|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14046#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1193 fasta sequence
[GTCATCAACGATTGCTAGATAGCCAAAGCTCTTTTGTTGTTTCGGTGCTCTTCGGCTTCGTCGTCGGCGAGGGAGGGTTTGGTTTGGGAAGTTGGGGGGGATGGATCGGTCGATGGAGACGGTGGAGGAGGAGGTGGAGGAGTACAGCTGGAGGGAGGTGCTGCTGCCGCGGCTCGTCCCGGTGGTGTCGGACGCGGCGCCGGAGCTGGAGCGGGAGACGGGGGAGCGCCGCCGGGGCAGGGAGCTCCTCGTCGCCGTCGACTTCGGGCCCAACTCCAAGCACGCCTTCGACTGGGCGCTCGTGCACTTCGCCCGCATGGCCGACACGCTCCACCTCGTCCACGCCGTCTCCAGTTGAGCACCCTCCCCATCACCATCCCCATCCCCGTCCGTTCACCTCCGAACTTACCTAGCCTTGTGGAGCATATATGCATCTAGTACTTTAATTAGCTTCCGGAATTTTAAATCATATACTAGGTTGATGATTAAGTAATTTATTGTAATTGCTCAAGCGAATTTAGCAACTTGATTTGTTTAGTGCACACAACCCAGTCGTCGTGTATGGATTAATTAATCAGAAGTATCTGCATCTCATTTGTCATTTGGCTGCTAGCTCACTGCACCTTTTTTTTTTTTTCAGATTTGAATCACCATACAAATATACATAGAATGTGATAGCAGCAGCCCAGGCAGCGAGCCTATATAATTTTCAGTAGGCTAGTTAATTGTGATACTTGTAACCCTTTTTATCTTCTATCTTAATAACATTCGGATTGGCCTTTCTTCGGTCATCCTAGCAAGATACAATGCAGCATCACCGTGTTGTGTCATTGTTTACTGTTGGATGAACCTATATAGAGGCCTGACTTCCAGGAGGTCAAATTTATGATGGACTTAGAAGTGGACTTCCGTTTGATGATCTAGTTCATTAGAGAAGTGAAAGCAGTACCCCCAGCTCAACAGCTTAATGTCGATCTTGTAACCGCTTTGTAACCTCCTTTTCTTAATAAGATTTGGTCAGCCTAATCCTTCGGCTGACCCGTTAAAAAAGGTTAAAACAGTACTGTAGTTTGAGAGACTAAGGGAATAGTAGCACTTGGGTATTGTAACTTTCTAAGTTTGAAGATTGTGGGTTGTTTTCCTGGTGTATTATCATAGAACCAGTTCTATAATCGAGGTACATCTGGTAAATT]
[+] EMBL AK072661 [GTCATCAACGATTGCTAGATAGCCAAAGCTCTTTTGTTGTTTCGGTGCTCTTCGGCTTCGTCGTCGGCGAGGGAGGGTTTGGTTTGGGAAGTTGGGGGGGATGGATCGGTCGATGGAGACGGTGGAGGAGGAGGTGGAGGAGTACAGCTGGAGGGAGGTGCTGCTGCCGCGGCTCGTCCCGGTGGTGTCGGACGCGGCGCCGGAGCTGGAGCGGGAGACGGGGGAGCGCCGCCGGGGCAGGGAGCTCCTCGTCGCCGTCGACTTCGGGCCCAACTCCAAGCACGCCTTCGACTGGGCGCTCGTGCACTTCGCCCGCATGGCCGACACGCTCCACCTCGTCCACGCCGTCTCCAGTTGAGCACCCTCCCCATCACCATCCCCATCCCCGTCCGTTCACCTCCGAACTTACCTAGCCTTGTGGAGCATATATGCATCTAGTACTTTAATTAGCTTCCGGAATTTTAAATCATATACTAGGTTGATGATTAAGTAATTTATTGTAATTGCTCAAGCGAATTTAGCAACTTGATTTGTTTAGTGCACACAACCCAGTCGTCGTGTATGGATTAATTAATCAGAAGTATCTGCATCTCATTTGTCATTTGGCTGCTAGCTCACTGCACCTTTTTTTTTTTTTCAGATTTGAATCACCATACAAATATACATAGAATGTGATAGCAGCAGCCCAGGCAGCGAGCCTATATAATTTTCAGTAGGCTAGTTAATTGTGATACTTGTAACCCTTTTTATCTTCTATCTTAATAACATTCGGATTGGCCTTTCTTCGGTCATCCTAGCAAGATACAATGCAGCATCACCGTGTTGTGTCATTGTTTACTGTTGGATGAACCTATATAGAGGCCTGACTTCCAGGAGGTCAAATTTATGATGGACTTAGAAGTGGACTTCCGTTTGATGATCTAGTTCATTAGAGAAGTGAAAGCAGTACCCCCAGCTCAACAGCTTAATGTCGATCTTGTAACCGCTTTGTAACCTCCTTTTCTTAATAAGATTTGGTCAGCCTAATCCTTCGGCTGACCCGTTAAAAAAGGTTAAAACAGTACTGTAGTTTGAGAGACTAAGGGAATAGTAGCACTTGGGTATTGTAACTTTCTAAGTTTGAAGATTGTGGGTTGTTTTCCTGGTGTATTATCATAGAACCAGTTCTATAATCGAGGTACATCTGGTAAATT]
consensusID : consensus_14046#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 987 fasta sequence
