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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1422#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 736 fasta sequence
[ACAACGCAACTGAACAACCTCGCCGGTGAGCAGCTAAAGCTAAGCTGAGGTTAGCCATGGCGGCGGCGATGGGGTTGGAGAGGAAGGCGAAGGTGGCGGAGGTGGCGCTGCGGTGCGCGGTGTGCGCCCTGGCGGCGCTGGCGGCGGCGCTGGTGGGCACGGGAAGCCAGACGAGGACCTTCTTCTCGCTGGAGAAGAAGGCCAGGTTCACGGACATGAAGGCACTCGTCCTCCTCGTCGCCGCCCACGGCGCCGCCGCCGTGTACAGCCTGCTCCAGCTGGCGCGGTGCGCCGCGGCCGCGGCGTGGAAAGGCGGCAGCAATGGCGGCGCGGCGGTGGTGGCGTGGTCGGTGTTCTCGTGCGACCAGGCGGTGGCGTACGCGCCGTCGCCGCGGGCCTCGCCGCCGTGCTCCTCGCCGCCGTCTCCGCGTTCAACCTGTTCCGCCTCTACGGCGGCGGCGGCGGCGGCCGCAAGAGCAGCGCCGGCGCCGTCTCCGGCAATGGCGCGAACACGTGGTAGGCAAGGCTAGTTTAGCTGCTTCGATGGAGTTTAATTTCTTTGTAGTTTCAGAATTAAATTAAGCGAGACTGGCTCACTGACACGTAATTAAGTTCGTTAAATCGTTGGTAATAACTGTTATGGGCTTATGGCTGTGGATGATAATAATTAAGTCAGATTTGCCGACGACCAAATCGCCTGTTTAATACTCCCTCCCTCCATCCTAAATATAAATAA]
[+] EMBL AK062700 [ACAACGCAACTGAACAACCTCGCCGGTGAGCAGCTAAAGCTAAGCTGAGGTTAGCCATGGCGGCGGCGATGGGGTTGGAGAGGAAGGCGAAGGTGGCGGAGGTGGCGCTGCGGTGCGCGGTGTGCGCCCTGGCGGCGCTGGCGGCGGCGCTGGTGGGCACGGGAAGCCAGACGAGGACCTTCTTCTCGCTGGAGAAGAAGGCCAGGTTCACGGACATGAAGGCACTCGTCCTCCTCGTCGCCGCCCACGGCGCCGCCGCCGTGTACAGCCTGCTCCAGCTGGCGCGGTGCGCCGCGGCCGCGGCGTGGAAAGGCGGCAGCAATGGCGGCGCGGCGGTGGTGGCGTGGTCGGTGTTCTCGTGCGACCAGGCGGTGGCGTACGCGCCGTCGCCGCGGGCCTCGCCGCCGTGCTCCTCGCCGCCGTCTCCGCGTTCAACCTGTTCCGCCTCTACGGCGGCGGCGGCGGCGGCCGCAAGAGCAGCGCCGGCGCCGTCTCCGGCAATGGCGCGAACACGTGGTAGGCAAGGCTAGTTTAGCTGCTTCGATGGAGTTTAATTTCTTTGTAGTTTCAGAATTAAATTAAGCGAGACTGGCTCACTGACACGTAATTAAGTTCGTTAAATCGTTGGTAATAACTGTTATGGGCTTATGGCTGTGGATGATAATAATTAAGTCAGATTTGCCGACGACCAAATCGCCTGTTTAATACTCCCTCCCTCCATCCTAAATATAAATAA]
consensusID : consensus_1422#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence
[GACGACAACGCAACTGAACAACCTCGCCGGTGAGCAGCTAAAGCTAAGCTGAGGTTAGCCATGGCGGCGGCGATGGGGTTGGAGAGGAAGGCGAAGGTGGCGGAGGTGGCGCTGCGGTGCGCGGTGTGCGCCCTGGCGGCGCTGGCGGCGGCGCTGGTGGGCACGGGAAGCCAGACGAGGACCTTCTTCTCGCTGGAGAAGAAGGCCAGGTTCACGGACATGAAGGCACTCGTCCTCCTCGTCGCCGCCCACGGCGCCGCCGCCGTGTACAGCCTGCTCCAGCTGGCGCGGTGCGCCGCGGCCGCGGCGTGGAAAGGCGGCAGCAATGGCGGCGCGGCGGTGGTGGCGTGGTCGGTGTTCTCGTGCGACCAGGCGGTGGCGTACGCGCTGATGGCGGCCGCAAGAGCAGCGCCGGCGCCGTCTCCGGCAATGGCGCGAACACGTGGTAGGCAAGGCTAGTTTAGCTGCTTCGATGGAGTTTAATTTCTTTGTAGTTTCAGAATTAAATTAAGCGAGACTGGCTCACTGACACGTAATTAAGTTCGTTAAATCGTTGGTAATAACTGTTATGGGCTTATGGCTGTGGATGATAATAATTAAGTCAGATTT]
[+] EMBL AK063567 [GACGACAACGCAACTGAACAACCTCGCCGGTGAGCAGCTAAAGCTAAGCTGAGGTTAGCCATGGCGGCGGCGATGGGGTTGGAGAGGAAGGCGAAGGTGGCGGAGGTGGCGCTGCGGTGCGCGGTGTGCGCCCTGGCGGCGCTGGCGGCGGCGCTGGTGGGCACGGGAAGCCAGACGAGGACCTTCTTCTCGCTGGAGAAGAAGGCCAGGTTCACGGACATGAAGGCACTCGTCCTCCTCGTCGCCGCCCACGGCGCCGCCGCCGTGTACAGCCTGCTCCAGCTGGCGCGGTGCGCCGCGGCCGCGGCGTGGAAAGGCGGCAGCAATGGCGGCGCGGCGGTGGTGGCGTGGTCGGTGTTCTCGTGCGACCAGGCGGTGGCGTACGCGCTGATGGCGGCCGCAAGAGCAGCGCCGGCGCCGTCTCCGGCAATGGCGCGAACACGTGGTAGGCAAGGCTAGTTTAGCTGCTTCGATGGAGTTTAATTTCTTTGTAGTTTCAGAATTAAATTAAGCGAGACTGGCTCACTGACACGTAATTAAGTTCGTTAAATCGTTGGTAATAACTGTTATGGGCTTATGGCTGTGGATGATAATAATTAAGTCAGATTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1422#0 ----ACAACGCAACTGAACAACCTCGCCGGTGAGCAGCTAAAGCTAAGCTGAGGTTAGCC 56
