cluster # 13878

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Oryza sativa
cluster # 13878 cluster # 13878 Sequences # 14 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13878#0 length = 1361 sequences # 9
consensus_13878#1 length = 1202 sequences # 2

consensus_13878#2 length = 1034 sequences # 2
consensus_13878#3 length = 550 sequences # 1

consensusID : consensus_13878#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1361
fasta sequence

                              [TTCCTCGAGCACTGTTGGCCTACTGG-AGCGAAGCGCTATCCACCCAGAGCGGAGCCTTGGCATCCCTACAATGGCGGCACACTCCCACGTCATCCCCTTCCTCTCCCCGGCGGCGACGTCCGCGCGCTGCTCCCCCTACGGCCACCGCCGCCGCGGCCGCGCGGGGCTCCTGCGGTG-CGCGGCGGCGGCGGGGCAGGCGGGGTTCTTCACCCGCCTGGGACGCCTCATCCAGGAGAAGGCCAAGAGCGACGTCGAGAAGCTCTTCTCCGGCTTCTCCAAGACCCGCGAGAGCCTCTCCGTCGTCGACGAGCTCCTCACCTACTGGAACCTCGCCGACACCGACCGCGTCCTCGACGAGCTCGAGGAGGCTCTGCTGGTGTCGGATTTTGGCCCCAAGATTTCGTTCCGGATCGTGGACACTCTACGCGAGGAAATCCGCGATGGCAAGCTCAAGTCTGGGGCTGAGATAAAGGAAGCGCTGAAAAGGTGTATTCTTGAACTGCTGACGAGCAAAGGCGGCAATCCGGAGCTGCAGCTCGGTTTCAGAAAGCCGGCAGTTATCATGATTGTGGGAGTGAATGGAGGT-GGAAAGACTACCTCATTAGGAAAACTTGCTTACAGATTCAAGAATGAAGGAGTGAAGGTATTGATGGCAGCAGGTGATACCTTCAGAGCAGCAGCTCGTGACCAGCTAGAAGTTTGGGCAGAGAGAACAGGTTCAGAGATTGTTATCGATAATGATAAGAAAGCAAAACCTGCATCAGTTCTCTCGCAGGCAGTGAAGCGCGGGAAGCGTGAAGGATTTGATCTTGTTCTTTGCGACACGTCAGGACGACTTCATACAAATTATGGTCTGATGGAAGAATTGGTTTCCTGCAAGAAAGTCATAGC-TAAAGCCCTTCCGGGTGCTCCTAATGAGATCTTGCTGGTTCTGGATGGCACGACTGGCTTGAATATGCTACAACAAGCGAGGGAGTTCAATGATGTTGTTGGAGTCACAGGATTCGTCCTAACAAAGCTTGATGGAACTGCTCGTGGTGGTTGTGTGGTTAGCGTTGTAGATGAACTTGGAATTCCAGTAAAGTTTATTGGTGTTGGTGAAGGGATGGAGGATCTTCAGCCTTTTGATGCTGAGGCATTTGTTGAAGCCATTTTTCCTTGAGCTAGGACGCTTTGTTTTTTGAGATGGAGAATTTGAAGTTTCGGAGAGAGCATGTTTGCTTACTTGTACATCATTCTGGTTTTTCACTCCTGTGACAATTTCACTATGTGTCCATCCTTTCATGTAATATATATTTGCTAACATGCTAGGAAATTAGAAGCAAAATTTTGGACCAACAAAAAAAAAAAAGGCCACATGT]

