTGATGCAA GGGAGAAACTC TGTGAGGC AG TAGACGATC TCAAGGTGAATACCTTTGTTCTTGGTTGCAGGGGACTAGGACCCTTGAAAAGGGCCCTACTTGGAAGTGTTAGCAACTATGTTGTCAACAATGCAACCTGCCCGGTTACTGTGGTGCGTGCACCAACCGTGTCAAATGCCTGATTCTATGCTACATGGGACTGCTGGAAATTGGAATGCTGGGCTTGTTTTGCTGTTCATCCATCTTTTAGCAGAGAACCTTCATCTGAGTTGGTGCCATTGCAAGGATTGGTCTCTGGCTCCTGCACTTAGCTTTTCCATGCTATTGGAATGTTATTAAGTTGAATCTTCGGTGTATTTCCTTCTGTTACTTCCTATGTATAGTTCATTACTACTGTTTAATGGTGAATGTTAAAGATTGCCAATGGTGTGCTTGCTTTAAAAAAA]
[+] EMBL AU165306 [ angctTC TGGAAGAGCACCGGCTCACCTTTGATTCCCTCTGCTGGAGTTTA TGGAGATGAACGTGCAGGCGAGGTA TGGGATC AACCCCGA T AAGGAGGTAC TGGA GATCCTGCAAGC TGAATCCAAGT CCAAGCAGG TTGAAGTAC TGGCAA AAGTTTAC TGGGGTGATGCAA GGGAGAAACTC TGTGAGGC AG TAGACGATC TCAAGGTGAATACCTTTGTTCTTGGTTGCAGGGGACTAGGACCCTTGAAAAGGGCCCTACTTGGAAGTGTTAGCAACTATGTTGTCAACAATGCAACCTGCCCGGTTACTGTGGTGCGTGCACCAACCGTGTCAAATGCCTGATTCTATGCTACATGGGACTGCTGGAAATTGGAATGCTGGGCTTGTTTTGCTGTTCATCCATCTTTTAGCAGAGAACCTTCATCTGAGTTGGTGCCATTGCAAGGATTGGTCTCTGGCTCCTGCACTTAGCTTTTCCATGCTATTGGAATGTTATTAAGTTGAATCTTCGGTGTATTTCCTTCTGTTACTTCCTATGTATAGTTCATTACTACTGTTTAATGGTGAATGTTAAAGATTGCCAAaaaaaa ]
consensusID : consensus_13862#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 709 fasta sequence
[CTGGATACCCCTTGGTNAAACCCCCGGNCAACCCGGAATCATCCCTCGNCCCATGTCCCTTCCCCAAAAGGACCAANATGCCCAGCCCACAAGGAGCTCTGGAAAGAGCACCGGCTNCACCTTTGATTCCCTCTGCCTGGAGTTTTATGGAGATGAACGTGCAGGCGAGGTATGGGATCAACCCCCGATAAAGGAGGTNCTGGAGATCCTGCAAGCTGAATCCAAGTCCAAGCAGGTTGAAGTACTGGCAAAAAGTTTACTGGGGTGATGCAAGGGAGAAACTCTGTGAGGCAGTAGACGATCTCAAGGTGAATNCCTTTGTTCTTGGTTGCAGGGGACTAGGACCCTTGAAAAGGGCCCTACTTGGAAGTGTTAGCAACTATGTTGTCAACAATGCAACCTGCCCGGTTACTGTGGTGCGTGCACCAACCGTGTCAAATGCCTGATTCTATGCTACATGGGACTGCTGGAAATTGGAATGCTGGGCTTGTTTTGCTGTTCATCCATCTTTTAGCAGAGAACCTTCATCTGAGTTGGTGCCATTGCAAGGATTGGTCTCTGGCTCCTGCACTTAGCTTTTCCATGCTATTGGAATGTTATTAAGTTGAATCTTCGGTGTATTTCCTTCTGTTACTTCCTATGTATAGTTCATTACTACTGTTTAATGGTGAATGTTAAAGATTGCCAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL C97487 [CTGGATACCCCTTGGTNAAACCCCCGGNCAACCCGGAATCATCCCTCGNCCCATGTCCCTTCCCCAAAAGGACCAANATGCCCAGCCCACAAGGAGCTCTGGAAAGAGCACCGGCTNCACCTTTGATTCCCTCTGCCTGGAGTTTTATGGAGATGAACGTGCAGGCGAGGTATGGGATCAACCCCCGATAAAGGAGGTNCTGGAGATCCTGCAAGCTGAATCCAAGTCCAAGCAGGTTGAAGTACTGGCAAAAAGTTTACTGGGGTGATGCAAGGGAGAAACTCTGTGAGGCAGTAGACGATCTCAAGGTGAATNCCTTTGTTCTTGGTTGCAGGGGACTAGGACCCTTGAAAAGGGCCCTACTTGGAAGTGTTAGCAACTATGTTGTCAACAATGCAACCTGCCCGGTTACTGTGGTGCGTGCACCAACCGTGTCAAATGCCTGATTCTATGCTACATGGGACTGCTGGAAATTGGAATGCTGGGCTTGTTTTGCTGTTCATCCATCTTTTAGCAGAGAACCTTCATCTGAGTTGGTGCCATTGCAAGGATTGGTCTCTGGCTCCTGCACTTAGCTTTTCCATGCTATTGGAATGTTATTAAGTTGAATCTTCGGTGTATTTCCTTCTGTTACTTCCTATGTATAGTTCATTACTACTGTTTAATGGTGAATGTTAAAGATTGCCAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU182054 [ TGGGGTGATGCAAGGGAGAAACTCTGTGAGGCAGTAGACGATCTCAAGGTGAATACCTTTGTTCTTGGTTGCAGGGGACTAGGACCCTTGAAAAGGGCCCTACTTGGAAGTGTTAGCAACTATGTTGTCAACAATGCAACCTGCCCGGTTACTGTGGTGCGTGCACCAACCGTGTCAAATGCCTGATTCTATGCTACATGGGACTGCTGGAAATTGGAATGCTGGGCTTGTTTTGCTGTTCATCCATCTTTTAGCAGAGAACCTTCATCTGAGTTGGTGCCATTGCAAGGATTGGTCTCTGGCTCCTGCACTTAGCTTTTCCATGCTATTGGAATGTTATTAAGTTGAATCTTCGGTGTATTTCCTTCTGTTACTTCCTATGTATAGTTCATTACTACTGTTTAATGGTGAATGTTAAAGATTGCCAAAAA ]
