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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14311#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1177 fasta sequence
[GAGAAAAGGGAAGATACAAGTGTCATCCCGCATCCAACAACCATGGACTCCTTGTATGATATCTCCTGCTTTGCTGCTGGTCTTGCAGGCAACATCTTTGCGCTTGCTCTCTTCCTGTCGCCAGTGACGACGTTTAAGAGGATCCTGAAGGCCAAATCGACCGAGCGATTCGACGGGCTCCCTTACCTGTTCTCGCTGCTGAATTGCCTCATCTGCCTGTGGTATGGACTTCCCTGGGTCGCCGATGGCAGGCTGCTCGTCGCTACCGTCAACGGCATT-GG-AGCGGTGTTCCAGCTCGCCTAC-ATTTGCCTCTTC-ATCTTCTACGCGGACAGCAGGAAGACGAGGATGAAGATCATAGGGCTCTTGGTGCTGGTAGTTTGC-GGGTTTGCGCTAGTTTC-ACATGCGAGCGTC-TTTTTCTTTGATCAACCGCTTCGGCAGCAGTTTGTGGGAGCTGTGAGCATGGCTTCGCTGATCTCCATGTTCGCTTCTCCGTTAGC-TGT-CATGGGAGTTGTGATT-CGGTCAGAGTCTGTGGAGTTCATG-CCGTTCTATCTGTCACTCTCTACGTTCTTGATGAGCGCCAGTTTTGCATTGTATGGGTTGCTGCTGCGAGATTTCTTCATTTATTTCCCTAATGGGCTTGGACTTATCCTGGGAGCAATG-CAGCTGGCGCTCTACGCTTACTACAGCAGAAAATGGAGAGGCCA-GGATTCATCTGCA-CCGTTGCTGCTCGCATGATC-AAAACCGGAGTGAATGATTGATCGATCAGCTGGTTTTGCCATGGTTTGGATTCTTGAAAGAGTGGGTTTATGGTGAATTGTACAGTTTTGGCTCAGTCTTCACATGTTGGTACTGGAAGCTGTACTTCAAACTGCATTCTTCAAACATGTTGGAAAGTTTTGCACACCAGGGGGGCAAATGATGGA-TTTTTTTTAATTTGATTCCCTCCTTTTCCTTGAATACTTGGTGTGCAAAATTATTTCAGCTATGCACATTGAGCCTCACTTCTTGTTATCAATTATGACATGTCACATATGTATAAGTTGCGATGATAGTTTTGTTTCGTTGCTGTTTGTAAACTGCAATATTCTTCTCGCCAAACTGTGTGAACAACAAATCAATGGCCACGTCATATATGTACAAGTTGAGATGATAAAAAAAAAATAAAAAAAAAAAAAAA]
[+] EMBL AK059965 [GAGAAAAGGGAAGATACAAGTGTCATCCCGCATCCAACAACCATGGACTCCTTGTATGATATCTCCTGCTTTGCTGCTGGTCTTGCAGGCAACATCTTTGCGCTTGCTCTCTTCCTGTCGCCAGTGACGACGTTTAAGAGGATCCTGAAGGCCAAATCGACCGAGCGATTCGACGGGCTCCCTTACCTGTTCTCGCTGCTGAATTGCCTCATCTGCCTGTGGTATGGACTTCCCTGGGTCGCCGATGGCAGGCTGCTCGTCGCTACCGTCAACGGCATT GG AGCGGTGTTCCAGCTCGCCTAC ATTTGCCTCTTC ATCTTCTACGCGGACAGCAGGAAGACGAGGATGAAGATCATAGGGCTCTTGGTGCTGGTAGTTTGC GGGTTTGCGCTAGTTTC ACATGCGAGCGTC TTTTTCTTTGATCAACCGCTTCGGCAGCAGTTTGTGGGAGCTGTGAGCATGGCTTCGCTGATCTCCATGTTCGCTTCTCCGTTAGC TGT CATGGGAGTTGTGATT CGGTCAGAGTCTGTGGAGTTCATG CCGTTCTATCTGTCACTCTCTACGTTCTTGATGAGCGCCAGTTTTGCATTGTATGGGTTGCTGCTGCGAGATTTCTTCATTTATTTCCCTAATGGGCTTGGACTTATCCTGGGAGCAATG CAGCTGGCGCTCTACGCTTACTACAGCAGAAAATGGAGAGGCCA GGATTCATCTGCA CCGTTGCTGCTCGCATGATC AAAACCGGAGTGAATGATTGATCGATCAGCTGGTTTTGCCATGGTTTGGATTCTTGAAAGAGTGGGTTTATGGTGAATTGTACAGTTTTGGCTCAGTCTTCACATGTTGGTACTGGAAGCTGTACTTCAAACTGCATTCTTCAAACATGTTGGAAAGTTTTGCACACCAGGGGGGCAAATGATGGATTTTTTTTTAATTTGATTCCCTCCTTTTCCTTGAATACTTGGTGTGCAAAATTATTTCAGCTATGCACATTGAGCCTCACTTCTTGTTATCAATTATGACATGTCACATATGTATAAGTTGCGATGATAGTTTTGTTTCGTTGCTGTTTGTAAACTGCAATATTCTTCTCGCCAAACTGTGTGAACAACAAATCAATGGCCACGTCATATATGTACAAG ]