[+] EMBL AK109369             [TTCCTCGAGCACTGTTGGCCTACTGG AGCGAAGCGCTATCCACCCAGAGCGGAGCCTTGGCATCCCTACAATGGCGGCACACTCCCACGTCATCCCCTTCCTCTCCCCGGCGGCGACGTCCGCGCGCTGCTCCCCCTACGGCCACCGCCGCCGCGGCCGCGCGGGGCTCCTGCGGTG CGCGGCGGCGGCGGGGCAGGCGGGGTTCTTCACCCGCCTGGGACGCCTCATCCAGGAGAAGGCCAAGAGCGACGTCGAGAAGCTCTTCTCCGGCTTCTCCAAGACCCGCGAGAGCCTCTCCGTCGTCGACGAGCTCCTCACCTACTGGAACCTCGCCGACACCGACCGCGTCCTCGACGAGCTCGAGGAGGCTCTGCTGGTGTCGGATTTTGGCCCCAAGATTTCGTTCCGGATC  GGACACTCTACGCGAGGAAATCCGCGATGGCAAGCTCAAGTCTGGGGCTGAGATAAAGGAAGCGCTGAAAAGGTGTATTCTTGAACTGCTGACGAGCAAAGGCGGCAATCCGGAGCTGCAGCTCGGTTTCAGAAAGCCGGCAGTTATCATGATTGTGGGAGTGAATGGAGGT GGAAAGACTACCTCATTAGGAAAACTTGCTTACAGATTCAAGAATGAAGGAGTGAAGGTATTGATGGCAGCAGGTGATACCTTCAGAGCAGCAGCTCGTGACCAGCTAGAAGTTTGGGCAGAGAGAACAGGTTCAGAGATTGTTATCGATAATGATAAGAAAGCAAAACCTGCATCAGTTCTCTCGCAGGCAGTGAAGCGCGGGAAGCGTGAAGGATTTGATCTTGTTCTTTGCGACACGTCAGGACGACTTCATACAAATTATGGTCTGATGGAAGAATTGGTTTCCTGCAAGAAAGTCATAGC TAAAGCCCTTCCGGGTGCTCCTAATGAGATCTTGCTGGTTCTGGATGGCACGACTGGCTTGAATATGCTACAACAAGCGAGGGAGTTCAATGATGTTGTTGGAGTCACAGGATTCGTCCTAACAAAGCTTGATGGAACTGCTCGTGGTGGTTGTGTGGTTAGCGTTGTAGATGAACTTGGAATTCCAGTAAAGTTTATTGGTGTTGGTGAAGGGATGGAGGATCTTCAGCCTTTTGATGCTGAGGCATTTGTTGAAGCCATTTTTCCTTGAGCTAGGACGCTTTGTTTTTTGAGATGGAGAATTTGAAGTTTCGGAGAGAGCATGTTTGCTTACTTGTACATCATTCTGGTTTTTCACTCCTGTGACAATTTCACTATGTGTCCATCCTTTCATGTAATATATATTTGCTAACATGCTAGGAAATTAGAAGCAAAATTTTGGACCAAAAAAAAAAAAAAAGGCCACATGT]
[+] EMBL AK058574             [                 ccgtttTGGCAGCGAAGCGCTATCCACCCAGAGCGGAGCCTTGGCATCCCTACAATGGCGGCACACTCCCACGTCATCCCCTTCCTCTCCCCGGCGGCGACGTCCGCGCGCTGCTCCCCCTACGGCCACCGCCGCCGCGGCCGCGCGGGGCTCCTGCGGTG CGCGGCGGCGGCGGGGCAGGCGGGGTTCTTCACCCGCCTGGGACGCCTCATCCAGGAGAAGGCCAAGAGCGACGTCGAGAAGCTCTTCTCCGGCTTCTCCAAGACCCGCGAGAGCCTCTCCGTCGTCGACGAGCTCCTCACCTACTGGAACCTCGCCGACACCGACCGCGTCCTCGACGAGCTCGAGGAGGCTCTGCTGGTGTCGGATTTTGGCCCCAAGATTTCGTTCCGGATCGTGGACACTCTACGCGAGGAAATCCGCGATGGCAAGCTCAAGTCTGGGGCTGAGATAAAGGAAGCGCTGAAAAGGTGTATTCTTGAACTGCTGACGAGCAAAGGCGGCAATCCGGAGCTGCAGCTCGGTTTCAGAAAGCCGGCAGTTATCATGATTGTGGGAGTGAATGGAGGT GGAAAGACTACCTCATTAGGAAAACTTGCTTACAGATTCAAGAATGAAGGAGTGAAGGTATTGATGGCAGCAGGTGATACCTTCAGAGCAGCAGCTCGTGACCAGCTAGAAGTTTGGGCAGAGAGAACAGGTTCAGAGATTGTTATCGATAATGATAAGAAAGCAAAACCTGCATCAGTTCTCTCGCAGGCAGTGAAGCGCGGGAAGCGTGAAGGATTTGATCTTGTTCTTTGCGACACGTCAGGACGACTTCATACAAATTATGGTCTGATGGAAGAATTGGTTTCCTGCAAGAAAGTCATAGC TAAAGCCCTTCCGGGTGCTCCTAATGAGATCTTGCTGGTTCTGGATGGCACGACTGGCTTGAATATGCTACAACAAGCGAGGGAGTTCAATGATGTTGTTGGAGTCACAGGATTCGTCCTAACAAAGCTTGATGGAACTGCTCGTGGTGGTTGTGTGGTTAGCGTTGTAGATGAACTTGGAATTCCAGTAAAGTTTATTGGTGTTGGTGAAGGGATGGAGGATCTTCAGCCTTTTGATGCTGAGGCATTTGTTGAAGCCATTTTTCCTTGAGCTAGGACGCTTTGTTTTTTGAGATGGAGAATTTGAAGTTTCGGAGAGAGCATGTTTGCTTACTTGTACATCATTCTGGTTTTTCACTCCTGTGACAATTTCACTATGTGTCCATCCTTTCATGTAATATATATTTGCTAACATGCTAGGAAATTAGAAGCAAAATTTTGGACCATCAc                    ]
[+] EMBL CB658925             [                                                                                     CCACGTCATCCCCTTCCTCTCCCCGGCGGCGACGTCCGCGCGCTGCTCCCCCTACGGCCACCGCCGCCGCGGCCGCGCGGGGCTCCTGCGGTG CGCGGCGGCGGCGGGGCAGGCGGGGTTCTTCACCCGCCTGGGACGCCTCATCCAGGAGAAGGCCAAGAGCGACGTCGAGAAGCTCTTCTCCGGCTTCTCCAAGACCCGCGAGAGCCTCTCCGTCGTCGACGAGCTCCTCACCTACTGGAACCTCGCCGACACCGACCGCGTCCTCGACGAGCTCGAGGAGGCTCTGCTGGTGTCGGATTTTGGCCCCAAGATTTCGTTCCGGATCGTGGACACTCTACGCGAGGAAATCCGCGATGGCAAGCTCAAGTCTGGGGCTGAGATAAAGGAAGCGCTGAAAAGGTGTATTCTTGAACTGCTGACGAGCAAAGGCGGCAATCCGGAGCTGCAGCTCGGTTTCAGAAAGCCGGCAGTTATCATGATTGTGGGAGTGAATGGAGGT GGAAAGACTACCTCATTAGGAAAACTTGCTTACAGATTCAAGAATGAAGGAGTGAAGGTATTGATGGCAGCAGGTGATACCTTCAGAGCAGCAGCTCGTGACCAGCTAGAAGTTTGGGCAGAGAGAACAGGTTCAGAGATTGTTATCGATAATGATAAGAAAGCAAAACCTGCATCAGTTCTCTCGCAGGCAGTGAAGCGCGGGAAGCGTGAAGGATTTGATCTTGTTCTTTGCGACACGTCAGGACGACTTCATACAAATTATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BU673756             [                                                                                                                                                           GGGCGCGC GGGCT CTGCGGTG CGCGGCGGCGGC GGGCAGGCGGGGTTCTTCACCCGCCTGGGACGCCTCATCCAGGAGAAGGCCAAGAGCGACGTCGAGAAGCTCTTCTCCGGCTTCTCCAAGACCCGCGAGAGCCTCTCCGTCGTCGACGAGCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CB965267             [                                                                                                                                                                   GGGGCTCCTGCGGTG CGCGGCGGCGGCGGGGCAGGCGGGGTTCTTCACCCGCCTGGGACGCCTCATCCAGGAGAAGGCCAAGAGCGACGTCGAGAAGCTCTTCTCCGGCTTCTCCAAGACCCGCGAGAGCCTCTCCGTCGTCGACGAGCTCCTCACCTACTGGAACCTCGCCGACACCGACCGCGTCCTCGACGAGCTCGAGGAGGCTCTGCTGGTGTCGGATTTTGGCCCCAAGATTTCGTTCCGGATCGTGGACACTCTACGCGAGGAAATCCGCGATGGCAAGCTCAAGTCTGGGGCTGAGATAAAGGAAGCGCTGAAAAGGTGTATTCTTGAACTGCTGACGAGCAAAGGCGGCAATCCGGAGCTGCAGCTCGGTTTCAGAAAGCCGGCAGTTATCATGATTGTGGGAGTGAATGGAGGT GGAAAGACTACCTCATTAGGAAAACTTGCTTACAGATTCAAGAATGAAGGAGTGAAGGTATTGATGGCAGCAGGTGATACCTTCAGAGCAGCAGCTCGTGACCAGCTAGAAGTTAGGGCAGAGAGAACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CB965886             [                                                                                                                                                                  aGGGGCTCCTGCGGTGCCGCGGCGGCGGC GGGCAGGCGGGGTTCTTCACCCGCCTGGGACGCCTCATCCAGGAGAAGGCCAAGAGCGACGTCGAGAAGCTCTTCTCCGGCTTCTCCAAGACCCGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BI306556             [                                                                                                                                                                    GGGCTCCTGCGGTG CGCGGCGGCGGCGGGGCAGGCGGGGTTCTTCACCCGCCTGGGACGCCTCATCCAGGAGAAGGCCAAGAGCGACGTCGAGAAGCTCTTCTCCGGCTTCTCCAAGACCCGCGAGAGCCTCTCCGTCGTCGACGAGCTCCTCACCTACTGGAACCTCGCCGACACCGACCGCGTCCTCGACGAGCTCGAGGAGGCTCTGCTGGTGTCGGATTTTGGCCCCAAGATTTCGTTCCGGATCGTGGACACTCTACGCGAGGAAATCCGCGATGGCAAGCTCAAGTCTGGGGCTGAGATAAAGGAAGCGCTGAAAAGGTGTATTCTTGAACTGCTGACGAGCAAAGGCGGCAATCCGGAGCTGCAGCTCGGTTTCAGAAAGCCGGCAGTTATCATGATTGTGGGAGTGAATGGAGGTNGGAAAGACTACCTCATTAGGAAAACTTGCTTACAGATTCAAGAATGAAGGAGTGAAGGTATTGATGGCAGCAGGTGATACCTTCAGAGCAGCAGCTCGTGACCAGCTAGAAGTTTGGGCAGAGAGAACAGGTTCAGAGATTGTTATCGATAATGATAAGAAAGCAAAACCTGCATCAGTTCTCTCGCAGGCAGTGAAGCGCGGGAAGCGTGAAGGATTTGATCTTGTTCTTTGCGACACGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CB965597             [                                                                                                                                                                     GGCTCCTGCGGTG CGCGGCGGCGGCGGGGCAGGCGGGGTTCTTCACCCGCCTGGGACGCCTCATCCAGGAGAAGGCCAAGAGCGACGTCGAGAAGCTCTTCTCCGGCTTCTCCAAGACCCGCGAGAGCCTCTCCGTCGTCGACGAGCTCCTCACCTACTGGAACCTCGCCGACACCGACCGCGTCCTCGACGAGCTCGAGGAGGCTCTGCTGGTGTCGGATTTTGGCCCCAAGATTTCGTTCCGGATCGTGGACACTCTACGCGAGGAAATCCGCGATGGCAAGCTCAAGTCTGGGGCTGAGATAAAGGAAGCGCTGAAAAGGTGTATTCTTGAACTGCTGACGAGCAAAGGCGGCAATCCGGAGCTGCAGCTCGGTTTCAGAAAGCCGGCAGTTATCATGATTGTGGGAGTGAATGGAGGT GGAAAGACTACCTCATTAGGAAAACTTGCTTACAGATTCAAGAATGAAGGAGTGAAGGTATTGATGGCAGCAGGTGATACCTTCAGAGCAGCAGCTCGTGACCAGCTAGAAGTTTGGGCAGAGAGAACAGGTTCAGAGATTGTTATCGATAATGATAAGAAAGCAAAACCTGCATCAGTTCTCTCGCAGGCAGTGAAGCGCGGGAAGCGTGAAGGATTTGATCTTGTTCTTTGCGACACGTCAGGACGACTTCATACCAATTATGGTCTGGTGGGAG ACTGG TTCCTGCAAG AAGGCTTAGCTTAAAG CCTTCGGGGgg                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CB683613             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AAGACTACCTCATTAGGAAAACTTGCTTACAGATTCAAGAATGAAGGAGTGAAGGTATTGATGGCAGCAGGTGATACCTTCAGAGCAGCAGCTCGTGACCAGCTAGAAGTTTGGGCAGAGAGAACAGGTTCAGAGATTGTTATCGATAATGATAAGAAAGCAAAACCTGCATCAGTTCTCTCGCAGGCAGTGAAGCGCGGGAAGCGTGAAGGATTTGATCTTGTTCTTTGCGACACGTCAGGACGACTTCATACAAATTATGGTCTGATGGAAGAATTGGTTTCCTGCAAGAAAGTCATAGC TAAAGCCCTTCCGGGTGCTCCTAATGAGATCTTGCTGGTTCTGGATGGCACGACTGGCTTGAATATGCTACAACAAGCGAGGGAGTTCAATGATGTTGTTGGAGTCACAGGATTCGTCCTAACAAAGCTTGATGGAACTGCTCGTGGTGGTTGTGTGGTTAGCGTTGTAGATGAACTTGGAATTCCAGTAAAGTTTATTGGTGTTGGTGAAGGGATGGAGGATCTTCAGCCTTTTGATGCTGAGGCATTTGTTGAAGCCATTTTTCCTTGAGCTAGGACGCTTTGTTTTTTGAGATGGAGAATTTGAAGTTTCGGAGAGAGCATGTTTGCTTACTTGTACATCATTCTGGTTTTTCACTCCTGTGACAATTTCACTATGTGTCCATCCTTTCATGTAATATATATTTGCTAACAGGCTAGGAAATTAGAAGCAAAATTTTGGACCAACTAAAAAga              ]