consensusID : consensus_13862#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence
[AGATCAAAAGCCATACTTGTNCTGAGCTTGGACGAANAATATTCTTCGTCTTTCCAGATGANTAGAGAGCCTTCTGGAGAGAGAAGCACCATCATGNCTGCCTATCTGGCGAACGNCCGATCGGCCATGTAAAGGAGAAAAGGCAGTTTGCACAAGGAATAAAGGCAACCTAGTCTACAGGTTCGCTATCAACAGGCGATATGTCACCCTATTTCTGTTGCTGTTCAACGACGTCCTTAAATAGGAGTACTTGTGCTNCAAGCCTAACCCAGAGATAGCACCNCAAATACCTCTCTTTTCTTTAGGTGTTTACTTCGACAGCTTCACCACCTTCGTTTACCCATTGCCATGGCGGCTGAGAAGCGAACCATTGGGCTCGGCATGGACTACTCGCCATCGAGCAAGGCCGCGGCGAAGTGGGCGGTGGATAACCTGGTGAAGGCCGGCGACCGGATCATCCTCGTCCATGTCCTTCCCAAAGGAGCAGATGCCAGCCACAAGGAGCTCTGGAAGAGCACCGGCTCACGTATGTAGGGGCATTGCATTTTTTTTTCTTTTGCCTTTTCAGTTTCTTCTCTGTTCCCCCTGTCNNGTCCTCNNACAAGCNTNGCGANTCC]
[-] EMBL CA764828 [AGATCAAAAGCCATACTTGTNCTGAGCTTGGACGAANAATATTCTTCGTCTTTCCAGATGANTAGAGAGCCTTCTGGAGAGAGAAGCACCATCATGNCTGCCTATCTGGCGAACGNCCGATCGGCCATGTAAAGGAGAAAAGGCAGTTTGCACAAGGAATAAAGGCAACCTAGTCTACAGGTTCGCTATCAACAGGCGATATGTCACCCTATTTCTGTTGCTGTTCAACGACGTCCTTAAATAGGAGTACTTGTGCTNCAAGCCTAACCCAGAGATAGCACCNCAAATACCTCTCTTTTCTTTAGGTGTTTACTTCGACAGCTTCACCACCTTCGTTTACCCATTGCCATGGCGGCTGAGAAGCGAACCATTGGGCTCGGCATGGACTACTCGCCATCGAGCAAGGCCGCGGCGAAGTGGGCGGTGGATAACCTGGTGAAGGCCGGCGACCGGATCATCCTCGTCCATGTCCTTCCCAAAGGAGCAGATGCCAGCCACAAGGAGCTCTGGAAGAGCACCGGCTCACGTATGTAGGGGCATTGCATTTTTTTTTCTTTTGCCTTTTCAGTTTCTTCTCTGTTCCCCCTGTCNNGTCCTCNNACAAGCNTNGCGANTCC]
consensusID : consensus_13862#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 342 fasta sequence
[ATGTGCTGATGGGCTTGACATAGGGATCTGGGCTGGAAATTGGGATATGGGCTGGGGCTGTTGTGTGTGTGGGCTGGGTGTGCAATGCCCATGCTGTTGTAGCAAGAGGAACACTTGCATGCTGGAGTTGGGTGCACAATTGGCAAAGGATTGGTGCTGCTGGCTGCCTGGCAACTTGAGCTGTGTGTGCCATGGCTGATGTGGGAATGGTTGATTGAAAGTTGGAATGCTTGCGGTGGTGATGTTGCCTGTGCTGGTTACTTCCTATGTATAGTTCATTACTACTGTTTAATGGTGAATGTTAAAGATTGCCAATGGTGTGCTTGCTTTATGTAAAAAAAA]
[+] EMBL BI805287 [ATGTGCTGATGGGCTTGACATAGGGATCTGGGCTGGAAATTGGGATATGGGCTGGGGCTGTTGTGTGTGTGGGCTGGGTGTGCAATGCCCATGCTGTTGTAGCAAGAGGAACACTTGCATGCTGGAGTTGGGTGCACAATTGGCAAAGGATTGGTGCTGCTGGCTGCCTGGCAACTTGAGCTGTGTGTGCCATGGCTGATGTGGGAATGGTTGATTGAAAGTTGGAATGCTTGCGGTGGTGATGTTGCCTGTGCTGGTTACTTCCTATGTATAGTTCATTACTACTGTTTAATGGTGAATGTTAAAGATTGCCAATGGTGTGCTTGCTTTATGTAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13862#1 ------------------------------------------------------------
consensus_13862#2 ------------------------------------------------------------
consensus_13862#4 ------------------------------------------------------------
