|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14340#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1745 fasta sequence
[ATTGGTAAGGTTGTTCAAATCAATCAAGTCTAGTGTAGTAGCTAATTAAGCCGCCGCCGCGAGTCGACCTCGCAACCATCCATGGCCCCGCGCCTCCTCCTCGCCCTCGCCCTCGTCCTGCTCGCCTCCGGCGCAAGCGCGGCGAGCGTGGGGGACACGTGCTCGTCGGAGGGAGACTGCGGCGCGGGGCTGCACTGCAGCGACTGCGGCGGCGGCGGCGGCGGCGACAAGACGTGCACGCGCGCCAAGCCCATCGACCCGCTCACGCACGGCACGGATCTCCCCTTCAACAACTACTCATGGCTGACGACGCACAACTCGTACGCCCTCGCCGGCTCCTCCTCCGCCACCGGCTCCGCCCTCATCACCCAAACCAACCAGGAGGACACCATCACCGCCCAGCTCAAGAATGGTGTTAGGGGCTTGATGCTTGACACTTACGACTTCAATAATGATGTCTGGCTGTGCCACTCATTTCAAGGGAAATGCTTTAACTTCACAGCCTTTCAACCTGCCATCAATGTGTTGAAAGAAATCCGGACGTTCCTTGACGGTAACCCTTCAGAAGTAATCACAATTTTCTTGGAAGATTATACTGCTTCTGGGTCTCTGCCAAAAGTATTCAATGCTTCTGGACTCATGAAGTATTGGTTCCCAGTGGCTAAAATGCCCAAGAGCGGTGGCGACTGGCCTCTACTCAAGGACATGATCAGCCAGAACGAGCGCCTGCTAGTCTTCACATCAAAGAAATCAAAAGAAGCAAGCGAGGGGATCGCTTACGAGTGGAGTTACGTCGTGGAAAACCAATATGGAAATGAAGGGATGGTAGAGGGTAAATGCCCGAATCGTGCAGAGTCTCCAGCCATGGATTCCAAAAGCCAGTCTCTTGTCCTGATGAACTTCTTCACAACAGACCCAAGTCAAACAGGGGTTTGCGCAAACAACTCAGCGCCACTTGTTAGCATGCTGAAAACCTGCCATGATCTCTCGGGCAATCGGTGGCCCAATTACATCGCTGTTGATTTCTACATGAGGAGCGATGGTGGAGGAGCTCCCTTAGCTACTGACATCGCAAATGGTCATCTAGTATGTGGGTGTGACAACATCGCATAC-TGCAAGGCGAATTCGACATTCGGGACATGTGTGATACC-TCCACCTTCACCGCCGCCGTCGCCTCGGAAGGCACCCAGCGGCGGCAA-GGGCACAAGTGCAGGCGGCAGCTCCAGTTCCAGCGGCGCAATGGCTCGGGTTGTACT-ACCAAAGC-TGAGCTTCTTCTTCGGAGT-GGCACTTCTGATCCTGGTCATACTCTCTTATTAAGAGCAGACCCATTCACTTGAGCTTGTGCTGTCTTTGTGCTCTGCTGGTA-CAAGCACATACTGTACTG-CCATTCTGAGGCAAAATTTTCTGCTCTTTTTTTAGCCACCTGTTCCATTGGTTTGTAACTTCTTTTTCTTTTTTGTTAATGAGAGCTGTAGATGCCAGATTAGCTGGAGAAATTGTTCATGTGCCGAGCTGTAGATCATTCCTTTTATTTGAGGCAATATTTTTCTGCATATCAAGTGATCTTATTGCTCATAAAATAACTGCAATCGCATTGTAAAAAAATGTTGTGGTAAGACCTTTTACAGGTGCAAAATATGCCTATTATGCATAGCCAGCAAATGGAACAGATTCTGCATATGTCATCAGGATTATTCTTGATCTTATGCACTTTATGTTCCAAGAAAAANAAAAAAAAAAAAAAA]
[+] EMBL AK067883 [ATTGGTAAGGTTGTTCAAATCAATCAAGTCTAGTGTAGTAGCTAATTAAGCCGCCGCCGCGAGTCGACCTCGCAACCATCCATGGCCCCGCGCCTCCTCCTCGCCCTCGCCCTCGTCCTGCTCGCCTCCGGCGCAAGCGCGGCGAGCGTGGGGGACACGTGCTCGTCGGAGGGAGACTGCGGCGCGGGGCTGCACTGCAGCGACTGCGGCGGCGGCGGCGGCGGCGACAAGACGTGCACGCGCGCCAAGCCCATCGACCCGCTCACGCACGGCACGGATCTCCCCTTCAACAACTACTCATGGCTGACGACGCACAACTCGTACGCCCTCGCCGGCTCCTCCTCCGCCACCGGCTCCGCCCTCATCACCCAAACCAACCAGGAGGACACCATCACCGCCCAGCTCAAGAATGGTGTTAGGGGCTTGATGCTTGACACTTACGACTTCAATAATGATGTCTGGCTGTGCCACTCATTTCAAGGGAAATGCTTTAACTTCACAGCCTTTCAACCTGCCATCAATGTGTTGAAAGAAATCCGGACGTTCCTTGACGGTAACCCTTCAGAAGTAATCACAATTTTCTTGGAAGATTATACTGCTTCTGGGTCTCTGCCAAAAGTATTCAATGCTTCTGGACTCATGAAGTATTGGTTCCCAGTGGCTAAAATGCCCAAGAGCGGTGGCGACTGGCCTCTACTCAAGGACATGATCAGCCAGAACGAGCGCCTGCTAGTCTTCACATCAAAGAAATCAAAAGAAGCAAGCGAGGGGATCGCTTACGAGTGGAGTTACGTCGTGGAAAACCAATATGGAAATGAAGGGATGGTAGAGGGTAAATGCCCGAATCGTGCAGAGTCTCCAGCCATGGATTCCAAAAGCCAGTCTCTTGTCCTGATGAACTTCTTCACAACAGACCCAAGTCAAACAGGGGTTTGCGCAAACAACTCAGCGCCACTTGTTAGCATGCTGAAAACCTGCCATGATCTCTCGGGCAATCGGTGGCCCAATTACATCGCTGTTGATTTCTACATGAGGAGCGATGGTGGAGGAGCTCCCTTAGCTACTGACATCGCAAATGGTCATCTAGTATGTGGGTGTGACAACATCGCATAC