>consensus_13878#0
TTCCTCGAGCACTGTTGGCCTACTGGAGCGAAGCGCTATCCACCCAGAGCGGAGCCTTGG
CATCCCTACAATGGCGGCACACTCCCACGTCATCCCCTTCCTCTCCCCGGCGGCGACGTC
CGCGCGCTGCTCCCCCTACGGCCACCGCCGCCGCGGCCGCGCGGGGCTCCTGCGGTGCGC
GGCGGCGGCGGGGCAGGCGGGGTTCTTCACCCGCCTGGGACGCCTCATCCAGGAGAAGGC
CAAGAGCGACGTCGAGAAGCTCTTCTCCGGCTTCTCCAAGACCCGCGAGAGCCTCTCCGT
CGTCGACGAGCTCCTCACCTACTGGAACCTCGCCGACACCGACCGCGTCCTCGACGAGCT
CGAGGAGGCTCTGCTGGTGTCGGATTTTGGCCCCAAGATTTCGTTCCGGATCGTGGACAC
TCTACGCGAGGAAATCCGCGATGGCAAGCTCAAGTCTGGGGCTGAGATAAAGGAAGCGCT
GAAAAGGTGTATTCTTGAACTGCTGACGAGCAAAGGCGGCAATCCGGAGCTGCAGCTCGG
TTTCAGAAAGCCGGCAGTTATCATGATTGTGGGAGTGAATGGAGGTGGAAAGACTACCTC
ATTAGGAAAACTTGCTTACAGATTCAAGAATGAAGGAGTGAAGGTATTGATGGCAGCAGG
TGATACCTTCAGAGCAGCAGCTCGTGACCAGCTAGAAGTTTGGGCAGAGAGAACAGGTTC
AGAGATTGTTATCGATAATGATAAGAAAGCAAAACCTGCATCAGTTCTCTCGCAGGCAGT
GAAGCGCGGGAAGCGTGAAGGATTTGATCTTGTTCTTTGCGACACGTCAGGACGACTTCA
TACAAATTATGGTCTGATGGAAGAATTGGTTTCCTGCAAGAAAGTCATAGCTAAAGCCCT
TCCGGGTGCTCCTAATGAGATCTTGCTGGTTCTGGATGGCACGACTGGCTTGAATATGCT
ACAACAAGCGAGGGAGTTCAATGATGTTGTTGGAGTCACAGGATTCGTCCTAACAAAGCT
TGATGGAACTGCTCGTGGTGGTTGTGTGGTTAGCGTTGTAGATGAACTTGGAATTCCAGT
AAAGTTTATTGGTGTTGGTGAAGGGATGGAGGATCTTCAGCCTTTTGATGCTGAGGCATT
TGTTGAAGCCATTTTTCCTTGAGCTAGGACGCTTTGTTTTTTGAGATGGAGAATTTGAAG
TTTCGGAGAGAGCATGTTTGCTTACTTGTACATCATTCTGGTTTTTCACTCCTGTGACAA
TTTCACTATGTGTCCATCCTTTCATGTAATATATATTTGCTAACATGCTAGGAAATTAGA
AGCAAAATTTTGGACCAACAAAAAAAAAAAAGGCCACATGT

consensusID : consensus_13878#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1202
fasta sequence