consensus_13862#0 GCTTGACAAAGCAAAGAACTTCGTTGAGGAAAACAACATCAACCATGAGGCTATTGTTTG 60
consensus_13862#3 ------------------------------------------------------------
consensus_13862#1 ------------------------------------------------------------
consensus_13862#2 ------------------------------------------------------------
consensus_13862#4 ------------------------------------------------------------
consensus_13862#0 GAAGACGCTACTGTCAGCTTGTCGACTTCACCAGCACAACGAATATGCAAAATTGGCTTC 120
consensus_13862#3 ------------------------------------------------------------
consensus_13862#1 ------------------------------------------------------------
consensus_13862#2 ------------------------------------------------------------
consensus_13862#4 ------------------------------------------------------------
consensus_13862#0 TGAAAAATTGGTTCAACTGGAGCAATGCGATGCTGGATCATATGTTATGCTGTCAAACAT 180
consensus_13862#3 ------------------------------------------------------------
consensus_13862#1 --------------------ACAAGTTCGCTATCAACAGGCGATATGTCACCCTATTTCT 40
consensus_13862#2 ------------------------------------------------------------
consensus_13862#4 ------------------------------------------------------------
consensus_13862#0 ATATGCAACCAACAACAAATGGCACGACACTTTTGAGCTTAGAGTTTCAATGCAGGAAAG 240
consensus_13862#3 ------------------------------------------------------------
consensus_13862#1 GTTGCTGTTCAACGACGTCCTTAAATAGGAGTACTTGTGCTACAAGCCTAACCCAGAGAT 100
consensus_13862#2 ------------------------------------------------------------
consensus_13862#4 ------------------------------------------------------------
consensus_13862#0 GAAGGTCAGGAAGCAGCCTGGTCGATCTTGGATCCACCTGAAGAATACTGTGCATACATT 300
consensus_13862#3 ------------------------------------------------------------
consensus_13862#1 AGCACCACAAATACCTCTCTTTTCTTTAGGTGTTTACTTCGACAGCTTCACCACCTTCGT 160
consensus_13862#2 ------------------------------------------------------------
consensus_13862#4 ------------------------------------------------------------
consensus_13862#0 TGTTGCAGGGGATGCGTCACACCCACAATCAGCTGAAATTTATGCTTACTTGGAGAAGCT 360
consensus_13862#3 ------------------------------------------------------------
consensus_13862#1 TTACCCATTGCCATGGCGGCTGAGAAGCGAACCATTGGGCTCGGCATGGACTACTCGCCG 220
consensus_13862#2 ------------------------------------------------------------
consensus_13862#4 ------------------------------------------------------------
consensus_13862#0 GGTGGAGAGACTGAAGGAGATTGGGTACACAAGTAGAACTGATCTTGTTGTTCATGATGT 420
consensus_13862#3 ------------------------------------------------------------
consensus_13862#1 TCGAGCAAGGCCGCGGCGAAGTGGGCGGTGGATAACC--TGGTGAAGGCC---GGCGACC 275
consensus_13862#2 ---------------------------CTGGATACCCCTTGGTNAAACCCCCGGNCAACC 33
consensus_13862#4 ------------------------------------------------------------