TGCAAGGCGAATTCGACATTCGGGACATGTGTGATACC TCCACCTTCACCGCCGCCGTCGCCTCGGAAGGCACCCAGCGGCGGCAA GGGCACAAGTGCAGGCGGCAGCTCCAGTTCCAGCGGCGCAATGGCTCGGGTTGTACT ACCAAAGC TGAGCTTCTTCTTCGGAGT GGCACTTCTGATCCTGGTCATACTCTCTTATTAAGAGCAGACCCATTCACTTGAGCTTGTGCTGTCTTTGTGCTCTGCTGGTA CAAGCACATACTGTACTG CCATTCTGAGGCAAAATTTTCTGCTCTTTTTTTAGCCACCTGTTCCATTGGTTTGTAACTTCTTTTTCTTTTTTGTTAATGAGAGCTGTAGATGCCAGATTAGCTGGAGAAATTGTTCATGTGCCGAGCTGTAGATCATTCCTTTTATTTGAGGCAATATTTTTCTGCATATCAAGTGATCTTATTGCTCATAAAATAACTGCAATCGCATTGTAAAAAAATGTTGTGGTAAGACCTTTTACAGGTGCAAAATATG ]
[+] EMBL AU086047 [ ATCAATCAAGTCTAGTGTAGTAGCTAATTAAGCCGCCGCCGCGAGTCGACCTCGCAACCATCCATGGCCCCGCGCCTCCTCCTCGCCCTCGCCCTCGTCCTGCTCGCCTCCGG GCAAGCGNGGCGAGCGTGGGGGACACGTGCTCGTCGGAGGGAGACTGCGGCGCGGGGCTGCACTGCAGCGACTGCGGCGGCGGCGGCGGCGGCGACAAGACGTGCACNCGCGNCAAGCCCATCGACCCGCTCACGCACGGCACGGATCTCCCCTTCAACAACTACTCATGGCTGACGACGCACAACTCGTACGCCCTCGCC ]
[+] EMBL OSS3387A [ ATCAATCAAGTCTAGTGTAGTAGCTAATTAAGCCGACGCCGCGAGTCGACCTCGCAACCATCCATGGCCCCGCGCCTCCTCCTCGCCCTCGNCCTCGTCCTGCTCGCCTCCGG GCAAGCGNGGNGAGCGTGGGGGACACGTGCTCGTCGGAGGGAGACTGCGGCGCGGGGCTGCACTGCAGNGACTGCGGCGGCGGCGGCGGCGGCGACAAGACGTGCACGAGAGCCAAGGCCATCGA ]
[+] EMBL CB643239 [ AGTCTAGTGTAGTAGCTAATTAAGCCGCCGCCGCGAGTCGACCTCGCAACCATCCATGGCCCCGCGCCTCCTCCTCGCCCTCGCCCTCGTCCTGCTCGCCTCCGGCGCAAGCGCGGCGAGCGTGGGGGACACGTGCTCGTCGGAGGGAGACTGCGGCGCGGGGCTGCACTGCAGCGACTGCGGCGGCGGCGGCGGCGGCGACAAGACGTGCACGCGCGCCAAGCCCATCGACCCGCTCACGCACGGCACGGATCTCCCCTTCAACAACTACTCATGGCTGACGACGCACAACTCGTACGCCCTCGCCGGCTCCTCCTCCGCCACCGGCTCCGCCCTCATCACCCAAACCAACCAGGAGGACACCATCACCGCCCAGCTCAAGAATGGTGTTAGGGGCTTGATGCTTGACACTTACGACTTCAATAATGATGTCTGGCTGTGCCACTCATTTCAAGGGAAATGCTTTAACTTCACAGCCTTTCAACCTGCCATCAATGTGTTGAAAGAAATCCGGACGTTCCTTGACGGTAACCCTTCAGAAGTAATCACAATTTTCTTGGAAGATTATACTGCTTCTGGGTCTCTGCCAAAAGTATTCAATGCTTCTGGACTCATGAAGTATTGGTTCCCAGTGGCTAAAATGCCCAAGAGCGGTGGCGACTGGCCTCTACTCAAGGACATGATCAGCCAGAACGAGCGCCTGCTAGTCTTCACATCAAAGAAATCAAAAGAAGCAAGCGAGGGGATCGCTTACGAGTGGAGTTACGTCGTGGAAAACCAATATGGAAATGAAGGGATGGTA ]
[+] EMBL AK060348 [ TGGCCCCGCGCCTCCTCCTCGCCCTCGCCCTCGTCCTGCTCGCCTCCGGCGCAAGCGCGGCGAGCGTGGGGGACACGTGCTCGTCGGAGGGAGACTGCGGCGCGGGGCTGCACTGCAGCGACTGCGGCGGCGGCGGCGGCGGCGACAAGACGTGCACGCGCGCCAAGCCCATCGACCCGCTCACGCACGGCACGGATCTCCCCTTCAACAACTACTCATGGCTGACGACGCACAACTCGTACGCCCTCGCCGGCTCCTCCTCCGCCACCGGCTCCGCCCTCATCACCCAAACCAACCAGGAGGACACCATCACCGCCCAGCTCAAGAATGGTGTTAGGGGCTTGATGCTTGACACTTACGACTTCAATAATGATGTCTGGCTGTGCCACTCATTTCAAGGGAAATGCTTTAACTTCACAGCCTTTCAACCTGCCATCAATGTGTTGAAAGAAATCCGGACGTTCCTTGACGGTAACCCTTCAGAAGTAATCACAATTTTCTTGGAAGATTATACTGCTTCTGGGTCTCTGCCAAAAGTATTCAATGCTTCTGGACTCATGAAGTATTGGTTCCCAGTGGCTAAAATGCCCAAGAGCGGTGGCGACTGGCCTCTACTCAAGGACATGATCAGCCAGAACGAGCGCCTGCTAGTCTTCACATCAAAGAAATCAAAAGAAGCAAGCGAGGGGATCGCTTACGAGTGGAGTTACGTCGTGGAAAACCAATATGGAAATGAAGGGATGGTAGAGGGTAAATGCCCGAATCGTGCAGAGTCTCCAGCCATGGATTCCAAAAGCCAGTCTCTTGTCCTGATGAACTTCTTCACAACAGACCCAAGTCAAACAGGGGTTTGCGCAAACAACTCAGCGCCACTTGTTAGCATGCTGAAAACCTGCCATGATCTCTCGGGCAATCGGTGGCCCAATTACATCGCTGTTGATTTCTACATGAGGAGCGATGGTGGAGGAGCTCCCTTAGCTACTGACATCGCAAATGGTCATCTAGTATGTGGGTGTGACAACATCGCATAC