|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13925#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1558 fasta sequence
[GGCATCCTCCTCCTCCTCGGCGACCGGAGACCGAGGCAGCTCGGCGTCGCCCTGCGGCGTCGGCCAAGACGCTCCCAGGCCGAGACCGCGCCGCCCAGCCGCCGCGGCGGCGGAGGCTGCTGGGGGCGGTGGGCGGCACGCGCCGCGGCGGGGCTGGTGCTCCATCTGGCGGTATGCTCCGTCGCCTTGCTCTTCCCCACCTATGCGCGCGCCTGCGTGGGCGGCGCTCTCCCCCCGCCACCTCCTGCGGCGGCGATGGCGGCGGAGGAGGACGACGACGACGAGGAGTGGAAGGTCGCGCTGCAGCAGTGGAAGTCCAAGACGTATTCCCTCTCTGTTCCCCTGCGGGTCGTCGCGCTCCGTGGCTCCTTCCCTCCTGCGTGGATCAAGGATTTTGTTGAAGCTCAGGGGAAGAGACTGAAATTCAGTCCTGAGTTCAGGACAAACCTTGATGTGCTCTACTCCGAGATGTCACAATGTTTGGACAAGGGTCAACTTAAGCAAAAATCCGCAATGGCGGCTGATGTTGTTTCAATTGGGGACTCTTGGCTCGGGTATGCCATTCGTAAGGGATTGGTAGAACCTGTCAAGAACGCTGAAGAACAGGATTGGTTTCAGAGCCTAAGTAACAGATGGAAGATTCATCTGTGCAGGAACCGCAATGGTGAGGTAGATCCTAATGGCTCAATATGGGCGGTTCCATACAGATGGGGCACCGTGGTCATTGCTTACAAGAAAAACAAGTTCAAAAGGCATAATCTGAAACCGATACAGGACTGGGGGGATTTGTGGAGGCCTGAACTTGCCGGAAAAATTTCAATGGTGGATTCTCCAAGAGAAGTCATTGGTGCAGTCCTGAAGCATCTGGGATCCTCATACAACACTAATGACATGGAATCAGAAATCACTGGTGGTAGGGAAACAGTCTTAGAAAGCTTGACACAACTACAGAACCAGGTTCAATTGTTTGACAGCACGAACTATCTGAAATCATTTGGAGTAGGAGATGTATGGGTTGCAGTGGGTTGGAGCAGTGATGTTATTCCTGCTGCGAAGCGAA-TGTCTGACGTTGCAGTGGTGGTTCCCAAGTCAGGCAGTAGTCTATGGGCTGATCTATGGGCGATACCATCTGCAACCAAATTTCAGACTGATCGAATTGGCGGCAGAACTAGAGGCCCATCTCCACTTATCAACCAGTGGTTTGACTTC-TGCCTGCAGAGTGCTAGAAGCTTACCCTTTCGGCAAGATGTCATCCCAGGAGCATCGCCACTATTCCTCGAGAAACCGGTGCCTGAAGTTCCTCAAGAACGAAACAAGA-GAAAGCCAAAGCTGGAGACGAATCTTGTCAGAGGAGCACCTCCCCTTGAAATCCT-GGAAAAATGTGAGTTTCTAGAGCCTCTATCAGAAAAGGCGCTGGACGATTACCAATGGCTGATAACGAGAATGCAGAGACCAAATCGTGGTCTGTTTGGAAATTTGTTGCAAAATATATCGAGTGTACTGAATTTCAAATCAAGAGTTTAAGAATTTCTGTGCAAAAAAAACCCTTAAAAGGAAA]
[+] EMBL CB655663 [GGCATCCTCCTCCTCCTCGGCGACCGGAGACCGAGGCAGCTCGGCGTCGCCCTGCGGCGTCGGCCAAGACGCTCCCAGGCCGAGACCGCGCCGCCCAGCCGCCGCGGCGGCGGAGGCTGCTGGGGGCGGTGGGCGGCACGCGCCGCGGCGGGGCTGGTGCTCCATCTGGCGGTATGCTCCGTCGCCTTGCTCTTCCCCACCTATGCGCGCGCCTGCGTGGGCGGCGCTCTCCCCCCGCCACCTCCTGCGGCGGCGATGGCGGCGGAGGAGGACGACGACGACGAGGAGTGGAAGGTCGCGCTGCAGCAGTGGAAGTCCAAGACGTATTCCCTCTCTGTTCCCCTGCGGGTCGTCGCGCTCCGTGGCTCCTTCCCTCCTGCGTGGATCAAGGATTTTGTTGAAGCTCAGGGGAAGAGACTGAAATTCAGTCCTGAGTTCAGGACAAACCTTGATGTGCTCTACTCCGAGATGTCACAATGTTTGGACAAGGGTCAACTTAAGCAAAAATCCGCAATGGCGGCTGATGTTGTTTCAATTGGGGACTCTTGGCTCGGGTATGCCATTCGTAAGGGATTGGTAGAACCTGTCAAGAACGCTGAAGAACAGGATTGGTTTCAGAGCCTAAGTAACAGATGGAAGATTCATCTGTGCAGGAACCGCAATGGTGAGGTAGATCCTAATGGCTCAATATGGGCGGTTCCATACAGATGGGGCACCGTGGTCATTGCTTACAAGAAAAACAAGTTCAAAAGGCATAATCTGAAACC ]
[+] EMBL CB684993 [ ccgcctttACGCCACCAGGCCGAGACCGCGCCGCCCAGCCGCCGCGGCGGCGGAGGCTGCTGGGGGCGGTGGGCGGCACGCGCCGCGGCGGGGCTGGTGCTCCATCTGGCGGTATGCTCCGTCGCCTTGCTCTTCCCCACCTATGCGCGCGCCTGCGTGGGCGGCGCTCTCCCCCCGCCACCTCCTGCGGCGGCGATGGCGGCGGAGGAGGACGACGACGACGAGGAGTGGAAGGTCGCGCTGCAGCAGTGGAAGTCCAAGACGTATTCCCTCTCTGTTCCCCTGCGGGTCGTCGCGCTCCGTGGCTCCTTCCCTCCTGCGTGGATCAAGGATTTTGTTGAAGCTCAGGGGAAGAGACTGAAATTCAGTCCTGAGTTCAGGACAAACCTTGATGTGCTCTACTCCGAGATGTCACAATGTTTGGACAAGGGTCAACTTAAGCAAAAATCCGCAATGGCGGCTGATGTTGTTTCAATTGGGGACTCTTGGCTCGGGTATGCCATTCGTAAGGGATTGGTAGAACCTGTCAAGAACGCTGAAGAACAGGATTGGTTTCAGAGCCTAAGTAACAGATGGAAGATTCATCTGTGCAGGAACCGCAATGGTGAGGTAGATCCTAATGGCTCAATATGGGCGGTTCCATACAGATGGGGCACCGTGGTCATTGCTTACAAGAAAAACAAGTTCAAAAGGCATAATCTGAAACCGATACAGGACTGGGGGGATTTGTGGAGGCCTGAACTTGCCGGAAAAATTTCA ]