[CCGAACGATTGCTAGATAGCCAAAGCTCTTTTGTTGTTTCGGTGCTCTTCGGCTTCGTCGTCGGCGAGGGAGGGTTTGGTTTGGGAAGTTGGGGGGGATGGATCGGTCGATGGAGACGGTGGAGGAGGAGGTGGAGGAGTACAGCTGGAGGGAGGTGCTGCTGCCGCGGCTCGTCCCGGTGGTGTCGGACGCGGCGCCGGAGCTGGAGCGGGAGACGGGGGAGCGCCGCCGGGGCAGGGAGCTCCTCGTCGCCGTCGACTTCGGGCCCAACTCCAAGCACGNCTTCGACTGGGCGCTCGTGCACTTCGCCCGCATGGCCGACACGCTCCACCTCGTCCACGNCGTCTNCANTTTCAATAATGATCTAGTATATTAGAAAAGTCAGGAACTCATGGAGGATTTAGCCATTTAGGCATTTAAGACATNACT-GTCCGGACCAAGGCAAGGATTGTTGAAGGGGATGCTGGAAAGGTTATTTGCCGAGAGGCAGAGCGGCTAAAGCCTGCAGCAGTCATTCTGGGCACTCGTGGAAGAGGTCTAATTCAGAGTGTGTTGCAGGGAAGTGTCAGTGAATATTGCTTCCACAACTGTAAAGCAGCCCCAGTTATCATTGTTCCAGGCA-AAGAAGCTGGTGAACA-GTCTGTGCTTTAAAGGGCGGAAGAATGAAGATAGGTTGCAGATGATGGTGCGTCGGTATGGTGTTGTGCTTTCAATTATTGTAATTTTATACGTAGTGTTGTGAATTGTTAGCATATTTGTACTGGATTGGTATTGTTTGGTAGTGTAATGAAGGATGATGGATTGTTTAGAAGTTGGTGGAGTAG-CAAGGCAAATATAAACACACAAATGTACTTGTATTGCCA-TTGATGACATTAGTACAGTTTCTATGAATAAAGAATCTTCAGCCACAAATATTGATGTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGACATGCCGTTACGTAACGTATA]
[+] EMBL C93431 [CCGAACGATTGCTAGATAGCCAAAGCTCTTTTGTTGTTTCGGTGCTCTTCGGCTTCGTCGTCGGCGAGGGAGGGTTTGGTTTGGGAAGTTGGGGGGGATGGATCGGTCGATGGAGACGGTGGAGGAGGAGGTGGAGGAGTACAGCTGGAGGGAGGTGCTGCTGCCGCGGCTCGTCCCGGTGGTGTCGGACGCGGCGCCGGAGCTGGAGCGGGAGACGGGGGAGCGCCGCCGGGGCAGGGAGCTCCTCGTCGCCGTCGACTTCGGGCCCAACTCCAAGCACGNCTTCGACTGGGCGCTCGTGCACTTCGCCCGCATGGCCGACACGCTCCACCTCGTCCACGNCGTCTNCANTTTCAATAATGATCTAGTATATTAGAAAAGTCAGGAACTCATGGAGGATTTAGCCATTTAGGCATTTAAGACATNACT GTCCGGA ]
[+] EMBL AK070986 [ cAACGATTGCTAGATAGCCAAAGCTCTTTTGTTGTTTCGGTGCTCTTCGGCTTCGTCGTCGGCGAGGGAGGGTTTGGTTTGGGAAGTTGGGGGGGATGGATCGGTCGATGGAGACGGTGGAGGAGGAGGTGGAGGAGTACAGCTGGAGGGAGGTGCTGCTGCCGCGGCTCGTCCCGGTGGTGTCGGACGCGGCGCCGGAGCTGGAGCGGGAGACGGGGGAGCGCCGCCGGGGCAGGGAGCTCCTCGTCGCCGTCGACTTCGGGCCCAACTCCAAGCACGCCTTCGACTGGGCGCTCGTGCACTTCGCCCGCATGGCCGACACGCTCCACCTCGTCCACGCCGTCTCCAGTGTCAATAATGATCTAGTATATGAGAAAAGTCAGGAACTCATGGAGGATTTAGCCATTGAGGCATTGAAGACATCACTGGTCCGGACCAAGGCAAGGATTGTTGAAGGGGATGCTGGAAAGGTTATTTGCCGAGAGGCAGAGCGGCTAAAGCCTGCAGCAGTCATTCTGGGCACTCGTGGAAGAGGTCTAATTCAGAGTGTGTTGCAGGGAAGTGTCAGTGAATATTGCTTCCACAACTGTAAAGCAGCCCCAGTTATCATTGTTCCAGGCA AAGAAGCTGGTGAACA GTCTGTGCTTTAAAGGGCGGAAGAATGAAGATAGGTTGCAGATGATGGTGCGTCGGTATGGTGTTGTGCTTTCAATTATTGTAATTTTATACGTAGTGTTGTGAATTGTTAGCATATTTGTACTGGATTGGTATTGTTTGGTAGTGTAATGAAGGATGATGGATTGTTTAGAAGTTGGTGGAGTAG CAAGGCAAATATAAACACACAAATGTACTTGTATTGCCA TTGATGACATTAGTACAGTTTCTATGAATAAAGAATCTTCAGCCACAAATAT ]
[+] EMBL BI812053 [ AGAGCGGCTAAAGCCT CA CAGTCATTCTGGCCACTCGTGGAAGAGGTCTAATTCAGAGTGTGTT CAGGGAAGTGTCAGTGAATATTGCTTCCACAACTGTAAAGCAGCCCCCGTTATCATTGTTCCA GCACAAGAAGCTGGTGAACACGTCTGTGCTTTAAA GGCGGAAGAATGAAGATAGGTT CAGATGATGGTGCGTCGGTATGGT TTGTGCTTTC ATTATTGTAATTTTATACGTAGTGTTGTGAATTGTTAGCATATTTGTACTGGATTGGTATTGTTTGGTAGTGTAATGAAGGATGATGGATTGTTTAGAAGTTGGTGGAGTAGCCAAGGCAAATATAAACACACAAATGTACTTGTATTGCCACTTGATGACATTAGTACAGTTTCTATGAATAAAGAATCTTCAGCCACCAATATTGATGTGGTTAAAAAAAAAA ]
[+] EMBL CF319382 [ TATAAACACACAAATGTACTTGTATTGCCA TTGATGACATTAGTACAGTTTCTATGAATAAAGAATCTTCAGCCACAAATATTGATGTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGACATGCCGTTACGTAACGTATA]
[+] EMBL CF337011 [ TATAAACACACAAATGTACTTGTATTGCCA TTGATGACATTAGTACAGTTTCTATGAATAAAGAA ]
consensusID : consensus_14046#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 896 fasta sequence