TGCAAGGCGAATTCGACATTCGGGACATGTGTGATACC TCCACCTTCACCGCCGCCGTCGCCTCGGAAGGCACCCAGCGGCGGCAA GGGCACAAGTGCAGGCGGCAGCTCCAGTTCCAGCGGCGCAATGGCTCGGGTTGTACT ACCAAAGC TGAGCTTCTTCTTCGGAGT GGCACTTCTGATCCTGGTCATACTCTCTTATTAAGAGCAGACCCATTCACTTGAGCTTGTGCTGTCTTTGTGCTCTGCTGGTA CAAGCACATACTGTACTG CCATTCTGAGGCAAAATTTTCTGCTCTTTTTTTAGCCACCTGTTCCATTGGTTTGTAACTTCTTTTTCTTTTTTGTTAATGAGAGCTGTAGATGCCAGATTAGCTGGAGAAATTGTTCATGTGCCGAGCTGTAGATCATTCCTTTTATTTGAGGCAATATTTTTCTGCATATCAAGTGATCTTATTGCTCATAAAATAACTGCAATCGCATTGTAAAAAAATGTTGTGGTAAGACCTT ]
[+] EMBL OSR18811A [ TTGATGCTTGACACTTACGACTTCAATAATGATGTCTGGCTGTGCCACTCATTTCAAGGGAAATGCTTTAACTTCACAGCCTTTCAACCTGCCATCAATGTGTTGAAAGAAATCCGGACGTTCCTTGACGGTAACCCTTCAGAAGTAATCACAATTTTCTTGGAAGATTATACTGCTTCTGGGTCTCTGCCAAAAGTATTCAATGCTTCTGGACTCATGAAGTATTGGTTCCCAGTGGCTAAAATGCCCAAGAGCGGTGGCGACTGGCCTCTACTCAAGGACATGATCAGCCAGAACGAGCGCCTNCTAGTCTTCACATCAAAGAAATCAAAAGAAGCAAGCNAGGGGATCGCTTACGAGTGGAGT ]
[-] EMBL CB643240 [ AAAAGAAGCAAGCGAGGGGATCGCTTACGAGTGGAGTTACGTCGTGGAAAACCAATATGGAAATGAAGGGATGGTAGAGGGTAAATGCCCGAATCGTGCAGAGTCTCCAGCCATGGATTCCAAAAGCCAGTCTCTTGTCCTGATGAACTTCTTCACAACAGACCCAAGTCAAACAGGGGTTTGCGCAAACAACTCAGCGCCACTTGTTAGCATGCTGAAAACCTGCCATGATCTCTCGGGCAATCGGTGGCCCAATTACATCGCTGTTGATTTCTACATGAGGAGCGATGGTGGAGGAGCTCCCTTAGCTACTGACATCGCAAATGGTCATCTAGTATGTGGGTGTGACAACATCGCATAC TGCAAGGCGAATTCGACATTCGGGACATGTGTGATACC TCCACCTTCACCGCCGCCGTCGCCTCGGAAGGCACCCAGCGGCGGCAA GGGCACAAGTGCAGGCGGCAGCTCCAGTTCCAGCGGCGCAATGGCTCGGGTTGTACT ACCAAAGC TGAGCTTCTTTTTCGGAGT GGCACTTCTGATCCTGGTCATACTCTCTTATTAAGAGCAGACCCATTCACTTGAGCTTGTGCTGTCTTTGTGCTCTGCTGGTA CAAGCACATACTGTACTG CCATTCTGAGGCAAAATTTTCTGCTCTTTTTTTAGCCACCTGTTCCATTGGTTTGTAACTTCTTTTTCTTTTTTGTTAATGAGAGCTGTAGATGCCAGATTAGCTGGAGAAATTGTTCATGTGCCGAGCTGTAGATCATTCCTTTTATTTGAGGCAATATTTTTCTGCA ]
[+] EMBL AU058308 [ AAGTCAAACAGGGGTTTGCGCAAACAACTCAGCGCCACTTGTTAGCATGCTGAAAACCTGCCATGATCTCTCGGGCAATCGGTGGCCCAATTACATCGCTGTTGATTTCTACATGAGGAGCGATGGTGGAGGAGCTCCCTTAGCTGCTGACATCGCAAATGGTCATCTAGTATGTGGGTGTGACAACATCGCATACNNGCAAGGCGAATTCGACATTCGGGACATGTGTGATACCTTCCACCTTCACCGGCNGCGTCGCCTCGGAANGCA CCAGCGGCGGCAA GGGCACAANTGCA GCGGGAG ]
[+] EMBL AU065619 [ AAGTCAAACAGGGGTTTGCGCAAACAACTCAGCGCCACTTGTTAGCATGCTGAAAACCTGCCATGATCTCTCGGGCAATCGGTGGCCCAATTACATCGCTGTTGATTTCTACATGAGGAGCGATGGTGGAGGAGCTCCCTTAGCTGCTGACATCGCAAATGGTCATCTAGTATGTGGGTGTGACAACATCGCATAC TGCAAGGCGAATTCGACATTCGGGACATGTGTGATACC TCCACCTTCACCGCCGCCGTCGCCTCGGAAGGCACCCAGCGGCGGCAANGGGCACAAGTGCAGGCGGCACTTCCAGTTCCAGCGGCGCATGGGCTCGGGTTGTACTAACCAAAGCTTGAGCTTCTTCTTCGGAGTGGGNACTTCTGATCCTGGGTAAAATCCCTTA ]