[+] EMBL AK120467 [ TCCTGAGTTCAGGACAAACCTTGATGTGCTCTACCCCGAGATGTCACAATGTTTGGACAAGGGTCAACTTAAGCAAAAATCCGCAATGGCGGCTGATGTTGTTTCAATTGGGGACTCTTGGCTCGGGTATGCCATTCGTAAGGGATTGGTAGAACCTGTCAAGAACGCTGAAGAACAGGATTGGTTTCAGAGCCTAAGTAACAGATGGAAGATTCATCTGTGCAGGAACCGCAATGGTGAGGTAGATCCTAATGGCTCAATATGGGCGGTTCCATACAGATGGGGCACCGTGGTCATTGCTTACAAGAAAAACAAGTTCAAAAGGCATAATCTGAAACCGATACAGGACTGGGGGGATTTGTGGAGGCCTGAACTTGCCGGAAAAATTTCAATGGTGGATTCTCCAAGAGAAGTCATTGGTGCAGTCCTGAAGCATCTGGGATCCTCATACAACACTAATGACATGGAATCAGAAATCACTGGTGGTAGGGAAACAGTCTTAGAAAGCTTGACACAACTACAGAACCAGGTTCAATTGTTTGACAGCACGAACTATCTGAAATCATTTGGAGTAGGAGATGTATGGGTTGCAGTGGGTTGGAGCAGTGATGTTATTCCTGCTGCGAAGCGAA TGTCTGACGTTGCAGTGGTGGTTCCCAAGTCAGGCAGTAGTCTATGGGCTGATCTATGGGCGATACCATCTGCAACCAAATTTCAGACTGATCGAATTGGCGGCAGAACTAGAGGCCCATCTCCACTTATCAACCAGTGGTTTGACTTC TGCCTGCAGAGTGCTAGAAGCTTACCCTTTCGGCAAGATGTCATCCCAGGAGCATCGCCACTATTCCTCGAGAAACCGGTGCCTGAAGTTCCTCAAGAACGAAACAAGA GAAAGCCAAAGCTGGAGACGAATCTTGTCAGAGGAGCACCTCCCCTTGAAATCCT GGAAAAATGTGAGTTTCTAGAGCCTCTATCAGAAAAGGCGCTGGACGATTACCAATGGCTGATAACGAGAATGCAGAGACCAAATCGTGGTCTGTTTGGAAATTTGTTGCAAAATATATCGAGTGTACTGAATTTCAAATCAAGAGTTTAAGA ]
[-] EMBL CB655664 [ AACCTGAATGTGCTCTACTCCGAGATGTCACAATGTTTGGACAAGGGTCAACTTAAGCAAAAATCCGCAATGGCGGCTGATGTTGTTTCAATTGGGGACTCTTGGCTCGGGTATGCCATTCGTAAGGGATTGGTAGAACCTGTCAAGAACGCTGAAGAACAGGATTGGTTTCAGAGCCTAAGTAACAGATGGAAGATTCATCTGTGCAGGAACCGCAATGGTGAGGTAGATCCTAATGGCTCAATATGGGCGGTTCCATACAGATGGGGCACCGTGGTCATTGCTTACAAGAAAAACAAGTTCAAAAGGCATAATCTGAAACCGATACAGGACTGGGGGGATTTGTGGAGGCCTGAACTTGCCGGAAAAATTTCAATGGTGGATTCTCCAAGAGAAGTCATTGGTGCAGTCCTGAAGCATCTGGGATCCTCATACAACACTAATGACATGGAATCAGAAATCACTGGTGGTAGGGAAACAGTCTTAGAAAGCTTGACACAACTACAGAACCAGGTTCAATTGTTTGACAGCACGAACTATCTGAAATCATTTGGAGTAGGAGATGTATGGGTTGCAGTGGGTTGGAGCAGTGATGTTATTCCTGCTGCGAAGCGAA TGTCTGACGTTGCAGTGGTGGTTCCCAAGTCAGGCAGTAGTCTATGGGCTGATCTATGGGCGATACCATCTGCAACCAAATTTCAGACTGATCGAATTGGCGGCAGAACTAGAGGCCCATCTCCACTTATCAACCAGTGGTTTGACTTC TGCCTGCAGAGTGCTAGAAGCTTACCCTTTCGGCAAGATGTCATCCCAGGAGCATCG ]
[-] EMBL CB684994 [ TGGTGGATTCTCCAAGAGAAGTCATTGGTGCAGTCCTGAAGCATCTGGGATCCTCATACAACACTAATGACATGGAATCAGAAATCACTGGTGGTAGGGAAACAGTCTTAGAAAGCTTGACACAACTACAGAACCAGGTTCAATTGTTTGACAGCACGAACTATCTGAAATCATTTGGAGTAGGAGATGTATGGGTTGCAGTGGGTTGGAGCAGTGATGTTATTCCTGCTGCGAAGCGAA TGTCTGACGTTGCAGTGGTGGTTCCCAAGTCAGGCAGTAGTCTATGGGCTGATCTATGGGCGATACCATCTGCAACCAAATTTCAGACTGATCGAATTGGCGGCAGAACTAGAGGCCCATCTCCACTTATCAACCAGTGGTTTGACTTC TGCCTGCAGAGTGCTAGAAGCTTACCCTTTCGGCAAGATGTCATCCCAGGAGCATCGCCACTATTCCTCGAGAAACCGGTGCCTGAAGTTCCTCAAGAACGAAACAAGA GAAAGCCAAAGCTGGAGACGAATCTTGTCAGAGGAGCCCCTCCCCTTGAAATCCT GGAAAAATGTGAGTTTCTAGAGCCTCTATCAGAAAAGGCGCTGGACGATTACCAATGGCTGATAACGAGAATGCAGAGACCAAATCGTGGTCTGTTTGGAAATTTGTTGCAAAATATATCGAGTGTACTGAATTTCAAAGCAAGAGTTTAAGAATTTCTGTGCAAAAAAAACCCTTAAAAGGAAA]