[TTTTTTTTTTTTTTTTTTTAAACACACAAATGTACTTGTATTGCCATTGATGACATTAGTACAGTTTCTATGAATAAAGAATCTTCAGCCACAAATATTGATGTGGTTAAAACTCTTGGAATGCGGACTTCTCCTTCCTTCATTCCTTCTTACATTTCCATTTTGAGATTGTCTAGCAAACAATCACTCTGTACTGACTGAAACGGTGCATCAAATCCACTGAACAAACCGTGAGAGCCAATGTCCCAACCTGCAGCTCCATTCACGTTGAGGCATGGCTCCACCGATGCACCGGCCGGCACCGACATCGGCCCGCCCGGTGGTGAGTACTGGTTACTGACGACCATCTCCAGCCCATAGCCAGAGGATCCTGCAGAAGTTTGCATCTGCTGCAAGGGGCTCATCTGGAGGCAGGAAGGCTCGACCTGCGCCATCGGCAGCGCCATGGCCGGCAGAGCCGCAGGGTTGCACGCCGCCTGGCTGAGCTGCCGGCCGAAGAGGTCCTCGACGATGTTGAAGTTCACCACCGGGTTTGATGCCGCGATCTTCATGGACAAGAACTCGACTTGCTTCTGCAGGGACTGCACGTAGTTGATGATCTCGTCGAGCATGCCGGCCTTGCCGGTGACCTTGTTGCAACCGGGCACCAGCTCCTGCAGGTACCTCATCCTCTCGCTGATCCTCTCCCTCCTCACCCGTTCGGCGAGGCTGTGGCTGTCCGTGGCCTGCCCACGGCGGGCTCTGACGTGGATGTAGTCGGTCTTCTGGCCGGCGGTCACCGTCGACGCCGAGGTCGCCGGGGAATCCTTGGGTGACGCCACCTCCGCCTTCTTCTTGGCTCCTGGCCGTGCCCTCTCCGGCCTTCCTTTCCCCACCGCCGCCGCCATCTGATCGGG]
[+] EMBL CA762332 [TTTTTTTTTTTTTTTTTTTAAACACACAAATGTACTTGTATTGCCATTGATGACATTAGTACAGTTTCTATGAATAAAGAATCTTCAGCCACAAATATTGATGGGGTTAAAACTCTTGGAATGCGGACTTCTCCTTCCTTCATTCCTTCTTACATTTCCATTTTGAGATTGTCTAGCAAACAATCACTCTTTACTGACTGAAACGGTGCATCAAATCCACTGAACAAACCGGGGGAGCCAATGTCCCAACCTGCAGCTCCTTTCACGTTGAGGCATGGCTCCACCGATGCACCGGCCGGCACCGGCATCGGCCCGCCCGGTGGTGAGTACTGGTTACTGACGACCATCTCCAGCCCATAGCCAGAGGATCCTGCAAAAGTTTGCATCTGCTGCAAGGGGCTCATCTGGAGGCAGGAAGGCTCGACCTGCGCCATCGGCAGCGCCATGGCCGGCAGAGCCCCAGGGTTGCACGCCGCCTGGCTGAGCTGCCGGCCGAAAAGGTCCTCGACGATNTTGAAGTTCACCACCGGGTTTGATGCCGCGATCTTCATGGACAAGAACTCGACTTGCTTCTGCAGGGACTGCACGTAGTTAATGATCTCGTCAAGCATGCCGGCCTTGCCGGTGACCTTGGTGCAACCGGGCACCAGCTCCTGC GGGACCTCATCCTCTCGGTGAT ]
[-] EMBL AU097324 [ TTTTTAAACACACAAATGTACTTGTATTGCCATTGATGACATTAGTACAGTTTCTATGAATAAAGAATCTTCAGCCACAAATATTGATGTGGTTAAAACTCTTGGAATGCGGACTTCTCCTTCCTTCATTCCTTCTTACATTTCCATTTTGAGATTGTCTAGCAAACAATCACTCTGTACTGACTGAAACGGTGCATCAAATCCACTGAACAAACCGTGAGAGCCAATGTCCCAACCTGCAGCTCCATTCACGTTGAGGCATGGCTCCACCG ]
[-] EMBL AU101988 [ TTTTTAAACACACAAATGTACTTGTATTGCCATTGATGACATTAGTACAGTTTCTATGAATAAAGAATCTTCAGCCACAAATATTGATGTGGTTAAAACTCTTGGAATGCGGACTTCTCCTTCCTTCATTCCTTCTTACATTTCCATTTTGAGATTGTCTAGCAAACAATCACTCTGTACTGACTGAAACGGTGCATCAAATCCACTGAACAAACCGTGAGAGCCAATGTCCCAACCTGCAGCTCCATTCACGTTGAGGCATG ]
[-] EMBL AK119183 [ ATGTACTTGTATTGCCATTGATGACATTAGTACGGTTTCTATGAATAAAGAATCTTCAGCCACAAATATTGATGTGGTTAAAACTCTTGGAATGCGGACTTCTCCTTCCTTCATTCCTTCTTACATTTCCATTTTGAGATTGTCTAGCAAACAATCACTCTGTACTGACTGAAACGGTGCATCAAATCCACTGAACAAACCGTGAGAGCCAATGTCCCAACCTGCAGCTCCATTCACGTTGAGGCATGGCTCCACCGATGCACCGGCCGGCACCGACATCGGCCCGCCCGGTGGTGAGTACTGGTTACTGACGACCATCTCCAGCCCATAGCCAGAGGATCCTGCAGAAGTTTGCATCTGCTGCAAGGGGCTCATCTGGAGGCAGGAAGGCTCGACCTGCGCCATCGGCAGCGCCATGGCCGGCAGAGCCGCAGGGTTGCACGCCGCCTGGCTGAGCTGCCGGCCGAAGAGGTCCTCGACGATGTTGAAGTTCACCACCGGGTTTGATGCCGCGATCTTCATGGACAAGAACTCGACTTGCTTCTGCAGGGACTGCACGTAGTTGATGATCTCGTCGAGCATGCCGGCCTTGCCGGTGACCTTGTTGCAACCGGGCACCAGCTCCTGCAGGTACCTCATCCTCTCGCTGATCCTCTCCCTCCTCACCCGTTCGGCGAGGCTGTGGCTGTCCGTGGCCTGCCCACGGCGGGCTCTGACGTGGATGTAGTCGGTCTTCTGGCCGGCGGTCACCGTCGACGCCGAGGTCGCCGGGGAATCCTTGGGTGACGCCACCTCCGCCTTCTTCTTGGCTCCTGGCCGTGCCCTCTCCGGCCTTCCTTTCCCCACCGCCGCCGCCATCTGATCGGG]
