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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14238#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1421 fasta sequence
[CACCTCCGCCTCTCTCTCGATCCATCTCCCCCCTCTCTCCTCTCCTCTCTCTCTCCGTTCCCAATCTGCGGAGGCGGAGGCGGAGCTAGGGCGCGGCGTCGCCGGCGAGGAGTTCCGCAGGCGCGGTGTGGACGGGGCTCCTCTGCTTCCGCACACGGCGGGCGGCGACGGCGAGCAGGGTTGGAGGGGCGGCGCGGCGACCTCCTCGTTCCTGCCTTGCCTGCCTCCATCTGGTGTTGGAAATATCATAAGTTTTGGGACAAGCAAGAGAGGACATGGAGCCATCATCACAACCTCAGCCGGCAATTGGTGTTGTTGCTGGTGGATCACAAGTGTACCCTGCATACCGGCCTGCAGCAACAGTGCCTACAGCTCCTGCTGTCATTCCTGCCGGTTCACAGCCAGCACCGTCGTTCCCTGCCAACCCTGATCAACTGAGTGCTCAGCACCAGCTCGTCTATCAGCAAGCCCAGCAATTTCACCAGCAGCTTCAGCAGCAGCAACAGCGTCAACTCCAGCAGTTTTGGGCTGAACGTCTGGTCGATATTGAACAAACTACTGACTTCAAGAACCACAGCTTGCCACTTGCTAGGATAAAGAAGATCATGAAGGCAGATGAGGACGTTCGCATGATCTCCGCAGAGGCTCCTGTGATCTTTGCGAAAGCATGTGAGATATTCATACTGGAGCTGACCCTGAGATCATGGATGCACACGGAGGAGAACAAGCGCCGTACCTTGCAGAAGAATGACATAGCAGCTGCCATCACCAGGACGGATATGTACGATTTCTTGGTAGATATAGTTCCCAGGGATGACTTGAAGGAGGAGGGAGTTGGGCTCCCTAGGGCTGGATTGCCGCCCTTGGGTGTCCCTGCTGACTCATATCCGTATGGCTACTATGTGCCACAGCAGCAGGTCCCAGGTGCAGGAATAGCGTATGGTGGTCAGCAAGGTCATCCGGGGTATCTGTGGCAGGATCCTCAGGAACAGCAGGAAGAGCCTCCTGCAGAGCAGCAAAGTGATTAAGAAGAGTAAATGATCCCTGTGAATTGTCAAGAAGCTTACCACCTGATTCAGAATTTTACTTTTAGCCAGGTTGTCGTCTATTCTGAATTTATGAATAGGATTAGGATTCTCTCATGGTAGTTGCATTTCTGCTGTAGTGGAAAAGGATTTATGACATGAGAGTATGAGACTAATGGGTTTCAGTTACTATACCGTTTCCTGTCAATCCAAAAGTTGGCCTTTGCGAGGCCATTGATATTGAACCTAATGTGGTTGAACTGCCCATGCCAACGTTTGTAAGCTCTGATGTGGGTCATTCTGTATTTCATGTTTGCATGGTTTCATGGAATCTTCTTTGTTTAGACAATGAAAATGTTTTACATTCGTGGCATCTGCCATAAAAAAAAAAAAAAA]
[+] EMBL AK066630 [CACCTCCGCCTCTCTCTCGATCCATCTCCCCCCTCTCTCCTCTCCTCTCTCTCTCCGTTCCCAATCTGCGGAGGCGGAGGCGGAGCTAGGGCGCGGCGTCGCCGGCGAGGAGTTCCGCAGGCGCGGTGTGGACGGGGCTCCTCTGCTTCCGCACACGGCGGGCGGCGACGGCGAGCAGGGTTGGAGGGGCGGCGCGGCGACCTCCTCGTTCCTGCCTTGCCTGCCTCCATCTGGTGTTGGAAATATCATAAGTTTTGGGACAAGCAAGAGAGGACATGGAGCCATCATCACAACCTCAGCCGGCAATTGGTGTTGTTGCTGGTGGATCACAAGTGTACCCTGCATACCGGCCTGCAGCAACAGTGCCTACAGCTCCTGCTGTCATTCCTGCCGGTTCACAGCCAGCACCGTCGTTCCCTGCCAACCCTGATCAACTGAGTGCTCAGCACCAGCTCGTCTATCAGCAAGCCCAGCAATTTCACCAGCAGCTTCAGCAGCAGCAACAGCGTCAACTCCAGCAGTTTTGGGCTGAACGTCTGGTCGATATTGAACAAACTACTGACTTCAAGAACCACAGCTTGCCACTTGCTAGGATAAAGAAGATCATGAAGGCAGATGAGGACGTTCGCATGATCTCCGCAGAGGCTCCTGTGATCTTTGCGAAAGCATGTGAGATATTCATACTGGAGCTGACCCTGAGATCATGGATGCACACGGAGGAGAACAAGCGCCGTACCTTGCAGAAGAATGACATAGCAGCTGCCATCACCAGGACGGATATGTACGATTTCTTGGTAGATATAGTTCCCAGGGATGACTTGAAGGAGGAGGGAGTTGGGCTCCCTAGGGCTGGATTGCCGCCCTTGGGTGTCCCTGCTGACTCATATCCGTATGGCTACTATGTGCCACAGCAGCAGGTCCCAGGTGCAGGAATAGCGTATGGTGGTCAGCAAGGTCATCCGGGGTATCTGTGGCAGGATCCTCAGGAACAGCAGGAAGAGCCTCCTGCAGAGCAGCAAAGTGATTAAGAAGAGTAAATGATCCCTGTGAATTGTCAAGAAGCTTACCACCTGATTCAGAATTTTACTTTTAGCCAGGTTGTCGTCTATTCTGAATTTATGAATAGGATTAGGATTCTCTCATGGTAGTTGCATTTCTGCTGTAGTGGAAAAGGATTTATGACATGAGAGTATGAGACTAATGGGTTTCAGTTACTATACCGTTTCCTGTCAATCCAAAAGTTGGCCTTTGCGAGGCCATTGATATTGAACCTAATGTGGTTGAACTGCCCATGCCAACGTTTGTAAGCTCTGATGTGGGTCATTCTGTATTTCATGTTTGCATGGTTTCATGGAATCTTCTTTGTTTAGACAATGAAAATGTTTTACATTCGTGG ]