[+] EMBL OSS13782A [ TTCAATTGTTTGACAGCACGAACTATCTGAAATCATTTGGAGTAGGAGATGTATGGGTTGCAGTGGGTTGGAGCAGTGATGTTATTCCTGCTGCGAAG GAANTGTCTGACGTTGCAGTGGTGGTTCCCAAGTCAGGCAGTAGTCTATGGGCTGATCTATGGGCGATACCATCTGCAACCAAATTTCAGACTGATCGAATTGGCGGCAGAACTAGAGGCCCATCTCCACTTATCAACCAGTGGTTTGACTTCTTGCCTGCAGAGTGCTAGAAGCTTACCCTTTCGGCAAGATGTCATCCCAGGAGCATCGCCACTATTCCTCGAGAAACCGGTGCCTGAAGTTCCTCAAGAACGGAACAAGAGGAAAGCCAAAGCTGGAGACGGATCTTGTCAGAGGAGNACCTTCCCTTGGAATCCTGGGAAAAATGTGAGTTT TAGAGC ]
consensusID : consensus_13925#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1466 fasta sequence
[GAGGGGAAGCCCCTCCTCTTCCCCCACCCTCGCATCCCCGTCGCGGCCCTCGTCCCCAACCACCTTCCCCGCCGCCCTCGCGCTTCCGGCATCCTCCTCCTCCTCGGCGACCGGAGACCGAGGCAGCTCGGCGTCGCCCTGCGGCGTCGGCCAAGACGCCACCAGGCCGAGACCGCGCCGCCCAGCCGCCGCGGCGGCGGAGGCTGCTGGGGGCGGTGGGCGGCACGCGCCGCGGCGGGGCTGGTGCTCCATCTGGCGGTATGCTCCGTCGCCTTGCTCTTCCCCACCTATGCGCGCGCCTGCGTGGGCGGCGCTCTCCCCCCGCCACCTCCTGCGGCGGCGATGGCGGCGGAGGAGGACGACGACGACGAGGAGTGGAAGGTCGCGCTGCAGCAGTGGAAGTCCAAGACGTATTCCCTCTCTGTTCCCCTGCGGGTCGTCGCGCTCCGTGGCTCCTTCCCTCCTGCGTGGATCAAGGATTTTGTTGAAGCTCAGGGGAAGAGACTGAAATTCAGTCCTGAGTTCAGGACAAACCTTGATGTGCTCTACTCCGAGATGTCACAATGTTTGGACAAGGGTCAACTTAAGCAAAAATCCGCAATGGCGGCTGATGTTGTTTCAATTGGGGACTCTTGGCTCGGGTATGCCATTCGTAAGGGATTGGTAGAACCTGTCAAGAACGCTGAAGAACAGGATTGGTTTCAGAGCCTAAGTAACAGATGGAAGGAACCGCAATGGTGAGGTAGATCCTAATGGCTCAATATGGGCGGTTCCATACAGATGGGGCACCGTGGTCATTGCTTACAAGAAAAACAAGTTCAAAAGGCATAATCTGAAACCGATACAGGACTGGGGGGATTTGTGGAGGCCTGAACTTGCCGGAAAAATTTCAATGGTGGATTCTCCAAGAGAAGTCATTGGTGCAGTCCTGAAGCATCTGGGATCCTCATACAACACTAATGACATGGAATCAGAAATCACTGGTGGTAGGGAAACAGTCTTAGAAAGCTTGACACAACTACAGAACCAGGTTCAATTGTTTGACAGCACGAACTATCTGAAATCATTTGGAGTAGGAGATGTATGGGTTGCAGTGGGTTGGAGCAGTGATGTTATTCCTGCTGCGAAGCGAATGTCTGACGTTGCAGTGGTGGTTCCCAAGTCAGGCAGTAGTCTATGGGCTGATCTATGGGCGATACCATCTGCAACCAAATTTCAGACTGATCGAATTGGCGGCAGAACTAGAGGCCCATCTCCACTTATCAACCAGTGGTTTGACTTCTGCCTGCAGAGTG-CTAGAAGCTTACCCTTTCGGCAAGATGTCATCCCAGGAGCAGCGCCATCATTCCTCGAGAAACCGGTGCCTGAAGTTCCTCAAGAACGAAACAAGAGAAAGCCAAAGCTGGNNNNNNATCTTGTCANNNNNNCACCTCNCNNNGAAATCCTNNNNNNATGTNNNNNTCTNN]
[+] EMBL CB648137 [GAGGGGAAGCCCCTCCTCTTCCCCCACCCTCGCATCCCCGTCGCGGCCCTCGTCCCCAACCACCTTCCCCGCCGCCCTCGCGCTTCCGGCATCCTCCTCCTCCTCGGCGACCGGAGACCGAGGCAGCTCGGCGTCGCCCTGCGGCGTCGGCCAAGACGCCACCAGGCCGAGACCGCGCCGCCCAGCCGCCGCGGCGGCGGAGGCTGCTGGGGGCGGTGGGCGGCACGCGCCGCGGCGGGGCTGGTGCTCCATCTGGCGGTATGCTCCGTCGCCTTGCTCTTCCCCACCTATGCGCGCGCCTGCGTGGGCGGCGCTCTCCCCCCGCCACCTCCTGCGGCGGCGATGGCGGCGGAGGAGGACGACGACGACGAGGAGTGGAAGGTCGCGCTGCAGCAGTGGAAGTCCAAGACGTATTCCCTCTCTGTTCCCCTGCGGGTCGTCGCGCTCCGTGGCTCCTTCCCTCCTGCGTGGATCAAGGATTTTGTTGAAGCTCAGGGGAAGAGACTGAAATTCAGTCCTGAGTTCAGGACAAACCTTGATGTGCTCTACTCCGAGATGTCACAATGTTTGGACAAGGGTCAACTTAAGCAAAAATCCGCAATGGCGGCTGATGTTGTTTCAATTGGGGACTCTTGGCTCGGGTATGCCATTCGTAAGGGATTGGTAGAACCTGTCAAGAACGCTGAAGAACAGGATTGGTTTCAGAGCCTAAGTAACAGATGGAAGGAACCGCAATGGTGAGGTAGATCCTAATGGCT ]