[+] EMBL AU184297 [ CATTCGGGACATGTGTGATACC TCCACCTTCACCGCCGCCGTCGCCTCGGAAGGCACCCAGCGGCGGCAA GGGCACAAGTGCAGGCGGCAGCTCCAGTTCCAGCGGCGCAATGGCTCGGGTTGTACT ACCAAAGC TGAGCTTCTTCTTCGGAGT GGCACTTCTGATCCTGGTCATACTCTCTTATTAAGAGCAGACCCATTCACTTGAGCTTGTGCTGTCTTTGTGCTCTGCTGGTA CAAGCACATACTGTACTG CCATTNTGAGGCAAAATTTTCTGCTCTTTTTTTAGCCACCTGTTCCATTGGTTTGTAACTTCTTTTTCTTTTTTGTTAATGAGAGCTGTAGATGCCAGATTAGCTGGAGAAATTGTTCATGTGCCGAGCTGTAGATCATTCCTTTTATTTGAGGCAATATTTTTCTGCAaaaaaa ]
[+] EMBL AU086048 [ cnTCTTC CGGAGT GGCACTTCTGATCCTGGTCATACTCTCTTATNACGAGCAGACCCATTCACTTGAGCTTGNGCTGCCTTTGTGCNCTGCTGGTANCAAGCACATACTGTACTGCCCATTCTGAGGCAAAATTTTCTGCTCTTTTTTTAGCCACCTGTTCCATTGGTTTGTAACTNCTTTTTCTTTTTTGTTAATGAGAGCTGTAGATGCCAGATTAGCTGGAGAAATTGTTCATGTGCCGAGCTGTAGATCATTCCTTTTATTTGAGGCAATATTTTTCTGCATATCAAGTGATCTTATTGCTCATAAAATAACTGCAATCGCATTGTAAAAAAATGTTGTGGTAAGACCTTTTACAGGTGCAAAATATGCCTATTATGCATAGCCAGCAAATGGAACAGATTCTGCATATGTCATCAGGATTATTCTTGATCTTATGCACTTTATGTTCCAAGAAAAANAAAAAAAAAAAAAA ]
[+] EMBL AU097284 [ TAGATGCCAGATTAGCTGGAGAAATTGTTCATGTGCCGAGCTGTAGATCATTCCTTTTATTTGAGGCAATATTTTTCTGCATATCAAGTGATCTTATTGCTCATAAAATAACTGCAATCGCATTGTAAAAAAATGTTGTGGTAAGACCTTTTACAGGTGCAAAATATGCCTATTATGCATAGACAGCAAATGGAACAGATTCTGCATATGTCATCAGGATTATTCTTGATCTTATGCACTTTATGTTCCAAGAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_14340#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 654 fasta sequence
[AGCCACGAGACAAGGGGTTTGCGCAAACAACTCAGCGCCACTTGTTAGCATGCTGAAAACCTGCCATGATCTCTCGGGCAATCGGTGGCCCAATTACATCGCTGTTGATTTCTACATGAGGAGCGATGGTGGAGGAGCTCCCTTAGCTACTGACATCGCAAATGGTCATCTAGTATGTGGGTGTGACAACATCGCATACTGCAAGGCGAATTCGACATTCGGGACATGTGTGATACCTCCACCTTTACCGCCGCCGTCGCCTCGGAAGGCACCCAGCGGCGGCAAGGGCACAAGTGCAGGCGGCAGCTCCAGTTCCAGCGGCGCAATGGCTCGGGTTGTACTACCAAAGCTGAGCTT-TT-TT-GGAGTGGCACTTCTGATCCTGGTCATACTCTCTTATTAAGAGCAGACCCATTCACTTGAGCTTGTGCTGTCTTTGTGCTCTGCTGGTACAAGCACATACTGTACTGCCATTTTGAGGCAAAATTTTTTGCTCTTTTTTTAGCCACCTGTTCCATTGGTTTTTAACTTCTTTTTCTTTTTTGTTAATGAGAGCTGTAGATGCCAGATTAGCTGGAGAAATTGTCCATGTGCCGAGCTGTAGATCATTCCTTTTATTTGAGGCAATATTTTTTTGCATATCAAAAAAAAAAAAAA]
[-] EMBL CA760369 [AGCCACGAGACAAGGGGTTTGCGCAAACAACTCAGCGCCACTTGTTAGCATGCTGAAAACCTGCCATGATCTCTCGGGCAATCGGTGGCCCAATTACATCGCTGTTGATTTCTACATGAGGAGCGATGGTGGAGGAGCTCCCTTAGCTACTGACATCGCAAATGGTCATCTAGTATGTGGGTGTGACAACATCGCATACTGCAAGGCGAATTCGACATTCGGGACATGTGTGATACCTCCACCTTTACCGCCGCCGTCGCCTCGGAAGGCACCCAGCGGCGGCAAGGGCACAAGTGCAGGCGGCAGCTCCAGTTCCAGCGGCGCAATGGCTCGGGTTGTACTACCAAAGCTGAGCTT TT TT GGAGTGGCACTTCTGATCCTGGTCATACTCTCTTATTAAGAGCAGACCCATTCACTTGAGCTTGTGCTGTCTTTGTGCTCTGCTGGTACAAGCACATACTGTACTGCCATTTTGAGGCAAAATTTTTTGCTCTTTTTTTAGCCACCTGTTCCATTGGTTTTTAACTTCTTTTTCTTTTTTGTTAATGAGAGCTGTAGATGCCAGATTAGCTGGAGAAATTGTCCATGTGCCGAGCTGTAGATCATTCCTTTTATTTGAGGCAATATTTTTTTGCATATCAAAAAAAAAAAAAA]
[+] EMBL AU030090 [ AGGAGCTCCCTTAGCTGCTGACATCGCAAATGGTCATCTNGTATGTGGGTGTNACAACATCGCATACTGCAAGGCGAATTCGACATTCGGGACATGTGTGATACCTCCACCTTCACCGCCGCCGTCGCCTCGGAAGGCACCCAGCGGCGGCAAGGGCACAAGTGCAGGCGGCAGCTCCAGTTCCAGCGGCGCAATGGCTCGGGTTGTACTACCAAAGCTGAGCTTCTTCTTCGGNGTGGCACTTCTGATCCTGGTCATACTCTCTTATTAAGAGCAGACCCATTCACTTGAGCTTGTGCTGTCTTTGTGCTCTGCTGGTACAAGCACATACTGTACTGCCATTCTGAGGCAAAATTTTCTGCTCTTTTTTTAGCCACCTGTTCCATTGGTTTGTAACTTCTTTTTCTTTTTTGTTAATGAGAGCTGTAGATGCCAGATTAGCTGGAGAAATTGTTCATGTGCCGAGCTGTNGATNATTCCTTTTATTTGAGGNNATNNTTTTCTGCAAA AAAAAAAAAAA ]
