|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13974#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 2145 fasta sequence
[CCCTCCCAGTTTTTTTCCGCCTCTCCGCCTCTCGCCTCTCCCCACCCCACCCCCCCGCGACGACGGGGCCCCGAAGCTTCCAGAAGCTTCCAGGGTCCTCCCCTCCCAGATCGCCCCGCCCTCCGGAGCTCAGCGGGGGCGGCCGCGGGTGGCGGAGGAGGAGGAGGAGGAGGAGGAGCCGGGGTGGGGGCGGCTAGGGTTAGGGATCCGGGGGTGGTGGGGTGGGGGTGCTGCGGCAGCGGGTGGGTTCGAGAAGGAGGATGCATATGATGCGGCGGCTCAAGAGCATCGCCTCCGGCCGCTCGTCCGTCTCCGATCCGGGTGGTG-ATTCTGGCACCAAAAGACCAAAATTCGATCAGGATGGAGCAGGAGATATAGTCATTGAGCCACATCTAACTGATGACAAACCTATGCGCGTAGACCAAGAATCATCTTCATCTCATAGAGATGCTGAGGCAAGCACATCTACTAGTAAGAATCCTGGTAGAACTGAAGAAGCAGGTGCGGATATTCTTCCAAAAGAAATGAATGAGATGACAATAAGTGATGATAAAGTTGATGGCCATAATGATAAGGAATCTGAAGGTGTTATTGTTAATGCAAATGGAACAGAAACAGGTCAGATTATTGTGACAT-CAATTGGAGGTCAAAATGGGAAGCCAAAGCAGAAGGTATCATACATGGCAGAACGTGTAGTTGGTACTGGTTCATTTGGTGTAGTTTTTCAGGCCAAGTGCTTGGAAACTGGAGAGACTGTTGCCATTAAGAAGGTTCTGCAAGATAAAAGATATAAGAACAGAGAGCTCCAAACAATGCAACTGCTTGACCATCCTAATGTGGTCCAGCTAAAGCATCACTTCTTTTCGACGACTGAGAGGGGTGAAGTTTACCTCAACCTTGTACTTGTATATGTCTCAGAGACAGTTTATCGTGTTGCTAAATACTACAATCGGATGAACCAGCGTGTGCCCATATTGCATGTTAAGCTGTATGCATATCAGATGTGCCGTGCCCTTGCATATATCCATCGTGTTGTTGGTGTCTGCCATCGAGATATTAAACCTCAAAATCTACTGGTCAATCCTCATACACATCAACTGAAGCTTTGTGATTTTGGAAGTGCTAAGAAATTGGTTCCTGGTGAACCTAACATATCATACATTTGCTCGCGGTATTATAGGGCTCCTGAACTAATATTTGGAGCTACAGAGTATACCACAGCAATTGATATCTGGTCTGTTGGTTGTGTACTAGCTGAGCTTCTGATTGGTCAGCCTCTGTTCCCTGGAGAAAGTGGTGTTGATCAACTGGTGGAAATAATAAAGATTTTGGGTACACCAACTAGAGAAGAAATCAGGTGCATGAATCCAAACTATTCTGAATTCAAATTCCCTCAGATAAAAGCTCATCCATGGCACAAGCTTTTTGGTAAGCGCATGCCACCTGAAGCTGTTGATCTTGTGTCAAGGTTGCTGCAGTACTCGCCAAATTTGCGTTGCACAGCTGTTGATGCTTGTG---CTCATCCATTCTTTGATGAACTGCGGGATCCCAAGACCTGCTTGTCAAATGGACGATCATTACCACCCTTGTTCGACTTCTCAGCTGCTGAATTGGAAGGCCTTCCTGTTGAGCTAGTCCACCGAATCATTCCTGAACATATGAGGAAGTGAAACGGAATGGCAGGAAAACACAATTTCGCTGTTAGAACAGCGGATAGGTGTGAGTGAGATGGTT-GATGC-AAACAT-CCAT-AACTTATGGAT-GGATCAGGAGTAGACTAGATTCACTGCCTTG-CTAGATGTGGAAAGAGGGATGCTATAGAAGTTCCTCATCATCACTTCACATAAAGAGCGAGGCAGTGGCTCATTCTGATGCAATTCCAAGAGGTAATGAGCAACTGAGATTGGCACGGCAACTCGCACATTTTCATCATGTGCCACCAGAGACGTTTATCTACTAGGCTGCTGTTGTATAATCAGGTACATGCTGAGTTTGCAGTTGTTTGTAGACACTTGTTTCCCTGAACAAGCGATGAGAGAAATCCAGA-TTCCAAAGTGCTTGCTTTG-CTATCATG-AAAGCCTGCCCGGAACATGTCAATTTTGATTAGTGCACGCAATGGCCTTTCCTTTATGTTTCAGAAGTCTAATC]
[+] EMBL CB663265 [CCCTCCCAGTTTTTTTCCGCCTCTCCGCCTCTCGCCTCTCCCCACCCCACCCCCCCGCGACGACGGGGCCCCGAAGCTTCCAGAAGCTTCCAGGGTCCTCCCCTCCCAGATCGCCCCGCCCTCCGGAGCTCAGCGGGGGCGGCCGCGGGTGGCGGAGGAGGAGGAGGAGGAGGAGGAGCCGGGGTGGGGGCGGCTAGGGTTAGGGATCCGGGGGTGGTG ]
[+] EMBL AK072390 [ CTCTCGCCTCTCCCCACCCCACCCCCCCGCGACGACGGGGCCCCGAAGCTTCCAGAAGCTTCCAGGGTCCTCCCCTCCCAGATCGCCCCGCCCTCCGGAGCTCAGCGGGGGCGGCCGCGGGTGGCGGAGGAGGAGGAGGAGGAGGAGGAGCCGGGGTGGGGGCGGCTAGGGTTAGGGATCCGGGGGTGGTGGGGTGGGGGTGCTGCGGCAGCGGGTGGGTTCGAGAAGGAGGATGCATATGATGCGGCGGCTCAAGAGCATCGCCTCCGGCCGCTCGTCCGTCTCCGATCCGGGTGGTG ATTCTGGCACCAAAAGACCAAAATTCGATCAGGATGGAGCAGGAGATATAGTCATTGAGCCACATCTAACTGATGACAAACCTATGCGCGTAGACCAAGAATCATCTTCATCTCATAGAGATGCTGAGGCAAGCACATCTACTAGTAAGAATCCTGGTAGAACTGAAGAAGCAGGTGCGGATATTCTTCCAAAAGAAATGAATGAGATGACAATAAGTGATGATAAAGTTGATGGCCATAATGATAAGGAATCTGAAGGTGTTATTGTTAATGCAAATGGAACAGAAACAGGTCAGATTATTGTGACAT CAATTGGAGGTCAAAATGGGAAGCCAAAGCAGAAGGTATCATACATGGCAGAACGTGTAGTTGGTACTGGTTCATTTGGTGTAGTTTTTCAGGCCAAGTGCTTGGAAACTGGAGAGACTGTTGCCATTAAGAAGGTTCTGCAAGATAAAAGATATAAGAACAGAGAGCTCCAAACAATGCAACTGCTTGACCATCCTAATGTGGTCCAGCTAAAGCATCACTTCTTTTCGACGACTGAGAGGGGTGAAGTTTACCTCAACCTTGTACTTGTATATGTCTCAGAGACAGTTTATCGTGTTGCTAAATACTACAATCGGATGAACCAGCGTGTGCCCATATTGCATGTTAAGCTGTATGCATATCAGATGTGCCGTGCCCTTGCATATATCCATCGTGTTGTTGGTGTCTGCCATCGAGATATTAAACCTCAAAATCTACTGGTCAATCCTCATACACATCAACTGAAGCTTTGTGATTTTGGAAGTGCTAAGAAATTGGTTCCTGGTGAACCTAACATATCATACATTTGCTCGCGGTATTATAGGGCTCCTGAACTAATATTTGGAGCTACAGAGTATACCACAGCAATTGATATCTGGTCTGTTGGTTGTGTACTAGCTGAGCTTCTGATTGGTCAGCCTCTGTTCCCTGGAGAAAGTGGTGTTGATCAACTGGTGGAAATAATAAAGATTTTGGGTACACCAACTAGAGAAGAAATCAGGTGCATGAATCCAAACTATTCTGAATTCAAATTCCCTCAGATAAAAGCTCATCCATGGCACAAGCTTTTTGGTAAGCGCATGCCACCTGAAGCTGTTGATCTTGTGTCAAGGTTGCTGCAGTACTCGCCAAATTTGCGTTGCACAGCTGTTGATGCTTGTG