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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14360#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1440 fasta sequence
[TGGACTGAAGGAGTAGAAACTCTCTCCAGTCCGTCTGCCTCTCTCACCACCACCACCGTGCGCTGCTCCAAGGGGGAGATGGCGGTGGTGAAGTGCATCAGGGTCCACGAGCTGGGCGGGCCTGAGGTGTTGAGATGGGAGCAAGTGGAGGTCGGGGAGCCCAAGGAGGGCGAGATCCGGATCAAGAACACCGCCATCGGCGTCAATTTCATCGACGTCTACTACCGCCAGGGGGTCTACTCCGCTCCACTGCCCTTCGTCCCTGGGAGGGAAGCCGTTGGAGTGGTGACCGCTGTAGGTCCTGGCCTGACTGGCAGAAAGGTT-GGGGACGTCGTCGCCTATGCCGGCAATCCCATGGGCTCTTATGCTCAAGAGCAGATTATTCCCGCCTCCGTCGCTGTTCCCCTTCCTCCTTCCATCGACCACAACACTGCTGCCGCTATTATGCTCAAGGGGATGACTGCTCACGTTCTACTTCGCCGTGTTTACAAGGTCCAGAGTGGTG-ATTGTG-TTCTGGTCCACGCTGCTGCCGGT-GGGG---TT-GGATCAC-TCCTTTGTCAATGGGCAAATGCCCTTGGTGCCACTGTCATCGGGACTGTTTCAAATGAGGAGAAGGCTGCACAGGCAGCTGAAGATGGATGCCACCATGTCATCATTTACACAAAGGAAGATGTTGTCACAAGAGTCAAGGAGTTCACAGCTGGGAAAGGTGTCAATGTGGTATATGATTCTGTTGGCAAGGATACATACAAGGGTTCGGTGGAATGCTTGG-CGTGGCGTGGTATGCTGGTGTCGTTTGGGCAGTCGTCAGGTAGGCCTGATCCCATTCCGCTGAGCGATCTGGCAAGCAAGTCGCTGTTGGTAACAAGGCCCAGCCTGATGCATTACACTGCTACCCGCGACGAGTTGCTGGAGTCGGCCGGTGAGGTGTTTGCCAATGTAGGAAGCGGGGTGTTGCGCATCCGTGTGAACCACACATA-TCCATTGTCTCAAGCTGCTCGCGCTCATGCGGATCT-CCAGGCCAGGAAGACGA-CCGGATCCATCCTGCTCATCCCAGATGATGCATGATACTCCAGTACTAGTGTAGGAGTAGTAGTTATTCCAGTACAAAAAGTGTCTCTTCTCCAATGCCGCTGCTGTTTCTTACTTTAGTACTCCTGTATTTTTCATGCATTATCAATCAGGTTCAGGTTTGGTTGCCAGTTGATGTGTGTCTGCGTGCGTTTCGTTGTGGTTTTCATGTTGACAGGACAGGACGTATACTATACATAAATAAAGGGCAGCATCTTTGAAATAAAGATCACTTATACTAAAAAAAATTTGAGTTATTTATTGCTCAACTGGCAATGGGTGTTGCTTGAATAACCTTGGTTCTGTTCCTGCTTACTGTATCTCAACTGGCAAAGAGCAGGTAATATAAGGTTTTTTATTTTAAAAAAAAAA]
