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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13913#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1658 fasta sequence
[TAGAGAGAGAAGTCAAAGACTCTCTCCTTCTCGTCACCTTCTTCCTCCCCACGCCGCGCTCTCCTCCCCTCTTAAACCACTAGCGCCGCCTCCGCGCTCTCTCCTGCCTCCTCTCCTCGCCTCTCCTCACCCTGTGGGTTGGTCGGCGTGTAGCTGCTTGCTTTGCTCTCACTGCCGGGGCTCGATCTGCTTGCTCTGCAGAAATTCTTTCCAATTCATTGCTTCTTGTGGCCTGTGGGCACCTCTACAATTTGATTTCAGATGGATTGCTGCTTTATGTTCAGAAAAAAACAACCTGTTG-AAGGTGATGATGGTGAACATAGAGTGAAGATATTTT-CTTACAGTGAGTTGAGAAAGGCTACCCATGATTTTAGTGGGGCAAATAAGATTGGAGAGGGTGGTTTTGGCTCTGTGTTCAGGGGAGTGCTTAGAGATGGGACAACCGTTGCCGTAAAGGTGCTGTCTGCTACTTCAAGACAAGGCGTCCGAGAGTTCTTGACTGAACTTACAGCAATTTCTGACATCAAGCATGAAAACCTCGTCACACTTATTGGTTGCTGTGCTGAAGGATCTCATAGGATCCTTGTTTACAATTATCTTGAGAACAACAGTCTTGCACAGACATTGCTAGGATCTAGGGGTAGCAACATCCGGTTCGATTGGAGGACCCGTGTAAAAATTGCTGTGGGTGTTGCTCGTGGAATTGCATTTTTACATGAGGAAATTCGCCCTCCGATTATCCACCGTGACATAAAGGCGAGCAACATTCTTCTTGACAAGGACCTCACCCCAAAAATTTCTGATTTCGGATTGGCAAGGCTCCTTCCACCCAACGCAACTCATGTGAGCACCCGAGTTGCAGGCACATTAGGATACCTGGCACCTGAATACGCTAT-CCGA-GGCCA--GGTGACAAAGAAATCCGACATCTATAGCTTCGGTGTTCTTCTACTGGAAATCGTTAGCGGCAGATGCAACACCAACACAAGATTGCCTTATGAAGATCAATTTCTTCTCGAAAGGACATGGGTACGCTACGAGCAAGAACGCCTGGCTGAGATCATCGATGCTGACCTGGGGAATGACCTGGACGTCGACGAGGCATGCCGGTTCCTGAAGATTGGCCTGCTATGCACACAGGACGCAATGGCGCGCCGCCCCAACATGAGCACCGTCGTCAGGATGCTCACCGGGGAGAAGCACTTCTCGGTGCACCGGATCACCA-GGCCGGCCATGATCACCGACTTCGCCGACCTCAAGGTCAGCAGCAGCCAGCAGAAGGAGAACGAGACAACACGGTCATCCAACATGAGATCGTTCAGCACCACTGATGAAACGGAGCCTTTCTCATCGTCAGAGACGCCGACGCAGACGTCTATCTG-AAAAAAAAAAACAAGAAGAAGAACTGGAAATGTGGAGACAGGACTAGTGTTTTTTTTGTGTTTGTATATTATTGCTCCGAAAGGGGATAGGATTACGTTCAATTTTTTTTTCTCTTTTTGGAGAGAGTTTCGTGTTTGTTTGATTTTTGTGACGAGGAGATGTTTAAGATAGGCAGCGTATTGCTTCTCGATCTGGGTGTAAATATCTCGAAATGAAGATGTTCAAAGCCTCAAAGATAAGCTCTGCACGATTCACA--AAAAAAAAAAAAAAAAAACTCG]
[+] EMBL AU056631 [TAGAGAGAGAAGTCAAAGACTCTCTCCTTCTCGTCACCTTCTTCCTCCCCACGCCGCGCTCTCCTCCCCTCTTAAACCACTAGCGCCGCCTCCGCGCTCTCTCCTGCCTCCTCTCCTCGCCTCTCCTCACCCTGTGGGTTGGTCGGCGTGTAGCTGCTTGCTTTGCTCTCACTGCCGGGGCTCGATCTGCTTGNTCTGCAGAAATTCTTTCCAATTCATTGCTTCTTGTGGCCTGTGGGCACCTCTACAATTTGATTTCAGATGGATTGCTGCNTTATGTTCAGAAAAAAACAACCTGTTGAAAGGTGATGATGGTGAACATANAGTGAAGATATTTTGCTTACAGTGAat ]
[+] EMBL CB648387 [ GAGAAGCCAAAGACTCTCTCCTTCTCGTCACCTTCTTCCTCCCCACGCCGCGCTCTCCTCCCCTCTTAAACCACTAGCGCCGCCTCCGCGCTCTCTCCTGCCTCCTCTCCTCGCCTCTCCTCACCCTGTGGGTTGGTCGGCGTGTAGCTGCTTGCTTTGCTCTCACTGCCGGGGCTCGATCTGCTTGCTCTGCAGAAATTCTTTCCAATTCATTGCTTCTTGTGGCCTGTGGGCACCTCTACAATTTGATTTCAGATGGATTGCTGCTTTATGTTCAGAAAAAAACAACCTGTTG AAGGTGATGATGGTGAACATAGAGTGAAGATATTTT CTTACAGTGAGTTGAGAAAGGCTACCCATGATTTTAGTGGGGCAAATAAGATTGGAGAGGGTGGTTTTGGCTCTGTGTTCAGGGGAGTGCTTAGAGATGGGACAACCGTTGCCGTAAAGGTGCTGTCTGCTACTTCAAGACAAGGCGTCCGAGAGTTCTTGACTGAACTTACAGCAATTTCTGACATCAAGCATGAAAACCTCGTCACACTTATTGGTTGCTGTGCTGAAGGATCTCATAGGATCCTTGTTTACAATTATCTTGAGAACAACAGTCTTGCACAGACATTGCTAGGATCTAGGGGTAGCAACATCCGGTTCGATTGGAGGACCCGTGTAAAAATTGCTGTGGGTGTTGCTCGTGGAATTGCATTTTTACATGAGGAAATTCGCCCTCCGATTATCCACCGTGACATAAAGGCGAGCAACA ]