CTCATCCATTCTTTGATGAACTGCGGGATCCCAAGACCTGCTTGTCAAATGGACGATCATTACCACCCTTGTTCGACTTCTCAGCTGCTGAATTGGAAGGCCTTCCTGTTGAGCTAGTCCACCGAATCATTCCTGAACATATGAGGAAGTGAAACGGAATGGCAGGAAAACACAATTTCGCTGTTAGAACAGCGGATAGGTGTGAGTGAGATGGTT GATGC AAACAT CCGT AACTTATGGAT GGATCAGGAGTAGACTAGATTCACTGCCTTG CTAGATGTGGAAAGAGGGATGCTATAGAAGTTCCTCATCATCACTTCACATAAAGAGTGAGGCAGTGGCTCATTCTGATGCAATTCCAAGAGGTAATGAGCAACTGAGATTGGCACGGCAACTCGCACATTTTCATCATGTGCCACCAGAGACGTTTATCTACTAGGCTGCTGTTGTATAATCAGGTACATGCTGAGTTTGCAGTTGTTTGTAGACACTTGTTTCCCTGAACAAGCGATGAGAGAAATCCAGA TTCCAAAGTGCTTGCTTTG CTATCATG AAAGCCTGCCCGGAACATGTCAATTTTGATTAGTGCACGCAATGGCCTTTCCTTTATGTTTCAGAAGTCTAATC]
[+] EMBL CF309558 [ tatggactGAAGGAGTATGCATATGATGCGGCGGCTCAAGAGCATCGCCTCCGGCCGCTCGTCCGTCTCCGATCCGGGTGGTG ATTCTGGCACCAAAAGACCAAAATTCGATCAGGATGGAGCAGGAGATATAGTCATTGAGCCACATCTAACTGATGACAAACCTATGCGCGTAGACCAAGAATCATCTTCATCTCATAGAGATGCTGAGGCAAGCACATCTACTAGTAAGAATCCTGGTAGAACTGAAGAAGCAGGTGCGGATATTCTTCCAAAAGAAATGAATGAGATGACAATAAGTGATGATAAAGTTGATGGCCATAATGATAAGGAATCTGAAGGTGTTATTGTTAATGCAAATGGAACAGAAACAGGTCAGATTATTGTGACATNCAATTGGAGGTCAAAATAGGAAGCCAAAGCAGAAGGTATCATACAT ]
[+] EMBL CB676689 [ GCGGCTCAAGAGCATCGCCTCCGGCCGCTCGGCCGTCTCCGATCCGGGTGGTGCCTCCTGGCACCAAAAGACCATTTTTCTATCAGGATGGAGCAGGAGATATAGTCATTGAGCCACATCTAACTGATGACAAACCTATGCGCGTACACCAAGAATCATCTTCATCTCATAGAGATGCTGAGGCAAGCACATCTACTAGTAAGAATCCTGGTAGAACTGAAGAAGCAGGTGCGGATATTCTTCCAAAAGAAATGAATGAGATGACAATAAGTGATGATAAAGCTGATGGCCATAATGATATTTAATCTGAAGGTGTTATTGTTAATGCAAATGGAACAGAAACAGGTCACATTATTGTGACAT CAATTGGAGGTCAAAATGGGAAGCCAAAGCAGAACGTATCATACATGGCAGAACGTGTAGTTGGGACTGGTTCATTTGGTGTAGTTTTTCAAGCCAAGTGCTTGGAAACTGGAGAGACTGTTGCCATTAAGAAGGTTCTGCAAGATAAAAGATATAAGAACAGAGAGCTCCAAACAATGCAACTGCTTGACCATCCTAATGTGGTCCAGCTAAAGCATCACTTCTTTTCGACGACTGAGAGGGGTGAAGTTTACCTCAACCTTGTACTTGAATATGTCTCAGAGACAGTTTATCGAGTTGCTAAATACT ]