[+] EMBL AK105079 [ CCTCCGCCTCTCTCTCGATCCATCTCCCCCCTCTCTCCTCTCCTCTCTCTCTCCGTTCCCAATCTGCGGAGGCGGAGGCGGAGCTAGGGCGCGGCGTCGCCGGCGAGGAGTTCCGCAGGCGCGGTGTGGACGGGGCTCCTCTGCTTCCGCACACGGCGGGCGGCGACGGCGAGCAGGGTTGGAGGGGCGGCGCGGCGACCTCCTCGTTCCTGCCTTGCCTGCCTCCATCTGGTGTTGGAAATATCATAAGTTTTGGGACAAGCAAGAGAGGACATGGAGCCATCATCACAACCTCAGCCGGCAATTGGTGTTGTTGCTGGTGGATCACAAGTGTACCCTGCATACCGGCCTGCAGCAACAGTGCCTACAGCTCCTGCTGTCATTCCTGCCGGTTCACAGCCAGCACCGTCGTTCCCTGCCAACCCTGATCAACTGAGTGCTCAGCACCAGCTCGTCTATCAGCAAGCCCAGCAATTTCACCAGCAGCTTCAGCAGCAGCAACAGCGTCAACTCCAGCAGTTTTGGGCTGAACGTCTGGTCGATATTGAACAAACTACTGACTTCAAGAACCACAGCTTGCCACTTGCTAGGATAAAGAAGATCATGAAGGCAGATGAGGACGTTCGCATGATCTCCGCAGAGGCTCCTGTGATCTTTGCGAAAGCATGTGAGATATTCATACTGGAGCTGACCCTGAGATCATGGATGCACACGGAGGAGAACAAGCGCCGTACCTTGCAGAAGAATGACATAGCAGCTGCCATCACCAGGACGGATATGTACGATTTCTTGGTAGATATAGTTCCCAGGGATGACTTGAAGGAGGAGGGAGTTGGGCTCCCTAGGGCTGGATTGCCGCCCTTGGGTGTCCCTGCTGACTCATATCCGTATGGCTACTATGTGCCACAGCAGCAGGCCCCAGGTGCAGGAATAGCGTATGGTGGTCAGCAAGGTCATCCGGGGTATCTGTGGCAGGATCCTCAGGAACAGCAGGAAGAGCCTCCTGCAGAGCAGCAAAGTGATTAAGAAGAGTAAATGATCCCTGTGAATTGTCAAGAAGCTTACCACCTGATTCAGAATTTTACTTTTAGCCAGGTTGTCGTCTATTCTGAATTTATGAATAGGATTAGGATTCTCTCATGGTAGTTGCATTTCTGCTGTAGTGGAAAAGGATTTATGACATGAGAGTATGAGACTAATGGGTTTCAGTTACTATACCGTTTCCTGTCAATCCAAAAGTTGGCCTTTGCGAGGCCATTGATATTGAACCTAATGTGGTTGAACTGCCCATGCCAACGTTTGTAAGCTCTGATGTGGGTCATTCTGTATTTCATGTTTGCATGGTTTCATGGAATCTTCTTTGTTTAGACAATGAAAATGTTTTACATTCGTGGCATCT ]
[-] EMBL CA762077 [ GCCGTACC TGCAGAAGAATGACATAGCAGCTCCCATCACCAGGAGGGATATGTCCGATTTCTTGGTAGATATAGTTCCCAGGGATGACTTGAAGGAGGAGGGAGTTGGGCTCCCTAGGGCTGGATGGCCGCCCTTGGGTGTCCCTGCTGACTCATATCCGTATGGCTACTATGTGCCACAGCAGCAGGTCCCAGGTGCAGGAATAGCGTATGGTGGTCAGCAAGGTCATCCGGGGTATCTGTGGCAGGATCCTCAGGAACAACAGGAAGAGCCTCCTGCAGAGCAGCAAAGTGATTAAGAAGAGTAAATGATCCCTGTGAATTGTCAAGAAGCTTACCACCTGATTCAGAATTTTACTTTTAGCCAGGTTGTCGTCTATTCTGAATTTATGAATAGGATTAGGATTCTCTCATGGTAGTTGCATTTCTGCTGTAGTGGAAAAGGATTTATGACATGAGAGTATGAGACTAATGGGTTTCAGTTACTATACCGTTTCCTGTCAATCCAAAAGTTGGCCTTTGCGAGGCCATTGATATTGAACCTAATGTGGTTGGACTGCCCATGCCAACGTTTGTAAGCTCTGATGTGGGTCATTCTGTATTTCATGTTTGCATGGTTTCATGGAATCTTCTTTGTTTAGACAATGAAAATGTTTTACATTCGTGGCATCTGCCATAAAAAAAAAAAAAAA]
[+] EMBL CA766282 [ TGGGCTCCCTAGGGCTGGATTGCCGCCCTTGGGTGTCCCTGCTGACTCATATCCGTATGGCTACTATGTGCCACAGCAGCAGGTCCCAGGTGCAGGAATAGCGTATGGTGGTCAGCAAGGTCATCCGGGGTATCTGTGGCAGGATCCTCAGGAACAACAGGAAGAGCCTCCTGCAGAGCAGCAAAGTGATTAAGAAGAGTAAATGATCCCTGTGAATTGTCAAGAAGCTTACCACCTGATTCAGAATTTTACTTTTAGCCAGGTTGTCGTCTATTCTGAATTTATGAATAGGATTAGGATTCTCTCATGGTAGTTGCATTTCTGCTGTAGTGGAAAAGGATTTACGACATGAGAGTATGAGACTAATGGGTTTCAGTTACTATACCGTTTCCTGTCAATCCAAAAGTTGGCCTTTGCGAGGCCATTGATATTGAACCTAATGTGGTTGAACTGCCCATGCCAACGTTTGTAAGCTCTGATGTGGGTCATTCTGTATTTCATGTTTGCATG ]