[+] EMBL CB675759 [ AGTGGAAGGTCGCGCTGCAGCAGTGGAAGTCCAAGACGTATTCCCTCTCTGTTCCCCTGCGGGTCGTCGCGCTCCGTGGCTCCTTCCCTCCTGCGTGGATCAAGGATTTTGTTGAAGCTCAGGGGAAGAGACTGAAATTCAGTCCTGAGTTCAGGACAAACCTTGATGTGCTCTACTCCGAGATGTCACAATGTTTGGACAAGGGTCAACTTAAGCAAAAATCCGCAATGGCGGCTGATGTTGTTTCAATTGGGGACTCTTGGCTCGGGTATGCCATTCGTAAGGGATTGGTAGAACCTGTCAAGAACGCTGAAGAACAGGATTGGTTTCAGAGCCTAAGTAACAGATGGAAGGAACCGCAATGGTGAGGTAGATCCTAATGGCTCAATATGGGCGGTTCCATACAGATGGGGCACCGTGGTCATTGCTTACAAGAAAAACAAGTTCAAAAGGCATAATCTGAAACCGATACAGGACTGGGGGGATTTGTGGAGGCCTGAACTTGCCGGAAAAATTTCAATGGTGGATTCTCCAAGAGAAGTCATTGGTGCAGTCCTGAAGCATCTGGGATCCTCATACAACACTAATGACATGGAATCAGAAATCACTGGTGGTAGGGAAACAGTCTTAGAAAGCTTGACACAACTACAGAACCAGGTTCAATTGTTTGACAGCACGAACTATCTGAAATCATTTGGAGTAGGAGATGTATGGGTTGCAGTGGGTTGGAGCAGTGATGTTATTCCTGCTGCGAAGCGAATGTCTGACGTTGCAGTGGTGGTTCCCAAGTCAGGCAGTAGTCTATGGG ]
[-] EMBL CB675760 [ TGTTGAAGCTCAGGGGAAGAGACTGAAATTCAGTCNTGAGTTCAGGACAAACCTTGATGTGCTCTACTCCGAGATGTCACAATGTTTGGACAAGGGTCAACTTAAGCAAAAATCCGCAATGGCGGCTGATGTTGTTTCAATTGGGGACTCTTGGCTCGGGTATGCCATTCGTAAGGGATTGGTAGAACCTGTCAAGAACGCTGAAGAACAGGATTGGTTTCAGAGCCTAAGTAACAGATGGAAGGAACCGCAATGGTGAGGTAGATCCTAATGGCTCAATATGGGCGGTTCCATACAGATGGGGCACCGTGGTCATTGCTTACAAGAAAAACAAGTTCAAAAGGCATAATCTGAAACCGATACAGGACTGGGGGGATTTGTGGAGGCCTGAACTTGCCGGAAAAATTTCAATGGTGGATTCTCCAAGAGAAGTCATTGGTGCAGTCCTGAAGCATCTGGGATCCTCATACAACACTAATGACATGGAATCAGAAATCACTGGTGGTAGGGAAACAGTCTTAGAAAGCTTGACACAACTACAGAACCAGGTTCAATTGTTTGACAGCACGAACTATCTGAAATCATTTGGAGTAGGAGATGTATGGGTTGCAGTGGGTTGGAGCAGTGATGTTATTCCTGCTGCGAAGCGAATGTCTGACGTTGCAGTGGTGGTTCCCAAGTCAGGCAGTAGTCTATGGGCTGATCTATGGGCGATACCATCTGCAACCAAATTTCAGACTGATCGAATTGGCGGCAGAACTAGAGGCCCATCTCCACTTATCAACCAGTGGTTTGACTTCTGCCTGCAGAGTG CTAGAAGCTTACCCTTTCGGCAAGATGTCATCCCAGGAGCAGCG ]
[-] EMBL CB665448 [ AATGTTTGGACAAGGGTCAACTTAAGCAAAAATCCGCAATGGCGGCTGATGTTGTTTCAATCGGGGACTCTTGGCTCGGGTATGCCATTCGTAAGGGATTGGTAGAACCTGTCAAGAACGCTGAAGAACAGGATTGGTTTCAGAGCATAAGTAACAGATGGAAGGAACCGCAATGGTGAGGTAGATCCTAATGGCTCAATATGGGCGGTTCCATACAGATGGGGCACCGTGGTCATTGCTTACAAGAAAAACAAGTTCAAAAGGCATAATCTGAAACCGATACAGGACTGGGGGGATTTGTGGAGGCCTGAACTTGCCGGAAAAATTTCAATGGTGGATTCTCCAAGAGAAGTCATTGGTGCAGTCGTGAAGCATCTGGGATCTTCATACAACAGTAATGACATGGAATCAGAAATCACTGGTGGTAGGGAAACAGTATTAGAAAGCTTGACACAACTACAGAACCAGGTTCAATTGTTTGACAGCACGAACTATCTGAAATCATTTGGAGTAGGAGATGTATGGGTTGCAGTGGGTTGGAGCAGTGATGTTATTCCTGCTGGGAAGGGAATGTCTGACGTTTCAGTGGTGGTTCCCAAGTCAGGCAGTAGTGTATGGGCTGATCTATGGGCGATACCATCTGCAACCAAATTTCAGAGAGATCGAATTGGCGGCAGAACTAGAGGCCCATCTCCACTTATCAACCAGTGGTTTGACTTCTGCCTGCAGAGTGAGTAGAAGCTTACCCTTTCGTCAAGATGTCATCCCAGGAAAAGGGCCATC ]
[-] EMBL CB648138 [ GCAATGGCGGCTGATGTTGTTTCAATTGGGGACTCTTGGCTCGGGTATGCCATTCGTAAGGGATTGGTAGAACCTGTCAAGAACGCTGAAGAACAGGATTGGTTTCAGAGCCTAAGTAACAGATGGAAGGAACCGCAATGGTGAGGTAGATCCTAATGGCTCAATATGGGCGGTTCCATACAGATGGGGCACCGTGGTCATTGCTTACAAGAAAAACAAGTTCAAAAGGCATAATCTGAAACCGATACAGGACTGGGGGGATTTGTGGAGGCCTGAACTTGCCGGAAAAATTTCAATGGTGGATTCTCCAAGAGAAGTCATTGGTGCAGTCCTGAAGCATCTGGGATCCTCATACAACACTAATGACATGGAATCAGAAATCACTGGTGGTAGGGAAACAGTCTTAGAAAGCTTGACACAACTACAGAACCAGGTTCAATTGTTTGACAGCACGAACTATCTGAAATCATTTGGAGTAGGAGATGTATGGGTTGCAGTGGGTTGGAGCAGTGATGTTATTCCTGCTGCGAAGCGAATGTCTGACGTTGCAGTGGTGGTTCCCAAGTCAGGCAGTAGTCTATGGGCTGATCTATGGGCGATACCATCTGCAACCAAATTTCAGACTGATCGAATTGGCGGCAGAACTAGAGGCCCATCTCCACTTATCAACCAGTGGTTTGACTTCTGCCTGCAGAGTG GTAGAAGCTTACCCTTTCGGCAAGATGTCATCCCAGGAGaatgg ]