[+] EMBL CA923291 [ TTTGGTGTAGTTTTTCAGGCCAAGTGCTTGGAAACTGGAGAGACTGTTGCCATTAAGAAGGTTCTGCAAGATAAAAGATATAAGAACAGAGAGCTCCAAACAATGCAGCTGCTTGACCATCCTAATGTGGTCCGGCTAAAGCATCACTTCTTTTCGACGACTGAGAGGGGTGAAGTTTACC ]
[+] EMBL OSC106241 [ CATCGAGATATTAAACCTCAAAATCTACTGGTCAATCCTCATACACATCAACTGAAGCTTTGTGATTTTGGAAGTGCTAAGAAATTGGTTCCTGGTGAACCTAACATATCATACATTTGCTCGCGGTATTATAGGGCTCCTGAACTAATATTTGGAGCTACAGAGTATACCACAGCAATTGATATCTGGTCTGTTGGTTGTGTACTAGCTGAGCTTCTGATTGGTCAGCCTCTGTTCCCTGGAGAAAGTGGTGTTGATCAACTGGTGGAAATAATAAAGATTTTGGGTACACCAACTAGAGAAGAAATCAGGTGCATGAATCCAAACTATTCTGAATTCAAATTCCCTCAGATAAAAGCTCATCCATGGCACAAGCTTT ]
[+] EMBL OSSTTPK [ CATCGAGATATTAAACCTCAAAATCTACTGGTCAATCCTCATACACATCAACTGAAGCTTTGTGATTTTGGAAGTGCTAAGAAATTGGTTCCTGGTGAACCTAACATATCATACATTTGCTCGCGGTATTATAGGGCTCCTGAACTAATATTTGGAGCTACAGAGTATACCACAGCAATTGATATCTGGTCTGTTGGTTGTGTACTAGCTGAGCTTCTGATTGGTCAGCCTCTGTTCCCTGGAGAAAGTGGTGTTGATCAACTGGTGGAAATAATAAAGATTTTGGGTACACCAACTAGAGAAGAAATCAGGTGCATGAATCCAAACTATTCTGAATTCAAATTCCCTCAGATAAAAGCTCATCCATGGCACAAGCTTTTTGGTAAGCGCATGCCACCTGAAGCTGTTGATCTGGTGTCAAGGTTGCTGCAGTACTCGCCAAATTTGCGTTGCACAGCTGTTGATGCTTGTGCCCCTCATCCATTCTTTGATGAACTGCGGGATCCCAAGACCTGCTTGTCAAATGGACGATCATTACCACCCTTGTTCGACTTCTCAGCTGCTGAATTGGAAGGCCTTCCTGTTGAGCTAGTCCACCGAATCATTCCTGAACATATGAGGAAGTGAAACGGAATGGCAGGAAAACACAATTTCGCTGTTAGAACAGCGGATAGGTGTGAGTGAGATGGTT GATGC AAACAT CCAT AACTTATGGAT GGATCAGGAGTAGACTAGATTCACTGCCTTG CTAGATGTGGAAAGAGGGATGCTATAGAAGTTCCTCATCATCACTTCACATAAAGAGCGAGGCAGTGGCTCATTCTGATGCAATTCCAAGAGGTAATGAGCAACTGAGATTGGCACGGCAACTCGCACATTTTCATCATGTGCCACCAGAGACGTTTATCTACTAGGCTGCTGTTGTATAATCAGGTACATGCTGAGTTTGCAGTTGTTTGTAGACACTTGTTTCCCTGAACAAGCGATGAGAGAAATCCAGA TTCCAAAGTGCTTGCTTTG CTATCAAA AAAaaa ]
[+] EMBL CA764975 [ GGCTCCTGAACTGATATTTGGAGCT CAGAGACTACCNCAGCAATTGATATCTGNTCTGNTGGNTGTGTACTAGCTGNGCTTCTGATTGGTCGGCCTCTGTTCCCTGGAGAAAGTGGAGTTGATCAACTGGTGGAAATAATAAAGATTTTGGGTACACCAACTAGAGAAGAAATCAGGTGCATGAATCCAAACTATTCTGAATTCAAATTCCCTCAGATAAAAGCTCATCCATGGCACAAGCCTTTTGGTAAGCGCATGCCACCTGAAGCTGNTGATCTTGNGTCAAGGNTGCTGCAGTACTCGNCAAATTTGCGTTGCACAGNTGTTGATGCTTGTG