consensusID : consensus_14238#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1243 fasta sequence
[ACCGCGTCTCCCTCTCTCTCTCTCTCTCCGCCGCCGACGCCGAGGGCTCCACGAGAGGGAGGTGGGCGGCGCGGCCCTTCGCCGGAGGGAGCGCTCTCCGCCGCCGCCGCTCCCGCTCCCGCCGGCGCGGGAGA-TCCGGGCGTCGTCTCTCGGGCCTTTGGCTTTGGACGGACAAGAGCTGACATGGAACCATCCTCACAGCCTCAGCCTGTGATGGGTGTTGCCACTGGTGGGTCACAAG-CATATCCTCCTCCTGCTGCTGCATATCCACCTCAAGCCATGGTTCCTGGAGCTCCTGCTGTTGTTCCTCCTGGCTCACAGCCATCAGCACCATTCCCCACTAATCCAGCTCAACTCAGTGCTCAGCACCAGCTAGTCTACCAACAAGCCCAGCAATTTCATCAGCAGCTGCAGCAACAGCAACAGCAGCAACTCCGTGAGTTCTGGGCTAACCAAATGGAAGAGATTGAGCAAACAACCGACTTCAAGAACCACAGCTTGCCACTCGCAAGGATAAAGAAGATAATGAAGGCTGATGAGGATGTCCGGATGATCTCGGCAGAAGCCCCCGTTGTCTTCGCAAAGGCATGCGAGGTATTCATATTAGAGTTAACATTGAGGTCGTGGATGCACACGGAGGAGAACAAGCGCCGGACCTTGCAGAAGAATGACATTGCAGCTGCCATCACCAGGACTGATATCTATGACTTCTTGGTGGACATAGTTCCCAGGGATGAAATGAAAGAAGAAGGGCTTGGGCTTCCGAGGGTTGGCCTACCGCCTAATGTGGGGGGCGCAGCAGACACATATCCATATTACTACGTGCCAGCGCAGCAGGGGCCTGGAT-CAGGAATGATGTACGGTGGACAGCAAGGTCACCCGGTGACGTATGTGTGGCAGCAGCCTCAAGAGC-AACAGGAAGAGGCCCCTGAAGAGCAGCACTCTCTGCCAGAAAGTAGCTAAAGATGATACAGTGAAGTTGTGACATTGATATACATTGTCCTGTGAACTTAGGGCCTCTAAAACTCAGTGCTCTTGTCAAAACTATTCCCATGATTGTTGGCTGAAACGGGTAATCTGATTAGGTCTTAGGCTTTCCTAATGTTAGTTCTGCTCTGCTATGGCAGCAGTAGAAAAAAAAAAGATTGTGATTTGGTAGGTGATTTGCAACTAATGTAGTAACTGTACCTTACCTTTCATCAGTTTCTAATCCAATACTCAAAAGTGCTGGCAAAAAAAAAAA]
[+] EMBL AU172615 [ACCGCGTCTCTCTCTCTCTCTCTCTCTCCGCCGCCGACGCCGAGGGCTCCACGAGAGGGAGGTGGGCGGCGCGGCCCTTCGCCGGAGGGAGCGCTCTCCGCCGCCGCCGCTCCCGCTCCCGCCGGCGCGGGAGA TCCGGGCGTCGTCTCTCGGGCCTTTGGCTTTGGACGGACAAGAGCTGACATGGAACCATCCTCACAGCCTCAGCCTGTGATGGGTGTTGCCACTGGTGGGTCACAAG CATATCCTCCTCCTGCTGCTGCATATCCACCTCAAGCCATGGTTCCTGGAGCTCCTGCTGTTGTTCCTCCTGGCTCACAGCCATCAGCACCATTCCCCACTAATCCAGCTCAACTCAGTGCTCAGCACCAGCTAGTCTACCAACAAGCCCAGCAATTTCATCAGCAGCTGCAGCAACAGCAACAGCAGCAACTCCGTGAGTTCT ]
[+] EMBL AU068271 [ GCNTCTCCCTCTCTCTCTCTCTCTCCGCCGCCGACGCCGAGGGCTCCACGAGAGGGAGGTGGGCGGCGCGGCCCTTNGCCGGAGGGAGCGCTCTCCGCCGCCGCCGCTCCCGCTCCCGCCGGCGC GGAGANTCCGGGCNTNGTCTCTCGGGCCTTTGGCTTTGGACGGACAAGAGCTGACATGGAACCATCCTCACAGCCTCAGCCTGTAATGGGTGTTGCCACTGGTGGGTCACAAG CATATCCTCCTCCTGCTGCTGCATATCCACCTCAAGCCATGGTTCCTGGAGCTCCTGCT ]
[+] EMBL C72721 [ GCGTCTCCCTCTCTCTCTCTCTCTCCGCCGCCGACGCCGAGGGCTCCACGAGAGGGAGGTGGGCGGCGCGGCCCTTCGCCGGAGGGAGCGCTCTCCGCCGCCGCCGCTCCCGCTCCCGCCGGCGCGGGAGA TCCGGGCGTCGTCTCTCGGGCCTTTGGCTTTGGACGGACAAGAGCTGACATGGAACCATCCTCACAGCCTCAGCCTGTGATGGGTGTTGCCACTGGTGGGTCACAAGNAAAATCCTCCTCCTGCTGCTGCATATCCACCTCAAGCCATGGTTCCTGGAGCTCCTGCTGTTGTTCCTCCTGGCTCACAGCCATCAGCACCATTCCCCACTAATCCAGCTC ACTCAGTGCTCAGCACC ]