[+] EMBL CF277449 [TGGACTGAAGGAGTAGAAACT TTTCAAGTCCGTCTGCCTCTCTCACCACCACCACCGTGCGCTGCTCCAAGGGGGAGATGGCGGTGGTGAAGTGCATCAGGGTCCACGAGCTGGGCGGGCCTGAGGTGTTGAGATGGGAGCAAGTGGAGGTCGGGGAGCCCAAGGAGGGCGAGATCCGGATCAAGAACACCGCCATCGGCGTCAATTTCATCGACGTTTATTATCGCCAGGGGGTCTACTCCGCTCCACTGCCCTTCGTCCCTGGGAGGGAAGCCGTTGGAGTGGTGACCGCTGTAGGTCCTGGCCTGACTGGCAGAAAGGTT GGGGACGTCGTCGCCTATGCCGGCAATCCCATGGGCTCTTATGCTCAAGAGCAGATTATTCCCGCCTCCGTCGCTGTTCCCCTTCCTCCTTCCATCGACCACAACACTGCTGCCGCTATTATGCTCAAGGGGATGACTGCTCACGTTCTACTTCGCCGTGTTTACAAGGTCCAGAGTGGTG ATTGTG TTCTGGTCCACGCTGCTGCCGGTGGGGG TTGGGATCAC T CTTTGTCAATGGGCAAATGCCCTTGGTGCCACTGTCATCGGGACT ]
[+] EMBL CF277268 [TGGACTGAAGGAGTAGAAACTCTCTCCAGTCCGTCTGCCTCTCTCACCACCACCACCGTGCGCTGCTCCAAGGGGGAGATGGCGGTGGTGAAGTGCATCAGGGTCCACGAGCTGGGCGGGCCTGAGGTGTTGAGATGGGAGCAAGTGGAGGTCGGGGAGCCCAAGGAGGGCGAGATCCGGATCAAGAACACCGCCATCGGCGTCAATTTCATCGACGTCTACTACCGCCAGGGGGTCTACTCCGCTCCACTGCCCTTCGTCCCTGGGAGGGAAGCCGTTGGAGTGGTGACCGCTGTAGGTCCTGGCCTGACTGGCAGAAAGGTTGGGGGACGTCGTCGCCTATGCCGGCAATCCCATGGGCTCTTATGCTCAAGAGCAGATTATTCCCGCCTCCGTCGCTGTTCCCCTTCCTCCTTCCATCGACCACAACACTGCTGCCGCTATTATGCTCAAGGGGATGACTGCTCACGTTCTACTTCGCCGTGTTTACAAGGTCCAGAGTGGTGAATTGTGTTTCTGGTCCACGCTGCTGCCGGT GGGGGGTTT GGATCACTTCCTTTGTCAATGGGCAAATGCCCTTGGTGCCACTGTCATCGGGg ]
[+] EMBL CF276356 [ gcctcCTCTCTCCAGTCCGTCTGCCTCTCTCACCACCACCACCGTGCGCTGCTCCAAGGGGGAGATGGCGGTGGTGAAGTGCATCAGGGTCCACGAGCTGGGCGGGCCTGAGGTGTTGAGATGGGAGCAAGTGGAGGTCGAGGAGCCCAAGGAGGGCGAGATCCGGATCAAGAACACCGCCATCGGCGTCAATTT ATCGACGTCTACTACCGCCAGGGGGTCTACTCCGCTCCACTGCCCTTCGTCCCTGGGAGGGAAGCCGTTGGAGTGGTGACCGCTGTAGGTCCTGGCCTGACTGGCAGAAAGGTT GGGGACGTCGTCGCCTATGCCGGCAATCCCATGGGCTCTTATGCTCAAGAGCAGATTATTCCCGCCTCCGTCGCTGTTCCCCTTCCTCCTTCCATCGACCACAACACTGCTGCCGCTATTATGCTCAAGGGGATGACTGCTCACGTTCTACTTCGCCGTGTTTACAAGGTCCAGAGTGGTG ATTGTG TTCTGGTCCAC ]
[+] EMBL AK061143 [ TGCCTCTCTCACCACCACCACCGTGCGCTGCTCCAAGGGGGAGATGGCGGTGGTGAAGTGCATCAGGGTCCACGAGCTGGGCGGGCCTGAGGTGTTGAGATGGGAGCAAGTGGAGGTCGGGGAGCCCAAGGAGGGCGAGATCCGGATCAAGAACACCGCCATCGGCGTCAATTTCATCGACGTCTACTACCGCCAGGGGGTCTACTCCGCTCCACTGCCCTTCGTCCCTGGGAGGGAAGCCGTTGGAGTGGTGACCGCTGTAGGTCCTGGCCTGACTGGCAGAAAGGTT GGGGACGTCGTCGCCTATGCCGGCAATCCCATGGGCTCTTATGCTCAAGAGCAGATTATTCCCGCCTCCGTCGCTGTTCCCCTTCCTCCTTCCATCGACCACAACACTGCTGCCGCTATTATGCTCAAGGGGATGACTGCTCACGTTCTACTTCGCCGTGTTTACAAGGTCCAGAGTGGTG