[-] EMBL AK073952 [ ATGTACTTGTATTGCCATTGATGACATTAGTACAGTTTCTATGAATAAAGAATCTTCAGCCACAAATATTGATGTGGTTAAAACTCTTGGAATGCGGACTTCTCCTTCCTTCATTCCTTCTTACATTTCCATTTTGAGATTGTCTAGCAAACAATCACTCTGTACTGACTGAAACGGTGCATCAAATCCACTGAACAAACCGTGAGAGCCAATGTCCCAACCTGCAGCTCCATTCACGTTGAGGCATGGCTCCACCGATGCACCGGCCGGCACCGACATCGGCCCGCCCGGTGGTGAGTACTGGTTACTGACGACCATCTCCAGCCCATAGCCAGAGGATCCTGCAGAAGTTT TCTGCTGCAAGGGGCTCATCTGGAGGCAGGAAGGCTCGACCTGCGCCATCGGCAGCGCCATGGCCGGCAGAGCCGCAGGGTTGCACGCCGCCTGGCTGAGCTGCCGGCCGAAGAGGTCCTCGACGATGTTGAAGTTCACCACCGGGTTTGATGCCGCGATCTTCATGGACAAGAACTCGACTTGCTTCTGCAGGGACTGCACGTAGTTGATGATCTCGTCGAGCATGCCGGCCTTGCCGGTGACCTTGTTGCAACCGGGCACCAGCTCCTGCAGGTACCTCATCCTCTCGCTGATCCTCTCCCTCCTCACCCGTTCGGCGAGGCTGTGGCTGTCCGTGGCCTGCCCACGGCGGGCTCTGACGTGGATGTAGTCGGTCTTCTGGCCGGCGGTCACCGTCGACGCCGAGGTCGCCGGGGAATCCTTGGGTGACGCCACCTCCGCCTTCTTCTTGGCTCCTGGCCGTGCCCTCTCCGGCCTTCCTTTCCCCACCGCCGCCGCCATCTGATCGGG]
consensusID : consensus_14046#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTGGGGCTGAAGATTCTTTATTCATAGAAACTGTACTAATGTCATCAATGGCAATACAAGTACATTTGGGGGTTTATATTTGCCTTGCTACTCCACCAACTTCTAAACAATCCATCATCCTTCATTACACTACCAAACAATACCAATCCAGTACAGATATGCTAACAATTCACAACACTACGTATAAAATTACAATAATTGAAAGCACAACACCATACCGACGCACCATCATCTGCAACCTATCTTCATTCTTCCGCCCTTTAAAGCACAAACTGTTCACCAGCTTCTGCAAAGACACAACTTAGCCTTACTTGTACTGGAAGTAAAAGATAATTCGTCTGCAAAATATACCCTGACAGATACTTCTAATTTCTGGATGAATGCATTCAGGTCCCGCTCAAAGAAGGCATCTGATCTAAGGATCTAAGCATCTTATCTTGGTTTGAATTTTTTTAGAATAGCGATAAATTCAACCACTTCAATTAAATGAATCTTATCATTAGAAGACCATGATATAAATAAATTTACTCTCCCCTTGTCTCGGC]
[+] EMBL CA760732 [TTTTTTTTTTTTTTTTTTTTTTTTGGGGCTGAAGATTCTTTATTCATAGAAACTGTACTAATGTCATCAATGGCAATACAAGTACATTTGGGGGTTTATATTTGCCTTGCTACTCCACCAACTTCTAAACAATCCATCATCCTTCATTACACTACCAAACAATACCAATCCAGTACAGATATGCTAACAATTCACAACACTACGTATAAAATTACAATAATTGAAAGCACAACACCATACCGACGCACCATCATCTGCAACCTATCTTCATTCTTCCGCCCTTTAAAGCACAAACTGTTCACCAGCTTCTGCAAAGACACAACTTAGCCTTACTTGTACTGGAAGTAAAAGATAATTCGTCTGCAAAATATACCCTGACAGATACTTCTAATTTCTGGATGAATGCATTCAGGTCCCGCTCAAAGAAGGCATCTGATCTAAGGATCTAAGCATCTTATCTTGGTTTGAATTTTTTTAGAATAGCGATAAATTCAACCACTTCAATTAAATGAATCTTATCATTAGAAGACCATGATATAAATAAATTTACTCTCCCCTTGTCTCGGC]
consensusID : consensus_14046#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 164 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACCACATCAATATTTTGGGGTTGAAAATTTTTTTTTTATAAAAACCGTACTAATGTTATCAATGGCAATACAAGAACATTTGGGGGTTTATATTTGCCTTGCTACTCCTTCAATCCAT]
[+] EMBL CF338035 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACCACATCAATATTTTGGGGTTGAAAATTTTTTTTTTATAAAAACCGTACTAATGTTATCAATGGCAATACAAGAACATTTGGGGGTTTATATTTGCCTTGCTACTCCTTCAATCCAT]
consensusID : consensus_14046#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 162 fasta sequence
[TATAAACACACAAATGTACTTGTATTGCCATTGATGACATTAGTACGGTTTCTATGAATAAAGAATCTTCAGCCACAAATATTGATGTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGTCTTGCCG]