[+] EMBL CF309718 [ GAAAAGGGAAGATACAAGTGTCATCCCGCATCCAACAACCATGGACTCCTTGTATGATATCTCCTGCTTTGCTGCTGGTCTTGCAGGCAACATCTTTGCGCTTGCTCTCTTCCTGTCGCCAGTGACGACGTTTAAGAGGATCCTGAAGGCCAAATCGACCGAGCGATTCGACGGGCTCCCTTACCTGTTCTCGCTGCTGAATTGCCTCATCTGCCTGTGGTATGGACTTCCCTGGGTCGCCGATGGCAGGCTGCTCGTCGCTACCGTCAACGGCATTGGG AGCGGTGTTCCAGCTCGCCTAC ATTTGCCTCTTC ATCTTCTACGCGGACAGCAGGAAGACGAGGATGAAGATCATAGGGCACTTGGTGCTGGTAGTTTGC GGGTTTGCGCTAGTTTC ACATGCGAGCGTC TTTTTCTTTGATCAACCGCTTCGGCAGCAGTTTGTGGGA ]
[+] EMBL CF292771 [ AGGGAAGATACAAGTGTCATCCCGCATCCAACAACCATGGACTCCTTGTATGATATCTCCTGCTTTGCTGCTGGTCTTGCAGGCAACATCTTTGCGCTTGCTCTCTTCCTGTCGCCAGTGACGACGTTTAAGAGGATCCTGAAGGCCAAATCGACCGAGCGATTCGACGGGCTCCCTTACCTGTTCTCGCTGCTGAATTGCCTCATCTGCCTGTGGTATGGACTTCCCTGGGTCGCCGATGGCAGGCTGCTCGTCGCTACCGTCAACGGCATT GG AGCGGTGTTCCAGCTCGCCTAC ATTTGCCTCTTC ATCTTCTACGCGGACAGCAGGAAGACGAGGATGAAGATCATAGGGCTCTTGGTGCTGGTAGTTTGC GGGTTTGCGCTAGTTTC ACATGCGAGCGTC TTTTTCTTTGATCAACCGCTTCGGCAGCAGTTTGTGGGAGCTGTGAGCATGGCTTCGCTGATCTCCATGTTCGCTTCTCCGTTAGCTTGT CATGGGAGTTGTGATT CGATCAGAGTCTGTGGAGTTCATG CCGTTCTATCTGTCACTCTCTACGTTCTTGATGAGCGCCAGTTTTGCATTGTATGGGTTGCTGCTGCGAGATTTCTTCATTTATTTCCCTAGTGGGCTTG ]
[+] EMBL CF293463 [ AGATACAAGTGTCATCCCGCATCCAACAACCATGGACTCCTTGTATGATATCTCCTGCTTTGCTGCTGGTCTTGCAGGCAACATCTTTGCGCTTGCTCTCTTCCTGTCGCCAGTGACGACGTTTAAGAGGATCCTGAAGGCCAAATCGACCGAGCGATTCGACGGGCTCCCTTACCTGTTCTCGCTGCTGAATTGCCTCATCTGCCTGTGGTATGGACTTCCCTGGGTCGCCGATGGCAGGCTGCTCGTCGCTACCGTCAACGGCATT GG AGCGGTGTTCCAGCTCGCCTAC ATTTGCCTCTTC ATCTTCTACGCGGACAGCAGGAAGACGAGGATGAAGATCATAGGGCTCTTGGTGCTGGTAGTTTGC GGGTTTGCGCTAGTTTC ACATGCGAGCGTC TTTTTCTTTGATCAACCGCTTCGGCAGCAGTT ]
[+] EMBL OSS11451A [ ACAAGTGTCATCCCGCATCCAACAACCATGGACTCCTTGTATGATATCTCCTGCTTTGCTGCTGGTCTTGCAGGCAACATCTTTGCGCTTGCTCTCTTCCTGTCGCCAGTNACGACGTTTAAGAGGATCCTGAAGGCCAAATCGACCGAGCGATTCGACGGGCTCCCTTACCTGTTCTCGCTGCTGAATTGCCTCATCTGCCTGTGGTATGGACTTCCCTGGGTCGCCGATGGCANGCTGCTCGTCGCTACCGTCAACGGCATT NG AGCGGTGTTCCAGCTCGNCTACAAATTGCCTCTTCAATCTTCTACGCGGACAACAGGga ]
[+] EMBL OSC7871 [ GTGTCATCCCGNATCCAACAACCATGGACTCCTTGTATGATATCTCCTGCTTTGCTGCTGGTCTTGCAGGCAACATCTTTGCGCTTGCTCTCTTCCTGTCGCCAGTGACGACGTTTAANAGGATCCTGAAGGCCAAATCGACCGAGCGATTCGACGGGCTCCCTTACCTGTTCTCGCTGCTGAATTGCCTCATCTGCCTGTGGTATGGACTTCCCTGGGTCGNCGATGGAAGGCTGCTCGTCGCTACCGTCAACGGCATT GGAAGCGGTGTTCCAGCTCGCCTAC ATTTGCCTCTTC ATCTTCTACGCGGACAGAAGGAAGACGAGGATGAAGATCATAGGGCTCTTGGTGCTGGTAGTTTGCGGGGTTTTCGCTAATTTCAAAATGCGAGCGTCTTTTTTCTTTGATna ]
[+] EMBL OSC6141 [ GTCATCCCGCATCCAACAACCATGGACTCCTTGTATGATATCTGCTGCTTTGCTGCTGGTCTTGCAGGCAACATCTTTGCGCTTGCTCTCTTCCTGTCGCCAGTGACGACGTTTAANAGGATCCTGAAGGCCAAATCGACCGAGCGATTCGACGGGCTCCCTTACCTGTTCTCGCTGCTGAATTGCCTCATCTGCCTGTGGTATGGACTTCCCTGGGTCGCCGATGGCAGGCTGCTCGTCGCTACCGTCAACGGCATT NG AGCGGTGTTCCAGCTCGCCTAC ATTTGCCTCTTC ATCTTCTACGCGGACAACAGGAAGACGAGG ]