ATTGTG TTCTGGTCCACGCTGCTGCCGGT GGGG TT GGATCAC TCCTTTGTCAATGGGCAAATGCCCTTGGTGCCACTGTCATCGGGACTGTTTCAAATGAGGAGAAGGCTGCACAGGCAGCTGAAGATGGATGCCACCATGTCATCATTTACACAAAGGAAGATGTTGTCACAAGAGTCAAGGAGTTCACAGCTGGGAAAGGTGTCAATGTGGTATATGATTCTGTTGGCAAGGATACATACAAGGGTTCGGTGGAATGCTTGG CGTGGCGTGGTATGCTGGTGTCGTTTGGGCAGTCGTCAGGTAGGCCTGATCCCATTCCGCTGAGCGATCTGGCAAGCAAGTCGCTGTTGGTAACAAGGCCCAGCCTGATGCATTACACTGCTACCCGCGACGAGTTGCTGGAGTCGGCCGGTGAGGTGTTTGCCAATGTAGGAAGCGGGGTGTTGCGCATCCGTGTGAACCACACATA TCCATTGTCTCAAGCTGCTCGCGCTCATGCGGATCT CCAGGCCAGGAAGACGA CCGGATCCATCCTGCTCATCCCAGATGATGCATGATACTCCAGTACTAGTGTAGGAGTAGTAGTTATTCCAGTACAAAAAGTGTCTCTTCTCCAATGCCGCTGCTGTTTCTTACTTTAGTACTCCTGTATTTTTCATGCATTATCAATCAGGTTCAGG ]
[+] EMBL AK069374 [ CTCTCACCACCACCACCGTGCGCTGCTCCAAGGGGGAGATGGCGGTGGTGAAGTGCATCAGGGTCCACGAGCTGGGCGGGCCTGAGGTGTTGAGATGGGAGCAAGTGGAGGTCGGGGAGCCCAAGGAGGGCGAGATCCGGATCAAGAACACCGCCATCGGCGTCAATTTCATCGACGTCTACTACCGCCAGGGGGTCTACTCCGCTCCACTGCCCTTCGTCCCTGGGAGGGAAGCCGTTGGAGTGGTGACCGCTGTAGGTCCTGGCCTGACTGGCAGAAAGGTT GGGGACGTCGTCGCCTATGCCGGCAATCCCATGGGCTCTTATGCTCAAGAGCAGATTATTCCCGCCTCCGTCGCTGTTCCCCTTCCTCCTTCCATCGACCACAACACTGCTGCCGCTATTATGCTCAAGGGGATGACTGCTCACGTTCTACTTCGCCGTGTTTACAAGGTCCAGAGTGGTG ATTGTG TTCTGGTCCACGCTGCTGCCGGT GGGG TT GGATCAC TCCTTTGTCAATGGGCAAATGCCCTTGGTGCCACTGTCATCGGGACTGTTTCAAATGAGGAGAAGGCTGCACAGGCAGCTGAAGATGGATGCCACCATGTCATCATTTACACAAAGGAAGATGTTGTCACAAGAGTCAAGGAGTTCACAGCTGGGAAAGGTGTCAATGTGGTATATGATTCTGTTGGCAAGGATACATACAAGGGTTCGGTGGAATGCTTGG CGTGGCGTGGTATGCTGGTGTCGTTTGGGCAGTCGTCAGGTAGGCCTGATCCCATTCCGCTGAGCGATCTGGCAAGCAAGTCGCTGTTGGTAACAAGGCCCAGCCTGATGCATTACGCTGCTACCCGCGACGAGTTGCTGGAGTCGGCCGGTGAGGTGTTTGCCAATGTAGGAAGCGGGGTGTTGCGCATCCGTGTGAACCACACATA TCCATTGTCTCAAGCTGCTCGCGCTCATGCGGATCT CCAGGCCAGGAAGACGA CCGGATCCATCCTGCTCATCCCAGATGATGCATGATACTCCAGTACTAGTGTAGGAGTAGTAGTTATTCCAGTACAAAAAGTGTCTCTTCTCCAATGCCGCTGCTGTTTCTTACTTTAGTACTCCTGTATTTTTCATGCATTATCAATCAGGTTCAGGTTTGGTTGCCAGTTGATGTGTGTCTGCGTGCGTTTCGTTGTGGTTTTCATGTTGACAGGACAGGACGTATACTATACATAAATAAAGGGCAGCATCTTTGAAATAAAGATCAC ]