[+] EMBL CF338034 [TATAAACACACAAATGTACTTGTATTGCCATTGATGACATTAGTACGGTTTCTATGAATAAAGAATCTTCAGCCACAAATATTGATGTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGTCTTGCCG]
consensusID : consensus_14046#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 114 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTTATTTTTTATTCATATAAACTGTACTAATGTCATTAATGGCAATACAAATACATTTGTGTGTTTAT]
[+] EMBL CF319381 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTTATTTTTTATTCATATAAACTGTACTAATGTCATTAATGGCAATACAAATACATTTGTGTGTTTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14046#3 -----------------------------------------------TTTTTTTTTTTTT 13
consensus_14046#4 ----------------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 38
consensus_14046#6 --------------------------------TTTTTTTTTTTTTTTTTTTTTTTTTTTT 28
consensus_14046#1 ---CCGAACGATTGCTAGATAGCCAAAGCTCTTTTGTTGTTTCGGTGCTCTTCGGCTTCG 57
consensus_14046#5 ------------------------------------------------------------
consensus_14046#2 ---------------------------------------------TTTTTTTTTTTTTTT 15
consensus_14046#0 GTCATCAACGATTGCTAGATAGCCAAAGCTCTTTTGTTGTTTCGGTGCTCTTCGGCTTCG 60
consensus_14046#3 TTTTTTT-------------TTTTGGGGCTGAAGATTCTTTATTCATAGAAACTGTACTA 60
consensus_14046#4 TTTTTTTAACCACATCAATATTTTGGGGTTGAAAATTTTTTTTTTATAAAAACCGTACTA 98
consensus_14046#6 TTTTTTT-------------TTTTTTGGTTTTTTATTTTTTATTCATATAAACTGTACTA 75
consensus_14046#1 TCGTCGGCGAGGGAGGGTTTGGTTTGGGAAGTTGGGGGGGATGGATCGGTCGATGGAGAC 117
consensus_14046#5 ------------------------------------------------------------
consensus_14046#2 TTTTAAACACACAAATGTACTTGTATTGCCATTGATGACATTAGTACAGTTTCTATGAAT 75
consensus_14046#0 TCGTCGGCGAGGGAGGGTTTGGTTTGGGAAGTTGGGGGGGATGGATCGGTCGATGGAGAC 120
consensus_14046#3 ATGTCATCAATGGCAATACAAGTACATTTGGGGGTTTATATTTGCCTTGCTACTCCACCA 120
consensus_14046#4 ATGTTATCAATGGCAATACAAGAACATTTGGGGGTTTATATTTGCCTTGCTACTCCTTCA 158
consensus_14046#6 ATGTCATTAATGGCAATACAAATACATTTGTGTGTTTAT--------------------- 114
consensus_14046#1 GGTGGAGGAGGAGGTGGAGGAGTACAGCTGGAGGGAGGTGCTGCTGCCGCGGCTCGTCCC 177
consensus_14046#5 ------------------------------------------------------------
consensus_14046#2 AAAGAATCTTCAGCCACAAATATTGATGTGGTTAAAACTCTTGGAATGCGGACTTCTCCT 135
consensus_14046#0 GGTGGAGGAGGAGGTGGAGGAGTACAGCTGGAGGGAGGTGCTGCTGCCGCGGCTCGTCCC 180
consensus_14046#3 ACTTCTAAACAATCCATCATCCTTCATTACACTACCAAACAATACCAATCCAGTACAGAT 180
consensus_14046#4 ATCCAT------------------------------------------------------ 164
consensus_14046#6 ------------------------------------------------------------
consensus_14046#1 GGTGGTGTCGGACGCGGCGCCGGAGCTGGAGCGGGAGACGGGGGAGCGCCGCCGGGGCAG 237
consensus_14046#5 ------------------------------------------------------------
consensus_14046#2 TCCTTCATTCCTTCTTACATTTCCATTTT-GAGATTGTCTAGCAAACAATCACTCTGTAC 194
consensus_14046#0 GGTGGTGTCGGACGCGGCGCCGGAGCTGGAGCGGGAGACGGGGGAGCGCCGCCGGGGCAG 240
consensus_14046#3 ATGCTAACAATTCACAACACTACGTATAAAATTACAATAATTGAAAGCACAACACCATAC 240
consensus_14046#4 ------------------------------------------------------------