consensus_13862#0 AGAGGATGAACAAAGGGAAACAGCTCTTAAGTTCCACAGTGAGAAGCTGGCCATTGCATT 480
consensus_13862#3 ------------------------------------------------------------
consensus_13862#1 --GGATCATCCTC--GTCCATGTCCTT--CCCAAAGGAGC--AGATGCCAG--CCACAAG 325
consensus_13862#2 CGGAATCATCCCTCGNCCCATGTCCCTTCCCCAAAAGGACCAANATGCCCAGCCCACAAG 93
consensus_13862#4 ------------------------------------------------------------
consensus_13862#0 TGGGATCATCAGCACTCCAAGTGGGACTCCACTTAGGATCTTCAAGAATCTGCGTGTTTG 540
consensus_13862#3 -----AGATCAAAAGCCATACTTGTNCTGAGCTT-GGACGAANAATATTCTTCGTCTTTC 54
consensus_13862#1 GAGCTCTGGAA-GAGCACCGGCTC-ACCTTTGATTCC-TCTGC-TGGAGTTT-ATGG-AG 379
consensus_13862#2 GAGCTCTGGAAAGAGCACCGGCTNCACCTTTGATTCCCTCTGCCTGGAGTTTTATGG-AG 152
consensus_13862#4 ------------------------------------------------------------
consensus_13862#0 TGAGGATTGCCATGAAGCGATCAAGT-ACATAAGTCTGGCCACAGGTAGGGAAATAGTTG 599
consensus_13862#3 CA--GATGANTAGAGAGCCTTCTGGAGAGAGAAGCACCATCATGNCTG----------CC 102
consensus_13862#1 ATGAACGTGCAGGCGAGGTATGGGATCAACCCC-GATAA-GGAGGTACTGGAGATCCTGC 437
consensus_13862#2 ATGAACGTGCAGGCGAGGTATGGGATCAACCCCCGATAAAGGAGGTNCTGGAGATCCTGC 212
consensus_13862#4 ------------------------------------------------------------
consensus_13862#0 TTCGTGACTTGTATCGGTTTCATCATTTCAAGGATGCTAGTT-GTTCTTGTGAGGATTTC 658
consensus_13862#3 TATCTGGCGAACGNCCGATCGGCCATGTAAAGGAGAAAAGGCAGTTTGCACAAGGAATAA 162
consensus_13862#1 AAGCTGAATCCAAGTCCAAGCAGGTTGAAGTACTGGCAAAA-GTTTACTGGGGTGATGCA 496
consensus_13862#2 AAGCTGAATCCAAGTCCAAGCAGGTTGAAGTACTGGCAAAAAGTTTACTGGGGTGATGCA 272
consensus_13862#4 ------------------------------------------------------------
consensus_13862#0 TGGTGAAATTTTGTTGACCA-TTCATGATGACTAACTGAGTAACTGAAGATTGTTATGTA 717
consensus_13862#3 AGGC--AACCTAGTCTACAGGTTCGCTATCAACAGGCGA-TATGTCACCCTATTTCTGTT 219
consensus_13862#1 AGGGAGAAACTCTGTGAGGCAGTAGACGATCTCAAGGTGAATACCTTTGTTCTTGGTTGC 556
consensus_13862#2 AGGGAGAAACTCTGTGAGGCAGTAGACGATCTCAAGGTGAATNCCTTTGTTCTTGGTTGC 332
consensus_13862#4 ------------------------------------------------------------
consensus_13862#0 CTGCGTCGTGCACGTGCATGGCTGTACTAGAGATTGTGGCTCAAATGTATATTGATTTAA 777
consensus_13862#3 GCTGTTCAACGACGTCCTTAA--ATAGGAGTACTTGTGCTNCAAGC-----CTAACCCAG 272
consensus_13862#1 AGGGGACTAGGA---------CCCTTGAAAAGGGCCCTACTTGGA--AGTGTTAGCAACT 605
consensus_13862#2 AGGGGACTAGGA---------CCCTTGAAAAGGGCCCTACTTGGA--AGTGTTAGCAACT 381
consensus_13862#4 -------------------------------ATGTGCTGATGGGCTTGACATAGGGATCT 29
consensus_13862#0 GGAGAATTCCTTATTAGCCATCTGATGCCAAGTATATTCCTCATC----TGCGGAGAAGC 833
consensus_13862#3 AGATAGCACCN-----------------CAAATACCTCTCTTTTC----TTTAGGTGTTT 311
*
consensus_13862#1 ATGTTGTCAA-CAATGCAACCTGCCCGGTTACTGTGGTGCGTGCACCAACCGTGTCAAAT 664
consensus_13862#2 ATGTTGTCAA-CAATGCAACCTGCCCGGTTACTGTGGTGCGTGCACCAACCGTGTCAAAT 440