[+] EMBL BE230293 [ GACTGGCAGAAAGGTT GGGGACGTCGTCGCCTATGCCGGCAATCCCATGGGCTCTTATGCTCAAGAGCAGATTATTCCCGCCTCCGTCGCTGTTCCCCTTCCTCCTTCCATCGACCACAACACTGCTGCCGCTATTATGCTCAAGGGGATGACTGCTCACGTTCTACTTCGCCGTGTTTACAAGGTCCAGAGTGGTG ATTGTG TTCTGGTCCACGCTGCTGCCGGT GGGG TT GGATCAC TCCTTTGTCAATGGGCAAATGCCCTTGGTGCCACTGTCATCGGGACTGTTTCAAATGAGGAGAAGGCTGCACAGGCAGCTGAAGATGGATGCCACCATGTCATCATTTACACAAAGGAAGATGTTGTCACAAGAGTCAAGGAGTTCACAGCTGGGAAAGGTGTCAATGTGGTATATGATTCTGTTGGCAAGGATACATACAAGGGTTCGGTGGAATGCTTGGCCGTGGCGTGGTATGCTGGTGTCGTTT ]
[-] EMBL CF279092 [ TCACAGCTGGGAAAGGTGTCAATGTGGTATATGATTCTGTTGGCAAGGATACATACAAGGGTTCGGTGGAATGCTTGG CGTGGCGTGGTATGCTGGTGTCGTTTGGGCAGTCGTCAGGTAGGCCTGATCCCATTCCGCTGAGCGATCTGGCAAGCAAGTCGCTGTTGGTAACAAGGCCCAGCCTGATGCATTACACTGCTACCCGCGACGAGTTGCTGGAGTCGGCCGGTGAGGTGTTTGCCAATGTAGGAAGCGGGGTGTTGCGCATCCGTGTGAACCACACATANTCCATTGTCTCAAGCTGCTCGCGCTCATGCGGATCT CCAGGCCAGGAAGACGA CCGGATCCATCCTGCTCACCCCAGATGATGCATGATACTCCAGTACTAGTGTAGGAGTAGTAGTTATTCCAGTACAAAAAGTGTCTCTTCTCCAATGCCGCTGCTGTTTCTTACTTTAGTACTCCTGTATTTTTCATGCATTATCAATCAGGTTCAGGTTTGGTTGCCAGTTGATGTGTGTCTGCGTGCGTTTCGTTGTGGTTTTCATGTTGACAGGACAGGACGTATACTATACATAAATAAAGGGCAGCATCTTTGAAATAAAaaa ]
[-] EMBL CF276357 [ TCAATGTGGTATATGATTCTGTTGGCAAGGATACATACAAGGGTTCGGTGGAATGCTTGG CGTGGCGTGGTATGCTGGTGTCGTTTGGGCAGTCGTCAGGTAGGCCTGATCCCATTCCGCTGAGCGATCTGGCAAGCAAGTCGCTGTTGGTAACAAGGCCCAGCCTGATGCATTACACTGCTACCCGCGACGAGTTGCTGGAGTCGGCCGGTGAGGTGTTTGCCAATGTAGGAAGCGGGGTGTTGCGCATCCGTGTGAACCACACATA TCCATTGTCTCAAGCTGCTCGCGCTCATGCGGATCT CCAGGCCAGGAAGACGA CCGGATCCATCCTGCTCATCCCAGATGATGCATGATACTCCAGTACTAGTGTAGGAGTAGTAGTTATTCCAGTACAAAAAGTGTCTCTTCTCCAATGCCGCTGCTGTTTCTTACTTTAGTACTCCTGTATTTTTCATGCATTATCAATCAGGTTCAGGTTTGGTTGCCAGTTGATGTGTGTCTGCGTGCGTTTCGTTGTGGTTTTCATGTTGACAGGACAGGACGTATACTATACATAAATAAAGGGCAGCATCTTTGAAATAAAaaaa ]