CTCATCCATTCTTTGATGAACTGCGGGATCCCAAGACCTGCTTGTCAAATGGACGATCATTACCACCCTTGTTCGACTTCTCANCTGCTGAATTGGAAGGCCTTCCTGTTGAGCTAGTCCACCGAATCATTCCTGAACATATGAGGAAGTGAAATGGAATGNNAGGAAAACACAANTTCGCTGCTAGAACAGCGGATAGGNGTGAGTGAGATGNTT GANGC AAACAT CCAT AACTTATGNAT GNATCANGAGNAGACTAGATNCACTGCCTTG CTAGATGTGCAAAGAGGNATGCTATAGAAGTTCCTCATCATCACTTNACATAAAGAGCGAGGCANTGGCTCATTCTGATGCAATTCCAAGAGGTAATGAGCAACTGAGATTGGCACGGCAACTCNCACATTTTCATCATGTGCCACCAGAGACGNTCATCTACTANGCTGCTGT ]
[+] EMBL CB096369 [ TGGTGTTGATCAACTGGTGGAAATAATAAAGATTTTGGGTACACCAACTAGAGAAGAAATCAGGTGCATGAATCCAAACTATTCTGAATTCAAATTCCCTCAGATAAAAGCTCATCCATGGCACAAGCTTTTTGGTAAGCGCATGCCACCTGAAGCTGTTGATCTTGTGTCAAGGTTGCTGCAGTACTCGCCAAATTTGCGTTGCACAGCTGTTGATGCTTGTG CTCATCCATTCTTTGATGAACTGCGGGATCCCAAGACCTGCTTGTCAAATGGACGATCATTACCACCCTTGTTCGACTTCTCAGCTGCTGAATTGGAAGGCCTTCCTGTTGAGCTAGTCCACCGAATCATTCCTGAACATATGAGGAAGTGAAATGGAATGGCAGGAAAACACAATTTCGCTGTTAGAACAGCGGATAGGTGTGAGTGAGATGGTT GATGC AAACAT CCAC AACTTATGGAT GGATCAGGAGTAGACTAGATTCACTGCCTTG CTAGATGTGGAAAGAGGGATGCTATAGAAGTTCCTCATCATCACTTCACATAAAGAGCGAGGCAGTGGCTCATTCTGATGCAATTCCAAGAGGTAATGAGCAACTGAGATTGGCACGGCAACTCGCACATTTTCATCATGTGCCACCAGAGACGNTTATCTACTANGCTGCTGNTGTATAATCAGGTACATGATGAGTTTGCAGTTGNTTGNANACACTTGGTTNCCTGAACAAGCGATGAGAGAAATNCAGATTTCCGAAGNGCTTGCTTTG CTATCATGNAAAGCCTGGCCGGNACATGTCAATTTTGATTAGNGC ]
[-] EMBL CB663266 [ TTTTGGGTACACCAACTAGAGAAGAAATCAGGTGCATGAATCCAAACTATTCTGAATTCAAATTCCCTCAGATAAAAGCTCATCCATGGCACAAGCTTTTTGGTAAGCGCATGCCACCTGAAGCTGTTGATCTTGTGTCAAGGTTGCTGCAGTACTCGCCAAATTTGCGTTGCACAGCTGTTGATGCTTGTG CTCATCCATTCTTTGATGAACTGCGGGATCCCAAGACCTGCTTGTCAAATGGACGATCATTACCACCCTTGTTCGACTTCTCAGCTGCTGAATTGGAAGGCCTTCCTGTTGAGCTAGTCCACCGAATCATTCCTGAACATATGAGGAAGTGAAACGGAATGGCAGGAAAACACAATTTCGCTGTTAGAACAGCGGATAGGTGTGAGTGAGATGGTT GATGC AAACAT CCAT AACTTATGGAT GGATCAGGAGTAGACTAGATTCACTGCCTTG CTAGATGTGGAAAGAGGGATGCTATAGAAGTTCCTCATCATCACTTCACATAAAGAGCGAGGCAGTGGCTCATTCTGATGCAATTCCAAGAGGTAATGAGCAACTGAGATTGGCACGGCAACTCGCACATTTTCATCATGTGCCACCAGAGACGTTTATCTACTAGGCTGCTGTTGTATAATCAGGTACATGCTGAGTTTGCAGTTGTTTGTAGACACTTGTTTCCCTGAACAAGCGATGAGAGAAAT ]