consensusID : consensus_14340#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence
[CAAGTGCAGGCGGCAGCTCCAGTTCCAGCGGCCCTATGGCTCGGGTTGTACTACCAAAGCTGAGCTTCTTCTTCGGAGTGGCACTTCTGATCCTGGTCATACTCTCTTATTAAGAGCAGACCCATTCACTTGAGCTTGTGCTGTCTTTGTGCTCTGCTGGTACAAGCACATACTGTACTGCCATTCTGAGGCAAAATTTTCTGCTCTTTTTTTAGCCACCTGTTCCATTGGTTTGTAACTTCTTTTTCTTTTTTGTTAATGAGAGCTGTAGATGCCAGATTAGCTGGAGAAATTGTTCATGTGCCGAGCTGTAGATCATTCCTTTTATTTGAGGCAATATTTTTCTGCATATCAAGTGATCTTATTGCTCATAAAATAACTGCAATCGCATTGTAAAAAAATGTTGTGGTAAGACCTTTTACAGGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CB000305 [CAAGTGCAGGCGGCAGCTCCAGTTCCAGCGGCCCTATGGCTCGGGTTGTACTACCAAAGCTGAGCTTCTTCTTCGGAGTGGCACTTCTGATCCTGGTCATACTCTCTTATTAAGAGCAGACCCATTCACTTGAGCTTGTGCTGTCTTTGTGCTCTGCTGGTACAAGCACATACTGTACTGCCATTCTGAGGCAAAATTTTCTGCTCTTTTTTTAGCCACCTGTTCCATTGGTTTGTAACTTCTTTTTCTTTTTTGTTAATGAGAGCTGTAGATGCCAGATTAGCTGGAGAAATTGTTCATGTGCCGAGCTGTAGATCATTCCTTTTATTTGAGGCAATATTTTTCTGCATATCAAGTGATCTTATTGCTCATAAAATAACTGCAATCGCATTGTAAAAAAATGTTGTGGTAAGACCTTTTACAGGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_14340#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 186 fasta sequence
[ACTGCCATTCTGAGGCAAAATTTTCTGCTCTTTTTTTAGCCACCTGTTCCATTGGTTTGTAACTTCTTTTTCTTTTTTGTTAATGAGAGCTGTNGATGCCNGATTAGCTGGNGAAATTGTTCATGTGCCGAGCTGTNGATCATTCCTTTTATTTGAGGNNATATTTTTCTGCAAAAAAAAAAAAAA]
[+] EMBL AU166176 [ACTGCCATTCTGAGGCAAAATTTTCTGCTCTTTTTTTAGCCACCTGTTCCATTGGTTTGTAACTTCTTTTTCTTTTTTGTTAATGAGAGCTGTNGATGCCNGATTAGCTGGNGAAATTGTTCATGTGCCGAGCTGTNGATCATTCCTTTTATTTGAGGNNATATTTTTCTGCAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14340#2 ------------------------------------------------------------
consensus_14340#3 ------------------------------------------------------------
consensus_14340#0 ATTGGTAAGGTTGTTCAAATCAATCAAGTCTAGTGTAGTAGCTAATTAAGCCGCCGCCGC 60
consensus_14340#1 ------------------------------------------------------------
consensus_14340#2 ------------------------------------------------------------
consensus_14340#3 ------------------------------------------------------------
consensus_14340#0 GAGTCGACCTCGCAACCATCCATGGCCCCGCGCCTCCTCCTCGCCCTCGCCCTCGTCCTG 120
consensus_14340#1 ------------------------------------------------------------
consensus_14340#2 ------------------------------------------------------------
consensus_14340#3 ------------------------------------------------------------
consensus_14340#0 CTCGCCTCCGGCGCAAGCGCGGCGAGCGTGGGGGACACGTGCTCGTCGGAGGGAGACTGC 180
consensus_14340#1 ------------------------------------------------------------
consensus_14340#2 ------------------------------------------------------------
consensus_14340#3 ------------------------------------------------------------