                              [ACTCCCACGTCATCCCCTTCCTCTCCCCGGCGGCGACGTCCGCGCGCTGCTCCCCCTACGGCGGCGGGGCAGGCGGGGTTCTTCACCCGCCTGGGACGCCTCATCCAGGAGAAGGCCAAGAGCGACGTCGAGAAGCTCTTCTCCGGCTTCTCCAAGACCCGCGAGAGCCTCTCCGTCGTCGACGAGCTCCTCACCTACTGGAACCTCGCCGACACCGACCGCGTCCTCGACGAGCTCGAGGAGGCTCTGCTGGTGTCGGATTTTGGCCCCAAGATTTCGTTCCGGATCGTGGACACTCTACGCGAGGAAATCCGCGATGGCAAGCTCAAGTCTGGGGCTGAGATAAAGGAAGCGCTGAAAAGGTGTATTCTTGAACTGCTGACGAGCAAAGGCGGCAATCCGGAGCTGCAGCTCGGTTTCAGAAAGCCGGCAGTTATCATGATTGTGGGAGTGAATGGAGGTGGAAAGACTACCTCATTAGGAAAACTTGCTTACAGATTCAAGAATGAAGGAGTGAAGGTATTGATGGCAGCAGGTGATACCTTCAGAGCAGCAGCTCGTGACCAGCTAGAAGTTTGGGCAGAGAGAACAGGTTCAGAGATTGTTATCGATAATGATAAGAAAGCAAAACCTGCATCAGTTCTCTCGCAGGCAGTGAAGCGCGGGAAGCGTGAAGGATTTGATCTTGTTCTTTGCGACACGTCAGGACGACTTCATACAAATTATGGTCTGATGGAAGAATTGGTTTCCTGCAAGAAAGTCATAGCTAAAGCCCTTCCGGGTGCTCCTAATGAGATCTTGCTGGTTCTGGATGGCACGACTGGCTTGAATATGCTACAACAAGCGAGGGAGTTCAATGATGTTGTTGGAGTCACAGGATTCGTCCTAACAAAGCTTGATGGAACTGCTCGTGGTGGTTGTGTGGTTAGCGTTGTAGATGAACTTGGAATTCCAGTAAAGTTTATTGGTGTTGGTGAAGGGATGGAGGATCTTCAGCCTTTTGATGCTGAGGCATTTGTTGAAGCCATTTTTCCTTGAGCTAGGACGCTTTGTTTTTTGAGATGGAGAATTTGAAGTTTCGGAGAGAGCATGTTTGCTTACTTGTACATCATTCTGGTTTTTCACTCCTGTGACAATTTCACTATGTGTCCATCCTTTCATGTAATATATATTTGCTAACATGCTAGGAAATTAGAAGCAAA]

[+] EMBL AK103090             [ACTCCCACGTCATCCCCTTCCTCTCCCCGGCGGCGACGTCCGCGCGCTGCTCCCCCTACGGCGGCGGGGCAGGCGGGGTTCTTCACCCGCCTGGGACGCCTCATCCAGGAGAAGGCCAAGAGCGACGTCGAGAAGCTCTTCTCCGGCTTCTCCAAGACCCGCGAGAGCCTCTCCGTCGTCGACGAGCTCCTCACCTACTGGAACCTCGCCGACACCGACCGCGTCCTCGACGAGCTCGAGGAGGCTCTGCTGGTGTCGGATTTTGGCCCCAAGATTTCGTTCCGGATCGTGGACACTCTACGCGAGGAAATCCGCGATGGCAAGCTCAAGTCTGGGGCTGAGATAAAGGAAGCGCTGAAAAGGTGTATTCTTGAACTGCTGACGAGCAAAGGCGGCAATCCGGAGCTGCAGCTCGGTTTCAGAAAGCCGGCAGTTATCATGATTGTGGGAGTGAATGGAGGTGGAAAGACTACCTCATTAGGAAAACTTGCTTACAGATTCAAGAATGAAGGAGTGAAGGTATTGATGGCAGCAGGTGATACCTTCAGAGCAGCAGCTCGTGACCAGCTAGAAGTTTGGGCAGAGAGAACAGGTTCAGAGATTGTTATCGATAATGATAAGAAAGCAAAACCTGCATCAGTTCTCTCGCAGGCAGTGAAGCGCGGGAAGCGTGAAGGATTTGATCTTGTTCTTTGCGACACGTCAGGACGACTTCATACAAATTATGGTCTGATGGAAGAATTGGTTTCCTGCAAGAAAGTCATAGCTAAAGCCCTTCCGGGTGCTCCTAATGAGATCTTGCTGGTTCTGGATGGCACGACTGGCTTGAATATGCTACAACAAGCGAGGGAGTTCAATGATGTTGTTGGAGTCACAGGATTCGTCCTAACAAAGCTTGATGGAACTGCTCGTGGTGGTTGTGTGGTTAGCGTTGTAGATGAACTTGGAATTCCAGTAAAGTTTATTGGTGTTGGTGAAGGGATGGAGGATCTTCAGCCTTTTGATGCTGAGGCATTTGTTGAAGCCATTTTTCCTTGAGCTAGGACGCTTTGTTTTTTGAGATGGAGAATTTGAAGTTTCGGAGAGAGCATGTTTGCTTACTTGTACATCATTCTGGTTTTTCACTCCTGTGACAATTTCACTATGTGTCCATCCTTTCATGTAATATATATTTGCTAACATGCTAGGAAATTAGAAGCAAA]
[-] EMBL CB658926             [                                                                                                                                                                                                                                                                                                                                                                          GTGTATTCTTGAACTGCTGACGAGCAAAGGCGGCAATCCGGAGCTGCAGCTCGGTTTCAGAAAGCCGGCAGTTATCATGATTGTGGGAGTGAATGGAGGTGGAAAGACTACCTCATTAGGAAAACTTGCTTACAGATTCAAGAATGAAGGAGTGAAGGTATTGATGGCAGCAGGTGATACCTTCAGAGCAGCAGCTCGTGACCAGCTAGAAGTTTGGGCAGAGAGAACAGGTTCAGAGATTGTTATCGATAATGATAAGAAAGCAAAACCTGCATCAGTTCTCTCGCAGGCAGTGAAGCGCGGGAAGCGTGAAGGATTTGATCTTGTTCTTTGCGACACGTCAGGACGACTTCATACAAATTATGGTCTGATGGAAGAATTGGTTTCCTGCAAGAAAGTCATAGCTAAAGCCCTTCCGGGTGCTCCTAATGAGATCTTGCTGGTTCTGGATGGCACGACTGGCTTGAATATGCTACAACAAGCGAGGGAGTTCAATGATGTTGTTGGAGTCACAGGATTCGTCCTAACAAAGCTTGATGGAACTGCTCGTGGTGGTTGTGTGGTTAGCGTTGTAGATGAACTTGGAATTCCAGTAAAGTTTATTGGTGTTGGTGAAGGGATGGAGGATCTTCAGCCTTTTGATGCTGAGGCATTTGTTGAAGCCATTTTTCCTTGAGCTAGGACGCTTTGTTTTTTGAGATGGAGAATTTGAAGTTTCGGAGAGAGCATGTTTGCTTACTTGTACATCATTCTGGTTTTTCACTCCTGTGACAATTTCACTATGTGTCCATCCTTTCATGTAATATATATTTGCTAACATGCTAGGAA            ]