[+] EMBL CF195915 [ GGAGATGTATGGGTTGCAGTGGGTTGGAGCAGTGATGTTATTCCTGCTGCGAAGCGAATGTCTGACGTTGCAGTGGTGGTTCCCAAGTCAGGCAGTAGTCTATGGGCTGATCTATGGGCGATACCATCTGCAACCAAATTTCAGACTGATCGAATTGGCGGCAGAACTAGAGGCCCATCTCCACTTATCAACCAGTGGTTTGACTTCTGCCTGCAGAGTG CTAGAAGCTTACCCTTTCGGCAAGATGTCATCCCAGGAGCATCGCCACTATTCCTCGAGAAACCGGTGCCTGAAGTTCCTCAAGAACGAAACAAGAGAAAGCCAAAGCTGGNNNNNNATCTTGTCANNNNNNCACCTCNCNNNGAAATCCTNNNNNNATGTNNNNNTCTNN]
consensusID : consensus_13925#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1464 fasta sequence
[CCCTCGCATCCCCGTCGCGGCCCTCGTCCCCAACCACCTTCCCCGCCGCCCTCGCGCTTCCGGCATCCTCCTCCTCCTCGGCGACCGGAGACCGAGGCAGCTCGGCGTCGCCCTGCGGCGTCGGCCAAGACGCCACCAGGCCGAGACCGCGCCGCCCAGCCGCCGCGGCGGCGGAGGCTGCTGGGGGCGGTGGGCGGCACGCGCCGCGGCGGGGCTGGTGCTCCATCTGGCGGTATGCTCCGTCGCCTTGCTCTTCCCCACCTATGCGCGCGCCTGCGTGGGCGGCGCTCTCCCCCCGCCACCTCCTGCGGCGGCGATGGCGGCGGAGGAGGACGACGACGACGAGGAGTGGAAGGTCGCGCTGCAGCAGTGGAAGTCCAAGACGTATTCCCTCTCTGTTCCCCTGCGGGTCGTCGCGCTCCGTGGCTCCTTCCCTCCTGCGTGGATCAAGGATTTTGTTGAAGCTCAGGGGAAGAGACTGAAATTCAGTCCTGAGTTCAGGACAAACCTTGATGTGCTCTACTCCGAGATGTCACAATGTTTGGACAAGGGTCAACTTAAGCAAAAATCCGCAATGGCGGCTGATGTTGTTTCAATTGGGGACTCTTGGCTCGGGTATGCCATTCGTAAGGGATTGGTAGAACCTGTCAAGAACGCTGAAGAACAGGATTGGTTTCAGAGCCTAAGTAACAGATGGAAGGTTAGAGTCAAAAGTTGAAGCCATTTTTCTCTAAATTCTGATAGCCTTGGATGTTACGAAAGCTAATGCTTAGGTGTGGAGAACTTAATGCAGAGGGCTCTAAGCTCTGATATCTATTTTTCATTATAGTCTACCAGATTCATCTGTGCAGGAACCGCAATGGTGAGGTAGATCCTAATGGCTCAATATGGGCGGTTCCATACAGATGGGGCACCGTGGTCATTGCTTACAAGAAAAACAAGTTCAAAAGGCATAATCTGAAACCGATACAGGACTGGGGGGATTTGTGGAGGCCTGAACTTGCCGGAAAAATTTCAATGGTGGATTCTCCAAGAGAAGTCATTGGTGCAGTCCTGAAGCATCTGGGATCCTCATACAACACTAATGACATGGAATCAGAAATCACTGGTGGTAGGGAAACAGTCTTAGAAAGCTTGACACAACTACAGAACCAGGTTCAATTGTTTGACAGCACGAACTATCTGAAATCATTTGGAGTAGGAGATGTATGGGTTGCAGTGGGTTGGAGCAGTGATGTTATTCCTGCTGCGAAGCGAATGTCTGACGTTGCAGTGGTGGTTCCCAAGTCAGGCAGTAGTCTATGGGCTGATCTATGGGCGATACCATCTGCAACCAAATTTCAGACTGATCGAATTGGCGGCAGAACTAGAGGCCCATCTCCACTTATCAACCAGTGGTTTGACTTCTGCCTGCAGAGTGCTAGAAGCTTACCCTTTCGGCAAGATGTCATCCCAGGAGCATCG]
[+] EMBL CB619994 [CCCTCGCATCCCCGTCGCGGCCCTCGTCCCCAACCACCTTCCCCGCCGCCCTCGCGCTTCCGGCATCCTCCTCCTCCTCGGCGACCGGAGACCGAGGCAGCTCGGCGTCGCCCTGCGGCGTCGGCCAAGACGCCACCAGGCCGAGACCGCGCCGCCCAGCCGCCGCGGCGGCGGAGGCTGCTGGGGGCGGTGGGCGGCACGCGCCGCGGCGGGGCTGGTGCTCCATCTGGCGGTATGCTCCGTCGCCTTGCTCTTCCCCACCTATGCGCGCGCCTGCGTGGGCGGCGCTCTCCCCCCGCCACCTCCTGCGGCGGCGATGGCGGCGGAGGAGGACGACGACGACGAGGAGTGGAAGGTCGCGCTGCAGCAGTGGAAGTCCAAGACGTATTCCCTCTCTGTTCCCCTGCGGGTCGTCGCGCTCCGTGGCTCCTTCCCTCCTGCGTGGATCAAGGATTTTGTTGAAGCTCAGGGGAAGAGACTGAAATTCAGTCCTGAGTTCAGGACAAACCTTGATGTGCTCTACTCCGAGATGTCACAATGTTTGGACAAGGGTCAACTTAAGCAAAAATCCGCAATGGCGGCTGATGTTGTTTCAATTGGGGACTCTTGGCTCGGGTATGCCATTCGTAAGGGATTGGTAGAACCTGTCAAGAACGCTGAAGAACAGGATTGGTTTCAGAGCCTAAGTAACAGATGGAAGGTTAGAGTCAAAAGTTGAAGCCATTTTTCTCTAAATTCTGATAGCCTTGGATGTTACGAAAGCTAATGCTTAGGTGTGGAGAACTTAATGCAGAGGGC ]
