cluster # 14110

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Oryza sativa
cluster # 14110 cluster # 14110 Sequences # 15 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14110#0 length = 1051 sequences # 10
consensus_14110#1 length = 667 sequences # 1

consensus_14110#2 length = 587 sequences # 1
consensus_14110#3 length = 521 sequences # 2
consensus_14110#4 length = 360 sequences # 1

consensusID : consensus_14110#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1051
fasta sequence

                              [TCCCCATTCGGTGAGTCGTCTTCGTCGTCTTGGGTACTCGCGCGCGCCAGCTCACTCCCAGATCTCCCCCCTCCTCTCCTCCCCGTCTCAGATCTCCACCGCCGCCGCCGCCGAAACCCTAGCCCAGCCCCCCGCCTTCCGCCGCGCGCGCGGGGGTGACCTCCGCGCCGCCGCCGCCATGGGCATCGTCTTCACGCGGCTCTTCTCGTCGGTCTTCGGCAACCGCGAGGCCCGCATCCTCGTCCTCGGCCTCGACAATGCCGGCAAGACCACCATCCTATATCGGCTGCAGATGGGGGAGGTCGTCTCCACGATCCCAACGATTGGGTTCAACGTGGAGACGGTGCAGTACAACAACATCAAGTTCCAAGTCTGGGATCTCGGTGGTCAAACAAGCATCAGGCCATACTGGAGATGCTACTTTCCAAATACCCAGGCTATCATTTATGTTGTCGATTCAAGTGATACAGATAGGCTTGTAACGGCAAAAGAAGAGTTTCATGCTAT-CCTT-GA-GGAGGATG-AG-CTAAAA--GGTGC--AGTT-GTCCTT-GT-ATATGC-GAAT-AAACAGG-ATCTT--CCAGGTG-CACTT-GAT-GATGCTGCC-ATAACGG-AAT-CATTAG-AACT-CCA-CAAGATTAAGAG-CCGTCAATGGGCGA-TTTTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTGGCT-CAGT-AATGCACTGAAAT-CCAAAAGCAGCTAATTTAGGAGCCTCTGTT-CCATGGATCATTGCTTGATGGTAAAGAACAGGGACACTGCTCCCTTTTCCTCACAAGTCTGCGTGAGAACCCCCATTCTCTTTGTTTTAACTCCAGAAGTTTTATACCATCGATTATCTGTAAAGTGCTTGTTAAAGTTTTCGGATACGACTTTAGATGTACCTCCATATTGAGATCAAGAATAGATTTGTAGAAAATGACGAGCAAACTGTCAGGACTCTTGGTCACTGGTGGCTTTACCCGTAAATCCCTTCTATTGTGACATTTTTTTCCGATGATTGAACACGCCTAATTTCCAAAAAAAAAAA]