[+] EMBL AK066337 [ CTTCCTCCCCACGCCGCGCTCTCCTCCCCTCTTAAACCACTAGCGCCGCCTCCGCGCTCTCTCCTGCCTCCTCTCCTCGCCTCTCCTCACCCTGTGGGTTGGTCGGCGTGTAGCTGCTTGCTTTGCTCTCACTGCCGGGGCTCGATCTGCTTGCTCTGCAGAAATTCTTTCCAATTCATTGCTTCTTGTGGCCTGTGGGCACCTCTACAATTTGATTTCAGATGGATTGCTGCTTTATGTTCAGAAAAAAACAACCTGTTG AAGGTGATGATGGTGAACATAGAGTGAAGATATTTT CTTACAGTGAGTTGAGAAAGGCTACCCATGATTTTAGTGGGGCAAATAAGATTGGAGAGGGTGGTTTTGGCTCTGTGTTCAGGGGAGTGCTTAGAGATGGGACAACCGTTGCCGTAAAGGTGCTGTCTGCTACTTCAAGACAAGGCGTCCGAGAGTTCTTGACTGAACTTACAGCAATTTCTGACATCAAGCATGAAAACCTCGTCACACTTATTGGTTGCTGTGCTGAAGGATCTCATAGGATCCTTGTTTACAATTATCTTGAGAACAACAGTCTTGCACAGACATTGCTAGGATCTAGGGGTAGCAACATCCGGTTCGATTGGAGGACCCGTGTAAAAATTGCTGTGGGTGTTGCTCGTGGAATTGCATTTTTACATGAGGAAATTCGCCCTCCGATTATCCACCGTGACATAAAGGCGAGCAACATTCTTCTTGACAAGGACCTCACCCCAAAAATTTCTGATTTCGGATTGGCAAGGCTCCTTCCACCCAACGCAACTCATGTGAGCACCCGAGTTGCAGGCACATTAGGATACCTGGCACCTGAATACGCTAT CCGA GGCCA GGTGACAAAGAAATCCGACATCTATAGCTTCGGTGTTCTTCTACTGGAAATCGTTAGCGGCAGATGCAACACCAACACAAGATTGCCTTATGAAGATCAATTTCTTCTCGAAAGGACATGGGTACGCTACGAGCAAGAACGCCTGGCTGAGATCATCGATGCTGACCTGGGGAATGACCTGGACGTCGACGAGGCATGCCGGTTCCTGAAGATTGGCCTGCTATGCACACAGGACGCAATGGCGCGCCGCCCCAACATGAGCACCGTCGTCAGGATGCTCACCGGGGAGAAGCACTTCTCGGTGCACCGGATCACCA GGCCGGCCATGATCACCGACTTCGCCGACCTCAAGGTCAGCAGCAGCCAGCAGAAGGAGAACGAGACAACACGGTCATCCAACATGAGATCGTTCAGCACCACTGATGAAACGGAGCCTTTCTCATCGTCAGAGACGCCGACGCAGACGTCTATCTG AAAAAAAAAAACAAGAAGAAGAACTGGAAATGTGGAGACAGGACTAGTGTTTTTTTTGTGTTTGTATATTATTGCTCCGAAAGGGGATAGGATTACGTTCAATTTTTTTTTCTCTTTTTGGAGAGAGTTTCGTGTTTGTTTGATTTTTGTGACGAGGAGATGTTTAAGATAGGCAGCGTATTGCTTCTCGATCTGGGTGTAAATATCTCGAAATGAAGATGTTCAAAGCCTCAAAGATAAGCTCTGCAC ]
[+] EMBL AK099667 [ CTTCCTCCCCACGCCGCGCTCTCCTCCCCTCTTAAACCACTAGCGCCGCCTCCGCGCTCTCTCCTGCCTCCTCTCCTCGCCTCTCCTCACCCTGTGGGTTGGTCGGCGTGTAGCTGCTTGCTTTGCTCTCACTGCCGGGGCTCGATCTGCTTGCTCTGCAGAAATTCTTTCCAATTCATTGCTTCTTGTGGCCTGTGGGCACCTCTACAATTTGATTTCAGATGGATTGCTGCTTTATGTTCAGAAAAAAACAACCTGTTG AAGGTGATGATGGTGAACATAGAGTGAAGATATTTT CTTACAGTGAGTTGAGAAAGGCTACCCATGATTTTAGTGGGGCAAATAAGATTGGAGAGGGTGGTTTTGGCTCTGTGTTCAGGGGAGTGCTTAGAGATGGGACAACCGTTGCCGTAAAGGTGCTGTCTGCTACTTCAAGACAAGGCGTCCGAGAGTTCTTGACTGAACTTACAGCAATTTCTGACATCAAGCATGAAAACCTCGTCACACTTATTGGTTGCTGTGCTGAAGGATCTCATAGGATCCTTGTTTACAATTATCTTGAGAACAACAGTCTTGCACAGACATTGCTAGGATCTAGGGGTAGCAACATCCGGTTCGATTGGAGGACCCGTGTAAAAATTGCTGTGGGTGTTGCTCGTGGAATTGCATTTTTACATGAGGAAATTCGCCCTCCGATTATCCACCGTGACATAAAGGCGAGCAACATTCTTCTTGACAAGGACCTCACCCCAAAAATTTCTGATTTCGGATTGGCAAGGCTCCTTCCACCCAACGCAACTCATGTGAGCACCCGAGTTGCAGGCACATTAGGATACCTGGCACCTGAATACGCTAT CCGA GGCCA GGTGACAAAGAAATCCGACATCTATAGCTTCGGTGTTCTTCTACTGGAAATCGTTAGCGGCAGATGCAACACCAACACAAGATTGCCTTATGAAGATCAATTTCTTCTCGAAAGGACATGGGTACGCTACGAGCAAGAACGCCTGGCTGAGATCATCGATGCTGACCTGGGGAATGACCTGGACGTCGACGAGGCATGCCGGTTCCTGAAGATTGGCCTGCTATGCACACAGGACGCAATGGCGCGCCGCCCCAACATGAGCACCGTCGTCAGGATGCTCACCGGGGAGAAGCACTTCTCGGTGCACCGGATCACCA GGCCGGCCATGATCACCGACTTCGCCGACCTCAAGGTCAGCAGCAGCCAGCAGAAGGAGAACGAGACAACACGGTCATCCAACATGAGATCGTTCAGCACCACTGATGAAACGGAGCCTTTCTCATCGTCAGAGACGCCGACGCAGACGTCTATCTG AAAAAAAAAAACAAGAAGAAGAACTGGAAATGTGGAGACAGGACTAGTGTTTTTTTTGTGTTTGTATATTATTGCTCCGAAAGGGGATAGGATTACGTTCAATTTTTTTTTCTCTTTTTGGAGAGAGTTTCGTGTTTGTTTGATTTTTGTGACGAGGAGATGTTTAAGATAGGCAGCGTATTGCTTCTCGATCTGGGTGTAAATATCTCGAAATGAAGATGTTCAAAGCCTCAAAGATAAGCTCTGCAC ]