consensus_14046#6 ------------------------------------------------------------
consensus_14046#1 GGAGCTCCTCGTCGCCGTCGACTTCGGGCCCAACTCCAAGCACGNCTTCGACTGGGCGCT 297
consensus_14046#5 ------------------------------------------------------------
consensus_14046#2 TGACTGAAACGGTGCATCAAATCCACTGAACAAACCGTGAGAGCCAATGTCCCAACCTGC 254
consensus_14046#0 GGAGCTCCTCGTCGCCGTCGACTTCGGGCCCAACTCCAAGCACGCCTTCGACTGGGCGCT 300
consensus_14046#3 CGACGCACCATCATCTGCAACCTATCTTCATTCTTCCGCCCTTTAAAGCACAAACTGTTC 300
consensus_14046#4 ------------------------------------------------------------
consensus_14046#6 ------------------------------------------------------------
consensus_14046#1 CGTGCACTTCGCCCGCATGGCCGACACGCTCCACCTCGTCCACGNCGTCTNCANTTTCAA 357
consensus_14046#5 ------------------------------------------------------------
consensus_14046#2 AGCTCCATTCACGTTGAGGCATGGCTCCACCGATGCACCGGCCGGCACCGACATCGGCCC 314
consensus_14046#0 CGTGCACTTCGCCCGCATGGCCGACACGCTCCACCTCGTCCACGCCGTCTCCAGTTGAGC 360
consensus_14046#3 ACCAGCTTCTGCAAAGACACAACTTAGCCTTACTTGTACTGGAAGTAAAAGATAATTCGT 360
consensus_14046#4 ------------------------------------------------------------
consensus_14046#6 ------------------------------------------------------------
consensus_14046#1 TAATGATCTAGTATATTAGAAAAGTCAGGAACTCATGGAGGATTTAGCCATTTAGGCATT 417
consensus_14046#5 ------------------------------------------------------------
consensus_14046#2 GCCCGGTGGTGAGTACTGGTTAC-TGACGACCATCTCCAGCCCATAGCCAGAGGATCCTG 373
consensus_14046#0 ACCCTCCCCATCACCATCCCCATCCCCGTCCGTTCACCTCCGAACTTACCTAGCCTTGTG 420
consensus_14046#3 CTGCAAAA-TATACCCTGACAGATACTTCTAATTTCTGGATGAATGCATTCAGGTCCCGC 419
consensus_14046#4 ------------------------------------------------------------
consensus_14046#6 ------------------------------------------------------------
consensus_14046#1 TAAGACAT-NACTGTCCGGACCAAGGCAAGGATTGTTGAAGGGGATGCTGGAAAGGTTAT 476
consensus_14046#5 ------------------------------------------------------------
consensus_14046#2 CAGAAGTT-TGCATCTGCTGCAAGGGGCTCATCTGGAGGCAGGAAGGCTCGACCTGCGCC 432
consensus_14046#0 GAGCATATATGCATCTAGTACTTTAATTAGCTTCCGGAATTTTAAATCATATACTAGGTT 480
consensus_14046#3 TCAAAGAAGGCATCTGATCTAAGGATCTAAGCATCTTATCTTGGTTTGAATTTTTTTAGA 479
consensus_14046#4 ------------------------------------------------------------
consensus_14046#6 ------------------------------------------------------------
consensus_14046#1 TTGCCGAGAGGCAGAGCGGCTAAAGCCTGCAGCAGTCATTCTGGGCACTCGTGGAAGAGG 536
consensus_14046#5 ------------------------------------------------------------
consensus_14046#2 ATCGGCAGCGCCATGGCCGGCAGAGCCGCAGGGTTGCACGCCG------CCTGGCTGAGC 486
consensus_14046#0 GATGATTAAGTAATTTATTGTAATTGCTCAAGCGAATTTAGCAACTTGATTTGTTTAGTG 540
consensus_14046#3 ATAGCGATAAATTCAACCACTTCAATTA---AATGAATCTTATCATTAGAAGACCATGAT 536
consensus_14046#4 ------------------------------------------------------------
consensus_14046#6 ------------------------------------------------------------
consensus_14046#1 TCTAATTCAGAGTGTGTTGCAGGGAAGTGTCAGTGAATATTGCTTCCACAACTGTAAAGC 596