>consensus_13878#1
ACTCCCACGTCATCCCCTTCCTCTCCCCGGCGGCGACGTCCGCGCGCTGCTCCCCCTACG
GCGGCGGGGCAGGCGGGGTTCTTCACCCGCCTGGGACGCCTCATCCAGGAGAAGGCCAAG
AGCGACGTCGAGAAGCTCTTCTCCGGCTTCTCCAAGACCCGCGAGAGCCTCTCCGTCGTC
GACGAGCTCCTCACCTACTGGAACCTCGCCGACACCGACCGCGTCCTCGACGAGCTCGAG
GAGGCTCTGCTGGTGTCGGATTTTGGCCCCAAGATTTCGTTCCGGATCGTGGACACTCTA
CGCGAGGAAATCCGCGATGGCAAGCTCAAGTCTGGGGCTGAGATAAAGGAAGCGCTGAAA
AGGTGTATTCTTGAACTGCTGACGAGCAAAGGCGGCAATCCGGAGCTGCAGCTCGGTTTC
AGAAAGCCGGCAGTTATCATGATTGTGGGAGTGAATGGAGGTGGAAAGACTACCTCATTA
GGAAAACTTGCTTACAGATTCAAGAATGAAGGAGTGAAGGTATTGATGGCAGCAGGTGAT
ACCTTCAGAGCAGCAGCTCGTGACCAGCTAGAAGTTTGGGCAGAGAGAACAGGTTCAGAG
ATTGTTATCGATAATGATAAGAAAGCAAAACCTGCATCAGTTCTCTCGCAGGCAGTGAAG
CGCGGGAAGCGTGAAGGATTTGATCTTGTTCTTTGCGACACGTCAGGACGACTTCATACA
AATTATGGTCTGATGGAAGAATTGGTTTCCTGCAAGAAAGTCATAGCTAAAGCCCTTCCG
GGTGCTCCTAATGAGATCTTGCTGGTTCTGGATGGCACGACTGGCTTGAATATGCTACAA
CAAGCGAGGGAGTTCAATGATGTTGTTGGAGTCACAGGATTCGTCCTAACAAAGCTTGAT
GGAACTGCTCGTGGTGGTTGTGTGGTTAGCGTTGTAGATGAACTTGGAATTCCAGTAAAG
TTTATTGGTGTTGGTGAAGGGATGGAGGATCTTCAGCCTTTTGATGCTGAGGCATTTGTT
GAAGCCATTTTTCCTTGAGCTAGGACGCTTTGTTTTTTGAGATGGAGAATTTGAAGTTTC
GGAGAGAGCATGTTTGCTTACTTGTACATCATTCTGGTTTTTCACTCCTGTGACAATTTC
ACTATGTGTCCATCCTTTCATGTAATATATATTTGCTAACATGCTAGGAAATTAGAAGCA
AA

consensusID : consensus_13878#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1034
fasta sequence

                              [CCGCGAGAGCCTCTCCGTCGTCGACGAGCTCCTCACCTACTGGAACCTCGCCGACACCGACCGCGTCCTCGACGAGCTCGAGGAGGCTCTGCTGGTGTCGGATTTTGGCCCCAAGATTTCGTTCCGGATCGTGGACACTCTACGCGAGGAAATCCGCGATGGCAAGCTCAAGTCTGGGGCTGAGATAAAGGAAGCGCTGAAAAGGTGTATTCTTGAACTGCTGACGAGCAAAGGCGGCAATCCGGAGCTGCAGCTCGGTTTCAGAAAGCCGGCAGTTATCATGATTGTGGGAGTGAATGGAGGTGGAAAGACTACCTCATTAGGAAAACTTGCTTACAGATTCAAGAATGAAGGAGTGAAGGTATTGATGGCAGCAGGTGATACCTTCAGAGCAGCAGCTCGTGACCAGCTAGAAGTTTGGGCAGAGAGAACAGGTTCAGAGATTGTTATCGATAATGATAAGAAAGCAAAACCTGCATCAGGCAGTGAAGCGCGGGAAGCGTGAAGGATTTGATCTTGTTCTTTGCGACACGTCAGGACGACTTCATACAAATTATGGTCTGATGGAAGAATTGGTTTCCTGCAAGAAAGTCATAGCTAAAGCCCTTCCGGGTGCTCCTAATGAGATCTTGCTGGTTCTGGATGGCACGACTGGCTTGAATATGCTACAACAAGCGAGGGAGTTCAATGATGTTGTTGGAGTCACAGGATTCGTCCTAACAAAGCTTGATGGAACTGCTCGTGGTGGTTGTGTGGTTAGCGTTGTAGATGAACTTGGAATTCCAGTAAAGTTTATTGGTGTTGGTGAAGGGATGGAGGATCTTCAGCCTTTTGATGCTGAGGCATTTGTTGAAGCCATTTTTCCTTGAGCTGGGACGCTTTGTTTTTTGAGATGGAGAATTTGAAGTTTCGGAGAGAGCATGTTTGCTTACTTGTACATCATTCTGGTTTTTCACTCCTGTGACAATTTCACTATGTGTCCATCCTTTCATGTAATATATATTTGCTAACATGCTAGGAAATTAGAAGCAAAA]