[+] EMBL AK073613             [TCCCCATTCGGTGAGTCGTCTTCGTCGTCTTGGGTACTCGCGCGCGCCAGCTCACTCCCAGATCTCCCCCCTCCTCTCCTCCCCGTCTCAGATCTCCACCGCCGCCGCCGCCGAAACCCTAGCCCAGCCCCCCGCCTTCCGCCGCGCGCGCGGGGGTGACCTCCGCGCCGCCGCCGCCATGGGCATCGTCTTCACGCGGCTCTTCTCGTCGGTCTTCGGCAACCGCGAGGCCCGCATCCTCGTCCTCGGCCTCGACAATGCCGGCAAGACCACCATCCTATATCGGCTGCAGATGGGGGAGGTCGTCTCCACGATCCCAACGATTGGGTTCAACGTGGAGACGGTGCAGTACAACAACATCAAGTTCCAAGTCTGGGATCTCGGTGGTCAAACAAGCATCAGGCCATACTGGAGATGCTACTTTCCAAATACCCAGGCTATCATTTATGTTGTCGATTCAAGTGATACAGATAGGCTTGTAACGGCAAAAGAAGAGTTTCATGCTAT CCTT GA GGAGGATG AG CTAAAA  GGTGC  AGTT GTCCTT GT ATATGC GAAT AAACAGG ATCTT  CCAGGTG CACTT GAT GATGCTGCC ATAACGG AAT CATTAG AACT CCA CAAGATTAAGAG CCGTCAATGGGCGA TTTTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTGGCT CAGT AATGCACTGAAAT CCAAAAGCAGCTAATTTAGGAGCCTCTGTT CCATGGATCATTGCTTGATGGTAAAGAACAGGGACACTGCTCCCTTTTCCTCACAAGTCTGCGTGAGAACCCCCATTCTCTTTGTTTTAACTCCAGAAGTTTTATACCATCGATTATCTGTAAAGTGCTTGTTAAAGTTTTCGGATACGACTTTAGATGTACCTCCATATTGAGATCAAGAATAGATTTGTAGAAAATGACGAGCAAACTGTCAGGACTCTTGGTCACTGGTGGCTTTACCCGTAAATCCCTTCTATTGTGACATTTTTTTCCGATGATTGAACACGCCTA                 ]
[+] EMBL AU091684             [                  TCTTCGTCGTCTTGGGTACTCGCGCGCGCCA CTCACNCCCAGATCNCCCCCCTCCTCTCCTCCCCGTCTCAGATCNCCACCGCCGCCGCCGCCGAAACCCTAGCCCAGCCCCCCGCCTTCCGCCGCGCGCGCGNAGGTGACCTCCGCGCCGCCGCCGCCATNGGCATCGTCTTCACGCGGCTCTTCTCGTCGGTCTTCGGCAACCGCGAAGCCCGCATCCTCGTCCTCNGCCTCGACAATNCCGGCAAGACCANCATCCTATATCGGCTGCAGATNGGGGAGGTCGTCTCCACGATCCCAACGATTGGGTTCAACGTGGAGACGGTGCAGTACAACAACATCAAGTT CAAGTCTGGGATCTCGGTGGTC AACAAGCATCAGG CATACTGGAGATG TANTTTCCAAATAACCANGGTAT AATTATGGTGGCGATT AAGTGATACANATAGG TTGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU183310             [                                     TCGCGCGCGCCAGCTCACTCCCAGATCTCCCCCCTCCTCTCCTCCCCGTCTCAGATCTCCACCGCCGCCGCCGCCGAAACCCTAGCCCAGCCCCCCGCCTTCCGCCGCGCGCGCGGGGGTGACCTCCGCGCCGCCGCCGCCATGGGCATCGTCTTCACGCGGCTCTTCTCGTCGGTCTTCGGCAACCGCGAGGCCCGCATCCTCGTCCTCGGCCTCGACAATGCCGGCAAGACCACCATCCTATATCGGCTGCAGATGGGGGAGGTCGTCTCCACGATCCCAACGATTGGGTTCAACGTGGAGACGGTGCAGTACAACAACATCAAGTTCCAAGTCTGGGATCTCGGTGGTCAAACAAGCATCAGGCCATACTGGAGATGCTACTTTCCAAATACCCAGGCTATCATTTATGTTGTCGATTCAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU070159             [                                                                                                        CCGCCGCCGAAACCCTAGCCCAGCCCGCCGCCTTCCACCGCGCGCGCGGAGGTGACCNCCGCGCCGCCGCCGCCATGGGCATCGTCTTCACGCGGCTCTTCTCGTCGGTCTTCGGCAACCGCGAGGCCCGCATCCTCGTCCTCGGCCTCGACAATNCCGGCAAGACCACCATCCTATATCGGCTGCAGATGGGGGAGGTCGTCTCCACGATCCCAACGATTGGGTTCAACGTGGAGACGGTGCAGTACAACAACATCAAGTTCCAAGTCTGGGATCTCGGTGGTCAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BE229954             [                                                                                                                                                                                                                                                                                                                                                    ACGGTGCAGTACAACAACATCAAGTTCCAAGTCTGGGATCTCGGTGGTCAAACAAGCATCAGGCCATACTGGAGATGCTACTTTCCAAATACCCAGGCTATCATTTATGTTGTCGATTCAAGTGATACAGATAGGCTTGTAACGGCAAAAGAAGAGTTTCATGCTAT CCTT GA GGAGGATG AG CTAAAA  GGTGC  AGTT GTCCTT GT ATATGC GAAT AAACAGG ATCTT  CCAGGTG CACTT GAT GATGCTGCC ATAACGG AAT CATTAG AACT CCA CAAGATTAAGAG CCGTCAATGGGCGA TTTTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTGGCT CAGT AATGCACTGAAAT CCAAAAGCAGCTAATTTAGGAGCCTCTGTT CCATGGATCATTGCTTGATGGTAAAGAACAG                                                                                                                                                                                                                                                                                     ]
[+] EMBL CA998223             [                                                                                                                                                                                                                                                                                                                                                        TGCAGTACAACAACATCAAGTTCCAAGTCTGGGATCTCGGTGGTCAAACAAGCATCAGGCCATACTGGAGATGCTACTTTCCAAATACCCAGGCTATCATTTATGTTGTCGATTCAAGTGATACAGATAGGCTTGTAACGGCAAAAGAAGAGTTTCATGCTAT CCTT GA GGAGGATG AG CTAAAA  GGTGC  AGTT GTCCTT GT ATATGC GAAT AAACAGG ATCTT  CCAGGTG CACTT GAT GATGCTGCC ATAACGG AAT CATTAG AACT CCA CAAGATTAAGAG CCGTCAATGGGCGA TTTTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTGGCT CAGT AATGCACTGAAAT CCAAAAGCAGCTAATTTAGGAGCCTCTGTT CCATGGATCATTGCTTGATGGTAAAGAACAGGGACACTGCTCCCTTTTCCTCACAAGTCTGCGTGAGAACCCCCATTCTCTTTGTTTTAACTCCAGAAGTTTTATACCATCGATTATCTGTAAAGTGCTTGTTAAAGTTTTCGGATACGACTTTAGATGTACCTCCATATTGAGATCAAGAATAGATTTGTAGAANATGACGAGCAAACTGTCAGGACTCTTGGTCACTGGTGGCTTTACCCGTAAATCCCTTCTATTGTGACATTTTTTT                                     ]
[+] EMBL CA998507             [                                                                                                                                                                                                                                                                                                                                                        TGCAGTACAACAACATCAAGTTCCAAGTCTGGGATCTCGGTGGTCAAACAAGCATCAAGCCATACTGGAGATGCTACTTTCCAAATACCCAGGCTATCATTTATGTTGTCGATTCAAGTGATACAGATAGGCTTGTAACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BI798924             [                                                                                                                                                                                                                                                                                                                                                                                                                                                  AGCCTATCATTTATGTTGTCGATTCAAGTGATACAGATAGGCTTGTAAC GC AAAGAAGAGTTTCATGCTAT CCTT GA GGAGGATG AG CTAAAA  GGTCC  AGTT GTCCTT GT ATATGC GAAT AAACAGG ATCTT  CCAGGTG CACTT GAT GATGCTGCC ATAACGG AAT CATTAG AACT CCA CAAGATTAAGAG CCGTCAATGGGCGA TTTTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTGGCT CAGT AATGCACTGAAAT CC AAAGCAGCTAATTTAGGAGCCTCTGTT CCATGGATCATTGCTTGATGGTAAAGAACAGGGACACTGCTCCCTTTTCCTCACAAGTCTGCGTGAGAACCCCCATTCTCTTTGTTTTAACTCCAGAAGTTTTATACCATCGATTATCTGTAAAGTGCTTGTTAAAGTTTTCGGATACGACTTTAGATGTACCTCCATATTGAGATCAAGAATAGATTTGTAGAAAATGACGAGC AACTGTCAGGACTCTTGGTCACTGGTGGCTTTACCCGTAAATCCCTTCTATTGTGACATTTTTTTCCaaaaaaaa                           ]
[+] EMBL AU029290             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     gctTATCCCTTGGAGGGAGGATGNAGCCTAAAAAGGGTGCCAAGTTNGCCCTTGGTAATATGCGGAATAAAACAGGAATCTTTCCCAGGTGCCACTTGGATGGATGCTGCCNATAACGGAAATCCATTAGNAACTCCCACCAAGATTAAGAGCCCGTCAATGGGCGATTTTTCAANACATCTGCCNTAAAAGGAGAGGGCCTTTTTGAAGGTTTGGATTGGCTNCAGTAAATGCACTGAAATCCCAAAAGCAGCTAATTTAGGAGCCTCTGTTCCCATGGATCATTGCTTGATGGTAAAGAACAGGGACANTGCTCCCTTTTCCTCANAAGTCTGCGTGAGAACCCCCATTCTCTTTGTTTTAACTCCAGAAGTTTTATACCATCGATTATCTGTAAAGTGCTTGTTAAAGTTTTCGGATACGACTTTAGATGTACCTCCATATTGAGATCAAGAATAGATTTGTAGAAAATGACGAGCAAACTGTCAGGACTCTTGGTCACTGGTGGCTTTACCCGTAAATCCCTTCTATTGTGACATTTTTTTCCGATGATTGAACACGCCTAATTTCCAAAAA      ]
[-] EMBL CF311102             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GACTGGCT CAGT AATGCACTGAAAT CCAAAAGCAGCTAATTTAGGAGCCTCTGTT CCATGGATCATTGCTTGATGGTAAAGAACAGGGACACTGCTCCCTTTTCCTCACAAGTCTGCGTGAGAACCCCCATTCTCTTTGTTTTAACTCCAGAAGTTTTATACCATCGATTATCTGTAAAGTGCTTGTTAAAGTTTTCGGATACGACTTTAGATGTACCTCCATATTGAGATCAAGAATAGATTTGTAGAAAATGACGAGCAAACTGTCAGGACTCTTGGTCACTGGTGGCTTTACCCGTAAATCCCTTCTATTGTGACATTTTTTTCCGATGATTGAACACGCCTAATTTCCACCTAAAAAAA]