consensus_14046#5 ------------------------------------------------------------
consensus_14046#2 TGCCGGCCGAAGAGGTCCTCGACGATGT-----TGAAGTTCACCACCGGGTTTGATGCCG 541
consensus_14046#0 CACACAACCCAGTCGTCGTGTATGGATTA--ATTAATCAGAAGTATCTGCATCTCATTTG 598
consensus_14046#3 ATAAATAAATTTACTCTCCCCTTGTCTCGGC----------------------------- 567
consensus_14046#4 ------------------------------------------------------------
consensus_14046#6 ------------------------------------------------------------
consensus_14046#1 AGCCCCAGTTATCATTGTTCCAGGCAAAGAAGCTGGTGAACAGTCTGTGCTTTAAAGGGC 656
consensus_14046#5 ------------------------------------------------------------
consensus_14046#2 CGATCTTCATGGACAAGAACTCGACTTGCTTCTGCAGGGACTGCACGTAGTTGATGATCT 601
consensus_14046#0 TCATTTGGCTGCTAGCTCACTGCACCTTTTTTTTTTTTTCAGATTTGAATCACCATACAA 658
consensus_14046#3 ------------------------------------------------------------
consensus_14046#4 ------------------------------------------------------------
consensus_14046#6 ------------------------------------------------------------
consensus_14046#1 GGAAGAATGAAGATAGGTTGCAGATGATGGTGCGTCGGTATGGTGTTGTGCTTTCAATTA 716
consensus_14046#5 ------------------------------------------------------------
consensus_14046#2 CGTCGAGCATGCCGGCCTTGCCGGTGACCTTGTTGCAACCGGGCACCAGCTCCTGCAGGT 661
consensus_14046#0 ATATACATAGAATGTGATAGCAGCAGCCCAGGCAGCGAGCCTATATAATTTTCAGTAGGC 718
consensus_14046#3 ------------------------------------------------------------
consensus_14046#4 ------------------------------------------------------------
consensus_14046#6 ------------------------------------------------------------
consensus_14046#1 TTGTAA--TTTTATACGTAGTGTTGTGAATTGTTAGCATATTTGTACTGGATTGGTATTG 774
consensus_14046#5 ------------------------------------------------------------
consensus_14046#2 ACCTCA--TCCTCTCGCTGATCCTCTCCCTCCTCACCCGTTCGGCGAGGCTGTGGCTGTC 719
consensus_14046#0 TAGTTAATTGTGATACTTGTAACCCTTTTTATCTTCTATCTTAATAACATTCGGATTGGC 778
consensus_14046#3 ------------------------------------------------------------
consensus_14046#4 ------------------------------------------------------------
consensus_14046#6 ------------------------------------------------------------
consensus_14046#1 TTTGGTAGTGTAATGAAGGATGATGGATTGTTTAGAAGTTGGTGGAGTAGCAAG--GCAA 832
consensus_14046#5 ------------------------------------------------------------
consensus_14046#2 CGTGGCCTGCCCACGGCGGGCTCTGACGTGGAT-GTAGTCGGTCTTCTGGCCGGCGGTCA 778
consensus_14046#0 CTTTCTTCGGTCATCCTAGCAAGATACAATGCAGCATCACCGTGTTGTGTCATTGTTTAC 838
consensus_14046#3 ------------------------------------------------------------
consensus_14046#4 ------------------------------------------------------------
consensus_14046#6 ------------------------------------------------------------
consensus_14046#1 ATATAAACACACAAATGTACTTGTATTGCC--ATTGATGACATTAGTACAGTTTCTATGA 890
consensus_14046#5 -TATAAACACACAAATGTACTTGTATTGCC--ATTGATGACATTAGTACGGTTTCTATGA 57
consensus_14046#2 CCGTCGACGCCGAGGTCGCCGGGGAATCCTTGGGTGACGCCACCTCCGCCTTCTTCTTGG 838