consensus_1422#1 GACGACAACGCAACTGAACAACCTCGCCGGTGAGCAGCTAAAGCTAAGCTGAGGTTAGCC 60
********************************************************
consensus_1422#0 ATGGCGGCGGCGATGGGGTTGGAGAGGAAGGCGAAGGTGGCGGAGGTGGCGCTGCGGTGC 116
consensus_1422#1 ATGGCGGCGGCGATGGGGTTGGAGAGGAAGGCGAAGGTGGCGGAGGTGGCGCTGCGGTGC 120
************************************************************
consensus_1422#0 GCGGTGTGCGCCCTGGCGGCGCTGGCGGCGGCGCTGGTGGGCACGGGAAGCCAGACGAGG 176
consensus_1422#1 GCGGTGTGCGCCCTGGCGGCGCTGGCGGCGGCGCTGGTGGGCACGGGAAGCCAGACGAGG 180
************************************************************
consensus_1422#0 ACCTTCTTCTCGCTGGAGAAGAAGGCCAGGTTCACGGACATGAAGGCACTCGTCCTCCTC 236
consensus_1422#1 ACCTTCTTCTCGCTGGAGAAGAAGGCCAGGTTCACGGACATGAAGGCACTCGTCCTCCTC 240
************************************************************
consensus_1422#0 GTCGCCGCCCACGGCGCCGCCGCCGTGTACAGCCTGCTCCAGCTGGCGCGGTGCGCCGCG 296
consensus_1422#1 GTCGCCGCCCACGGCGCCGCCGCCGTGTACAGCCTGCTCCAGCTGGCGCGGTGCGCCGCG 300
************************************************************
consensus_1422#0 GCCGCGGCGTGGAAAGGCGGCAGCAATGGCGGCGCGGCGGTGGTGGCGTGGTCGGTGTTC 356
consensus_1422#1 GCCGCGGCGTGGAAAGGCGGCAGCAATGGCGGCGCGGCGGTGGTGGCGTGGTCGGTGTTC 360
************************************************************
consensus_1422#0 TCGTGCGACCAGGCGGTGGCGTACGCGCCGTCGCCGCGGGCCTCGCCGCCGTGCTCCTCG 416
consensus_1422#1 TCGTGCGACCAGGCGGTGGCGTACGCGCT------------------------------- 389
****************************
consensus_1422#0 CCGCCGTCTCCGCGTTCAACCTGTTCCGCCTCTACGGCGGCGGCGGCGGCGGCCGCAAGA 476
consensus_1422#1 --------------------------------------------GATGGCGGCCGCAAGA 405
* *************
consensus_1422#0 GCAGCGCCGGCGCCGTCTCCGGCAATGGCGCGAACACGTGGTAGGCAAGGCTAGTTTAGC 536
consensus_1422#1 GCAGCGCCGGCGCCGTCTCCGGCAATGGCGCGAACACGTGGTAGGCAAGGCTAGTTTAGC 465
************************************************************
consensus_1422#0 TGCTTCGATGGAGTTTAATTTCTTTGTAGTTTCAGAATTAAATTAAGCGAGACTGGCTCA 596
consensus_1422#1 TGCTTCGATGGAGTTTAATTTCTTTGTAGTTTCAGAATTAAATTAAGCGAGACTGGCTCA 525
************************************************************
consensus_1422#0 CTGACACGTAATTAAGTTCGTTAAATCGTTGGTAATAACTGTTATGGGCTTATGGCTGTG 656
consensus_1422#1 CTGACACGTAATTAAGTTCGTTAAATCGTTGGTAATAACTGTTATGGGCTTATGGCTGTG 585
************************************************************
consensus_1422#0 GATGATAATAATTAAGTCAGATTTGCCGACGACCAAATCGCCTGTTTAATACTCCCTCCC 716
consensus_1422#1 GATGATAATAATTAAGTCAGATTT------------------------------------ 609
************************
consensus_1422#0 TCCATCCTAAATATAAATAA 736
consensus_1422#1 --------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||