>consensus_14110#0
TCCCCATTCGGTGAGTCGTCTTCGTCGTCTTGGGTACTCGCGCGCGCCAGCTCACTCCCA
GATCTCCCCCCTCCTCTCCTCCCCGTCTCAGATCTCCACCGCCGCCGCCGCCGAAACCCT
AGCCCAGCCCCCCGCCTTCCGCCGCGCGCGCGGGGGTGACCTCCGCGCCGCCGCCGCCAT
GGGCATCGTCTTCACGCGGCTCTTCTCGTCGGTCTTCGGCAACCGCGAGGCCCGCATCCT
CGTCCTCGGCCTCGACAATGCCGGCAAGACCACCATCCTATATCGGCTGCAGATGGGGGA
GGTCGTCTCCACGATCCCAACGATTGGGTTCAACGTGGAGACGGTGCAGTACAACAACAT
CAAGTTCCAAGTCTGGGATCTCGGTGGTCAAACAAGCATCAGGCCATACTGGAGATGCTA
CTTTCCAAATACCCAGGCTATCATTTATGTTGTCGATTCAAGTGATACAGATAGGCTTGT
AACGGCAAAAGAAGAGTTTCATGCTATCCTTGAGGAGGATGAGCTAAAAGGTGCAGTTGT
CCTTGTATATGCGAATAAACAGGATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGA
ATCATTAGAACTCCACAAGATTAAGAGCCGTCAATGGGCGATTTTCAAAACATCTGCCAT
AAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTGGCTCAGTAATGCACTGAAATCCAAAAG
CAGCTAATTTAGGAGCCTCTGTTCCATGGATCATTGCTTGATGGTAAAGAACAGGGACAC
TGCTCCCTTTTCCTCACAAGTCTGCGTGAGAACCCCCATTCTCTTTGTTTTAACTCCAGA
AGTTTTATACCATCGATTATCTGTAAAGTGCTTGTTAAAGTTTTCGGATACGACTTTAGA
TGTACCTCCATATTGAGATCAAGAATAGATTTGTAGAAAATGACGAGCAAACTGTCAGGA
CTCTTGGTCACTGGTGGCTTTACCCGTAAATCCCTTCTATTGTGACATTTTTTTCCGATG
ATTGAACACGCCTAATTTCCAAAAAAAAAAA