[+] EMBL CA766649 [ ACC TGGACTCCTTGTATGATATCTCCTGCTTTGCTGCTGGTCTTGCAGGCAACATCTTTGCGCTTGCTCTCTTCCTGTCGCCAGTGACGACGTTTAAGAGGATCCTGAAGGCCAAATCGACCGAGCGATTCGACGGGCTCCCTTACCTGTTCTCGCTGCTGAATTGCCTCATCTGCCTGTGGTATGGACTTCCCTGGGTCGCCGATGGCAGGCTGCTCGTCGCTACCGTCAACGGCATT GG AGCGGTGTTTCAGCTCGCCTAC ATTTGCCTCTTC ATCTTCTACGCGGACAGCAGGAAGACGAGGATGAAGATCATAGGGCTCTTGGTGCTGGTAGTTTGC GGGTTTGCGCTAGTTTC ACATGCGAGCGTC TTTTTCTTTGATCAACCGCTTCGGCAGCAGTTTGTGGGAGCTGTGAGCATGGCTTCGCTGATCTCCATGTTCGCTTCTCCGTTAGC TGT CATGGGAGTTGTGATT CGGTCAGAGTCTGTGGAGTTCATG CCGTTCTATCTGTCACTCTCTACGTTCTTGATGAGCGCCAGTTTTGCATTGTATGGGTTGCTGCTGCGAGATTTCTTCATTTATTTCCCTAATGGGCTTGGACTTATCCTGGGAGCAATG CAGCTGGCGCTCTACGCTTACTACAGCAGAAAATGGAGAGGCCAGGGATTCATCTGCACCCGTTGCTGCTCGCATGATCAAAAACCGGAGTGAATGATTGATCGATCAGCTGGTTTTGCCATGGTTTGGATTCTTGNAAGAGNGGGTTTATGGNGAATTGGACAGNTTTGGCT ]
[-] EMBL CF292772 [ AGCTGTGAGCATGGCTTCGCTGATCTCCATGTTCGCTTCTCCGTTAGC TGT CATGGGAGTTGTGATT CGATCAGAGTCTGTGGAGTTCAAG CCGTTCTATCTGTCACTCTCTACGTTCTTGATGAGCGCCAGTTTTGCATTGTATGGGTTGCTGCTGCGAGATTTCTTCATTTATTTCCCTAGTGGGCTTGGACTTATCCTGGGAGCAATG CAGCTGGCGCTTTACGCTTACTACAGCAGAAAATGGAGAGGCCA GGATTCATCTGCA CCGTTGCTGATAGCATGATC AAAACCGGAGTGAATGATTGATCGATCAGCTGGTTTTGCCATGGTTTGGAATCTTGAAAGAGTGGGTTTAAGGTGAATTGTACAGTTTTGGCTCAGTCTTCACATGTTGGTACTGGAAACTGTACTTCAAACTGCATTCTTCAAACATG TGGAAAGTTTTGCACACCAGGGGGGCAAATGA GGA TTTTTTTTAATTTGAAAACCTCCTTTTCCTTGAAaaaaa ]
[+] EMBL AU096489 [ CGTTAGC TGTCCATGGGAGTNGTGATTCCGGTCAGAGTCTNTGGAGTTCATGCCCGTTCTATCTGTCACTCTCTACGTTCTTGATGAGCGCCAGTTTTGCATTGTATGGNTTGCTGCTGCGAGATTTCTTCATTTATTNCCCTAATGGGCTTGGACTTATCCTGGGAGCAATGCCAGCTGGCGCTCTACGCTTACTACAGCAGAAAATGGAGAGGCCA GGATTCATCTGCA CCGTTGCTGCTCGCATGATC AAAACCGGAGTGAATGATTGATCGATCAGCTGGTTTTGCCATGGTTTGGATTCTTGAAAGAGTGGGTTTATGGTGAATTGTACAGTTTTGGCTCAGTCTTCACATGTTGGTACTGGAAGCTGTACTTCAAACTGCATTCTTCAAACATGTTGGAAAGTTTTGCACACCAGGGGGGCAAATGATGGA TTTTTTTTAATTTGATTCCCTCCTTTTCCTTGAATACTTGGTGTGCAAAATTATTTCAGCTATGCACATTGAGCCTCACTTCTTGTTATCAATTATGACATGTCACATATGTATAAGTTGCGATGATAGTTTTGTTTCGTTGCTGTTTGTAAACTGCAATATTCTTCTCGCCAAACTGTGTGAACAACAAATCAATGGCCACGTCATATATGTACAAGTTGAGATGATAAAAAAAA ]
[-] EMBL CF293462 [ T CATGGGAGTTGTGATT CGGTCAGAGTCTGTGGAGTTCATG CCGTTCTATCTGTCACTCTCTACGTTCTTGATGAGCGCCAGTTTTGCATTGTATGGGTTGCTGCTGCGAGATTTCTTCATTTATTTCCCTAATGGGCTTGGACTTATCCTGGGAGCAATG CAGCTGGCGCTCTACGCTTACTACAGCAGAAAATGGAGAGGCCA GGATTCATCTGCA CCGTTGCTGCTCGCATGATC AAAACCGGAGTGAATGATTGATCGATCAGCTGGTTTTGCCATGGTTTGGATTCTTGAAAGAGTGGGTTTATGGTGAATTGTACAGTTTTGGCTCAGTCTTCACATGTTGGTACTGGAAGCTGTACTTCAAACTGCATTCTTCAAACATGTTGGAGAGTTTTGCACACCAGGGGGGCAAATGATGGA TTTTTTTTAATTTGATTCCCTCCTTTTCCTTGAATACTTGGTGTGCAAAATTATTTCAGCTATGCACATTGAGCCTCACTTCTTGTTATCAATTATGACATGTCACATATGTATAAGTTGCGATGATAGTTTTGTTTCGTTGCTGTTTGTAAAaaa ]