[-] EMBL CB619995 [ GAAGAACAGGATTGGTTTCAGAGCCTAAGTAACAGATGGAAGGTTAGAGTCAAAAGTTGAAGCCATTTTTCTCTAAATTCTGATAGCCTTGGATGTTACGAAGGCTAATGCTTAGGTGTGGAGAACTTAATGCAGAGGGCTCTAAGCTCTGATATCTATTTTTCATTATAGTCTACCAGATTCATCTGTGCAGGAACCGCAATGGTGAGGTAGATCCTAATGGCTCAATATGGGCGGTTCCATACAGATGGGGCACCGTGGTCATTGCTTACAAGAAAAACAAGTTCAAAAGGCATAATCTGAAACCGATACAGGACTGGGGGGATTTGTGGAGGCCTGAACTTGCCGGAAAAATTTCAATGGTGGATTCTCCAAGAGAAGTCATTGGTGCAGTCCTGAAGCATCTGGGATCCTCATACAACACTAATGACATGGAATCAGAAATCACTGGTGGTAGGGAAACAGTCTTAGAAAGCTTGACACAACTACAGAACCAGGTTCAATTGTTTGACAGCACGAACTATCTGAAATCATTTGGAGTAGGAGATGTATGGGTTGCAGTGGGTTGGAGCAGTGATGTTATTCCTGCTGCGAAGCGAATGTCTGACGTTGCAGTGGTGGTTCCCAAGTCAGGCAGTAGTCTATGGGCTGATCTATGGGCGATACCATCTGCAACCAAATTTCAGACTGATCGAATTGGCGGCAGAACTAGAGGCCCATCTCCACTTATCAACCAGTGGTTTGACTTCTGCCTGCAGAGTGCTAGAAGCTTACCCTTTCGGCAAGATGTCATCCCAGGAGCATCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13925#0 ------------------------------------------------------------
consensus_13925#1 GAGGGGAAGCCCCTCCTCTTCCCCCACCCTCGCATCCCCGTCGCGGCCCTCGTCCCCAAC 60
consensus_13925#2 --------------------------CCCTCGCATCCCCGTCGCGGCCCTCGTCCCCAAC 34
consensus_13925#0 ---------------------------GGCATCCTCCTCCTCCTCGGCGACCGGAGACCG 33
consensus_13925#1 CACCTTCCCCGCCGCCCTCGCGCTTCCGGCATCCTCCTCCTCCTCGGCGACCGGAGACCG 120
consensus_13925#2 CACCTTCCCCGCCGCCCTCGCGCTTCCGGCATCCTCCTCCTCCTCGGCGACCGGAGACCG 94
*********************************
consensus_13925#0 AGGCAGCTCGGCGTCGCCCTGCGGCGTCGGCCAAGACGCTCCCAGGCCGAGACCGCGCCG 93
consensus_13925#1 AGGCAGCTCGGCGTCGCCCTGCGGCGTCGGCCAAGACGCCACCAGGCCGAGACCGCGCCG 180
consensus_13925#2 AGGCAGCTCGGCGTCGCCCTGCGGCGTCGGCCAAGACGCCACCAGGCCGAGACCGCGCCG 154
*************************************** *******************
consensus_13925#0 CCCAGCCGCCGCGGCGGCGGAGGCTGCTGGGGGCGGTGGGCGGCACGCGCCGCGGCGGGG 153
consensus_13925#1 CCCAGCCGCCGCGGCGGCGGAGGCTGCTGGGGGCGGTGGGCGGCACGCGCCGCGGCGGGG 240
consensus_13925#2 CCCAGCCGCCGCGGCGGCGGAGGCTGCTGGGGGCGGTGGGCGGCACGCGCCGCGGCGGGG 214
************************************************************
consensus_13925#0 CTGGTGCTCCATCTGGCGGTATGCTCCGTCGCCTTGCTCTTCCCCACCTATGCGCGCGCC 213
consensus_13925#1 CTGGTGCTCCATCTGGCGGTATGCTCCGTCGCCTTGCTCTTCCCCACCTATGCGCGCGCC 300
consensus_13925#2 CTGGTGCTCCATCTGGCGGTATGCTCCGTCGCCTTGCTCTTCCCCACCTATGCGCGCGCC 274
************************************************************
consensus_13925#0 TGCGTGGGCGGCGCTCTCCCCCCGCCACCTCCTGCGGCGGCGATGGCGGCGGAGGAGGAC 273
consensus_13925#1 TGCGTGGGCGGCGCTCTCCCCCCGCCACCTCCTGCGGCGGCGATGGCGGCGGAGGAGGAC 360
consensus_13925#2 TGCGTGGGCGGCGCTCTCCCCCCGCCACCTCCTGCGGCGGCGATGGCGGCGGAGGAGGAC 334
************************************************************
consensus_13925#0 GACGACGACGAGGAGTGGAAGGTCGCGCTGCAGCAGTGGAAGTCCAAGACGTATTCCCTC 333
consensus_13925#1 GACGACGACGAGGAGTGGAAGGTCGCGCTGCAGCAGTGGAAGTCCAAGACGTATTCCCTC 420
consensus_13925#2 GACGACGACGAGGAGTGGAAGGTCGCGCTGCAGCAGTGGAAGTCCAAGACGTATTCCCTC 394
************************************************************
consensus_13925#0 TCTGTTCCCCTGCGGGTCGTCGCGCTCCGTGGCTCCTTCCCTCCTGCGTGGATCAAGGAT 393
consensus_13925#1 TCTGTTCCCCTGCGGGTCGTCGCGCTCCGTGGCTCCTTCCCTCCTGCGTGGATCAAGGAT 480
consensus_13925#2 TCTGTTCCCCTGCGGGTCGTCGCGCTCCGTGGCTCCTTCCCTCCTGCGTGGATCAAGGAT 454
************************************************************
consensus_13925#0 TTTGTTGAAGCTCAGGGGAAGAGACTGAAATTCAGTCCTGAGTTCAGGACAAACCTTGAT 453
consensus_13925#1 TTTGTTGAAGCTCAGGGGAAGAGACTGAAATTCAGTCCTGAGTTCAGGACAAACCTTGAT 540