consensusID : consensus_14110#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 667
fasta sequence

                              [AATGAAATTGTAATTGTTTACCTTATACTTACGTGTTTAGTTCAGGATTCACAAGAATATTTAAACTTTATAGTCAACCTTCACTTATGTCTTGCTACTTCTGATTCCTTTCTGTTACTCTTTTGTATTCAAGTATGTTTCCTTTGTTAGGCATGGATTCTCTTAGATTATTTGACTTCCTTCCTTTTAAAGACTAGGCATGACACGTTTCTCTACGCCATTAACATATTCACCTTTTTAGGCCATACTGGAGATGCTACTTTCCAAATACCCAGGCTATCATTTATGTTGTCGATTCAAGTGATACAGATAGGCTTGTAACGGCAAAAGAAGAGTTTCATGCTATCCTTGAGGAGGATGAGCTAAAANGGTGCAGTTGTCCTTGTATATGCGAATAAACAGGATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTCCACAAGATTAAGAGCCGTCAATGNGGCGATTTTCAAAACATCTGCCATAAAAGGGAGAGGGCCTNTTTTGAAGGGTTTGGACCTGGCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTCCATGGATCATTGCTTGATGGTAAAGAACAGGGACACTGCTCCCTTTTCCTCACAAGTCTGCGTGAGAACCCCATTCTC]

[+] EMBL CF311103             [AATGAAATTGTAATTGTTTACCTTATACTTACGTGTTTAGTTCAGGATTCACAAGAATATTTAAACTTTATAGTCAACCTTCACTTATGTCTTGCTACTTCTGATTCCTTTCTGTTACTCTTTTGTATTCAAGTATGTTTCCTTTGTTAGGCATGGATTCTCTTAGATTATTTGACTTCCTTCCTTTTAAAGACTAGGCATGACACGTTTCTCTACGCCATTAACATATTCACCTTTTTAGGCCATACTGGAGATGCTACTTTCCAAATACCCAGGCTATCATTTATGTTGTCGATTCAAGTGATACAGATAGGCTTGTAACGGCAAAAGAAGAGTTTCATGCTATCCTTGAGGAGGATGAGCTAAAANGGTGCAGTTGTCCTTGTATATGCGAATAAACAGGATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTCCACAAGATTAAGAGCCGTCAATGNGGCGATTTTCAAAACATCTGCCATAAAAGGGAGAGGGCCTNTTTTGAAGGGTTTGGACCTGGCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTCCATGGATCATTGCTTGATGGTAAAGAACAGGGACACTGCTCCCTTTTCCTCACAAGTCTGCGTGAGAACCCCATTCTC]




>consensus_14110#1
AATGAAATTGTAATTGTTTACCTTATACTTACGTGTTTAGTTCAGGATTCACAAGAATAT
TTAAACTTTATAGTCAACCTTCACTTATGTCTTGCTACTTCTGATTCCTTTCTGTTACTC
TTTTGTATTCAAGTATGTTTCCTTTGTTAGGCATGGATTCTCTTAGATTATTTGACTTCC
TTCCTTTTAAAGACTAGGCATGACACGTTTCTCTACGCCATTAACATATTCACCTTTTTA
GGCCATACTGGAGATGCTACTTTCCAAATACCCAGGCTATCATTTATGTTGTCGATTCAA
GTGATACAGATAGGCTTGTAACGGCAAAAGAAGAGTTTCATGCTATCCTTGAGGAGGATG
AGCTAAAANGGTGCAGTTGTCCTTGTATATGCGAATAAACAGGATCTTCCAGGTGCACTT
GATGATGCTGCCATAACGGAATCATTAGAACTCCACAAGATTAAGAGCCGTCAATGNGGC
GATTTTCAAAACATCTGCCATAAAAGGGAGAGGGCCTNTTTTGAAGGGTTTGGACCTGGC
TCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTCCATGGATCATT
GCTTGATGGTAAAGAACAGGGACACTGCTCCCTTTTCCTCACAAGTCTGCGTGAGAACCC
CATTCTC

consensusID : consensus_14110#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 587
fasta sequence