[-] EMBL CA763017 [ GATT CGGTCAGAGTCTGTGGAGTTCATG CCGTTCTATCTGTCACTCTNTACGTTCTTGATGAGCGCCAGTTTTGCATGGTATGGGTTGCTGCTGCGAGATTTCTTCATTTATTTCCCTAATGGGCTTGGACTTATCCTGGGAGCAATG CAGCTGGCGCTCTACGCTTACTACAGCAGAAAATGGAGAGGCCA GGATTCATTTGCA CCGTTGCTGCTCGCATGATC AAAACCGGAGTGAATGATTGATCGATCAGCTGGTTTTGCCATGGTTTGGATTCTTGAAAGAGTGGGTTTATGGTGAATTGTACAGTTTTGGCTCAGTCTTCACATGTTGGT CTGGAAGCTGTACTTCAAACTGCATTCTTCAAACATGTTGGAAAGTTTTGCACGCCAGGGGGGCAAATCATGGATTTTTTTTTAATTTGATTCCCTCCTTTTCCTTGAATACTTGGTGTGCAAAATTATTTCAGCTATGCACATTGAGCCTCACTTCTTGTTATCAATTATGACATGTCACATATGTATAAGTTGCGATGATAGTTTTGTTTCGTTGCTGTTTGTAAACTGCAATATTCTTCTCGCCAAACTGTGTGAACAACAAATCAATGGCCACGTCATATATGTACAAGTTGAGATGATAAAAAAAAAATAAAAAAAAAAAAAAA]
[-] EMBL CF309719 [ AGAGGCCA GGATTCATCTGCA CCATTGCTGCTCGCATGATC AAAACCGGAGTGAATGATTGATCGATCAGCTGGTTTTGCCATGGTTTGGATTCTTGAAAGAGTGGGTTTATGGTGAATTGTACAGTTTTGGCTCAGTCTTCACATGTTGGTACTGGAAGCTGTACTTCAAACTGCATTCTTCAAACATGTTGGAAAGTTTTGCACACCAGGGGGGCAAATGATGGA TTTTTTTTAATTTGATTCCCTCCTTTTCCTTGAATACTTGGTGTGCAAAATTATTTCAGCTATGCACATTGAGCCTCACTTCTTGTTATCAATTATGACATGTCACATATGTATAAGTTGCGATGATAGTTTTGTTTCGTTGCTGTTTGTAAACTGCAATATTCTTCTCGCCAAACTGTGTGAACAACAAATCAATGGCCACGTCATATATGTAAAAaaaa ]
consensusID : consensus_14311#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 774 fasta sequence
[CTTACACCCCTTCATAAGTTCCTATCGCAAAATGGTCTGGATCGAAAAGAGGCTTGCTAATCTTCTGAAAATCTGGCCGCCTCCTTTTGTTTTGTCGCTGCAGGCAACATCTTTGCGCTTGCTCTCTTCCTGTCGCCAGTGACGACGTTTAAGAGGATCCTGAAGGCCAAATCGACCGAGCGATTCGACGGGCTCCCTTACCTGTTCTCGCTGCTGAATTGCCTCATCTGCCTGTGGTATGGACTTCCCTGGGTCGCCGATGGCAGGCTGCTCGTCGCTACCGTCAACGGCATTGGAGCGGTGTTCCAGCTCGCCTACATTTGCCTCTTCATCTTCTACGCGGACAGCAGGAAGACGAGGATGAAGATCATAGGGCTCTTGGTGCTGGTAGTTTGCGGGTTTGCGCTAGTTTCACATGCGAGCGTCTTTTTCTTTGATCAACCGCTTCGGCAGCAGTTTGTGGGAGCTGTGAGCATGGCTTCGCTGATCTCCATGTTCGCTTCTCCGTTAGCTGTCATGGGAGTTGTGATTCGGTCAGAGTCTGTGGAGTTCATGCCGTTCTATCTGTCACTCTCTACGTTCTTGATGAGCGCCAGTTTTGCATTGTATGGGTTGCTGCTGCGAGATTTCTTCATTTATTTCCCTAATGGGCTTGGACTTATCCTGNGAGCAATGCAGCTGGCGCTCTACGCTTACTACAGCAGAAAATGGAGAGGCCAGGATTCATCTGCACCGTTGCTGCTCGCATGATCAANACCGGAGTGAATGATTGAT]
[+] EMBL CB684560 [CTTACACCCCTTCATAAGTTCCTATCGCAAAATGGTCTGGATCGAAAAGAGGCTTGCTAATCTTCTGAAAATCTGGCCGCCTCCTTTTGTTTTGTCGCTGCAGGCAACATCTTTGCGCTTGCTCTCTTCCTGTCGCCAGTGACGACGTTTAAGAGGATCCTGAAGGCCAAATCGACCGAGCGATTCGACGGGCTCCCTTACCTGTTCTCGCTGCTGAATTGCCTCATCTGCCTGTGGTATGGACTTCCCTGGGTCGCCGATGGCAGGCTGCTCGTCGCTACCGTCAACGGCATTGGAGCGGTGTTCCAGCTCGCCTACATTTGCCTCTTCATCTTCTACGCGGACAGCAGGAAGACGAGGATGAAGATCATAGGGCTCTTGGTGCTGGTAGTTTGCGGGTTTGCGCTAGTTTCACATGCGAGCGTCTTTTTCTTTGATCAACCGCTTCGGCAGCAGTTTGTGGGAGCTGTGAGCATGGCTTCGCTGATCTCCATGTTCGCTTCTCCGTTAGCTGTCATGGGAGTTGTGATTCGGTCAGAGTCTGTGGAGTTCATGCCGTTCTATCTGTCACTCTCTACGTTCTTGATGAGCGCCAGTTTTGCATTGTATGGGTTGCTGCTGCGAGATTTCTTCATTTATTTCCCTAATGGGCTTGGACTTATCCTGNGAGCAATGCAGCTGGCGCTCTACGCTTACTACAGCAGAAAATGGAGAGGCCAGGATTCATCTGCACCGTTGCTGCTCGCATGATCAANACCGGAGTGAATGATTGAT]