[+] EMBL BM038830 [ TACGCTATGCCGAGGGCCACGGGTGACAAAGAAATCCGACATCTATAGCTTCGGTGTTCTTCTACTGGAAATCGTTAGCGGCAGATGCAACACC ACACAAGATTGCCTTATGAAGATCAATTTCTTCTCGAAAGGACATGGGTACGCTACGAGCAAGAACGCCTGGCTGAGATCATCGATGCTGACCTGGGGAATGACCTGGATGTCGACGAGGCATGCCGGTTCCTGAAGATTGGCCTGCTATGCANACAGGACGCAATGGCGCGCCGCCCCAACATGAGCACCGTCGTCAGGATGCTCACCGGGGAGAAGCACTTCTCGGTGCACCGGATCACCACGCCCGCCCATGATCACCGACTTCGCCGACCTCAAGGTCAGCAGCAGCCAGCAGAAGGAGAACGAGACAACACGGTCATCCAACATGAGATCGTTCAGCACCACTGATGAGACGGA CCTTTCTCATCGTCAGAGACGCCGACGCAGACNTCTATCTG AAAAAAAAAA ]
[-] EMBL CF326133 [ GAGCACCGTCGTCAGGATGCTCACCGGGGAGAAGCACTTCTCGGTGCACCGGATCACCA GGCCGGCCATGATCACCGACTTCGCCGACCTCAAGGTCAGCAGCAGCCAGCAGAAGGAGAACGAGACAACACGGTCATCCAACATGAGATCGTTCAGCACCACTGATGAAACGGAGCCTTTCTCATCGTCAGAGACGCCGACGCAGACGTCTATCTGAAAAAAAAAAAACAAGAAGAAGAACTGGAAATGTGGAGACAGGACTAGTGTTTTTTTTGTGTTTGTATATTATTGCTCCGAAAGGGGATAGGATTACGTTCAATTTTTTTTTCTCTTTTTGGAGAGAGTTTCGTGTTTGTTTGATTTTTGTGACGAGGAGATGTTTAAGATAGGCAGCGTATTGCTTCTCGATCTGGGTGTAAATATCTCGAAATGAAGATGTTCAAAGCCTCAAAGATAAGCTCTGCACGATTCACATCAAAAAAAAAAAAAAAAAACTCG]
[+] EMBL AU056632 [ GAAGGAGAACGAGACAACACGGTCATCCAACATGAGATCGTTCAGCACCACTGATGAAACGGAGCCTTTCTCATCGTCAGAGACGCCGACGCAGACGTCTATCTG AAAAAAAAAAACAAGAAGAAGAACTGGAAATGTGGAGACAGGACTAGTGTTTTTTTTGTGTTTGTATATTATTGCTCCGAAAGGGGATAGGATTACGTTCAATTTTTTTTTCTCTTTTTGGAGAGAGTTTCGTGTTTGTTTGATTTTTGTGACGAGGAGATGTTTAAGATAGGCAGCGTATTGCTTCTCGATCTGGGTGTAAATATCTCGAAATGAAGATGTTCAAAGCCTCAAAGATAAGCTCTGCACGATTCACA AAAAAAAAAAAA ]
consensusID : consensus_13913#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1538 fasta sequence
[CGCGGAGCTCACCAACGTCGCCACGCCCTCTCGCCGACCTCCTCCTCCTCCTCCTCCTCTTGCCTCCTCCGCTGAGGCAGCCAGTGCGTGCGCCGCGCGGGCAGCGTCGGCATTAGAGGGGTGGTGGCGGGCGGCGCGCCGACGGAGACGCCAGATATTCAGCAGAAGGCACTTCCTCTGTTTGATTTGCAAAAATGGCTTGCTGCTTTATGTTTGGGAATGATACAAAACAAACTAGTGAAGGTGAACAAGGAGAAAAAGCGGTCAGGATTTTTTCTTACAATGAGCTGAGAAGAGCTACACATGATTTTAGTGGGGCGAACAAGATTGGTGAGGGCGGCTTCGGTTCTGTGTTCAGGGGAAGGCTCAGAGATGGGACAATAGTTGCAGTAAAGGTGCTCTCTGCTACTTCAAGGCAAGGCGTCCGTGAGTTCATTAATGAACTGACAGCAATTTCCGATGTGATGCATGAAAACCTAATTACGTTAGTCGGCTGCTGTGCTGAAGGGTCTCATAGGATCCTTGTATACAATTATCTTGAGAACAACAGCCTTCAACATACACTACTAGGGTCAGGCCGTAGCAACATCCAATTCAATTGGAGAGCTCGTGTCAAAATCACTGTAGGTGTTGCCCGTGGGCTTGCATTTCTTCACGAAGAAGTTCGTCCTCACATAATACACCGGGACATAAAGGCAAGCAATATTCTTCTCGACAAGGATATGACCCCCAAAATATCTGA-TTTTGGGTTGGCCAGGCTCCTCCCACCAAATGCGACTCATGTGAGCACCCGAGTTGCAGG-AACAATAGGGTACCTAGCTCCTGAATATGCACTCAGAGGACAAGTGACTAAGAAGTCAGATATCTA-CAGTTTCGGTGTTTTGATCTTGG-AAATTGTCAG-CGGCAGATGCAACTATAATTC-TAGGTTGCCTTATGAAGAACAATTTC-TGCTTGAGAGGACATGGACATGTTATGAGCAAGGG-CATTTAGAGGAGATCATAGATGCAGATATAGAAGATGATGTGGATGTCGAGGAGGCATGCCGGTTCTTGAAGGTTGGACTACTATGCACTCAAGATGCGATGAAACTCCGTCCCAACATGATCAACATCGTCCAGATGCTGACCGGAGAGAAGGATGTCAACACAGAAAGGATCACCAAGCCCTCTGTTGTTGGTGACCTGGGAGACCTGAGAGGTAGCAGCCAGCAGAGACCAATTGATCCACAGTCTCTCCTGATGAGATCCTTTGCCACCACTGACCCATCCACATCATCAGACACGACTACACGATCATCGCTATGAAAAGAAAAAAAAAGAACTTTGTATCAACCAACTTATTCCATTTGTAAATTGTTATGCTAGATAGAGAAAGAGGCTGTTATGATGCACAGGCCAGAGATGTAATTTGATCTTCCTTATCTGAAAAGATGAGAGGTTTGTGCTGGGCTGATG-GATGCCGCAGTGGTGAAAATTTGGCATTTTTCTATATTTAAGGAAATGCCACAGCCAATAGCGATTTTGCATTAAAATAAAAGA]