consensus_14340#0 GGCGCGGGGCTGCACTGCAGCGACTGCGGCGGCGGCGGCGGCGGCGACAAGACGTGCACG 240
consensus_14340#1 ------------------------------------------------------------
consensus_14340#2 ------------------------------------------------------------
consensus_14340#3 ------------------------------------------------------------
consensus_14340#0 CGCGCCAAGCCCATCGACCCGCTCACGCACGGCACGGATCTCCCCTTCAACAACTACTCA 300
consensus_14340#1 ------------------------------------------------------------
consensus_14340#2 ------------------------------------------------------------
consensus_14340#3 ------------------------------------------------------------
consensus_14340#0 TGGCTGACGACGCACAACTCGTACGCCCTCGCCGGCTCCTCCTCCGCCACCGGCTCCGCC 360
consensus_14340#1 ------------------------------------------------------------
consensus_14340#2 ------------------------------------------------------------
consensus_14340#3 ------------------------------------------------------------
consensus_14340#0 CTCATCACCCAAACCAACCAGGAGGACACCATCACCGCCCAGCTCAAGAATGGTGTTAGG 420
consensus_14340#1 ------------------------------------------------------------
consensus_14340#2 ------------------------------------------------------------
consensus_14340#3 ------------------------------------------------------------
consensus_14340#0 GGCTTGATGCTTGACACTTACGACTTCAATAATGATGTCTGGCTGTGCCACTCATTTCAA 480
consensus_14340#1 ------------------------------------------------------------
consensus_14340#2 ------------------------------------------------------------
consensus_14340#3 ------------------------------------------------------------
consensus_14340#0 GGGAAATGCTTTAACTTCACAGCCTTTCAACCTGCCATCAATGTGTTGAAAGAAATCCGG 540
consensus_14340#1 ------------------------------------------------------------
consensus_14340#2 ------------------------------------------------------------
consensus_14340#3 ------------------------------------------------------------
consensus_14340#0 ACGTTCCTTGACGGTAACCCTTCAGAAGTAATCACAATTTTCTTGGAAGATTATACTGCT 600
consensus_14340#1 ------------------------------------------------------------
consensus_14340#2 ------------------------------------------------------------
consensus_14340#3 ------------------------------------------------------------
consensus_14340#0 TCTGGGTCTCTGCCAAAAGTATTCAATGCTTCTGGACTCATGAAGTATTGGTTCCCAGTG 660
consensus_14340#1 ------------------------------------------------------------
consensus_14340#2 ------------------------------------------------------------
consensus_14340#3 ------------------------------------------------------------
consensus_14340#0 GCTAAAATGCCCAAGAGCGGTGGCGACTGGCCTCTACTCAAGGACATGATCAGCCAGAAC 720
consensus_14340#1 ------------------------------------------------------------
consensus_14340#2 ------------------------------------------------------------
consensus_14340#3 ------------------------------------------------------------