consensusID : consensus_14311#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 704 fasta sequence
[GCTGCTCGTCGCTACCGTCAACGGCATTGGANCGGTGTTCCAGCTCGCCTACATTTNCCTCTTCATCTTCTACGCGGACAGCAGGAAGACGAGGATGAAGATCATAGGGCTCTTGGTGCTGGTAGTTTGCGGGTTTGCGCTAGTTTCACATGCGAGCGTCTTTTTCTTTGATCAACCGCTTCGNCAGCAGTTTGTGGGAGCTGTGAGCATGNTTCGCTGATCTCCATGTTCGCTTCTCCGTTAGCTGTCATGGGAGTTGTGATTCGGTCAGAGTCTGTGGAGTTCATNCCGTTCTATCTGTCACTCTCTACGCTTACTACAGCAGAAAATGGAGAGGCCAGGATTCATCTGCACCGTTGCTGCTCGCATGATCAAAACCGGAGTGAATGATTGATCGATCAGCTGGTTTTNCCATGGTTTGGATTCTTGAAAGAGTGGGTTTATGGTGAATTGTACAGTTTTGGCTCAGTCTTCACATGTTGGTACTGGAAGCTGTACTTCAAACTGCATTCTTCAAACATGTTGGAAAGTTTTGCACACCAGGGGGGCAAATGATGGATTTTTTTTAATTTGATTCCCTCCTTTTCCTTGAATACTTGGTGTGCAAAATTATTTCAGCTATGCACATTGAGCCTCACTTCTTGTTATCAATTATGACATGTCACATATGTATAAGTTGCGATGATAGTTTTGTTTCAAAAAAA]
[+] EMBL AU032780 [GCTGCTCGTCGCTACCGTCAACGGCATTGGANCGGTGTTCCAGCTCGCCTACATTTNCCTCTTCATCTTCTACGCGGACAGCAGGAAGACGAGGATGAAGATCATAGGGCTCTTGGTGCTGGTAGTTTGCGGGTTTGCGCTAGTTTCACATGCGAGCGTCTTTTTCTTTGATCAACCGCTTCGNCAGCAGTTTGTGGGAGCTGTGAGCATGNTTCGCTGATCTCCATGTTCGCTTCTCCGTTAGCTGTCATGGGAGTTGTGATTCGGTCAGAGTCTGTGGAGTTCATNCCGTTCTATCTGTCACTCTCTACGCTTACTACAGCAGAAAATGGAGAGGCCAGGATTCATCTGCACCGTTGCTGCTCGCATGATCAAAACCGGAGTGAATGATTGATCGATCAGCTGGTTTTNCCATGGTTTGGATTCTTGAAAGAGTGGGTTTATGGTGAATTGTACAGTTTTGGCTCAGTCTTCACATGTTGGTACTGGAAGCTGTACTTCAAACTGCATTCTTCAAACATGTTGGAAAGTTTTGCACACCAGGGGGGCAAATGATGGATTTTTTTTAATTTGATTCCCTCCTTTTCCTTGAATACTTGGTGTGCAAAATTATTTCAGCTATGCACATTGAGCCTCACTTCTTGTTATCAATTATGACATGTCACATATGTATAAGTTGCGATGATAGTTTTGTTTCAAAAAAA]
consensusID : consensus_14311#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence
[GAANTTCCCTCATCTNCCTGTGGGTATGNACTCCCCTGGGTCNCCGAATGGCAGGCTGCTCGTCGCTACCGTCAACGGCATTGGAACCGGTGTTCCAAGCTCGCCNACATTTGCNTCTTCATCTTCTACNCGGACAGCAGGAAGACCGAGGATGAAGATCATAGGNCTCTTGGTGCTGGTAGTTTGCGGGTTTGCCGCTAGTTTCACATGCGAGCGTCTTTTTCTTTGATCAACCGCTTCGGCAGCAGTTTGTGGGANCTGTGAGCATGNTTCGCTGATCTCCATGTTCGCTTCTCCGTTAGCTGTCATGGGAGTTGTGATTCGGTCAGAGTCTGTGGAGTTCATGCCGTTCTATCTGTCACTCTCTACGTTCTTGATGAGCGCCAGTTTTGCATTTTCCCTAATGGGCTTGGACTTATCCTGGGAGCAATGCACTGGCGCTCTACGCTTACTACAGCAGAAAATGGAGAGGCCAGGATTCATCTGCACCGTTGCTGCTCGCATGATCAAAACCGGAGTGAATGATTGATCGATCAGCTGGTTTTGCCATGGTTTGGATTCTTGAAAGAGTGGGTTTATGGTGAATTGTACAGTTTTGGCTCAGTCTTCACATGTTGGTACTGGAAGCTGTACTTCAAACTGCATTCTTCAAACATGTTGCAAAATTATTTCAGCTATGCAAAAA]