                              [CTTTCGTTACATGGTGTTACGCTTGTGTAGACATGAATCCCATATCCTAATGATTTTTAAGGCTATAGCAGTACACACTGAATTGATTTCATTTAGGGTGCATTGTTGCTTATTGGCTGCTTGCCTTCAACTGGCAGGAGGATGTAGCTAAAAGGTGCAGTCGTCCTTGTATATGCGAATAAACAGGATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTCCACACAGATTAAGAGCCGTCATATGGGCGATGTTCCGAAACATCTGCCATAAAAGGAGAGGCCTTTTTGAAGGTTTGGACTGGCTCAGTAATGCACTGAAATCCCAAAGCAGCTAATTTAGGAGCATCTGTTCCACTGGATCATTTATTGATGGTAAAGAACAGGGACACTGCTCCCTTTTCCTCACCAAGTCTGCGTGAGAACCCCCCTTCTCTTTGTTTTAACTCCAGAAGTTTTATACCATCGATTATCTGTAAAGTGCTTGTTAAAGTTTTCGGATACGACTTTAGATGTACCTCCATATTGAGATCAAGAATAGATTTGTAGAAAATGACGAGCCAAAAAAAAAA]

[+] EMBL BI808588             [CTTTCGTTACATGGTGTTACGCTTGTGTAGACATGAATCCCATATCCTAATGATTTTTAAGGCTATAGCAGTACACACTGAATTGATTTCATTTAGGGTGCATTGTTGCTTATTGGCTGCTTGCCTTCAACTGGCAGGAGGATGTAGCTAAAAGGTGCAGTCGTCCTTGTATATGCGAATAAACAGGATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTCCACACAGATTAAGAGCCGTCATATGGGCGATGTTCCGAAACATCTGCCATAAAAGGAGAGGCCTTTTTGAAGGTTTGGACTGGCTCAGTAATGCACTGAAATCCCAAAGCAGCTAATTTAGGAGCATCTGTTCCACTGGATCATTTATTGATGGTAAAGAACAGGGACACTGCTCCCTTTTCCTCACCAAGTCTGCGTGAGAACCCCCCTTCTCTTTGTTTTAACTCCAGAAGTTTTATACCATCGATTATCTGTAAAGTGCTTGTTAAAGTTTTCGGATACGACTTTAGATGTACCTCCATATTGAGATCAAGAATAGATTTGTAGAAAATGACGAGCCAAAAAAAAAA]




>consensus_14110#2
CTTTCGTTACATGGTGTTACGCTTGTGTAGACATGAATCCCATATCCTAATGATTTTTAA
GGCTATAGCAGTACACACTGAATTGATTTCATTTAGGGTGCATTGTTGCTTATTGGCTGC
TTGCCTTCAACTGGCAGGAGGATGTAGCTAAAAGGTGCAGTCGTCCTTGTATATGCGAAT
AAACAGGATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTCCAC
ACAGATTAAGAGCCGTCATATGGGCGATGTTCCGAAACATCTGCCATAAAAGGAGAGGCC
TTTTTGAAGGTTTGGACTGGCTCAGTAATGCACTGAAATCCCAAAGCAGCTAATTTAGGA
GCATCTGTTCCACTGGATCATTTATTGATGGTAAAGAACAGGGACACTGCTCCCTTTTCC
TCACCAAGTCTGCGTGAGAACCCCCCTTCTCTTTGTTTTAACTCCAGAAGTTTTATACCA
TCGATTATCTGTAAAGTGCTTGTTAAAGTTTTCGGATACGACTTTAGATGTACCTCCATA
TTGAGATCAAGAATAGATTTGTAGAAAATGACGAGCCAAAAAAAAAA

consensusID : consensus_14110#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 521
fasta sequence

                              [GAGACAAGGGGTAGTGAGCCGAGGCGATACAAGGGGGAATAAACAGGATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATNCTTAGAACTCCACAAGATTAAGAGCCGTCAATGGGCGATTTTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTGGCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTCCATGGATCATTGCTTGATGGTAAAGAACAGGGACACTGCTCCCTTTTCCTCACAAGTCTGCGTGAGAACCCCCATTCTCTTTGTTTTAACTCCAGAAGTTTTATACCATCGATTATCTGTAAAGTGCTTGTTAAAGTTTTCGGATACGACTTTAGATGTACCTCCATATTGAGATCAAGAATAGATTTGTAGAAAATGACGAGCAAACTGTCAGGACTCTTGGTCACTGGTGGCTTTACCCGTAAATCCCTTCTATTGTGACATTTTTTTCCGATGATTGAACACGCCTAATT]