[+] EMBL AK063275 [CGCGGAGCTCACCAACGTCGCCACGCCCTCTCGCCGACCTCCTCCTCCTCCTCCTCCTCTTGCCTCCTCCGCTGAGGCAGCCAGTGCGTGCGCCGCGCGGGCAGCGTCGGCATTAGAGGGGTGGTGGCGGGCGGCGCGCCGACGGAGACGCCAGATATTCAGCAGAAGGCACTTCCTCTGTTTGATTTGCAAAAATGGCTTGCTGCTTTATGTTTGGGAATGATACAAAACAAACTAGTGAAGGTGAACAAGGAGAAAAAGCGGTCAGGATTTTTTCTTACAATGAGCTGAGAAGAGCTACACATGATTTTAGTGGGGCGAACAAGATTGGTGAGGGCGGCTTCGGTTCTGTGTTCAGGGGAAGGCTCAGAGATGGGACAATAGTTGCAGTAAAGGTGCTCTCTGCTACTTCAAGGCAAGGCGTCCGTGAGTTCATTAATGAACTGACAGCAATTTCCGATGTGATGCATGAAAACCTAATTACGTTAGTCGGCTGCTGTGCTGAAGGGTCTCATAGGATCCTTGTATACAATTATCTTGAGAACAACAGCCTTCAACATACACTACTAGGGTCAGGCCGTAGCAACATCCAATTCAATTGGAGAGCTCGTGTCAAAATCACTGTAGGTGTTGCCCGTGGGCTTGCATTTCTTCACGAAGAAGTTCGTCCTCACATAATACACCGGGACATAAAGGCAAGCAATATTCTTCTCGACAAGGATATGACCCCCAAAATATCTGA TTTTGGGTTGGCCAGGCTCCTCCCACCAAATGCGACTCATGTGAGCACCCGAGTTGCAGG AACAATAGGGTACCTAGCTCCTGAATATGCACTCAGAGGACAAGTGACTAAGAAGTCAGATATCTA CAGTTTCGGTGTTTTGATCTTGG AAATTGTCAG CGGCAGATGCAACTATAATTC TAGGTTGCCTTATGAAGAACAATTTC TGCTTGAGAGGACATGGACATGTTATGAGCAAGGG CATTTAGAGGAGATCATAGATGCAGATATAGAAGATGATGTGGATGTCGAGGAGGCATGCCGGTTCTTGAAGGTTGGACTACTATGCACTCAAGATGCGATGAAACTCCGTCCCAACATGATCAACATCGTCCAGATGCTGACCGGAGAGAAGGATGTCAACACAGAAAGGATCACCAAGCCCTCTGTTGTTGGTGACCTGGGAGACCTGAGAGGTAGCAGCCAGCAGAGACCAATTGATCCACAGTCTCTCCTGATGAGATCCTTTGCCACCACTGACCCATCCACATCATCAGACACGACTACACGAT ]
[+] EMBL CA755816 [ AGGCGTCCGTGAGTTCATTAATGAACTGACAGCAATTTCCGATGTGATGCATGAAAACCTAATTACGTTAGTCGGCTGCTGTGCTGAAGGGTCTCATAGGATCCTTGTATACNATTATCTTGAGAACAACAGCCTTCAACATACACTACTAGGGTCAGGCCGTAGCAACATCCAATTCAATTGGAGAGCTCGTGTCAAAATCACTGTAGGTGTTGCCCGTGGGCTTGCATTTCTTCACGAAGAAGTTCGTCCTCACATAATACACCGGGACATAAAGGCGAGCAATATTCTTCTCGACCAGGATATGACCCCCAAAATATCTGATTTTTGGGTTGGGCAGGCTCCTCCCACC AATGCGACTCATGTGAGCACCCCAGTTGCAGGAAACAATAGGGACCCTAGCT CTGGATATGCACTCAGAGGACAAGTGACTAAAAAGTCAGATATCTACCAGTTCCGNGGTTTTGATCTTGGAAAATTGTCAGCCGGCAGATGCAACTATNATTCTTAGG TGGCTTATGAGAAACAATTTCTTGCTTGAGAGGACATGGACATGTTATGAGCCAGGGCCTTTTAAAGGAGATCATAGATGCGGAT TTTAAAATGATGTGGATGTCCAAGAGGCtg ]
[-] EMBL CB643246 [ CCCCCAAAATATCTGA TTTTGGGTTGGCCAGGCTCCTCCCACCAAATGCGACTCATGTGAGCACCCGAGTTGCAGG AACAATAGGGTACCTAGCTCCTGAATATGCACTCAGAGGACAAGTGACTAAGAAGTCAGATATCTA CAGTTTCGGTGTTTTGATCTTGG AAATTGTCAG CGGCAGATGCAACTATAATTC TAGGTTGCCTTATGAAGAACAATTTC TGCTTGAGAGGACATGGACATGTTATGAGCAAGGG CATTTAGAGGAGATCATAGATGCAGATATAGAAGATGATGTGGATGTCGAGGAGGCATGCCGGTTCTTGAAGGTTGGACTACTATGCACTCAAGATGCGATGAAACTCCGTCCCAACATGATCAACATCGTCCAGATGCTGACCGGAGAGAAGGATGTCAACACAGAAAGGATCACCAAGCCCTCTGTTGTTGGTGACCTGGGAGACCTGAGAGGTAGCAGCCAGCAGAGACCAATTGATCCACAGTCTCTCCTGATGAGATCCTTTGCCACCACTGACCCATCCACATCATCAGACACGACTACACGATCATCGCTATGAAAAGAAAAAAAAAGAACTTTGTATCAACCAACTTATTCCATTTGTAAATTGTTATGCTAGATAGAGAAAGAGGCTGTTATGATGCACAGGCCAGAGATGTAATTTGATCTTCCTTATCTGAAAAGATGAGAGGTTTGTGCTGGGCTGATG GATGCCGCAGTGGTGAAAATTTGGCATTTTTCTATATTTAAGGAAATGCCACAGCCAATAGCGATTTTGCATTAAAATAAAAGA]
[-] EMBL CB636005 [ TGCAACTATAATTN TAGGTTGCCTTATGAAGAACAATTTC TGCTTGAGAGGACATGGACATGTTATGAGCAAGGG CATTTAGAGGAGATCATAGATGCAGATATAGAAGATGATGTGGATGTCGAGGAGGCATGCCGGTTCTTGAAGGTTGGACTACTATGCACTCAAGATGCGATGAAACTCCGTCCCAACATGATCAACATCGTCCAGATGCTGACCGGAGAGAAGGATGTCAACACAGAAAGGATCACCAAGCCCTCTGTTGTTGGTGACCTGGGAGACCTGAGAGGTAGCAGCCAGCAGAGACCAATTGATCCACAGTCTCTCCTGATGAGATCCTTTGCCACCACTGACCCATCCACATCATCAGACACGACTACACGATCATCGCTATGAAAAGAAAAAAAAAGAACTTTGTATCAACCAACTTATTCCATTTGTAAATTGTTATGCTAGATAGAGAAAGAGGCTGTTATGATGCACAGGCCAGAGATGTAATTTGATCTTCCTTATCTGAAAAGATGAGAGGTTTGTGCTGGGCTGATGAAATGCC ]
consensusID : consensus_13913#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 781 fasta sequence