[+] EMBL CF325786             [CCGCGAGAGCCTCTCCGTCGTCGACGAGCTCCTCACCTACTGGAACCTCGCCGACACCGACCGCGTCCTCGACGAGCTCGAGGAGGCTCTGCTGGTGTCGGATTTTGGCCCCAAGATTTCGTTCCGGATCGTGGACACTCTACGCGAGGAAATCCGCGATGGCAAGCTCAAGTCTGGGGCTGAGATAAAGGAAGCGCTGAAAAGGTGTATTCTTGAACTGCTGACGAGCAAAGGCGGCAATCCGGAGCTGCAGCTCGGTTTCAGAAAGCCGGCAGTTATCATGATTGTGGGAGTGAATGGAGGTGGAAAGACTACCTCATTAGGAAAACTTGCTTACAGATTCAAGAATGAAGGAGTGAAGGTATTGATGGCAGCAGGTGATACCTTCAGAGCAGCAGCTCGTGACCAGCTAGAAGTTTGGGCAGAGAGAACAGGTTCAGAGATTGTTATCGATAATGATAAGAAAGCAAAACCTGCATCAGGCAGTGAAGCGCGGGAAGCGTGAAGGATTTGATCTTGTTCTTTGCGACACGTCAGGACGACTTCATACAAATTATGGTCTGATGGAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CA764886             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GAAAGCAAAACCTGCATCAGGCAGTGAAGCGCGGGAAGCGTGGAGGATTTGATCTTGTTCCTTGCGACACGTCAGGACGACTTCATACAAATTATGGTCTGATGGAAGAATTGGTTTCCTGCAAGAAAGTCATAGCTAAAGCCCTTCCGGGTGCTCCTAATGAGATCTTGCTGGTTCTGGATGGCACGACTGGCTTGAATATGCTACAACAAGCGAGGGAGTTCAATGATGTTGTTGGAGTCACAGGATTCGTCCTAACAAAGCTTGATGGAACTGCTCGTGGTGGTTGTGTGGTTAGCGTTGTAGATGAACTTGGAATTCCAGTAAAGTTTATTGGTGTTGGTGAAGGGATGGAGGATCTTCAGCCTTTTGATGCTGAGGCATTTGTTGAAGCCATTTTTCCTTGAGCTGGGACGCTTTGTTTTTTGAGATGGAGAATTTGAAGTTTCGGAGAGAGCATGTTTGCTTACTTGTACATCATTCTGGTTTTTCACTCCTGTGACAATTTCACTATGTGTCCATCCTTTCATGTAATATATATTTGCTAACATGCTAGGAAATTAGAAGCAAAA]




>consensus_13878#2
CCGCGAGAGCCTCTCCGTCGTCGACGAGCTCCTCACCTACTGGAACCTCGCCGACACCGA
CCGCGTCCTCGACGAGCTCGAGGAGGCTCTGCTGGTGTCGGATTTTGGCCCCAAGATTTC
GTTCCGGATCGTGGACACTCTACGCGAGGAAATCCGCGATGGCAAGCTCAAGTCTGGGGC
TGAGATAAAGGAAGCGCTGAAAAGGTGTATTCTTGAACTGCTGACGAGCAAAGGCGGCAA
TCCGGAGCTGCAGCTCGGTTTCAGAAAGCCGGCAGTTATCATGATTGTGGGAGTGAATGG
AGGTGGAAAGACTACCTCATTAGGAAAACTTGCTTACAGATTCAAGAATGAAGGAGTGAA
GGTATTGATGGCAGCAGGTGATACCTTCAGAGCAGCAGCTCGTGACCAGCTAGAAGTTTG
GGCAGAGAGAACAGGTTCAGAGATTGTTATCGATAATGATAAGAAAGCAAAACCTGCATC
AGGCAGTGAAGCGCGGGAAGCGTGAAGGATTTGATCTTGTTCTTTGCGACACGTCAGGAC
GACTTCATACAAATTATGGTCTGATGGAAGAATTGGTTTCCTGCAAGAAAGTCATAGCTA
AAGCCCTTCCGGGTGCTCCTAATGAGATCTTGCTGGTTCTGGATGGCACGACTGGCTTGA
ATATGCTACAACAAGCGAGGGAGTTCAATGATGTTGTTGGAGTCACAGGATTCGTCCTAA
CAAAGCTTGATGGAACTGCTCGTGGTGGTTGTGTGGTTAGCGTTGTAGATGAACTTGGAA
TTCCAGTAAAGTTTATTGGTGTTGGTGAAGGGATGGAGGATCTTCAGCCTTTTGATGCTG
AGGCATTTGTTGAAGCCATTTTTCCTTGAGCTGGGACGCTTTGTTTTTTGAGATGGAGAA
TTTGAAGTTTCGGAGAGAGCATGTTTGCTTACTTGTACATCATTCTGGTTTTTCACTCCT
GTGACAATTTCACTATGTGTCCATCCTTTCATGTAATATATATTTGCTAACATGCTAGGA
AATTAGAAGCAAAA

consensusID : consensus_13878#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 550
fasta sequence

                              [GAGACAAGGGGGGACCACTTATTTTTCAGGACTTCATACAAATTATGGTTTGATGGACGAATTGGTTTCCTGCAAGAGAGTCATAGCTAAAGCCCTTCCGGGTGCTCCTAATGAGATCTTGCTGGTTCTGGATGGCACGACTGGCTTGAATATGCTACAACAAGCGAGGGAGTTCAATGATGTTGTTGGAGTCACAGGATTCGTCCCAACAAAGCTTGATGGAACTGCTCGTGGTGGTTGTGTGGTAAGCGTTGTAGATGAACTTGGAATTCCAGTAAAGTTTGTTGGTGTTGGTGAAGGGATGGAGGATCTTCAGCCTTTTGATGCTGGGGCATTTGTTGAAGCCATTTTTCCTTGAGCTAGGACGCTTTGTTTTTTTGAGATGGAGAATTTGAAGTTTCGGAGAGAGCATGTTTGCTTACTTGTACATCATTCTGGTTTTTCACTCCTGTGACAATTTCACTATGTGTCCATCCTTTCATGTAATATATATTTGCTAACATGCTAGGAAATTAGAAGCAAAATTTTGGACCAAAAAAAAAAAAAAAAA]

[-] EMBL CA763094             [GAGACAAGGGGGGACCACTTATTTTTCAGGACTTCATACAAATTATGGTTTGATGGACGAATTGGTTTCCTGCAAGAGAGTCATAGCTAAAGCCCTTCCGGGTGCTCCTAATGAGATCTTGCTGGTTCTGGATGGCACGACTGGCTTGAATATGCTACAACAAGCGAGGGAGTTCAATGATGTTGTTGGAGTCACAGGATTCGTCCCAACAAAGCTTGATGGAACTGCTCGTGGTGGTTGTGTGGTAAGCGTTGTAGATGAACTTGGAATTCCAGTAAAGTTTGTTGGTGTTGGTGAAGGGATGGAGGATCTTCAGCCTTTTGATGCTGGGGCATTTGTTGAAGCCATTTTTCCTTGAGCTAGGACGCTTTGTTTTTTTGAGATGGAGAATTTGAAGTTTCGGAGAGAGCATGTTTGCTTACTTGTACATCATTCTGGTTTTTCACTCCTGTGACAATTTCACTATGTGTCCATCCTTTCATGTAATATATATTTGCTAACATGCTAGGAAATTAGAAGCAAAATTTTGGACCAAAAAAAAAAAAAAAAA]