[+] EMBL AU197697 [ ACCAGCTAGTCTACCAACAAGCCCAGCAATTTCATCAGCAGCTGCAGCAACAGCAACAGCAGCAACTCCGTGAGTTCTGGGCTAACCAAATGGAAGAGATTGAGCAAACAACCGACTTCAAGAACCACAGCTTGCCACTCGCAAGGATAAAGAAGATAATGAAGGCTGATGAGGATGTCCGGATGATCTCGGCAGAAGCCCCCGTTGTCTTCGCAAAGGCATGCGAGGTATTCATATTAGAGTTAACATTGAGGTCGTGGATGCACACGGAGGAGAACAAGCGCCGGACCTTGCAGAAGAATGACATTGCAGCTGCCATCACCAGGACTGATATCTATGACTTCTTGGTGGACATAGTTCCCAGGGATGAAATGAAAGAAGAAGGGCTTGGGCTTCCGAGGGTTGGCCTACCGCCTAATGTGGGGGGCGCAGCAGACACATATCC ]
[-] EMBL CB660239 [ TAAAGAAGATAATGAAGGCTGATGAGGATGTCCGGATGATCTCGGCAGAAGCCCCCGTTGTCTTCGCAAAGGCATGCGAGGTATTCATATTAGAGTTAACATTGAGGTCGTGGATGCACACGGAGGAGAACAAGCGCCGGACCTTGCAGAAGAATGACATTGCAGCTGCCATCACCAGGACTGATATCTATGACTTCTTGGTGGACATAGTTCCCAGGGATGAAATGAAAGAAGAAGGGCTTGGGCTTCCGAGGGTTGGCCTACCGCCTAATGTGGGGGGCGCAGCAGACACATATCCATATTACTACGTGCCAGCGCAGCAGGGGCCTGGAT CAGGAATGATGTACGGTGGACAGCAAGGTCACCCGGTGACGTATGTGTGGCAGCAGCCTCAAGAGC AACAGGAAGAGGCCCCTGAAGAGCAGCACTCTTTGCCAGAAAGTAGCTAAAGATGATACAGTGAAGTTGTGACATTGATATACATTGTCCTGTGAACTTAGGGCCTTTAAAACTCAGTGCTCTTGTCAAAACTATTCCCATGATTGTTGGCTGAAACGGGTAATCTGATTAGGTCTTAGGCTTTCCTAATGTTAGTTCTGCTTTGCTATGGCAGCAGTAGAAAAAAAAAAGATTGTGATTTGGTAGGTGATTTGCAACTAATGTAGTAACTNTACCTTACCTTTCATCAn ]
[+] EMBL BE530941 [ AGAACAAGCGCCGGACCTTGCAGAAGAATGACATTGCAGCTGCCATCACCAGGACTGATATCTATGACTTCTTGGTGGACATAGTTCCCAGGGATGAAATGAAAGAAGAAGGGCTTGGGCTTCCGAGGGTTGGCCTACCGCCTAATGTGGGGGGCGCAGCAGACACATATCCATATTACTACGTGCCAGCGCAGCAGGGGCCTGGAT CAGGAATGATGTACGGTGGACAGCAAGGTCACCCGGTGACGTATGTGTGGCAGCAGCCTCAAGAGC AACAGGAAGAGGCCCCTGAAGAGCAGCACTCTCTGCCAGAAAGTAGCTAAAGATGATACAGTGAAGTTGTGACATTGATATACATTGTCCTGTGAACTTAGGGCCTCTAAAACTCAGTGCTCTTGTCAAAACTATTCCCATGATTGTTGGCTGAAACGGGTAATCTGATTAGGTCTTAGGCTTTCCTA ]
[+] EMBL AU068270 [ AAGCGCCGGCCCTTGCAGAAGAATGCCATTGCAGCTGCCATCACCAGGACTGATATCTATGNCTTCTTGGTGGACATAGTTCCCAGGNATGAAATGAAAGAAGAAGGNCTTGGGCTTCCGAGGGTTGGCNTACCGCCTAATNTGGGGGGCGCAGCAGACACATATCCATATTACTACGTGCCAGCGCAGCAGGGGCCTGGATCCAGGAATGATGTACGGTGGACAGCAAGGTCNCCCGGTGACNTATGTGTGGCAGCAGCCTCAAGAGCNACCAGGAAGAGGCCCCTGAAGAGCAGCACTCTCTGCCAGAAAGTAGCTAAAGATGATACAGTGAAGTTGTGACATTGATATACATTGTCCTGTGAACTTAGGGCCTCTAAAACTCAGTGCTCTTGTCNAAACTATTCCCATGATTGTTGGCTGAAACGGGTAATCTGATTAGGTCTTAGGCTTTCCTAATGTTAGTTCTGCTCTGCTATGGCAGCAGTAGAAAAAAAAAAGATTGTGATTTGGTAGGTGATTTGCAACTAATGTAGTAACTGTACCTTACCTTTCATCAGTTTCTAATCCAATACTCAAAAGTGCTGGCAAAAAAAAAAA]
[+] EMBL AU172616 [ TACTACGTGCCAGCGCAGCAGGGGCCTGGAT CAGGAATGATGTACGGTGGACAGCAAGGTCACCCGGTGACGTATGTGTGGCAGCAGCCTCAAGAGC AACAGGAAGAGGCCCCTGAAGAGCAGCACTCTCTGCCAGAAAGTAGCTAAAGATGATACAGTGAAGTTGTGACATTGATATACATTGTCCTGTGAACTTAGGGCCTCTAAAACTCAGTGCTCTTGTCAAAACTATTCCCATGATTGTTGGCTGAAACGGGTAATCTGATTAGGTCTTAGGCTTTCCTAATGTTAGTTCTGCTCTGCTATGGCAGCAGTAGAAAAAAAAAAGATTGTGATTTGGTAGGTGATTTGCAACTAATGTAGTAACTGTACCTTACCTTTCATCAGTTTCTAATCCAATACTCAAAAGTGCTGGCAAAAAAAAA ]
consensusID : consensus_14238#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 734 fasta sequence