[CGCCACGCCCTCTCGCCGACCTCCTCCTCCTCCTCCTCCTCTTGCCTCCTCCGCTGAGGCAGCCAGTGCGTGCGCCGCGCGGGCAGCGTCGGCATTAGAGGGGTGGTGGCGGGCGGCGCGCCGACGGAGACGCCAGGGTGTGGAGGAGGGTCTGACCCTTCACTTGGTGGTGTGATGTCGGTTGGGTGCGCCGATGAATTGCATTGACTGGTTTCACCATTATGTTTTTTTCCCTGTACTCCACTGGACATACTTTAATGCAGTAAACTAGTGATGCAGCAAGTTGATTAGATAGTGTAGAACTCACTAACTAAAGAATTTTATATTACTAATGCTGATGCCAGTTTCTTATTGTGTGGTCAACCAATTTGTTTTCATGGTCAAGTGGTACTGGTAAACGGACATATATTTGTTTACACAACAATGGTTGTGACATGAGACTACTTATTACAGTAACTCTGAGTCTCTGACTGGTTGTTCCTCATCACC-AAAAAAAAAAAAAACCGTTTTGATGTTCCTCTTTCTTCTGCAGATATTCAGCAGAAGGCACTTCCTCTGTTTGATTTGCAAAAATGGCTTGCTGCTTTATGTTTGGGAATGATACAAAACAAACTAGTGAAGGTGAACAAGGAGAAAAAGCGGTCAGGATTTTTTCTTACAATGAGCTGAGAAGAGCTACACATGATTTTAGTGGGGCGAACAAGATTGGTGAGGGCGGCTTCGGTTCTGTGTTCAGGGGAAGGCTCAGAGATGGGACAATAGTTGCAGTAAAGGTGCTCTC]
[+] EMBL CB643245 [CGCCACGCCCTCTCGCCGACCTCCTCCTCCTCCTCCTCCTCTTGCCTCCTCCGCTGAGGCAGCCAGTGCGTGCGCCGCGCGGGCAGCGTCGGCATTAGAGGGGTGGTGGCGGGCGGCGCGCCGACGGAGACGCCAGGGTGTGGAGGAGGGTCTGACCCTTCACTTGGTGGTGTGATGTCGGTTGGGTGCGCCGATGAATTGCATTGACTGGTTTCACCATTATGTTTTTTTCCCTGTACTCCACTGGACATACTTTAATGCAGTAAACTAGTGATGCAGCAAGTTGATTAGATAGTGTAGAACTCACTAACTAAAGAATTTTATATTACTAATGCTGATGCCAGTTTCTTATTGTGTGGTCAACCAATTTGTTTTCATGGTCAAGTGGTACTGGTAAACGGACATATATTTGTTTACACAACAATGGTTGTGACATGAGACTACTTATTACAGTAACTCTGAGTCTCTGACTGGTTGTTCCTCATCACC AAAAAAAAAAAAAACCGTTTTGATGTTCCTCTTTCTTCTGCAGATATTCAGCAGAAGGCACTTCCTCTGTTTGATTTGCAAAAATGGCTTGCTGCTTTATGTTTGGGAATGATACAAAACAAACTAGTGAAGGTGAACAAGGAGAAAAAGCGGTCAGGATTTTTTCTTACAATGAGCTGAGAAGAGCTACACATGATTTTAGTGGGGCGAACAAGATTGGTGAGGGCGGCTTCGGTTCTGTGTTCAGGGGAAGGCTCAGAGATGGGACAATAGTTGCAGTAAAGGTGCTCTC]
[+] EMBL CB636004 [ CCCTCTCGCCGACCTCCTCCTCCTCCTCCTCCTCTTGCCTCCTCCGCTGAGGCAGCCAGTGCGTGCGCCGCGCGGGCAGCGTCGGCATTAGAGGGGTGGTGGCGGGCGGCGCGCCGACGGAGACGCCAGGGTGTGGAGGAGGGTCTGACCCTTCACTTGGTGGTGTGATGTCGGTTGGGTGCGCCGATGAATTGCATTGACTGGTTTCACCATTATGTTTTTTTCCCTGTACTCCACTGGACATACTTTAATGCAGTAAACTAGTGATGCAGCAAGTTGATTAGATAGTGTAGAACTCACTAACTAAAGAATTTTATATTACTAATGCTGATGCCAGTTTCTTATTGTGTGGTCAACCAATTTGTTTTCATGGTCAAGTGGTACTGGTAAACGGACATATATTTGTTTACACAACAATGGTTGTGACATGAGACTACTTATTACAGTAACTCTGAGTCTCTGACTGGTTGTTCCTCATCACCAAAAAAAAAAAAAAACCGTTTTGATGTTCCTCTTTCTTCTGCAGATATTCAGCAGAAGGCACTTCCTCTGTTTGATTTGCAAAAATGGCTTGCTGCTTTATGTT ]
consensusID : consensus_13913#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence
[AGGACCAATGGGCGCCCGCCCCAAACAAGGAGCAACAGTCGTCAGGATGCTCACCGGGGAGAAGCGCTTTCTCGGTGCACCGGATCACCCAGCCAGCCATGGATCACCGACGTCGCCGACCTCAAGGTCACCACCACGCCACCCAAGAAGGAGAACGAGACAAACACGGTCATCCAACAATGAGATCGTTCAGCACCACCTGATGAGACGGACCTTTCTCATCGTCAAGAGACGCCGACGCAGACGTCTATCTGAAAAAAAAAACAAGAAGAAGAACTGGAAATGGTGGAGACAGGACTAGTGTTTTTTTTGTTTTGTATATTATGGCTCCGAAAGGGGATAGGATTACGTTCAATTTTTTTTTTTCTCTTTTTGGAGAGAGTTTCGTGTTTGTTTGATTTTTGTGACGAGGAGATTTTAAGATAGCAGCGTATGGCTTCTCAAAA]
[+] EMBL BI801437 [AGGACCAATGGGCGCCCGCCCCAAACAAGGAGCAACAGTCGTCAGGATGCTCACCGGGGAGAAGCGCTTTCTCGGTGCACCGGATCACCCAGCCAGCCATGGATCACCGACGTCGCCGACCTCAAGGTCACCACCACGCCACCCAAGAAGGAGAACGAGACAAACACGGTCATCCAACAATGAGATCGTTCAGCACCACCTGATGAGACGGACCTTTCTCATCGTCAAGAGACGCCGACGCAGACGTCTATCTGAAAAAAAAAACAAGAAGAAGAACTGGAAATGGTGGAGACAGGACTAGTGTTTTTTTTGTTTTGTATATTATGGCTCCGAAAGGGGATAGGATTACGTTCAATTTTTTTTTTTCTCTTTTTGGAGAGAGTTTCGTGTTTGTTTGATTTTTGTGACGAGGAGATTTTAAGATAGCAGCGTATGGCTTCTCAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13913#0 TAGAGAGAGAAGTCAAAGACTCTCTCCTTCTCGTCACCTTCTTCCTCCCCACGCCGCGCT 60