[-] EMBL CF277269 [ GCTGTTGGTAACAAGGCCCAGCCTGATGCATTACACTGCTACCCGCGACGAGTTGCTGGAGTCGGCCGGTGAGGTGTTTGCCAATGTAGGAAGCGGGGTGTTGCGCATCCGTGTGAACCACACATA TCCATTGTCTCAAGCTGCTCGCGCTCATGCGGATCT CCAGGCTAGGAAGACGA CCGGATCCATCCTGCTCATCCCAGATGATGCATGATACTCCAGTACTAGTGTAGGAGTAGTAGTTATTCCAGTACAAAAAGTGT TATTCTCCAATGCCGCTGCTGTTTCTTACTTTAGTACTCCTGTATTTTTCATGCATTATCAATCAGGTTCAGGTTTGGTTGCCAGTTGATGTGTGTCTGCGTGCGTTTCGTTGTGGTTTTCATGTTGACAGGACAGGACGTATACTATACATAAATAAAGGGCAGCATCTTTGAAATAAAaaaaa ]
[+] EMBL CA753347 [ CAGCCTGATGCATTACACTGCTACCCGCGACGAGTTGCTGGAGTCGGCCGGTGAGGTGTTTGCCAATGTAGGAAGCGGGGTGTTGCGCATCCGTGTGAACCACACATA TCCATTGTCTCAAGCTGCTCGCGCTCATGCGGATCT CCAGGCCAGGAAGACGA CCGGATCCATCCTGCTCATCCCAGATGATGCATGATACTCCAGTACTAGTGTAGGAGTAGTAGTTATTCCAGTACAAAAAGTGTCTCTTCTCCAATGCCGCTGCTGTTTCTTACTTTAGTACTCCTGTATTTTTCATGCATTATCAATCAGGTTCAGGTTTGGTTGCCAGTTGATGTGTGTCTGCGTGCGTTTCGTTGTGGTTTTCATGTTGACAGGACAGGACGTATACTATACATAAATAAAGGGCAGCATCTTTGAAATAAAGATCACTTATACTAAAAAAAA ]
[-] EMBL CF277448 [ CAAGCTGCTCGCGCTCATGCGGATCTCCCAGGCCAGGAAGACGACCCGGATCCATCCTGCTCATCCCAGATGATGCATGATACTCCAGTACTAGTGTAGGAGTAGTAGTTATTCCAGTACAAAAAGTGTCTCTTCTCCAATGCCGCTGCTGTTTCTTACTTTAGTACTCCTGTATTTTTCATGCATTATCAATCAGGTTCAGGTTTGGTTGCCAGTTGATGTGTGTCTGCGTGCGTTTCGTTGTGGTTTTCATGTTGACAGGACAGGACGTATACTATACATAAATAAAGGGCAGCATCTTTGAAATAAAGATCACTTATACTATTAGCGATTTGAGTTATTTATTGCTCAACTGGCAATGGGTGTTGCTTGAATAACCTTGGTTCTGTTCCTGCTTACTGTATCTCAACTGGCAAAGAGCAGGTAATATAAGGTTTTTTATTTTAAAAAAAAAA]
consensusID : consensus_14360#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 702 fasta sequence
[GGGGCCCCTTAAGGTGGTGAAGTGCATCAGGGTCCACGAGCTGGGCGGGCCTGAGGTGTTGAGATGGGAGCAAGTGCCCGTCGGGGAGCCCAAGGAGGGCGAGATCCGGATCAAGAACACCGCCATCGGCGTCAATTTCATCGACGTCTACTACCGCCAGGGGGTCTACTCCGCTCCACTGCCCTTCGTCCCTGGGAGGGAAGCCGTTGGAGTGGTGACCGCTGTAGGTCCTGGCCTGACTGGCAGAAAGGTTGGGGACGTCGTCGCCTATGCCGGCAATCCCATGGGCTCTTATGCTCAAGAGCAGATTATTCCCGCCTCCGTCGCTGTTCCCCTTCCTCCTTCCATCGACCACAACACTGCTGCCGCTATTATGCTCAAGGGGATGACTGCTCACGTTCTACTTCGCCGTGTTTACAAGGTCCAGAGTGGTGATTGTGTTCTGGTCCACGCTGCTGCCGGTGGGGTTGGATCACTCCTTTGTCAATGGGCAAATGCCCTTGGTGCCACTGTCATCGGGACTGTTTCAAATGAGGAGAAGGCTGCACAGGCAGCTGAAGATGGATGCCACCATGTCATCATTTACACAAAGGAAGATGTTGTCACAAGAGTCAAGGAGTTCACAGCTGGGAAAGGTGTCAATGTGGTATATGATTCTGTTGGCAAGGATACATACAAGGTACTGTACCGTTGCATCTTGCA]
[+] EMBL CB684638 [GGGGCCCCTTAAGGTGGTGAAGTGCATCAGGGTCCACGAGCTGGGCGGGCCTGAGGTGTTGAGATGGGAGCAAGTGCCCGTCGGGGAGCCCAAGGAGGGCGAGATCCGGATCAAGAACACCGCCATCGGCGTCAATTTCATCGACGTCTACTACCGCCAGGGGGTCTACTCCGCTCCACTGCCCTTCGTCCCTGGGAGGGAAGCCGTTGGAGTGGTGACCGCTGTAGGTCCTGGCCTGACTGGCAGAAAGGTTGGGGACGTCGTCGCCTATGCCGGCAATCCCATGGGCTCTTATGCTCAAGAGCAGATTATTCCCGCCTCCGTCGCTGTTCCCCTTCCTCCTTCCATCGACCACAACACTGCTGCCGCTATTATGCTCAAGGGGATGACTGCTCACGTTCTACTTCGCCGTGTTTACAAGGTCCAGAGTGGTGATTGTGTTCTGGTCCACGCTGCTGCCGGTGGGGTTGGATCACTCCTTTGTCAATGGGCAAATGCCCTTGGTGCCACTGTCATCGGGACTGTTTCAAATGAGGAGAAGGCTGCACAGGCAGCTGAAGATGGATGCCACCATGTCATCATTTACACAAAGGAAGATGTTGTCACAAGAGTCAAGGAGTTCACAGCTGGGAAAGGTGTCAATGTGGTATATGATTCTGTTGGCAAGGATACATACAAGGTACTGTACCGTTGCATCTTGCA]
[+] EMBL CF305149 [ GAACACCGCCATCGGCGTCAATTTCATCGACGTCTACTACCGCCAGGGGGTCTACTCCGCTCCACTGCCCTTCGTCCCTGGGAGGGAAGCCGTTGGAGTGGTGACCGCTGTAGGTCCTGGCCTGACTGGCAGAAAGGTTGGGGACGTCGTCGCCTATGCCGGCAATCCCATGGGCTCTTATGCTCAAGAGCAGATTATTCCCGCCTCCGTCGCTGTTCCCCTTCCTCCTTCCATCGACCACAACACTGCTGCCGCTATTATGCTCAAGGGGATGACTGCTCACGTTCTACTTCGCCGTGTTTACAAGGTCCAGAGTGGTGATTGTGTTCTGGTCCACGCTGCTGCCGGTGGGGTTGGATCACTCCTTTGTCAATGGGCAAATGCCCTTGGTGCCACTGTCATCGGGACTGTTTCAAATGAGGAGAATGCTGCACAGGCAGCTGAAGATGGATGCCACCATGTCATCATTTACACAAAGGAAGATGTTGTCACAAGAGTCAAGGAG ]
[+] EMBL CF279093 [ CCCTGGGAGGGAAGCCGTTGGAGTGGTGACCGCTGTAGGTCCTGGCCTGACTGGCAGAAAGGTTGGGGACGTCGTCGCCTATGCCGGCAATCCCATGGGCTCTTATGCTCAAGAGCAGATTATTCCCGCCTCCGTCGCTGTTCCCCTTCCTCCTTCCATCGACCACAACACTGCTGCCGCTATTATGCTCAAGGGGATGACTGCTCACG ]
consensusID : consensus_14360#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence
[AAGGCAGTAGACCTTGTTCTGTTGTTCAGGTGTTAGTACCACTTCAGTAGTAGGTACTGATGGTGGGCATAATAACTTCATTTTTTAGTAACAAAAAGATGCACAGTTATCTGTATCCAGTGTCTGGTTTTATTTTTAGTTTCAAAGCAATGTGTTTTGGGCTTGAATCAGCTGATTTCATTTTATGGAGTACTCCTATATATGAATGTACTAGCATTAAGAATAGTAGAATGGCATTTGATTGACAGGCATATGTGTTTCAGGGTTCGGTGGAATGCTTGGCGTGGCGTGGTATGCTGGTGTCGTTTGGGCAGTCGTCAGGTAGGCCTGATCCCATTCCGCTGAGCGATCTGGCAAGCAAGTCGCTGTTGGTAACAAGGCCCAGCCTGATGCATTACACTGCTACCCGCGACGAGTTGCTGGAGTCGGCCGGTGAGGTGTTTGCCAATGTAGGAAGCGGGGTGTTGCGCATCCGTGTGAACCACACATATCCATTGTCTCAAGCTGCTCGCGCTCATGCGGATCTCCAGGCCAGGAAGACGACCGGATCCATCCTGCTCATCCCAGATGATGCATGATA]
[+] EMBL CF304371 [AAGGCAGTAGACCTTGTTCTGTTGTTCAGGTGTTAGTACCACTTCAGTAGTAGGTACTGATGGTGGGCATAATAACTTCATTTTTTAGTAACAAAAAGATGCACAGTTATCTGTATCCAGTGTCTGGTTTTATTTTTAGTTTCAAAGCAATGTGTTTTGGGCTTGAATCAGCTGATTTCATTTTATGGAGTACTCCTATATATGAATGTACTAGCATTAAGAATAGTAGAATGGCATTTGATTGACAGGCATATGTGTTTCAGGGTTCGGTGGAATGCTTGGCGTGGCGTGGTATGCTGGTGTCGTTTGGGCAGTCGTCAGGTAGGCCTGATCCCATTCCGCTGAGCGATCTGGCAAGCAAGTCGCTGTTGGTAACAAGGCCCAGCCTGATGCATTACACTGCTACCCGCGACGAGTTGCTGGAGTCGGCCGGTGAGGTGTTTGCCAATGTAGGAAGCGGGGTGTTGCGCATCCGTGTGAACCACACATATCCATTGTCTCAAGCTGCTCGCGCTCATGCGGATCTCCAGGCCAGGAAGACGACCGGATCCATCCTGCTCATCCCAGATGATGCATGATA]
consensusID : consensus_14360#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 573 fasta sequence
[TTTAAANCGGGGAACGGTTGCCNNGGTAACCCCAAGGTTGNAATNAAACCCNTCATTAAGGGGNACCAAAAGNGGGGNTTCNCCGCGGNGGNGGCCGTTAAGAAANAGGGNAATCCCCCGGGCGCAGGGAATTGGCAGGGNTTTGTNCNGGATTTGGGCAGGGGCATAACAATGAAACCCGGGACGAGTGTGGGANTCGCCCGGTGGAGGTGTTNGCCAAATGTAGGGAGCGGGGGTGTGGCGCATCCGTGTGGAACNAAAACATATCCATTGTCTCAAGCTGGTTCGCGNTCATGCGGAATNTCCAGGCCAGGGAAGACGGACCGGATCCATCCTGCTCATCCCAGATGATGCATGATAACTCCAGTACTAGTGTAGGAGTAGTAGTTATTCCAGTACAAAAAGTGTCTCTTCTCCAATGCCGCTGCTGTTTCTTACTTTAGTACTCCTGTATTTTTCATGCATTATCAATCAGGTTCAGGTTTGGTTGCCAGTTGATGTGTGTCTGCGTGCGTTTCGTTGTGGTTTTCATGTTGACAGGACAGGACGTATACTATACATAAATAAAGGGCA]