[+] EMBL AU095897 [GAANTTCCCTCATCTNCCTGTGGGTATGNACTCCCCTGGGTCNCCGAATGGCAGGCTGCTCGTCGCTACCGTCAACGGCATTGGAACCGGTGTTCCAAGCTCGCCNACATTTGCNTCTTCATCTTCTACNCGGACAGCAGGAAGACCGAGGATGAAGATCATAGGNCTCTTGGTGCTGGTAGTTTGCGGGTTTGCCGCTAGTTTCACATGCGAGCGTCTTTTTCTTTGATCAACCGCTTCGGCAGCAGTTTGTGGGANCTGTGAGCATGNTTCGCTGATCTCCATGTTCGCTTCTCCGTTAGCTGTCATGGGAGTTGTGATTCGGTCAGAGTCTGTGGAGTTCATGCCGTTCTATCTGTCACTCTCTACGTTCTTGATGAGCGCCAGTTTTGCATTTTCCCTAATGGGCTTGGACTTATCCTGGGAGCAATGCACTGGCGCTCTACGCTTACTACAGCAGAAAATGGAGAGGCCAGGATTCATCTGCACCGTTGCTGCTCGCATGATCAAAACCGGAGTGAATGATTGATCGATCAGCTGGTTTTGCCATGGTTTGGATTCTTGAAAGAGTGGGTTTATGGTGAATTGTACAGTTTTGGCTCAGTCTTCACATGTTGGTACTGGAAGCTGTACTTCAAACTGCATTCTTCAAACATGTTGCAAAATTATTTCAGCTATGCAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14311#1 CTTACACCCCTTCATAAGTTCCTATCGCAAAATGGTCTGGATCGAAAAGAGGCTTGCTAA 60
consensus_14311#3 ------------------------------------------------------------
consensus_14311#0 ---------------GAGAAAAGGGAAGATACAAGTGTCATCCCGCATCCAACAACCATG 45
consensus_14311#2 ------------------------------------------------------------
consensus_14311#1 TCTTCTGAAAATCTGGCCGCCTCCTTTTGTTTTGTCGCTGCAGGCAACATCTTTGCGCTT 120
consensus_14311#3 ------------------------------------------------------------
consensus_14311#0 GACTCCTTGTATGATATCTCCTGCTTTGCTGCTGGTCTTGCAGGCAACATCTTTGCGCTT 105
consensus_14311#2 ------------------------------------------------------------
consensus_14311#1 GCTCTCTTCCTGTCGCCAGTGACGACGTTTAAGAGGATCCTGAAGGCCAAATCGACCGAG 180
consensus_14311#3 ------------------------------------------------------------
consensus_14311#0 GCTCTCTTCCTGTCGCCAGTGACGACGTTTAAGAGGATCCTGAAGGCCAAATCGACCGAG 165
consensus_14311#2 ------------------------------------------------------------
consensus_14311#1 CGATTCGACGGGCTCCCTTACCTGTTCTCGCTGCTGAATTGCCTCATCTGCCTGTGG-TA 239
consensus_14311#3 ----------------------------------GAANTTCCCTCATCTNCCTGTGGGTA 26
consensus_14311#0 CGATTCGACGGGCTCCCTTACCTGTTCTCGCTGCTGAATTGCCTCATCTGCCTGTGG-TA 224
consensus_14311#2 ------------------------------------------------------------
consensus_14311#1 TGGACTTCCCTGGGTCGCCGA-TGGCAGGCTGCTCGTCGCTACCGTCAACGGCATTGGAG 298
consensus_14311#3 TGNACTCCCCTGGGTCNCCGAATGGCAGGCTGCTCGTCGCTACCGTCAACGGCATTGGAA 86
consensus_14311#0 TGGACTTCCCTGGGTCGCCGA-TGGCAGGCTGCTCGTCGCTACCGTCAACGGCATTGGAG 283
consensus_14311#2 ----------------------------GCTGCTCGTCGCTACCGTCAACGGCATTGGAN 32
*******************************
consensus_14311#1 C-GGTGTTCCA-GCTCGCCTACATTTGCCTCTTCATCTTCTACGCGGACAGCAGGAAGAC 356
consensus_14311#3 CCGGTGTTCCAAGCTCGCCNACATTTGCNTCTTCATCTTCTACNCGGACAGCAGGAAGAC 146
consensus_14311#0 C-GGTGTTCCA-GCTCGCCTACATTTGCCTCTTCATCTTCTACGCGGACAGCAGGAAGAC 341