[+] EMBL CA765788             [GAGACAAGGGGTAGTGAGCCGAGGCGATACAAGGGGGAATAAACAGGATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATNCTTAGAACTCCACAAGATTAAGAGCCGTCAATGGGCGATTTTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTGGCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTCCATGGATCATTGCTTGATGGTAAAGAACAGGGACACTGCTCCCTTTTCCTCACAAGTCTGCGTGAGAACCCCCATTCTCTTTGTTTTAACTCCAGAAGTTTTATACCATCGATTATCTGTAAAGTGCTTGTTAAAGTTTTCGGATACGACTTTAGATGTACCTCCATATTGAGATCAAGAATAGATTTGTAGAAAATGACGAGCAAACTGTCAGGACTCTTGGTCACTGGTGGCTTTACCCGTAAATCCCTTCTATTGTGACATTTTTTTCCGATGATTGAACACGCCTAATT]
[+] EMBL AA751317             [                                                                                                                                           GCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTGGCTCAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGNGCCTCTGTTCCATGGATCATTGCTTGATGGTAAAGAACAGGGACACTGCTCCCTTTGGCTCACAAGTCTGCGTGAGAACGCCCATTCTCTTTGTTTTAACTCCAGAAGTTTTATDCCATCGATTATCTGTAAAGTGCTTGTTAAA                                                                                                                                                              ]




>consensus_14110#3
GAGACAAGGGGTAGTGAGCCGAGGCGATACAAGGGGGAATAAACAGGATCTTCCAGGTGC
ACTTGATGATGCTGCCATAACGGAATNCTTAGAACTCCACAAGATTAAGAGCCGTCAATG
GGCGATTTTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTGGCT
CAGTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTCCATGGATCATTG
CTTGATGGTAAAGAACAGGGACACTGCTCCCTTTTCCTCACAAGTCTGCGTGAGAACCCC
CATTCTCTTTGTTTTAACTCCAGAAGTTTTATACCATCGATTATCTGTAAAGTGCTTGTT
AAAGTTTTCGGATACGACTTTAGATGTACCTCCATATTGAGATCAAGAATAGATTTGTAG
AAAATGACGAGCAAACTGTCAGGACTCTTGGTCACTGGTGGCTTTACCCGTAAATCCCTT
CTATTGTGACATTTTTTTCCGATGATTGAACACGCCTAATT

consensusID : consensus_14110#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 360
fasta sequence

                              [CGGGCTGCGGATTCGGCCGAGGACGAGCGAGAGGGCCTTTTTGAANGTTTGGACTGGCTCNTTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTCCATGGATCATTGCTTGATGGTAAAGAACAGGGACACTGCTCCCTTTTCCTCACAAGTCTGCGTGAGAACCCCCATTCTCTTTGTTTTAACTCCAGAAGTTTTATACCATCGATTATCTGTAAAGTGCTTGTTAAAGTTTTCGGATACGACTTTAGATGTACCTCCATATTGAGATCAAGAATAGATTTGTAGAAAATGACGAGCAAACTGTCAGGACTCTTGGTCACTGGTGGCTTTNNCCGTAAATCCCTTC]

[+] EMBL AA753156             [CGGGCTGCGGATTCGGCCGAGGACGAGCGAGAGGGCCTTTTTGAANGTTTGGACTGGCTCNTTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTCCATGGATCATTGCTTGATGGTAAAGAACAGGGACACTGCTCCCTTTTCCTCACAAGTCTGCGTGAGAACCCCCATTCTCTTTGTTTTAACTCCAGAAGTTTTATACCATCGATTATCTGTAAAGTGCTTGTTAAAGTTTTCGGATACGACTTTAGATGTACCTCCATATTGAGATCAAGAATAGATTTGTAGAAAATGACGAGCAAACTGTCAGGACTCTTGGTCACTGGTGGCTTTNNCCGTAAATCCCTTC]




>consensus_14110#4
CGGGCTGCGGATTCGGCCGAGGACGAGCGAGAGGGCCTTTTTGAANGTTTGGACTGGCTC
NTTAATGCACTGAAATCCAAAAGCAGCTAATTTAGGAGCCTCTGTTCCATGGATCATTGC
TTGATGGTAAAGAACAGGGACACTGCTCCCTTTTCCTCACAAGTCTGCGTGAGAACCCCC
ATTCTCTTTGTTTTAACTCCAGAAGTTTTATACCATCGATTATCTGTAAAGTGCTTGTTA
AAGTTTTCGGATACGACTTTAGATGTACCTCCATATTGAGATCAAGAATAGATTTGTAGA
AAATGACGAGCAAACTGTCAGGACTCTTGGTCACTGGTGGCTTTNNCCGTAAATCCCTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14110#3      ------------------------------------------------------------
consensus_14110#4      ------------------------------------------------------------
consensus_14110#0      TCCCCATTCGGTGAGTCGTCTTCGTCGTCTTGGGTACTCGCGCGCGCCAGCTCACTCCCA 60
consensus_14110#2      ------------------------------------------------------------
consensus_14110#1      ------------------------------------------------------------
                                                                                   

consensus_14110#3      ------------------------------------------------------------
consensus_14110#4      ------------------------------------------------------------
consensus_14110#0      GATCTCCCCCCTCCTCTCCTCCCCGTCTCAGATCTCCACCGCCGCCGCCGCCGAAACCCT 120
consensus_14110#2      ------------------------------------------------------------
consensus_14110#1      ------------------------------------------------------------
                                                                                   