consensus_13913#3 ------------------------------------------------------------
consensus_13913#1 ------------------------------------------------------------
consensus_13913#2 ------------------------------------------------------------
consensus_13913#0 CTCCTCCCCTCTTAAACCACTAGCGCCGCCTCCGCGCTCTCTCCTGCCTCCTCTCCTCGC 120
consensus_13913#3 ------------------------------------------------------------
consensus_13913#1 CGCGGAGCTCACCAACGTCGCCACGCCCTCTCGCCGACCTCCTCCTCCTCCTCCTCCTCT 60
consensus_13913#2 ------------------------------------------------------------
consensus_13913#0 CTCTCCTCACCCTGTGGGTTGGTCGGCGTGTAGCTGCTTGCTTTGCTCTCACTGCCGGGG 180
consensus_13913#3 ------------------------------------------------------------
consensus_13913#1 TGCCTCCTCCGCTGAGGCAGCCAGTGCGTGCGCCGCGCGGGCAGCGTCGGCATTAGAGGG 120
consensus_13913#2 ------------------------------------------------------------
consensus_13913#0 CTCGATCTGCTTGCTCTGCAGAAATTCTTTCCAATTCATTGCTTCTTGTGGCCTGTGGGC 240
consensus_13913#3 ------------------------------------------------------------
consensus_13913#1 GTGGTGGCGGGCGGCGCGCCGACGGAGACGCCAGATATTCAGCAGAAGGCACTTCCTCTG 180
consensus_13913#2 ------------------------------------------------------------
consensus_13913#0 ACCTCTACAATTTGATTTCAGATGGATTGCTGCTTTATGTTCAGAAAAAAACAACCTGTT 300
consensus_13913#3 ------------------------------------------------------------
consensus_13913#1 TTTGATTTGCAAAAATGGCTTGCTGCTTTATG-TTTGGGAATGATACAAAACAAACTAGT 239
consensus_13913#2 ------------------------------------------------------------
consensus_13913#0 GAAGGTGATGATGGTGAACATAGAGTGAAGATATTTTCTTACAGTGAGTTGAGAAAGGCT 360
consensus_13913#3 ------------------------------------------------------------
consensus_13913#1 GAAGGTGAACAAGGAGAAAAAGCGGTCAGGATTTTTTCTTACAATGAGCTGAGAAGAGCT 299
consensus_13913#2 ------------------------------------------------------------
consensus_13913#0 ACCCATGATTTTAGTGGGGCAAATAAGATTGGAGAGGGTGGTTTTGGCTCTGTGTTCAGG 420
consensus_13913#3 ------------------------------------------------------------
consensus_13913#1 ACACATGATTTTAGTGGGGCGAACAAGATTGGTGAGGGCGGCTTCGGTTCTGTGTTCAGG 359
consensus_13913#2 ------------------------------------------------------------
consensus_13913#0 GGAGTGCTTAGAGATGGGACAACCGTTGCCGTAAAGGTGCTGTCTGCTACTTCAAGACAA 480
consensus_13913#3 ------------------------------------------------------------
consensus_13913#1 GGAAGGCTCAGAGATGGGACAATAGTTGCAGTAAAGGTGCTCTCTGCTACTTCAAGGCAA 419
consensus_13913#2 ------------------------------------------------------------
consensus_13913#0 GGCGTCCGAGAGTTCTTGACTGAACTTACAGCAATTTCTGACATCAAGCATGAAAACCTC 540
consensus_13913#3 ------------------------------------------------------------
consensus_13913#1 GGCGTCCGTGAGTTCATTAATGAACTGACAGCAATTTCCGATGTGATGCATGAAAACCTA 479
consensus_13913#2 ------------------------------------------------------------
consensus_13913#0 GTCACACTTATTGGTTGCTGTGCTGAAGGATCTCATAGGATCCTTGTTTACAATTATCTT 600
consensus_13913#3 ------------------------------------------------------------
consensus_13913#1 ATTACGTTAGTCGGCTGCTGTGCTGAAGGGTCTCATAGGATCCTTGTATACAATTATCTT 539