consensus_13925#2 TTTGTTGAAGCTCAGGGGAAGAGACTGAAATTCAGTCCTGAGTTCAGGACAAACCTTGAT 514
************************************************************
consensus_13925#0 GTGCTCTACTCCGAGATGTCACAATGTTTGGACAAGGGTCAACTTAAGCAAAAATCCGCA 513
consensus_13925#1 GTGCTCTACTCCGAGATGTCACAATGTTTGGACAAGGGTCAACTTAAGCAAAAATCCGCA 600
consensus_13925#2 GTGCTCTACTCCGAGATGTCACAATGTTTGGACAAGGGTCAACTTAAGCAAAAATCCGCA 574
************************************************************
consensus_13925#0 ATGGCGGCTGATGTTGTTTCAATTGGGGACTCTTGGCTCGGGTATGCCATTCGTAAGGGA 573
consensus_13925#1 ATGGCGGCTGATGTTGTTTCAATTGGGGACTCTTGGCTCGGGTATGCCATTCGTAAGGGA 660
consensus_13925#2 ATGGCGGCTGATGTTGTTTCAATTGGGGACTCTTGGCTCGGGTATGCCATTCGTAAGGGA 634
************************************************************
consensus_13925#0 TTGGTAGAACCTGTCAAGAACGCTGAAGAACAGGATTGGTTTCAGAGCCTAAGTAACAGA 633
consensus_13925#1 TTGGTAGAACCTGTCAAGAACGCTGAAGAACAGGATTGGTTTCAGAGCCTAAGTAACAGA 720
consensus_13925#2 TTGGTAGAACCTGTCAAGAACGCTGAAGAACAGGATTGGTTTCAGAGCCTAAGTAACAGA 694
************************************************************
consensus_13925#0 TGGAAGATT--------------------------------------------------- 642
consensus_13925#1 TGGAAG------------------------------------------------------ 726
consensus_13925#2 TGGAAGGTTAGAGTCAAAAGTTGAAGCCATTTTTCTCTAAATTCTGATAGCCTTGGATGT 754
******
consensus_13925#0 ------------------------------------------------------------
consensus_13925#1 ------------------------------------------------------------
consensus_13925#2 TACGAAAGCTAATGCTTAGGTGTGGAGAACTTAATGCAGAGGGCTCTAAGCTCTGATATC 814
consensus_13925#0 --------------------------CATCTGTGCAGGAACCGCAATGGTGAGGTAGATC 676
consensus_13925#1 -------------------------------------GAACCGCAATGGTGAGGTAGATC 749
consensus_13925#2 TATTTTTCATTATAGTCTACCAGATTCATCTGTGCAGGAACCGCAATGGTGAGGTAGATC 874
***********************
consensus_13925#0 CTAATGGCTCAATATGGGCGGTTCCATACAGATGGGGCACCGTGGTCATTGCTTACAAGA 736
consensus_13925#1 CTAATGGCTCAATATGGGCGGTTCCATACAGATGGGGCACCGTGGTCATTGCTTACAAGA 809
consensus_13925#2 CTAATGGCTCAATATGGGCGGTTCCATACAGATGGGGCACCGTGGTCATTGCTTACAAGA 934
************************************************************
consensus_13925#0 AAAACAAGTTCAAAAGGCATAATCTGAAACCGATACAGGACTGGGGGGATTTGTGGAGGC 796
consensus_13925#1 AAAACAAGTTCAAAAGGCATAATCTGAAACCGATACAGGACTGGGGGGATTTGTGGAGGC 869
consensus_13925#2 AAAACAAGTTCAAAAGGCATAATCTGAAACCGATACAGGACTGGGGGGATTTGTGGAGGC 994
************************************************************
consensus_13925#0 CTGAACTTGCCGGAAAAATTTCAATGGTGGATTCTCCAAGAGAAGTCATTGGTGCAGTCC 856
consensus_13925#1 CTGAACTTGCCGGAAAAATTTCAATGGTGGATTCTCCAAGAGAAGTCATTGGTGCAGTCC 929
consensus_13925#2 CTGAACTTGCCGGAAAAATTTCAATGGTGGATTCTCCAAGAGAAGTCATTGGTGCAGTCC 1054
************************************************************
consensus_13925#0 TGAAGCATCTGGGATCCTCATACAACACTAATGACATGGAATCAGAAATCACTGGTGGTA 916
consensus_13925#1 TGAAGCATCTGGGATCCTCATACAACACTAATGACATGGAATCAGAAATCACTGGTGGTA 989
consensus_13925#2 TGAAGCATCTGGGATCCTCATACAACACTAATGACATGGAATCAGAAATCACTGGTGGTA 1114