[ATAATGAACGTTGAAGAGGATGTCCGGATGATCTCGGCAGAAGCCCCCGTTGTCTTCGC-AAAGG-CATG-CGAGG-TATTCATATTACAG-TTAACATTGAGGGCGGGGATGCA-CACGGA-GGAGAACAAGCGCCGGACCTTGCAAAAGAATGACATTGCAGCTGCCA-TCACCAGGACTGATATCTATGACTTCTTGGTGGACATAGTT-CCCAGGGATGAAATGAAAGAAGAAGGGCTTGGGCTTCCGAGGGTTGGCCTACCGCCTAATGTGGGGGGCGCAGCAGACACATATCCATATTACTACGTGCCATCGCAGCAGGGGCCTGGATCAGGAATGATGTACGGTGGACAGCAAGGTCACCCGGTGACGTATGTGTGGCAGCAGCCTCAAGAGCAACAGGAAGAGGCCCCTGAAGAGCAGCACTCTCTGCCAGAAAGTAGCTAAAGATGATACAGTGAAGTTGTGACATTGATATACATTGTCCTGTGAACTTAGGGCCTCTAAAACTCAGTGCTCTTGTCAAAACTATTCCCATGATTGTTGGCTGAAACGGGTAATCTGATTACGTCTTAGGCTTTCCTAATGTTAGTTCTGCTCTGCTATGGCAGCAGTAGAAAAAAAAAAGATTGTGATTTGGTACGTGATTTGCAACTAATGTAGTAACTGTACCTTACCTTTCATCAGTTTCTAATCCAATACTCAAAAGTGCTGGCATGTGGAGACCCTTGTATGAAAAA]
[+] EMBL CB660240 [ATAATGAACGTTGAAGAGGATGTCCGGATGATCTCGGCAGAAGCCCCCGTTGTCTTCGC AAAGG CATG CGAGG TATTCATATTACAG TTAACATTGAGGGCGGGGATGCA CACGGA GGAGAACAAGCGCCGGACCTTGCAAAAGAATGACATTGCAGCTGCCA TCACCAGGACTGATATCTATGACTTCTTGGTGGACATAGTT CCCAGGGATGAAATGAAAGAAGAAGGGCTTGGGCTTCCGAGGGTTGGCCTACCGCCTAATGTGGGGGGCGCAGCAGACACATATCCATATTACTACGTGCCATCGCAGCAGGGGCCTGGATCAGGAATGATGTACGGTGGACAGCAAGGTCACCCGGTGACGTATGTGTGGCAGCAGCCTCAAGAGCAACAGGAAGAGGCCCCTGAAGAGCAGCACTCTCTGCCAGAAAGTAGCTAAAGATGATACAGTGAAGTTGTGACATTGATATACATTGTCCTGTGAACTTAGGGCCTCTAAAACTCAGTGCTCTTGTCAAAACTATTCCCATGATTGTTGGCTGAAACGGGTAATCTGATTACGTCTTAGGCTTTCCTAATGTTAGTTCTGCTCTGCTATGGCAGCAGTAGAAAAAAAAAAGATTGTGATTTGGTACGTGATTTGCAACTAATGTAGTAACTGTACCTTACCTTTCATCAGTTTCTAATCCAATACTCAAAAGTGCTGGCATGTGGAGACC ]
[+] EMBL AU094053 [ CCGTTGTCTTCGCAAAAGGCCTTGCCGAGGTTATTCATATTAGAGTTTACCNTTGAGGTCGTGGATGCACCACGGAGGGAGAACAAGCNCCGGACCTTGCAGAAGAATGACATTGCAGCTGCCATTCACCAGGACTGATATCTATGACTTCTTGGTGGCCATAGTTCCCCAGGGATG AATGAAAGAAGAAGGGCTTGGGCTTCCGAGGGTTGGCCTACCGCCTAATGTGGGGGGCGCAGCAGACACATATCCATATTACTACGTGCCAGCGCAGCAGGGGCCTGGATCAGGAATGATGTACGGTGGACAGCAAGGTCACCCGGTGACGTATGTGTGGCAGCAGCCTCAAGAGCAACAGGAAGAGGCCCCTGAAGAGCAGCACTCTCTGCCAGAAAGTAGCTAAAGATGATNCAGTGAAGTTGTGACATTGATATACATTGTCCTGTGAACTTAGGGCCTCTAAAACTCAGTGCTCTTGTCAAAACTATTCCCATGATTGTTGGCTGAAACGGGTAATCTGATTAGGTCTTAGGCTTTCCTAATGTTAGTTCTGCTCTGCTATGGCAGCAGTAGAAAAAAAAAAGATTGTGATTTGGTAGGTGATTTGCAACTAATGTAGTAACTGTACCTTACCTTTCATCAGTTTCTAATCCAATACTCAAAAGTGCTGGCATGTGGAGACCCTTGTATGAAAAA]
consensusID : consensus_14238#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence
[TTCGGCACGAGCAGAAGCCCCCGTTGTCTTCGCAAAGGCATGCGAGGTATTCATATTAGAGTTAACATTGAGGTCGTGGATGCACACGGAGGAGAACAAGCGCCGGACCTTGCAGAAGAATGACATTGCAGCTGCCATCACCAGGACTGATATCTATGACTTCTTGGTGGACATAGTTCCCAGGGATGAAATGAAAGAAGAAGGGCTTGGGCTTCCGAGGGTTGGCCTACCGCCTAATGTGGGGGGCGCANCANACACATATCCATATTACTACGTGCCANCGCACANGGGCCTGGATCTT]
[+] EMBL AA754650 [TTCGGCACGAGCAGAAGCCCCCGTTGTCTTCGCAAAGGCATGCGAGGTATTCATATTAGAGTTAACATTGAGGTCGTGGATGCACACGGAGGAGAACAAGCGCCGGACCTTGCAGAAGAATGACATTGCAGCTGCCATCACCAGGACTGATATCTATGACTTCTTGGTGGACATAGTTCCCAGGGATGAAATGAAAGAAGAAGGGCTTGGGCTTCCGAGGGTTGGCCTACCGCCTAATGTGGGGGGCGCANCANACACATATCCATATTACTACGTGCCANCGCACANGGGCCTGGATCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14238#1 ------------------------------------------------------------