[-] EMBL CB676690 [ AAATTTGCGTGGCACAGCTGTTGATGCTTGTG CTCATCCATTCTTTGATGAACTGCGGGATCCCAAGACTTGCTTGTCAAATGGACGATCATTACCACCCTTGTTCGACTTCTCAGCTGCTGAATTGGAAGGCCTTCCTGTTGAGCTAGTCCACCGAATCATTCCTGAACATATGAGGAAGTGAAACGGAATGGCAGGAAAACACAATTTCGCTGTTAGAACAGCGGATAGGTGTGAGTGAGATGGTT GATGC AAACAT CCAT AACTTATGGAT GGATCAGGAGTAGACTAGATTCACTGCCTTG CTAGATGTGGAAAGAGGGATGCTATAGAAGTTCCTCATCATCACTTCACATAAAGAGCGAGGCAGTGGCTCATTCTGATGCAATTCCAAGAGGTAATGAGCAACTGAGATTGGCACGGCAACTCGCACATTTTCATCATGTGCCACCAGAGACGTTTATCTACTAGGCTGCTGTTGTATAATCAGGTACATGCTGAGTGGGCAATTNTTTGTAAACA ]
[-] EMBL CF309559 [ TTGATGAACTGCGGGATCCCAAGACCTGCTTGTCAAATGGACGATCATTACCACCCTTGTTCGACTTCTCAGCTGCTGAATTGGAAGGCCTTCCTGTTGAGCTAGTCCACCGAATCATTCCTGAACATATGAGGAAGTGAAACGGAGTGGCAGGAAAACACAATTTCGCTGTTAGAACAGCGGATAGGTGTGAGTGAGATGGTT GATGC AAACAT CCAT AACTTATGGAT GGATCAGGAGTAGACTAGATTCACTGCCTTG CTAGATGTGGAAAGAGGGATGCTATAGAAGTTCCTCATCATCACTTCACATAAAGAGCGAGGCAGTGGCTCATTCTGATGCAATTCCAAGAGGTAATGAGCAACTGAGATTGGCACGGCAACTCGCACATTTTCATCATGTGCCACCAGAGACGTTTATCTACTAGGCTGCTGTTGTATAATCAGGTACATGCTGAGTTTGCAGTTGTTTGTAGACACTTGTTTCCCTGAACAAGCGATGGGAGAAATCCAGA TTCCAAAGTGCTTGCTTTG CTATCAAA AAAaaaa ]
[+] EMBL C22345 [ TGANATGGTTNGATGCAAAACATCCCATAAACTTATGGATGGGATCAGCAGTAGACTAGATTCACTGCCTTGCCTAGATGTGGAAAGAGGGATGCTATAGAAGTTCCTCATCATCACTTCACATAAAGAGCGAGGCAGTGGCTCATTCTGATGCAATTCCAAGAGGTAATGAGCAACTGAGATTGGCACGGCAACTCGCACATTTTCATCATGTGCCACCAGAGACGTTTATCTACTAGGCTGCTGTTGTATAATCAGGTACATGCTGAGTTTGCAGTTGTTTGTAGACACTTGTTTCCCTGAACAAGCGATGAGAGAAATCCAGA TTCCAAAGTGCTTGCTTTG CTATCAAA AAAaaa ]
[-] EMBL AA750339 [ AAC CGC CA TTCATCATGTGCCACCAGAG CGTTTATCTACTAGGCTGCTGTTGTATAATCAGGTACATGCTGAGTTTGCAGTTGTTTGTAGACACTTGTTTCCCTGAACAAGCGATGAGAGAAATCCAGA TTCCAAAGTGCTTGCTTTGTCTATNATG AAAGCCTGCCCG ]
clustalw multiple alignements is not computed in this case |
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||