************************************************************
consensus_13925#0 GGGAAACAGTCTTAGAAAGCTTGACACAACTACAGAACCAGGTTCAATTGTTTGACAGCA 976
consensus_13925#1 GGGAAACAGTCTTAGAAAGCTTGACACAACTACAGAACCAGGTTCAATTGTTTGACAGCA 1049
consensus_13925#2 GGGAAACAGTCTTAGAAAGCTTGACACAACTACAGAACCAGGTTCAATTGTTTGACAGCA 1174
************************************************************
consensus_13925#0 CGAACTATCTGAAATCATTTGGAGTAGGAGATGTATGGGTTGCAGTGGGTTGGAGCAGTG 1036
consensus_13925#1 CGAACTATCTGAAATCATTTGGAGTAGGAGATGTATGGGTTGCAGTGGGTTGGAGCAGTG 1109
consensus_13925#2 CGAACTATCTGAAATCATTTGGAGTAGGAGATGTATGGGTTGCAGTGGGTTGGAGCAGTG 1234
************************************************************
consensus_13925#0 ATGTTATTCCTGCTGCGAAGCGAATGTCTGACGTTGCAGTGGTGGTTCCCAAGTCAGGCA 1096
consensus_13925#1 ATGTTATTCCTGCTGCGAAGCGAATGTCTGACGTTGCAGTGGTGGTTCCCAAGTCAGGCA 1169
consensus_13925#2 ATGTTATTCCTGCTGCGAAGCGAATGTCTGACGTTGCAGTGGTGGTTCCCAAGTCAGGCA 1294
************************************************************
consensus_13925#0 GTAGTCTATGGGCTGATCTATGGGCGATACCATCTGCAACCAAATTTCAGACTGATCGAA 1156
consensus_13925#1 GTAGTCTATGGGCTGATCTATGGGCGATACCATCTGCAACCAAATTTCAGACTGATCGAA 1229
consensus_13925#2 GTAGTCTATGGGCTGATCTATGGGCGATACCATCTGCAACCAAATTTCAGACTGATCGAA 1354
************************************************************
consensus_13925#0 TTGGCGGCAGAACTAGAGGCCCATCTCCACTTATCAACCAGTGGTTTGACTTCTGCCTGC 1216
consensus_13925#1 TTGGCGGCAGAACTAGAGGCCCATCTCCACTTATCAACCAGTGGTTTGACTTCTGCCTGC 1289
consensus_13925#2 TTGGCGGCAGAACTAGAGGCCCATCTCCACTTATCAACCAGTGGTTTGACTTCTGCCTGC 1414
************************************************************
consensus_13925#0 AGAGTGCTAGAAGCTTACCCTTTCGGCAAGATGTCATCCCAGGAGCATCGCCACTATTCC 1276
consensus_13925#1 AGAGTGCTAGAAGCTTACCCTTTCGGCAAGATGTCATCCCAGGAGCAGCGCCATCATTCC 1349
consensus_13925#2 AGAGTGCTAGAAGCTTACCCTTTCGGCAAGATGTCATCCCAGGAGCATCG---------- 1464
*********************************************** **
consensus_13925#0 TCGAGAAACCGGTGCCTGAAGTTCCTCAAGAACGAAACAAGAGAAAGCCAAAGCTGGAGA 1336
consensus_13925#1 TCGAGAAACCGGTGCCTGAAGTTCCTCAAGAACGAAACAAGAGAAAGCCAAAGCTGGNNN 1409
consensus_13925#2 ------------------------------------------------------------
consensus_13925#0 CGAATCTTGTCAGAGGAGCACCTCCCCTTGAAATCCTGGAAAAATGTGAGTTTCTAGAGC 1396
consensus_13925#1 NNNATCTTGTCANNNNNNCACCTCNCNNNGAAATCCTNNNNNNATGTNNNNNTCTNN--- 1466
consensus_13925#2 ------------------------------------------------------------
consensus_13925#0 CTCTATCAGAAAAGGCGCTGGACGATTACCAATGGCTGATAACGAGAATGCAGAGACCAA 1456
consensus_13925#1 ------------------------------------------------------------
consensus_13925#2 ------------------------------------------------------------
consensus_13925#0 ATCGTGGTCTGTTTGGAAATTTGTTGCAAAATATATCGAGTGTACTGAATTTCAAATCAA 1516
consensus_13925#1 ------------------------------------------------------------
consensus_13925#2 ------------------------------------------------------------
consensus_13925#0 GAGTTTAAGAATTTCTGTGCAAAAAAAACCCTTAAAAGGAAA 1558
consensus_13925#1 ------------------------------------------
consensus_13925#2 ------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||