consensus_14238#2 ------------------------------------------------------------
consensus_14238#3 ------------------------------------------------------------
consensus_14238#0 CACCTCCGCCTCTCTCTCGATCCATCTCCCCCCTCTCTCCTCTCCTCTCTCTCTCCGTTC 60
consensus_14238#1 --------------------------------ACCGCGTCTCCCTCTCTCTCTCTCTCTC 28
consensus_14238#2 ------------------------------------------------------------
consensus_14238#3 ------------------------------------------------------------
consensus_14238#0 CCAATCTGCGGAGGCGGAGGCGGAGCTAGGGCGCGGCGTCGCCGGCGAGGAGTTCCGCAG 120
consensus_14238#1 CGCCGCCGACGCCGAGGGCTCCACGAGAGGGAGGTGGGCGGC--GCGGCCCTTCGCCGGA 86
consensus_14238#2 ------------------------------------------------------------
consensus_14238#3 ------------------------------------------------------------
consensus_14238#0 GCGCGGTGTGGACGGGGCTCCTCTGCTTCCGCACACGGCGGGCGGCGACGGCGAGCAGGG 180
consensus_14238#1 GGGAGCGCTCTCCGCCGCCGCCGCTCCCGCTCCCGCCGGCGCGGGAGATCCGGGCGTCGT 146
consensus_14238#2 ------------------------------------------------------------
consensus_14238#3 ------------------------------------------------------------
consensus_14238#0 TTGGAGGGGCGGCGCGGCGACCTCCTCGTTCCTGCCTTGCCTGCCTCCATCTGGTGTTGG 240
consensus_14238#1 CTCTCGGGCCTTTGGCTTTGGACGGACAAGAGCTGACATGGAACCATCCTCACAGCCTCA 206
consensus_14238#2 ------------------------------------------------------------
consensus_14238#3 ------------------------------------------------------------
consensus_14238#0 AAAT--ATCATAAGTTTTGGGACAAGCAAGAGAGGACATGGAGCCATCATCACAACCTCA 298
consensus_14238#1 GCCTGTGATGGGTGTTGCCACTGGTGGGTCACAAGCATATCCTCCTCCTGCTGCTGCATA 266
consensus_14238#2 ------------------------------------------------------------
consensus_14238#3 ------------------------------------------------------------
consensus_14238#0 GCCGGCAATTGGTGTTGTTGCTGGTGGATCACAAGTGTACCCT------------GCATA 346
consensus_14238#1 TCCACCTCAAGCCATGGTTCCTGGAGCTCCTGCTGTTGTTCCTCCTGGCTCACAGCCATC 326
consensus_14238#2 ------------------------------------------------------------
consensus_14238#3 ------------------------------------------------------------
consensus_14238#0 CCGGCCTGCAGCAACAGTGCCTACAGCTCCTGCTGTCATTCCTGCCGGTTCACAGCCAGC 406
consensus_14238#1 AGCACCATTCCCCACTAATCCAGCTCAACTCAGTGCTCAGCACCAGCTAGTCTACCAACA 386
consensus_14238#2 ------------------------------------------------------------
consensus_14238#3 ------------------------------------------------------------
consensus_14238#0 ACCGTCGTTCCCTGCCAACCCTGATCAACTGAGTGCTCAGCACCAGCTCGTCTATCAGCA 466
consensus_14238#1 AGCCCAGCAATTTCATCAGCAGCTGCAGCAACAGCAACAGCAGCAACTCCGTGAGTTCTG 446