consensus_14311#2 C-GGTGTTCCA-GCTCGCCTACATTTNCCTCTTCATCTTCTACGCGGACAGCAGGAAGAC 90
* ********* ******* ****** * ************** ****************
consensus_14311#1 -GAGGATGAAGATCATAGGGCTCTTGGTGCTGGTAGTTTGCGGGTTTGC-GCTAGTTTCA 414
consensus_14311#3 CGAGGATGAAGATCATAGGNCTCTTGGTGCTGGTAGTTTGCGGGTTTGCCGCTAGTTTCA 206
consensus_14311#0 -GAGGATGAAGATCATAGGGCTCTTGGTGCTGGTAGTTTGCGGGTTTGC-GCTAGTTTCA 399
consensus_14311#2 -GAGGATGAAGATCATAGGGCTCTTGGTGCTGGTAGTTTGCGGGTTTGC-GCTAGTTTCA 148
****************** ***************************** **********
consensus_14311#1 CATGCGAGCGTCTTTTTCTTTGATCAACCGCTTCGGCAGCAGTTTGTGGGAGCTGTGAGC 474
consensus_14311#3 CATGCGAGCGTCTTTTTCTTTGATCAACCGCTTCGGCAGCAGTTTGTGGGANCTGTGAGC 266
consensus_14311#0 CATGCGAGCGTCTTTTTCTTTGATCAACCGCTTCGGCAGCAGTTTGTGGGAGCTGTGAGC 459
consensus_14311#2 CATGCGAGCGTCTTTTTCTTTGATCAACCGCTTCGNCAGCAGTTTGTGGGAGCTGTGAGC 208
*********************************** *************** ********
consensus_14311#1 ATGGCTTCGCTGATCTCCATGTTCGCTTCTCCGTTAGCTGTCATGGGAGTTGTGATTCGG 534
consensus_14311#3 ATGN-TTCGCTGATCTCCATGTTCGCTTCTCCGTTAGCTGTCATGGGAGTTGTGATTCGG 325
consensus_14311#0 ATGGCTTCGCTGATCTCCATGTTCGCTTCTCCGTTAGCTGTCATGGGAGTTGTGATTCGG 519
consensus_14311#2 ATGN-TTCGCTGATCTCCATGTTCGCTTCTCCGTTAGCTGTCATGGGAGTTGTGATTCGG 267
*** *******************************************************
consensus_14311#1 TCAGAGTCTGTGGAGTTCATGCCGTTCTATCTGTCACTCTCTACGTTCTTGATGAGCGCC 594
consensus_14311#3 TCAGAGTCTGTGGAGTTCATGCCGTTCTATCTGTCACTCTCTACGTTCTTGATGAGCGCC 385
consensus_14311#0 TCAGAGTCTGTGGAGTTCATGCCGTTCTATCTGTCACTCTCTACGTTCTTGATGAGCGCC 579
consensus_14311#2 TCAGAGTCTGTGGAGTTCATNCCGTTCTATCTGTCACTCTCTACGCTTACTACAGCAGAA 327
******************** ************************ * * *
consensus_14311#1 AGTTTTGCATTGTATGGGTTGCTGCTGCGAGATTTCTTCATTTATTTCCCTAATGGGCTT 654
consensus_14311#3 AGTTTTGCATT----------------------------------TTCCCTAATGGGCTT 411
consensus_14311#0 AGTTTTGCATTGTATGGGTTGCTGCTGCGAGATTTCTTCATTTATTTCCCTAATGGGCTT 639
consensus_14311#2 AATGGAGAGGC---CAGGATTCATCTGCACCGTTGCTGC-----TCGCATGATCAAAACC 379
* * * * *
consensus_14311#1 GGACTTATCCTGNGAGCAATGCAGCTGGCGCTCT-ACGCTTACTACAGCAGAAAATGGAG 713
consensus_14311#3 GGACTTATCCTGGGAGCAATGCA-CTGGCGCTCT-ACGCTTACTACAGCAGAAAATGGAG 469
consensus_14311#0 GGACTTATCCTGGGAGCAATGCAGCTGGCGCTCT-ACGCTTACTACAGCAGAAAATGGAG 698
consensus_14311#2 GGAGTGAATGATTGATCGAT-CAGCTGGTTTTNCCATGGTTTGGATTCTTGAAAG-AGTG 437
*** * * ** * ** ** **** * * * ** * **** * *
consensus_14311#1 AGGCCAGGATTCATCTGCACCGTTGCTGCTC-GCATGATCAANACCGGAGTGAATGATTG 772
consensus_14311#3 AGGCCAGGATTCATCTGCACCGTTGCTGCTC-GCATGATCAAAACCGGAGTGAATGATTG 528