consensus_14340#0 GAGCGCCTGCTAGTCTTCACATCAAAGAAATCAAAAGAAGCAAGCGAGGGGATCGCTTAC 780
consensus_14340#1 ------------------------------------------------------------
consensus_14340#2 ------------------------------------------------------------
consensus_14340#3 ------------------------------------------------------------
consensus_14340#0 GAGTGGAGTTACGTCGTGGAAAACCAATATGGAAATGAAGGGATGGTAGAGGGTAAATGC 840
consensus_14340#1 ------------------------------------------------------------
consensus_14340#2 ------------------------------------------------------------
consensus_14340#3 ------------------------------------------------------------
consensus_14340#0 CCGAATCGTGCAGAGTCTCCAGCCATGGATTCCAAAAGCCAGTCTCTTGTCCTGATGAAC 900
consensus_14340#1 ------------------------------------------------------------
consensus_14340#2 ------------------------------------------------------------
consensus_14340#3 ------------------------------------------------------------
consensus_14340#0 TTCTTCACAACAGACCCAAGTCAAACAGGGGTTTGCGCAAACAACTCAGCGCCACTTGTT 960
consensus_14340#1 -----------AGCCACGAGACA---AGGGGTTTGCGCAAACAACTCAGCGCCACTTGTT 46
consensus_14340#2 ------------------------------------------------------------
consensus_14340#3 ------------------------------------------------------------
consensus_14340#0 AGCATGCTGAAAACCTGCCATGATCTCTCGGGCAATCGGTGGCCCAATTACATCGCTGTT 1020
consensus_14340#1 AGCATGCTGAAAACCTGCCATGATCTCTCGGGCAATCGGTGGCCCAATTACATCGCTGTT 106
consensus_14340#2 ------------------------------------------------------------
consensus_14340#3 ------------------------------------------------------------
consensus_14340#0 GATTTCTACATGAGGAGCGATGGTGGAGGAGCTCCCTTAGCTACTGACATCGCAAATGGT 1080
consensus_14340#1 GATTTCTACATGAGGAGCGATGGTGGAGGAGCTCCCTTAGCTACTGACATCGCAAATGGT 166
consensus_14340#2 ------------------------------------------------------------
consensus_14340#3 ------------------------------------------------------------
consensus_14340#0 CATCTAGTATGTGGGTGTGACAACATCGCATACTGCAAGGCGAATTCGACATTCGGGACA 1140
consensus_14340#1 CATCTAGTATGTGGGTGTGACAACATCGCATACTGCAAGGCGAATTCGACATTCGGGACA 226
consensus_14340#2 ------------------------------------------------------------
consensus_14340#3 ------------------------------------------------------------
consensus_14340#0 TGTGTGATACCTCCACCTTCACCGCCGCCGTCGCCTCGGAAGGCACCCAGCGGCGGCAAG 1200
consensus_14340#1 TGTGTGATACCTCCACCTTTACCGCCGCCGTCGCCTCGGAAGGCACCCAGCGGCGGCAAG 286
consensus_14340#2 ----CAAGTGCAGGCGGCAGCTCCAGTTCCAGCGGCCCTATGGCTCGGGTTGTACTACCA 56
consensus_14340#3 ------------------------------------------------------------
consensus_14340#0 GGCACAAGTGCAGGCGGCAGCTCCAGTTCCAGCGGCGCAATGGCTCGGGTTGTACTACCA 1260
consensus_14340#1 GGCACAAGTGCAGGCGGCAGCTCCAGTTCCAGCGGCGCAATGGCTCGGGTTGTACTACCA 346
consensus_14340#2 AAGCTGAGCTTCTTCTTCGGAGTGGCACTTCTGATCCTGGTCATACTCTCTTATTAAGAG 116