consensus_14238#2 ------------------------------------------------------------
consensus_14238#3 ------------------------------------------------------------
consensus_14238#0 AGCCCAGCAATTTCACCAGCAGCTTCAGCAGCAGCAACAGCGTCAACTCCAGCAGTTTTG 526
consensus_14238#1 GGCTAACCAAATGGAAGAGATTGAGCAAACAACCGACTTCAAGAACCACAGCTTGCCACT 506
consensus_14238#2 ------------------------------------------------------------
consensus_14238#3 ------------------------------------------------------------
consensus_14238#0 GGCTGAACGTCTGGTCGATATTGAACAAACTACTGACTTCAAGAACCACAGCTTGCCACT 586
consensus_14238#1 CGCAAGGATAAAGAAGATAATGAAGGCTGATGAGGATGTCCGGATGATCTCGGCAGAAGC 566
consensus_14238#2 ----------------ATAATGAACGTTGAAGAGGATGTCCGGATGATCTCGGCAGAAGC 44
consensus_14238#3 ------------------------------------------TTCGGCACGAGCAGAAGC 18
consensus_14238#0 TGCTAGGATAAAGAAGATCATGAAGGCAGATGAGGACGTTCGCATGATCTCCGCAGAGGC 646
* ***** **
consensus_14238#1 CCCCGTTGTCTTCGCAAAGGCATGCGAGGTATTCATATTAGAGTTAACATTGAGGTCGTG 626
consensus_14238#2 CCCCGTTGTCTTCGCAAAGGCATGCGAGGTATTCATATTACAGTTAACATTGAGGGCGGG 104
consensus_14238#3 CCCCGTTGTCTTCGCAAAGGCATGCGAGGTATTCATATTAGAGTTAACATTGAGGTCGTG 78
consensus_14238#0 TCCTGTGATCTTTGCGAAAGCATGTGAGATATTCATACTGGAGCTGACCCTGAGATCATG 706
** ** **** ** ** ***** *** ******** * ** * ** **** * *
consensus_14238#1 GATGCACACGGAGGAGAACAAGCGCCGGACCTTGCAGAAGAATGACATTGCAGCTGCCAT 686
consensus_14238#2 GATGCACACGGAGGAGAACAAGCGCCGGACCTTGCAAAAGAATGACATTGCAGCTGCCAT 164
consensus_14238#3 GATGCACACGGAGGAGAACAAGCGCCGGACCTTGCAGAAGAATGACATTGCAGCTGCCAT 138
consensus_14238#0 GATGCACACGGAGGAGAACAAGCGCCGTACCTTGCAGAAGAATGACATAGCAGCTGCCAT 766
*************************** ******** *********** ***********
consensus_14238#1 CACCAGGACTGATATCTATGACTTCTTGGTGGACATAGTTCCCAGGGATGAAATGAAAGA 746
consensus_14238#2 CACCAGGACTGATATCTATGACTTCTTGGTGGACATAGTTCCCAGGGATGAAATGAAAGA 224
consensus_14238#3 CACCAGGACTGATATCTATGACTTCTTGGTGGACATAGTTCCCAGGGATGAAATGAAAGA 198
consensus_14238#0 CACCAGGACGGATATGTACGATTTCTTGGTAGATATAGTTCCCAGGGATGACTTGAAGGA 826
********* ***** ** ** ******** ** ***************** **** **
consensus_14238#1 AGAAGGGCTTGGGCTTCCGAGGGTTGGCCTACCGCCTAATGTGGGGGGCGCAGCAGACAC 806
consensus_14238#2 AGAAGGGCTTGGGCTTCCGAGGGTTGGCCTACCGCCTAATGTGGGGGGCGCAGCAGACAC 284
consensus_14238#3 AGAAGGGCTTGGGCTTCCGAGGGTTGGCCTACCGCCTAATGTGGGGGGCGCANCANACAC 258
consensus_14238#0 GGAGGGAGTTGGGCTCCCTAGGGCTGGATTGCCGCC---CTTGGGTGTCCCTGCTGACTC 883
** ** ******* ** **** *** * ***** **** * * * * ** *
consensus_14238#1 ATATCCATAT---TACTACGTGCCAGCGCAGCAGGGGCCTGGATCAGGAATGATGTACGG 863
consensus_14238#2 ATATCCATAT---TACTACGTGCCATCGCAGCAGGGGCCTGGATCAGGAATGATGTACGG 341
consensus_14238#3 ATATCCATAT---TACTACGTGCCANCGCA-CANGGGCCTGGATCTT------------- 301
consensus_14238#0 ATATCCGTATGGCTACTATGTGCCACAGCAGCAGGTCCCAGGTGCAGGAATAGCGTATGG 943