consensus_14311#0 AGGCCAGGATTCATCTGCACCGTTGCTGCTC-GCATGATCAAAACCGGAGTGAATGATTG 757
consensus_14311#2 GGTTTATGGTGAAT-TGTACAGTTTTGGCTCAGTCTTCACATGTTGGTACTGGAAGCTGT 496
* * * * ** ** ** *** **** * * ** * * ** * * *
consensus_14311#1 A--T-------------------------------------------------------- 774
consensus_14311#3 A--TCGATCAGCTGGTTTTGCCATGGTTTGGATTCTTGAAAGAGTGGGTTTATGGTGAAT 586
consensus_14311#0 A--TCGATCAGCTGGTTTTGCCATGGTTTGGATTCTTGAAAGAGTGGGTTTATGGTGAAT 815
consensus_14311#2 ACTTCAAACTGCATTCTTCAAACATGTTGGAAAGTTTTGCACACCAGGGGGGCAAATGAT 556
* *
consensus_14311#1 ------------------------------------------------------------
consensus_14311#3 TGTACAGTTTTGGCTCAGTCTTCACATGTTGGTACTGGAAGCTGTACTTCAAACTGCATT 646
consensus_14311#0 TGTACAGTTTTGGCTCAGTCTTCACATGTTGGTACTGGAAGCTGTACTTCAAACTGCATT 875
consensus_14311#2 GGATTTTTTTTAATTTGATTCCCTCCTTTTCCTTGAATACTTGGTGTGCAAAATTATTTC 616
consensus_14311#1 ------------------------------------------------------------
consensus_14311#3 CTTCAAACATGTTGCAAAATTATTTCAGCTATGCAAAAA--------------------- 685
consensus_14311#0 CTTCAAACATGTTGGAAAGTTTTGCACACCAGGGGGGCAAATGATGGATTTTTTTTAATT 935
consensus_14311#2 AGCTATGCACATTGAGCCTCACTTCTTGTTATCAATTATGACATGTCACATATGTATAAG 676
consensus_14311#1 ------------------------------------------------------------
consensus_14311#3 ------------------------------------------------------------
consensus_14311#0 TGATTCCCTCCTTTTCCTTGAATACTTGGTGTGCAAAATTATTTCAGCTATGCACATTGA 995
consensus_14311#2 TTGCGATGATAGTTTTGTTTCAAAAAAA-------------------------------- 704
consensus_14311#1 ------------------------------------------------------------
consensus_14311#3 ------------------------------------------------------------
consensus_14311#0 GCCTCACTTCTTGTTATCAATTATGACATGTCACATATGTATAAGTTGCGATGATAGTTT 1055
consensus_14311#2 ------------------------------------------------------------
consensus_14311#1 ------------------------------------------------------------
consensus_14311#3 ------------------------------------------------------------
consensus_14311#0 TGTTTCGTTGCTGTTTGTAAACTGCAATATTCTTCTCGCCAAACTGTGTGAACAACAAAT 1115
consensus_14311#2 ------------------------------------------------------------
consensus_14311#1 ------------------------------------------------------------
consensus_14311#3 ------------------------------------------------------------
consensus_14311#0 CAATGGCCACGTCATATATGTACAAGTTGAGATGATAAAAAAAAAATAAAAAAAAAAAAA 1175
consensus_14311#2 ------------------------------------------------------------
consensus_14311#1 --
consensus_14311#3 --
consensus_14311#0 AA 1177
consensus_14311#2 --
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||