consensus_14110#3      ------------------------------------------------------------
consensus_14110#4      ------------------------------------------------------------
consensus_14110#0      AGCCCAGCCCCCCGCCTTCCGCCGCGCGCGCGGGGGTGACCTCCGCGCCGCCGCCGCCAT 180
consensus_14110#2      ------------------------------------------------------------
consensus_14110#1      -----------------------------------------AATGAAATTGTAATTGTTT 19
                                                                                   

consensus_14110#3      ------------------------------------------------------------
consensus_14110#4      ------------------------------------------------------------
consensus_14110#0      GGGCATCGTCTTCACGCGGCTCTTCTCGTCGGTCTTCGGCAACCGCGAGGCCCGCATCCT 240
consensus_14110#2      ------------------------------------------------------------
consensus_14110#1      ACCTTATACTTACGTGTTTAGTTCAGGATTCACAAGAATATTTAAACTTTATAGTCAACC 79
                                                                                   

consensus_14110#3      ------------------------------------------------------------
consensus_14110#4      ------------------------------------------------------------
consensus_14110#0      CGTCCTCGGCCTCGACAATGCCGGCAAGACCACCATCCTATATCGGCTGCAGATGGGGGA 300
consensus_14110#2      ------------------------------------------------------------
consensus_14110#1      TTCACTTATGTCTTGCTACTTCTGATTCCTTTCTGTTACTCTTTTGTATTCAAGTATGTT 139
                                                                                   

consensus_14110#3      ------------------------------------------------------------
consensus_14110#4      ------------------------------------------------------------
consensus_14110#0      GGTCGTCTCCACGATCCCAACGATTGGGTTCAACGTGGAGACGGTGCAGTACAACAACAT 360
consensus_14110#2      ------------------------------------------------------------
consensus_14110#1      TCCTTTGTTAGGCATGGATTCTCTTAGATTATTTGACTTCCTTCCTTTTAAAGACTAGGC 199
                                                                                   

consensus_14110#3      ------------------------------------------------------------
consensus_14110#4      ------------------------------------------------------------
consensus_14110#0      CAAGTTCCAAGTCTGGGATCTCGGTGGTCAAACAAGCATCAGGCCATACTGGAGATGCTA 420
consensus_14110#2      ----------------CTTTCGTTACATGGTGTTACGCTTGTGTAGACATGAATCCCATA 44
consensus_14110#1      ATGACACGTTTCTCTACGCCATTAACATATTCACCTTTTTAGGCCATACTGGAGATGCTA 259
                                                                                   

consensus_14110#3      ------------------------------------------------------------
consensus_14110#4      ------------------------------------------------------------
consensus_14110#0      CTTTCCAAATACCCAGGCTATCATTTATGTTGTCGATTCAAGTGATACAGATAGGCTTGT 480
consensus_14110#2      TCCTAATGATTTTTAAGGCTATAGCAGTACACACTGAATTGATTTCATTTAGGGTGCATT 104
consensus_14110#1      CTTTCCAAATACCCAGGCTATCATTTATGTTGTCGATTCAAGTGATACAGATAGGCTTGT 319
                                                                                   

consensus_14110#3      -----------------------------------GAGACAAGGGGTAGTG-AGCCGAGG 24
consensus_14110#4      ------------------------------------------------------------
consensus_14110#0      AACGGCAAAAGAAGAGTTTCATGCTATCCTTGAGGAGGATGAGCTAAAAGG-TGCAGTTG 539
consensus_14110#2      GTTGCTTATTGGCTGCTTGCCTTCAACTGGCAGGAGGATGTAGCTAAAAGG-TGCAGTCG 163
consensus_14110#1      AACGGCAAAAGAAGAGTTTCATGCTATCCTTGAGGAGGATGAGCTAAAANGGTGCAGTTG 379
                                                                                   

consensus_14110#3      -CGATACAAGGGGGAATAAACAGGATCTTCCAGGTGCACTTGATGATGCTGCCATAACGG 83
consensus_14110#4      ------------------------------------------------------------
consensus_14110#0      TCCTTGTATATGCGAATAAACAGGATCTTCCAGGTGCACTTGATGATGCTGCCATAACGG 599
consensus_14110#2      TCCTTGTATATGCGAATAAACAGGATCTTCCAGGTGCACTTGATGATGCTGCCATAACGG 223
consensus_14110#1      TCCTTGTATATGCGAATAAACAGGATCTTCCAGGTGCACTTGATGATGCTGCCATAACGG 439
                                                                                   

consensus_14110#3      AATNCTTAGAACTCCACA-AGATTAAGAGCCGTCA-ATGGGCGATTTTCAAAA-CATCTG 140
consensus_14110#4      -----------------------------------------CGGGCTGCGGATTCGGCCG 19
consensus_14110#0      AATCATTAGAACTCCACA-AGATTAAGAGCCGTCA-ATGGGCGATTTTCAAAA-CATCTG 656
consensus_14110#2      AATCATTAGAACTCCACACAGATTAAGAGCCGTCATATGGGCGATGTTCCGAAACATCTG 283
consensus_14110#1      AATCATTAGAACTCCACA-AGATTAAGAGCCGTCAATGNGGCGATTTTCAAAA-CATCTG 497
                                                                **   * *  *  *  * *