>consensus_13878#3
GAGACAAGGGGGGACCACTTATTTTTCAGGACTTCATACAAATTATGGTTTGATGGACGA
ATTGGTTTCCTGCAAGAGAGTCATAGCTAAAGCCCTTCCGGGTGCTCCTAATGAGATCTT
GCTGGTTCTGGATGGCACGACTGGCTTGAATATGCTACAACAAGCGAGGGAGTTCAATGA
TGTTGTTGGAGTCACAGGATTCGTCCCAACAAAGCTTGATGGAACTGCTCGTGGTGGTTG
TGTGGTAAGCGTTGTAGATGAACTTGGAATTCCAGTAAAGTTTGTTGGTGTTGGTGAAGG
GATGGAGGATCTTCAGCCTTTTGATGCTGGGGCATTTGTTGAAGCCATTTTTCCTTGAGC
TAGGACGCTTTGTTTTTTTGAGATGGAGAATTTGAAGTTTCGGAGAGAGCATGTTTGCTT
ACTTGTACATCATTCTGGTTTTTCACTCCTGTGACAATTTCACTATGTGTCCATCCTTTC
ATGTAATATATATTTGCTAACATGCTAGGAAATTAGAAGCAAAATTTTGGACCAAAAAAA
AAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13878#1      ------------------------------------------------------------
consensus_13878#2      ------------------------------------------------------------
consensus_13878#0      TTCCTCGAGCACTGTTGGCCTACTGGAGCGAAGCGCTATCCACCCAGAGCGGAGCCTTGG 60
consensus_13878#3      ------------------------------------------------------------
                                                                                   

consensus_13878#1      ---------------------------------------------------------ACT 3
consensus_13878#2      ------------------------------------------------------------
consensus_13878#0      CATCCCTACAATGGCGGCACACTCCCACGTCATCCCCTTCCTCTCCCCGGCGGCGACGTC 120
consensus_13878#3      ------------------------------------------------------------
                                                                                   

consensus_13878#1      CCCACGTCATCCCCTTCCTCTCCCCGGCGGCGACGTCCGCGCGCTGCTCC-------CCC 56
consensus_13878#2      ------------------------------------------------------------
consensus_13878#0      CGCGCGCTGCTCCCCCTACGGCCACCGCCGCCGCGGCCGCGCGGGGCTCCTGCGGTGCGC 180
consensus_13878#3      ------------------------------------------------------------
                                                                                   

consensus_13878#1      TACGGCGGCGGGGCAGGCGGGGTTCTTCACCCGCCTGGGACGCCTCATCCAGGAGAAGGC 116
consensus_13878#2      ------------------------------------------------------------
consensus_13878#0      GGCGGCGGCGGGGCAGGCGGGGTTCTTCACCCGCCTGGGACGCCTCATCCAGGAGAAGGC 240
consensus_13878#3      ------------------------------------------------------------
                                                                                   

consensus_13878#1      CAAGAGCGACGTCGAGAAGCTCTTCTCCGGCTTCTCCAAGACCCGCGAGAGCCTCTCCGT 176
consensus_13878#2      ------------------------------------------CCGCGAGAGCCTCTCCGT 18
consensus_13878#0      CAAGAGCGACGTCGAGAAGCTCTTCTCCGGCTTCTCCAAGACCCGCGAGAGCCTCTCCGT 300
consensus_13878#3      ------------------------------------------------------------
                                                                                   

consensus_13878#1      CGTCGACGAGCTCCTCACCTACTGGAACCTCGCCGACACCGACCGCGTCCTCGACGAGCT 236
consensus_13878#2      CGTCGACGAGCTCCTCACCTACTGGAACCTCGCCGACACCGACCGCGTCCTCGACGAGCT 78
consensus_13878#0      CGTCGACGAGCTCCTCACCTACTGGAACCTCGCCGACACCGACCGCGTCCTCGACGAGCT 360
consensus_13878#3      ------------------------------------------------------------
                                                                                   

consensus_13878#1      CGAGGAGGCTCTGCTGGTGTCGGATTTTGGCCCCAAGATTTCGTTCCGGATCGTGGACAC 296
consensus_13878#2      CGAGGAGGCTCTGCTGGTGTCGGATTTTGGCCCCAAGATTTCGTTCCGGATCGTGGACAC 138
consensus_13878#0      CGAGGAGGCTCTGCTGGTGTCGGATTTTGGCCCCAAGATTTCGTTCCGGATCGTGGACAC 420
consensus_13878#3      ------------------------------------------------------------
                                                                                   

consensus_13878#1      TCTACGCGAGGAAATCCGCGATGGCAAGCTCAAGTCTGGGGCTGAGATAAAGGAAGCGCT 356
consensus_13878#2      TCTACGCGAGGAAATCCGCGATGGCAAGCTCAAGTCTGGGGCTGAGATAAAGGAAGCGCT 198
consensus_13878#0      TCTACGCGAGGAAATCCGCGATGGCAAGCTCAAGTCTGGGGCTGAGATAAAGGAAGCGCT 480
consensus_13878#3      ------------------------------------------------------------
                                                                                   

consensus_13878#1      GAAAAGGTGTATTCTTGAACTGCTGACGAGCAAAGGCGGCAATCCGGAGCTGCAGCTCGG 416
consensus_13878#2      GAAAAGGTGTATTCTTGAACTGCTGACGAGCAAAGGCGGCAATCCGGAGCTGCAGCTCGG 258
consensus_13878#0      GAAAAGGTGTATTCTTGAACTGCTGACGAGCAAAGGCGGCAATCCGGAGCTGCAGCTCGG 540
consensus_13878#3      ------------------------------------------------------------
                                                                                   

consensus_13878#1      TTTCAGAAAGCCGGCAGTTATCATGATTGTGGGAGTGAATGGAGGTGGAAAGACTACCTC 476
consensus_13878#2      TTTCAGAAAGCCGGCAGTTATCATGATTGTGGGAGTGAATGGAGGTGGAAAGACTACCTC 318
consensus_13878#0      TTTCAGAAAGCCGGCAGTTATCATGATTGTGGGAGTGAATGGAGGTGGAAAGACTACCTC 600
consensus_13878#3      ------------------------------------------------------------
                                                                                   

consensus_13878#1      ATTAGGAAAACTTGCTTACAGATTCAAGAATGAAGGAGTGAAGGTATTGATGGCAGCAGG 536
consensus_13878#2      ATTAGGAAAACTTGCTTACAGATTCAAGAATGAAGGAGTGAAGGTATTGATGGCAGCAGG 378
consensus_13878#0      ATTAGGAAAACTTGCTTACAGATTCAAGAATGAAGGAGTGAAGGTATTGATGGCAGCAGG 660
consensus_13878#3      ------------------------------------------------------------
                                                                                   

consensus_13878#1      TGATACCTTCAGAGCAGCAGCTCGTGACCAGCTAGAAGTTTGGGCAGAGAGAACAGGTTC 596
consensus_13878#2      TGATACCTTCAGAGCAGCAGCTCGTGACCAGCTAGAAGTTTGGGCAGAGAGAACAGGTTC 438
consensus_13878#0      TGATACCTTCAGAGCAGCAGCTCGTGACCAGCTAGAAGTTTGGGCAGAGAGAACAGGTTC 720
consensus_13878#3      ------------------------------------------------------------
                                                                                   