consensus_14046#0 TGTTGGATGAACCTATATAGAGGCCTGACTTCCAGGAGGTCAAATTTATGATGGACTTAG 898
consensus_14046#3 ------------------------------------------------------------
consensus_14046#4 ------------------------------------------------------------
consensus_14046#6 ------------------------------------------------------------
consensus_14046#1 ATAAAGAATCTTCAGCCACAAATATTGATGTGGTTAAAAAAAAAAAAAAAAAAAAAAAAA 950
consensus_14046#5 ATAAAGAATCTTCAGCCACAAATATTGATGTGGTTAAAAAAAAAAAAAAAAAAAAAAAAA 117
consensus_14046#2 CTCCTGGCCGTGCCCTCTCCGGCCTTCCTTTCCCCACCGCCGCCGCCATCTGATCGGG-- 896
consensus_14046#0 AAGTGGACTTCCGTTTGATGATCTAGTTCATTAGAGAAGTGAAAGCAGTACCCCCAGCTC 958
consensus_14046#3 ------------------------------------------------------------
consensus_14046#4 ------------------------------------------------------------
consensus_14046#6 ------------------------------------------------------------
consensus_14046#1 AAAAAAAAAACACTGACATGCCGTTACGTAACGTATA----------------------- 987
consensus_14046#5 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGTCTTGCCG--------------- 162
consensus_14046#2 ------------------------------------------------------------
consensus_14046#0 AACAGCTTAATGTCGATCTTGTAACCGCTTTGTAACCTCCTTTTCTTAATAAGATTTGGT 1018
consensus_14046#3 ------------------------------------------------------------
consensus_14046#4 ------------------------------------------------------------
consensus_14046#6 ------------------------------------------------------------
consensus_14046#1 ------------------------------------------------------------
consensus_14046#5 ------------------------------------------------------------
consensus_14046#2 ------------------------------------------------------------
consensus_14046#0 CAGCCTAATCCTTCGGCTGACCCGTTAAAAAAGGTTAAAACAGTACTGTAGTTTGAGAGA 1078
consensus_14046#3 ------------------------------------------------------------
consensus_14046#4 ------------------------------------------------------------
consensus_14046#6 ------------------------------------------------------------
consensus_14046#1 ------------------------------------------------------------
consensus_14046#5 ------------------------------------------------------------
consensus_14046#2 ------------------------------------------------------------
consensus_14046#0 CTAAGGGAATAGTAGCACTTGGGTATTGTAACTTTCTAAGTTTGAAGATTGTGGGTTGTT 1138
consensus_14046#3 -------------------------------------------------------
consensus_14046#4 -------------------------------------------------------
consensus_14046#6 -------------------------------------------------------
consensus_14046#1 -------------------------------------------------------
consensus_14046#5 -------------------------------------------------------
consensus_14046#2 -------------------------------------------------------
consensus_14046#0 TTCCTGGTGTATTATCATAGAACCAGTTCTATAATCGAGGTACATCTGGTAAATT 1193
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||