consensus_14340#3 ------------------------------------------------------------
consensus_14340#0 AAGCTGAGCTTCTTCTTCGGAGTGGCACTTCTGATCCTGGTCATACTCTCTTATTAAGAG 1320
consensus_14340#1 AAGCTGAGCTTTT---TTGGAGTGGCACTTCTGATCCTGGTCATACTCTCTTATTAAGAG 403
consensus_14340#2 CAGACCCATTCACTTGAGCTTGTGCTGTCTTTGTGCTCTGCTGGTACAAGCACATACTGT 176
consensus_14340#3 ------------------------------------------------------------
consensus_14340#0 CAGACCCATTCACTTGAGCTTGTGCTGTCTTTGTGCTCTGCTGGTACAAGCACATACTGT 1380
consensus_14340#1 CAGACCCATTCACTTGAGCTTGTGCTGTCTTTGTGCTCTGCTGGTACAAGCACATACTGT 463
consensus_14340#2 ACTGCCATTCTGAGGCAAAATTTTCTGCTCTTTTTTTAGCCACCTGTTCCATTGGTTTGT 236
consensus_14340#3 ACTGCCATTCTGAGGCAAAATTTTCTGCTCTTTTTTTAGCCACCTGTTCCATTGGTTTGT 60
consensus_14340#0 ACTGCCATTCTGAGGCAAAATTTTCTGCTCTTTTTTTAGCCACCTGTTCCATTGGTTTGT 1440
consensus_14340#1 ACTGCCATTTTGAGGCAAAATTTTTTGCTCTTTTTTTAGCCACCTGTTCCATTGGTTTTT 523
********* ************** ********************************* *
consensus_14340#2 AACTTCTTTTTCTTTTTTGTTAATGAGAGCTGTAGATGCCAGATTAGCTGGAGAAATTGT 296
consensus_14340#3 AACTTCTTTTTCTTTTTTGTTAATGAGAGCTGTNGATGCCNGATTAGCTGGNGAAATTGT 120
consensus_14340#0 AACTTCTTTTTCTTTTTTGTTAATGAGAGCTGTAGATGCCAGATTAGCTGGAGAAATTGT 1500
consensus_14340#1 AACTTCTTTTTCTTTTTTGTTAATGAGAGCTGTAGATGCCAGATTAGCTGGAGAAATTGT 583
********************************* ****** ********** ********
consensus_14340#2 TCATGTGCCGAGCTGTAGATCATTCCTTTTATTTGAGGCAATATTTTTCTGCATATCAAG 356
consensus_14340#3 TCATGTGCCGAGCTGTNGATCATTCCTTTTATTTGAGGNNATATTTTTCTGCAAAAAAAA 180
consensus_14340#0 TCATGTGCCGAGCTGTAGATCATTCCTTTTATTTGAGGCAATATTTTTCTGCATATCAAG 1560
consensus_14340#1 CCATGTGCCGAGCTGTAGATCATTCCTTTTATTTGAGGCAATATTTTTTTGCATATCAAA 643
*************** ********************* ******** **** * **
consensus_14340#2 TGATCTTATTGCTCATAAAATAACTGCAATCGCATTGTAAAAAAATGTTGTGGTAAGACC 416
consensus_14340#3 AAAAAA------------------------------------------------------ 186
consensus_14340#0 TGATCTTATTGCTCATAAAATAACTGCAATCGCATTGTAAAAAAATGTTGTGGTAAGACC 1620
consensus_14340#1 AAAAAAAAAAA------------------------------------------------- 654
*
consensus_14340#2 TTTTACAGGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 476
consensus_14340#3 ------------------------------------------------------------
consensus_14340#0 TTTTACAGGTGCAAAATATGCCTATTATGCATAGCCAGCAAATGGAACAGATTCTGCATA 1680
consensus_14340#1 ------------------------------------------------------------
consensus_14340#2 AAAAAAAAAAAAAAAAAA------------------------------------------ 494
consensus_14340#3 ------------------------------------------------------------
consensus_14340#0 TGTCATCAGGATTATTCTTGATCTTATGCACTTTATGTTCCAAGAAAAANAAAAAAAAAA 1740
consensus_14340#1 ------------------------------------------------------------
consensus_14340#2 -----
consensus_14340#3 -----
consensus_14340#0 AAAAA 1745
consensus_14340#1 -----
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||