consensus_13878#1      AGAGATTGTTATCGATAATGATAAGAAAGCAAAACCTGCATCAGTTCTCTCGCAGGCAGT 656
consensus_13878#2      AGAGATTGTTATCGATAATGATAAGAAAGCAAAACCTGCATCAG-----------GCAGT 487
consensus_13878#0      AGAGATTGTTATCGATAATGATAAGAAAGCAAAACCTGCATCAGTTCTCTCGCAGGCAGT 780
consensus_13878#3      ------------------------------------------------------------
                                                                                   

consensus_13878#1      GAAGCGCGGGAAGCGTGAAGGATTTGATCTTGTTCTTTGCGACACGTCAGGACGACTTCA 716
consensus_13878#2      GAAGCGCGGGAAGCGTGAAGGATTTGATCTTGTTCTTTGCGACACGTCAGGACGACTTCA 547
consensus_13878#0      GAAGCGCGGGAAGCGTGAAGGATTTGATCTTGTTCTTTGCGACACGTCAGGACGACTTCA 840
consensus_13878#3      ---------GAGACAAGGGGGGACCA--CTTATTTTTC-------------AGGACTTCA 36
                                **  *  *  **       *** ** **              * *******

consensus_13878#1      TACAAATTATGGTCTGATGGAAGAATTGGTTTCCTGCAAGAAAGTCATAGCTAAAGCCCT 776
consensus_13878#2      TACAAATTATGGTCTGATGGAAGAATTGGTTTCCTGCAAGAAAGTCATAGCTAAAGCCCT 607
consensus_13878#0      TACAAATTATGGTCTGATGGAAGAATTGGTTTCCTGCAAGAAAGTCATAGCTAAAGCCCT 900
consensus_13878#3      TACAAATTATGGTTTGATGGACGAATTGGTTTCCTGCAAGAGAGTCATAGCTAAAGCCCT 96
                       ************* ******* ******************* ******************

consensus_13878#1      TCCGGGTGCTCCTAATGAGATCTTGCTGGTTCTGGATGGCACGACTGGCTTGAATATGCT 836
consensus_13878#2      TCCGGGTGCTCCTAATGAGATCTTGCTGGTTCTGGATGGCACGACTGGCTTGAATATGCT 667
consensus_13878#0      TCCGGGTGCTCCTAATGAGATCTTGCTGGTTCTGGATGGCACGACTGGCTTGAATATGCT 960
consensus_13878#3      TCCGGGTGCTCCTAATGAGATCTTGCTGGTTCTGGATGGCACGACTGGCTTGAATATGCT 156
                       ************************************************************

consensus_13878#1      ACAACAAGCGAGGGAGTTCAATGATGTTGTTGGAGTCACAGGATTCGTCCTAACAAAGCT 896
consensus_13878#2      ACAACAAGCGAGGGAGTTCAATGATGTTGTTGGAGTCACAGGATTCGTCCTAACAAAGCT 727
consensus_13878#0      ACAACAAGCGAGGGAGTTCAATGATGTTGTTGGAGTCACAGGATTCGTCCTAACAAAGCT 1020
consensus_13878#3      ACAACAAGCGAGGGAGTTCAATGATGTTGTTGGAGTCACAGGATTCGTCCCAACAAAGCT 216
                       ************************************************** *********

consensus_13878#1      TGATGGAACTGCTCGTGGTGGTTGTGTGGTTAGCGTTGTAGATGAACTTGGAATTCCAGT 956
consensus_13878#2      TGATGGAACTGCTCGTGGTGGTTGTGTGGTTAGCGTTGTAGATGAACTTGGAATTCCAGT 787
consensus_13878#0      TGATGGAACTGCTCGTGGTGGTTGTGTGGTTAGCGTTGTAGATGAACTTGGAATTCCAGT 1080
consensus_13878#3      TGATGGAACTGCTCGTGGTGGTTGTGTGGTAAGCGTTGTAGATGAACTTGGAATTCCAGT 276
                       ****************************** *****************************

consensus_13878#1      AAAGTTTATTGGTGTTGGTGAAGGGATGGAGGATCTTCAGCCTTTTGATGCTGAGGCATT 1016
consensus_13878#2      AAAGTTTATTGGTGTTGGTGAAGGGATGGAGGATCTTCAGCCTTTTGATGCTGAGGCATT 847
consensus_13878#0      AAAGTTTATTGGTGTTGGTGAAGGGATGGAGGATCTTCAGCCTTTTGATGCTGAGGCATT 1140
consensus_13878#3      AAAGTTTGTTGGTGTTGGTGAAGGGATGGAGGATCTTCAGCCTTTTGATGCTGGGGCATT 336
                       ******* ********************************************* ******

consensus_13878#1      TGTTGAAGCCATTTTTCCTTGAGCTAGGACGCTTTGTTTTTT-GAGATGGAGAATTTGAA 1075
consensus_13878#2      TGTTGAAGCCATTTTTCCTTGAGCTGGGACGCTTTGTTTTTT-GAGATGGAGAATTTGAA 906
consensus_13878#0      TGTTGAAGCCATTTTTCCTTGAGCTAGGACGCTTTGTTTTTT-GAGATGGAGAATTTGAA 1199
consensus_13878#3      TGTTGAAGCCATTTTTCCTTGAGCTAGGACGCTTTGTTTTTTTGAGATGGAGAATTTGAA 396
                       ************************* **************** *****************

consensus_13878#1      GTTTCGGAGAGAGCATGTTTGCTTACTTGTACATCATTCTGGTTTTTCACTCCTGTGACA 1135
consensus_13878#2      GTTTCGGAGAGAGCATGTTTGCTTACTTGTACATCATTCTGGTTTTTCACTCCTGTGACA 966
consensus_13878#0      GTTTCGGAGAGAGCATGTTTGCTTACTTGTACATCATTCTGGTTTTTCACTCCTGTGACA 1259
consensus_13878#3      GTTTCGGAGAGAGCATGTTTGCTTACTTGTACATCATTCTGGTTTTTCACTCCTGTGACA 456
                       ************************************************************

consensus_13878#1      ATTTCACTATGTGTCCATCCTTTCATGTAATATATATTTGCTAACATGCTAGGAAATTAG 1195
consensus_13878#2      ATTTCACTATGTGTCCATCCTTTCATGTAATATATATTTGCTAACATGCTAGGAAATTAG 1026
consensus_13878#0      ATTTCACTATGTGTCCATCCTTTCATGTAATATATATTTGCTAACATGCTAGGAAATTAG 1319
consensus_13878#3      ATTTCACTATGTGTCCATCCTTTCATGTAATATATATTTGCTAACATGCTAGGAAATTAG 516
                       ************************************************************

consensus_13878#1      AAGCAAA----------------------------------- 1202
consensus_13878#2      AAGCAAAA---------------------------------- 1034
consensus_13878#0      AAGCAAAATTTTGGACCAACAAAAAAAAAAAAGGCCACATGT 1361
consensus_13878#3      AAGCAAAATTTTGGACCAAAAAAAAAAAAAAAAA-------- 550
                       *******