consensus_14110#3      CCATAAAAGG-AGAGGGCCTTTTT--GAAGGTTTGGAC-TGGCTCAGTAATGCACTGAAA 196
consensus_14110#4      AGGACGAGCG-AGAGGGCCTTTTT--GAANGTTTGGAC-TGGCTCNTTAATGCACTGAAA 75
consensus_14110#0      CCATAAAAGG-AGAGGGCCTTTTT--GAAGGTTTGGAC-TGGCTCAGTAATGCACTGAAA 712
consensus_14110#2      CCATAAAAGG-AGAGG-CCTTTTT--GAAGGTTTGGAC-TGGCTCAGTAATGCACTGAAA 338
consensus_14110#1      CCATAAAAGGGAGAGGGCCTNTTTTGAAGGGTTTGGACCTGGCTCAGTAATGCACTGAAA 557
                             *  * ***** *** ***   *  ******** ******  *************

consensus_14110#3      TCCAAAAGCAGCTAATTTAGGAGCCTCTGTTCCA-TGGATCATTGCTTGATGGTAAAGAA 255
consensus_14110#4      TCCAAAAGCAGCTAATTTAGGAGCCTCTGTTCCA-TGGATCATTGCTTGATGGTAAAGAA 134
consensus_14110#0      TCCAAAAGCAGCTAATTTAGGAGCCTCTGTTCCA-TGGATCATTGCTTGATGGTAAAGAA 771
consensus_14110#2      TCCCAAAGCAGCTAATTTAGGAGCATCTGTTCCACTGGATCATTTATTGATGGTAAAGAA 398
consensus_14110#1      TCCAAAAGCAGCTAATTTAGGAGCCTCTGTTCCA-TGGATCATTGCTTGATGGTAAAGAA 616
                       *** ******************** ********* *********  **************

consensus_14110#3      CAGGGACACTGCTCCCTTTTCCTCAC-AAGTCTGCGTGAGAACCCCCATTCTCTTTGTTT 314
consensus_14110#4      CAGGGACACTGCTCCCTTTTCCTCAC-AAGTCTGCGTGAGAACCCCCATTCTCTTTGTTT 193
consensus_14110#0      CAGGGACACTGCTCCCTTTTCCTCAC-AAGTCTGCGTGAGAACCCCCATTCTCTTTGTTT 830
consensus_14110#2      CAGGGACACTGCTCCCTTTTCCTCACCAAGTCTGCGTGAGAACCCCCCTTCTCTTTGTTT 458
consensus_14110#1      CAGGGACACTGCTCCCTTTTCCTCAC-AAGTCTGCGTGAGAACCCC-ATTCTC------- 667
                       ************************** *******************  *****       

consensus_14110#3      TAACTCCAGAAGTTTTATACCATCGATTATCTGTAAAGTGCTTGTTAAAGTTTTCGGATA 374
consensus_14110#4      TAACTCCAGAAGTTTTATACCATCGATTATCTGTAAAGTGCTTGTTAAAGTTTTCGGATA 253
consensus_14110#0      TAACTCCAGAAGTTTTATACCATCGATTATCTGTAAAGTGCTTGTTAAAGTTTTCGGATA 890
consensus_14110#2      TAACTCCAGAAGTTTTATACCATCGATTATCTGTAAAGTGCTTGTTAAAGTTTTCGGATA 518
consensus_14110#1      ------------------------------------------------------------
                                                                                   

consensus_14110#3      CGACTTTAGATGTACCTCCATATTGAGATCAAGAATAGATTTGTAGAAAATGACGAGCAA 434
consensus_14110#4      CGACTTTAGATGTACCTCCATATTGAGATCAAGAATAGATTTGTAGAAAATGACGAGCAA 313
consensus_14110#0      CGACTTTAGATGTACCTCCATATTGAGATCAAGAATAGATTTGTAGAAAATGACGAGCAA 950
consensus_14110#2      CGACTTTAGATGTACCTCCATATTGAGATCAAGAATAGATTTGTAGAAAATGACGAGCCA 578
consensus_14110#1      ------------------------------------------------------------
                                                                                   

consensus_14110#3      ACTGTCAGGACTCTTGGTCACTGGTGGCTTTACCCGTAAATCCCTTCTATTGTGACATTT 494
consensus_14110#4      ACTGTCAGGACTCTTGGTCACTGGTGGCTTTNNCCGTAAATCCCTTC------------- 360
consensus_14110#0      ACTGTCAGGACTCTTGGTCACTGGTGGCTTTACCCGTAAATCCCTTCTATTGTGACATTT 1010
consensus_14110#2      AAAAAAAAA--------------------------------------------------- 587
consensus_14110#1      ------------------------------------------------------------
                                                                                   

consensus_14110#3      TTTTCCGATGATTGAACACGCCTAATT-------------- 521
consensus_14110#4      -----------------------------------------
consensus_14110#0      TTTTCCGATGATTGAACACGCCTAATTTCCAAAAAAAAAAA 1051
consensus_14110#2      -----------------------------------------
consensus_14110#1      -----------------------------------------