consensus_13862#4 GGGCTG--GA-AATTGGGATATGGGCTGGGGCTGTTGTGTGTGTGGGCTGGGTGTGCAAT 86
consensus_13862#0 GCATTAACAGGCTACCTCACCTTGATGAGCCAGACATCCTCACCTCCACCTACGAACCAT 893
consensus_13862#3 ACTTCGACAG-CTTCACCACCTTCGTTTACC---CATTGCCATGGCGGCTGAGAAGCGA- 366
* * *
consensus_13862#1 GCCTGATTCTATGCTACATGGGACTGCTGGAAATTGGAATG-CTGGGCTTGTTTTGCTGT 723
consensus_13862#2 GCCTGATTCTATGCTACATGGGACTGCTGGAAATTGGAATG-CTGGGCTTGTTTTGCTGT 499
consensus_13862#4 GCCCATGCTGTTGTAGCAAGAG------GAACACTTGCATG-CTGGAGTTG----GGTGC 135
consensus_13862#0 TATCATCGGCAGTCGGCATGGACTACTCGCCATTTAGCAAGGCTGTGGTGAGGCAGGCGG 953
consensus_13862#3 -ACCATTGG-GCTCGGCATGGACTACTCGCCATCGAGCAAGGCCGCGGCGAAGTGGGCGG 424
** * * * * * * * * *
consensus_13862#1 TCATCCATCTTTTAGCAGAGAACCTTCATCTGAGTTGGTGCCATTGCAAGGATTGGTCTC 783
consensus_13862#2 TCATCCATCTTTTAGCAGAGAACCTTCATCTGAGTTGGTGCCATTGCAAGGATTGGTCTC 559
consensus_13862#4 ACAA-------TTGGCAAAGGATTGGTGCT---GCTGGCTGCCTGGCAA--CTTGAGCTG 183
consensus_13862#0 TGGATAA---CCTGGTGAAGGCCAGCAACT--GGATCATCCTGATCCATGTCCTTCCCAG 1008
consensus_13862#3 TGGATAA---CCTGGTGAAGGCCGGCGACC--GGATCATCCTCGTCCATGTCCTTCCCAA 479
* * ** * * ** * *
consensus_13862#1 TGGCTCCTGCACTTAGCTTTTCCATG-CTATTGGAATGTTATT--AAG-TTGAATCTTCG 839
consensus_13862#2 TGGCTCCTGCACTTAGCTTTTCCATG-CTATTGGAATGTTATT--AAG-TTGAATCTTCG 615
consensus_13862#4 TGTGTGCCATGGCTGATGTGGGAATGGTTGATTGAAAGTTGGA--ATGCTTGCGGTGGTG 241
consensus_13862#0 AGGAGCAGATGCCAGCCACAAGGAGCTCTGGAAGAGCACCGGCTCACACATGCAGAGGCA 1068
consensus_13862#3 AGGAGCAGATGCCAGCCACAAGGAGCTCTGGAAGAGCACCGGCTCACGTATGTAGGGGCA 539
* * * ** * **
consensus_13862#1 GTGTATTTCCTTCTG-TTACTTCCTATGTATAGTTCATTACTACTGTTTAATGGTGAATG 898
consensus_13862#2 GTGTATTTCCTTCTG-TTACTTCCTATGTATAGTTCATTACTACTGTTTAATGGTGAATG 674
consensus_13862#4 ATGTTGCCTGTGCTGGTTACTTCCTATGTATAGTTCATTACTACTGTTTAATGGTGAATG 301
consensus_13862#0 TTGCAATTT-TTCTG-CTGCTTCTCTTGTTCAGCAAATTCTGACTGCTGCTTCTCTTGTT 1126
consensus_13862#3 TTGCATTTT-TTTTT-CT--TTTGCCTTTTCAGTTTCTTCTCTGTTCCCCCTGTCNNGTC 595
** * * * ** * * ** ** * * *
consensus_13862#1 TTAAAGATTGCCAATGGTGTGCTTG----CTTTAAAAAAA-------------------- 934
consensus_13862#2 TTAAAGATTGCCAAAAAAAAAAAAA----AAAAAAAAAA--------------------- 709
consensus_13862#4 TTAAAGATTGCCAATGGTGTGCTTGCTTTATGTAAAAAAAA------------------- 342
consensus_13862#0 CAACAAATT-CTGACGCAGAAAGCTTAACAGGGAGGTGTTGGGTCAACCCTGATAAGGAG 1185
consensus_13862#3 CTCNNA----CAAGCNTNGCGANTCC---------------------------------- 617
*
consensus_13862#1 ------------------------------------------------------------
consensus_13862#2 ------------------------------------------------------------
consensus_13862#4 ------------------------------------------------------------
consensus_13862#0 GTACTAGCGATCCTGCAAGCTGAATCGAAGTCCAAGCAGGTAATGACTCAGCTTTGCCAG 1245
consensus_13862#3 ------------------------------------------------------------