consensus_13913#2 ------------------------------------------------------------
consensus_13913#0 GAGAACAACAGTCTTGCACAGACATTGCTAGGATCTAGGGGTAGCAACATCCGGTTCGAT 660
consensus_13913#3 ------------------------------------------------------------
consensus_13913#1 GAGAACAACAGCCTTCAACATACACTACTAGGGTCAGGCCGTAGCAACATCCAATTCAAT 599
consensus_13913#2 ------------------------------------------------------------
consensus_13913#0 TGGAGGACCCGTGTAAAAATTGCTGTGGGTGTTGCTCGTGGAATTGCATTTTTACATGAG 720
consensus_13913#3 ------------------------------------------------------------
consensus_13913#1 TGGAGAGCTCGTGTCAAAATCACTGTAGGTGTTGCCCGTGGGCTTGCATTTCTTCACGAA 659
consensus_13913#2 ------------------------------------------------------------
consensus_13913#0 GAAATTCGCCCTCCGATTATCCACCGTGACATAAAGGCGAGCAACATTCTTCTTGACAAG 780
consensus_13913#3 ------------------------------------------------------------
consensus_13913#1 GAAGTTCGTCCTCACATAATACACCGGGACATAAAGGCAAGCAATATTCTTCTCGACAAG 719
consensus_13913#2 ------------------------------------------------------------
consensus_13913#0 GACCTCACCCCAAAAATTTCTGATTTCGGATTGGCAAGGCTCCTTCCACCCAACGCAACT 840
consensus_13913#3 ------------------------------------------------------------
consensus_13913#1 GATATGACCCCCAAAATATCTGATTTTGGGTTGGCCAGGCTCCTCCCACCAAATGCGACT 779
consensus_13913#2 -----------CGCCACGCCCTCTCGCCGACCTCCTCCTCCTCCTCCTCCTCTTGCCTCC 49
consensus_13913#0 CATGTGAGCACCCGAGTTGCAGGCACATTAGGATACCTGGCACCTGAATACGCTATCCGA 900
consensus_13913#3 ------------------------------------------------------------
consensus_13913#1 CATGTGAGCACCCGAGTTGCAGGAACAATAGGGTACCTAGCTCCTGAATATGCACTCAGA 839
consensus_13913#2 TCCGCTGAGGCAGCCAGTGCGTGCGCCGCGCGGG---CAGCGTCGGCATTAGAGGGGTGG 106
consensus_13913#0 GGCCAGGTGACAAAGAAATCCGACATCTATAGCTTCGGTGTTCTTCTACTGGAAATCGTT 960
consensus_13913#3 ------------------------------------------------------------
consensus_13913#1 GGACAAGTGACTAAGAAGTCAGATATCTACAGTTTCGGTGTTTTGATCTTGGAAATTGTC 899
consensus_13913#2 TGGCGGGCGGCGCGCCGACGGAGACGCCAGGGTGTGGAGGAGGGTCTGACCCTTCACTTG 166
consensus_13913#0 AGCGGCAGATGCAACACCAACACAAGATTGCCTTATGAAGATCAATTTCTTCTCGAAAGG 1020
consensus_13913#3 ------------------------------------------------------------
consensus_13913#1 AGCGGCAGATGCAACTATAATTCTAGGTTGCCTTATGAAGAACAATTTCTGCTTGAGAGG 959
consensus_13913#2 GTGGTGTGATGTCGGTTGGGTGCGCCGATGAATTGCATTGACTGGTTTCACCATTATGTT 226
consensus_13913#0 ACATGGGTACGCTACGAGCAAGAACGCCTGGCTGAGATCATCGATGCTGACCTGGGGAAT 1080
consensus_13913#3 ------------------------------------------------------------
consensus_13913#1 ACATGGACATGTTATGAGCAAGGGCATTTAGAGGAGATCATAGATGCAGATATAGAAGAT 1019
consensus_13913#2 TTTTTCCCTGTACTCCACTGGACATACTTTAATGCAGTAA--ACTAGTGATGCAGCAAGT 284
consensus_13913#0 GACCTGGACGTCGACGAGGCATGCCGGTTCCTGAAGATTGGCCTGCTA----TGCACACA 1136
consensus_13913#3 -----------------------------------------------------------A 1
consensus_13913#1 GATGTGGATGTCGAGGAGGCATGCCGGTTCTTGAAGGTTGGACTACTA----TGCACTCA 1075
consensus_13913#2 TGATTAGATAGTGTAGAA-CTCACTAACTAAAGAATTTTATATTACTAATGCTGATGCCA 343
*
consensus_13913#0 GGACGCAATGGCGCGCCGCCCCAACATG-AGCACC-GTC--GTCAGGATGCTCACCGGGG 1192
consensus_13913#3 GGACCAATGGGCGCCCGCCCCAAACAAGGAGCAACAGTC--GTCAGGATGCTCACCGGGG 59