****** *** ***** ****** *** ** * ** ** *
consensus_14238#1 TGGACAGCAAGGTCACCCGGTGACGTATGTGTGGCAGCAGCCTCAAGAGCAACAGGAAGA 923
consensus_14238#2 TGGACAGCAAGGTCACCCGGTGACGTATGTGTGGCAGCAGCCTCAAGAGCAACAGGAAGA 401
consensus_14238#3 ------------------------------------------------------------
consensus_14238#0 TGGTCAGCAAGGTCATCCGGG---GTATCTGTGGCAGGATCCTCAGGAACAGCAGGAAGA 1000
consensus_14238#1 GGCCCCTGAAGAGCAGCACTCTCTGCCAGAA-AGTAGCTAAAGATGATACAGTG------ 976
consensus_14238#2 GGCCCCTGAAGAGCAGCACTCTCTGCCAGAA-AGTAGCTAAAGATGATACAGTG------ 454
consensus_14238#3 ------------------------------------------------------------
consensus_14238#0 GCCTCCTGCAGAGCAGCAAAGTGATTAAGAAGAGTAAATGATCCCTGTGAATTGTCAAGA 1060
consensus_14238#1 AAGTTGTGACATTGATATACATTGTCCTGTGAACTTAG--GGCCTCTA----AAACTCAG 1030
consensus_14238#2 AAGTTGTGACATTGATATACATTGTCCTGTGAACTTAG--GGCCTCTA----AAACTCAG 508
consensus_14238#3 ------------------------------------------------------------
consensus_14238#0 AGCTTACCACCTGATTCAGAATTTTACTTTTAGCCAGGTTGTCGTCTATTCTGAATTTAT 1120
consensus_14238#1 TGCTCTTGTCAAAACTATTCCCATGATTGTTG-------GCTGAAACGGGTAATCTGATT 1083
consensus_14238#2 TGCTCTTGTCAAAACTATTCCCATGATTGTTG-------GCTGAAACGGGTAATCTGATT 561
consensus_14238#3 ------------------------------------------------------------
consensus_14238#0 GAATAGGATTAGGATT-CTCTCATGGTAGTTGCATTTCTGCTGTAGTGGAAAAGGATTTA 1179
consensus_14238#1 AGGTCTTAGGCTTTCCTAATGTTAGTTCTGCTCTGCTATGGCAGCAGTAGAAAAAAAAAA 1143
consensus_14238#2 ACGTCTTAGGCTTTCCTAATGTTAGTTCTGCTCTGCTATGGCAGCAGTAGAAAAAAAAAA 621
consensus_14238#3 ------------------------------------------------------------
consensus_14238#0 TGACATGAGAGTATGAGACTAATGGGTTTCAGTTACTATACCGTTTCCTGTCAATCCAAA 1239
consensus_14238#1 GATTGTGATTTGGTAGGTGATT-----TGCAACTAATGTAGT--AACTGTACCT--TACC 1194
consensus_14238#2 GATTGTGATTTGGTACGTGATT-----TGCAACTAATGTAGT--AACTGTACCT--TACC 672
consensus_14238#3 ------------------------------------------------------------
consensus_14238#0 AGTTGGCCTTTGCGAGGCCATTGATATTGAACCTAATGTGGTTGAACTGCCCATGCCAAC 1299
consensus_14238#1 TTTCATCAGTTTCTA--------ATCCAATACT-CAAAAGTGCTGGCAAAAAAAAAAA-- 1243
consensus_14238#2 TTTCATCAGTTTCTA--------ATCCAATACT-CAAAAGTGCTGGCATGTGGAGACCCT 723
consensus_14238#3 ------------------------------------------------------------
consensus_14238#0 GTTTGTAAGCTCTGATGTGGGTCATTCTGTATTTCATGTTTGCATGGTTTCATGGAATCT 1359
consensus_14238#1 ------------------------------------------------------------
consensus_14238#2 TGTATGAAAAA------------------------------------------------- 734
consensus_14238#3 ------------------------------------------------------------
consensus_14238#0 TCTTTGTTTAGACAATGAAAATGTTTTACATTCGTGGCATCTGCCATAAAAAAAAAAAAA 1419
consensus_14238#1 --
consensus_14238#2 --
consensus_14238#3 --
consensus_14238#0 AA 1421
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||