consensus_13862#1 ------------------------------------------------------------
consensus_13862#2 ------------------------------------------------------------
consensus_13862#4 ------------------------------------------------------------
consensus_13862#0 AAGATCACCCACCTTTGTATTTGGGTGGTTTGTGAGGAATTCTGCATAGGGGACAGGCGA 1305
consensus_13862#3 ------------------------------------------------------------
consensus_13862#1 ------------------------------------------------------------
consensus_13862#2 ------------------------------------------------------------
consensus_13862#4 ------------------------------------------------------------
consensus_13862#0 ATTATGCTTGATGGTTCTATAGTTGTAACAATCTGCAACTGCCTGGGCGTCTGTACAGAC 1365
consensus_13862#3 ------------------------------------------------------------
consensus_13862#1 ------------------------------------------------------------
consensus_13862#2 ------------------------------------------------------------
consensus_13862#4 ------------------------------------------------------------
consensus_13862#0 TATGCTTGAGGTTCACCATTCCATTTCCCATGCTGGCATTCTCATTTTTCTTGGTTAGGA 1425
consensus_13862#3 ------------------------------------------------------------
consensus_13862#1 ------------------------------------------------------------
consensus_13862#2 ------------------------------------------------------------
consensus_13862#4 ------------------------------------------------------------
consensus_13862#0 CAAGAGCTTCTTGACATTCATTGACAAGTGTATTGAAGGTTCTTATTTTGTAATGTCATA 1485
consensus_13862#3 ------------------------------------------------------------
consensus_13862#1 ------------------------------------------------------------
consensus_13862#2 ------------------------------------------------------------
consensus_13862#4 ------------------------------------------------------------
consensus_13862#0 GTAAATTCCTTGTTTGGGGTCATGTCTGCAGTTTGCAAGGAGTCCAGGGAAGGTTCACAC 1545
consensus_13862#3 ------------------------------------------------------------
consensus_13862#1 ------------------------------------------------------------
consensus_13862#2 ------------------------------------------------------------
consensus_13862#4 ------------------------------------------------------------
consensus_13862#0 TTGAACCCAAGCAGTGGGCTGTTCCAACCAAATGAGAAGAAGGATGTGGTAACATCAACT 1605
consensus_13862#3 ------------------------------------------------------------
consensus_13862#1 ------------------------------------------------------------
consensus_13862#2 ------------------------------------------------------------
consensus_13862#4 ------------------------------------------------------------
consensus_13862#0 GGCTAGCAATGGTTGGGATTCTCGCTGGTTACCTTTGTGATGGGGCCTCTTAAGATGTTA 1665
consensus_13862#3 ------------------------------------------------------------