consensus_13913#1 AGATGCGATGAAACTCCGTCCCAACATG-ATCAAC-ATC--GTCCAGATGCTGACCGGAG 1131
consensus_13913#2 GTTTCTTATTGTGTGGTCAACCAATTTGTTTTCATGGTCAAGTGGTACTGGTAAACGGAC 403
* ** * ** ** ** * * ***
consensus_13913#0 AGAAGCACTT-CTCGGTGCACCGGATCACCAGGCCGGCCATG-ATCAC--CGACTTCGCC 1248
consensus_13913#3 AGAAGCGCTTTCTCGGTGCACCGGATCACCCAGCCAGCCATGGATCAC--CGACGTCGCC 117
consensus_13913#1 AGAAGGATGT-CAACACAGAAAGGATCACCAAGCCCTCTGTT-GTTGG--TGACCTGGGA 1187
consensus_13913#2 ATATATTTGTTTACACAACAATGGTTGTGACATGAGACTACTTATTACAGTAACTCTGAG 463
* * * * ** * * * ** *
consensus_13913#0 GACCTCAAGGTCAGCAGCA-GCCAGC--AGAAGGAGAACGAGACAA-CACGGTCATCCAA 1304
consensus_13913#3 GACCTCAAGGTCACCACCACGCCACCCAAGAAGGAGAACGAGACAAACACGGTCATCCAA 177
consensus_13913#1 GACCTGAGAGGTAGCA----GCCAGC------AGAGACCAATTGATCCACAGTC-TCTCC 1236
consensus_13913#2 TCTCTGACTGGTTGTTCCTCATCACCAAAAAAAAAAAAAACCGTTTTGATGTTCCTCTTT 523
** * * ** * * * * ** **
consensus_13913#0 CA--TGAGATCGTTCAGCACCAC-TGATGAAACGGAGCCTTTCTCATCGTCA-GAGACGC 1360
consensus_13913#3 CAA-TGAGATCGTTCAGCACCACCTGATGAGACGGA-CCTTTCTCATCGTCAAGAGACGC 235
consensus_13913#1 TGA-TGAGATCCTTTGCCACCAC-TGAC---------CCATCCACATCATCA-GACACGA 1284
consensus_13913#2 CTTCTGCAGATATTCAGCAGAAGGCACTTCC------TCTGTTTGATTTGCAAAAATGGC 577
** ** ** * * ** ** * *
consensus_13913#0 CGACGCAGACGTCTATCTGAA--AAAAAAAAACAAGAAGAAGAACTGGAAATG-TGGAGA 1417
consensus_13913#3 CGACGCAGACGTCTATCTGAA--AAAAAAAA-CAAGAAGAAGAACTGGAAATGGTGGAGA 292
consensus_13913#1 CTACACGATCATCGCTATGAA--AAGAAAAAAAAAGAACTTTGTATCAACCAACTTATTC 1342
consensus_13913#2 TTGCTGCTTTATGTTTGGGAATGATACAAAACAAACTAGTGAAGGTGAACAAGGAGAAAA 637
* * * *** * **** ** * * *
consensus_13913#0 CAGGACTAGTGTTTTTTTTGTGTTTGTAT--ATTATTGCTCCGAAAGGGGATAGGATTAC 1475
consensus_13913#3 CAGGACTAGTGTTTTTTTTGT-TTTGTAT--ATTATGGCTCCGAAAGGGGATAGGATTAC 349
consensus_13913#1 CATTTGTAA-ATTGTTATGCTAGATAGAG--AAAGAGGCTGTTATGATGCACAGGCCAGA 1399
consensus_13913#2 AGCGGTCAGGATTTTTTCTTACAATGAGCTGAGAAGAGCTACACATGATTTTAGTGGGGC 697
* ** ** * * *** **
consensus_13913#0 GTTCAATTTTTTTTT--CTCTTTTTGGA----GAGAGTTTCGTGTTTGTTTGATTTTTGT 1529
consensus_13913#3 GTTCAATTTTTTTTTTTCTCTTTTTGGA----GAGAGTTTCGTGTTTGTTTGATTTTTGT 405
consensus_13913#1 GATGTAATTTGATCTTCCTTATCTGAAAAGATGAGAGGTTTGTGCTGGGCTGATGGATGC 1459
consensus_13913#2 GAACAAGATTGGTGAGGGCGGCTTCGGT---TCTGTGTTCAGGGGAAGGCTCAGAGATGG 754
* * ** * * * * * * * * * * **
consensus_13913#0 GACGAGGAGATGTTTAAGATAGGCAGCGTATTGCTTCTCGATCTGGGTGTAAATATCTCG 1589
consensus_13913#3 GACGAGGAGAT-TTTAAGATAG-CAGCGTATGGCTTCTCAAAA----------------- 446
consensus_13913#1 CGCAGTGG----TGAAAATTTGGCATTTTTCTATATTTAAGGAAATGCCACAGCCAATAG 1515
consensus_13913#2 GACAATAGT---TGCAGTAAAGGTGCTCTC------------------------------ 781
* * * * *
consensus_13913#0 AAATGAAGATGTTCAAAGCCTCAAAGATAAGCTCTGCACGATTCACAAAAAAAAAAAAAA 1649
consensus_13913#3 ------------------------------------------------------------
consensus_13913#1 CGATTTTGCATTAAAATAAAAGA------------------------------------- 1538
consensus_13913#2 ------------------------------------------------------------
consensus_13913#0 AAAAACTCG 1658
consensus_13913#3 ---------
consensus_13913#1 ---------
consensus_13913#2 ---------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||