consensus_13862#1 ------------------------------------------------------------
consensus_13862#2 ------------------------------------------------------------
consensus_13862#4 ------------------------------------------------------------
consensus_13862#0 AAGCTCTATGCTGTTCCTTACATGATATTGTCATGTGGTTGGATTTTGTCACATACTTGC 1725
consensus_13862#3 ------------------------------------------------------------
consensus_13862#1 ------------------------------------------------------------
consensus_13862#2 ------------------------------------------------------------
consensus_13862#4 ------------------------------------------------------------
consensus_13862#0 ACCATCATGGCCATGAAGAAGCTTCCCTGGCACCATGGAAGAGTAAATAACATTATTAAT 1785
consensus_13862#3 ------------------------------------------------------------
consensus_13862#1 ------------------------------------------------------------
consensus_13862#2 ------------------------------------------------------------
consensus_13862#4 ------------------------------------------------------------
consensus_13862#0 GTTGTGGGATTGCTATTTGTCAATGATGCAAGGATGGCCACTAGGGTATAGTCCATTTTT 1845
consensus_13862#3 ------------------------------------------------------------
consensus_13862#1 ------------------------------------------------------------
consensus_13862#2 ------------------------------------------------------------
consensus_13862#4 ------------------------------------------------------------
consensus_13862#0 GTTCAACATAGGGCATAGTCTAGTTTTGTTCAACATAGGGCATAGTCCATTTTTGTTTGC 1905
consensus_13862#3 ------------------------------------------------------------
consensus_13862#1 ------------------------------------------------------------
consensus_13862#2 ------------------------------------------------------------
consensus_13862#4 ------------------------------------------------------------
consensus_13862#0 TAAATGGCAGAAGGTTTATTTGTTCAAACATAGGTTCTGCGTGTAAAAATTATTGAGTAG 1965
consensus_13862#3 ------------------------------------------------------------
consensus_13862#1 ------------------------------------------------------------
consensus_13862#2 ------------------------------------------------------------
consensus_13862#4 ------------------------------------------------------------
consensus_13862#0 AGATTTATGCCTTTAAAGATAATTAGCTGAATTTCCCGTGCAACTAAACTAAATGATTAT 2025
consensus_13862#3 ------------------------------------------------------------
consensus_13862#1 -------------------------------------------------
consensus_13862#2 -------------------------------------------------
consensus_13862#4 -------------------------------------------------
consensus_13862#0 GTGAAAGTAGAATTGTATTTGACATACAACTCTTGCATCTATATATGTA 2074
consensus_13862#3 -------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||