[-] EMBL BE229143 [TTTAAANCGGGGAACGGTTGCCNNGGTAACCCCAAGGTTGNAATNAAACCCNTCATTAAGGGGNACCAAAAGNGGGGNTTCNCCGCGGNGGNGGCCGTTAAGAAANAGGGNAATCCCCCGGGCGCAGGGAATTGGCAGGGNTTTGTNCNGGATTTGGGCAGGGGCATAACAATGAAACCCGGGACGAGTGTGGGANTCGCCCGGTGGAGGTGTTNGCCAAATGTAGGGAGCGGGGGTGTGGCGCATCCGTGTGGAACNAAAACATATCCATTGTCTCAAGCTGGTTCGCGNTCATGCGGAATNTCCAGGCCAGGGAAGACGGACCGGATCCATCCTGCTCATCCCAGATGATGCATGATAACTCCAGTACTAGTGTAGGAGTAGTAGTTATTCCAGTACAAAAAGTGTCTCTTCTCCAATGCCGCTGCTGTTTCTTACTTTAGTACTCCTGTATTTTTCATGCATTATCAATCAGGTTCAGGTTTGGTTGCCAGTTGATGTGTGTCTGCGTGCGTTTCGTTGTGGTTTTCATGTTGACAGGACAGGACGTATACTATACATAAATAAAGGGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14360#0 TGGACTGAAGGAGTAGAAACTCTCTCCAGTCCGTCTGCCTCTCTCACCACCACCACCGTG 60
consensus_14360#1 ------------------------------------------------------------
consensus_14360#3 ------------------------------------------------------------
consensus_14360#2 ------------------------------------------------------------
consensus_14360#0 CGCTGCTCCAAGGGGGAGATGGCGGTGGTGAAGTGCATCAGGGTCCACGAGCTGGGCGGG 120
consensus_14360#1 -----------GGGGCCCCTTAAGGTGGTGAAGTGCATCAGGGTCCACGAGCTGGGCGGG 49
consensus_14360#3 -------------------------------TTTAAANCGGGGAACGGTTGCCNNGGTAA 29
consensus_14360#2 ------------AAGGCAGTAGACCTTGTTCTGTTGTTCAGGTGTTA-GTACCACTTCAG 47
* * ** *
consensus_14360#0 CCTGAGGTGTTGA-GATGGGAGCAAGTGGAGG----TCGGGGAGCCCAAGGAGGGCGAGA 175
consensus_14360#1 CCTGAGGTGTTGA-GATGGGAGCAAGTGCCCG----TCGGGGAGCCCAAGGAGGGCGAGA 104
consensus_14360#3 CCCCAAG-GTTGN-AATNAAACCCNTCATTAA------GGGGNACCAAAAGNGGGGNTTC 81
consensus_14360#2 TAGTAGGTACTGATGGTGGGCATAATAACTTCATTTTTTAGTAACAAAAAGATGCACAGT 107
* * ** * * * ** * *
consensus_14360#0 TCCG-GATCAAGAACACCGCCATCGGCGTCAATTTCATCGACGTCTACTACCGCCAGGGG 234
consensus_14360#1 TCCG-GATCAAGAACACCGCCATCGGCGTCAATTTCATCGACGTCTACTACCGCCAGGGG 163
consensus_14360#3 NCCGCGGNGGNGGCCGTTAAGAAANAGGGNAATCCCCCGGGCGCAGGGAATTGGCAGGGN 141
consensus_14360#2 TATCTGTATCCAGTGTCTGGTTTTATTTTTAGTTTCAAAGCAATGTGTTTTGGGCTTGAA 167
* * * * * * * *
consensus_14360#0 GTCTACTCCGCTCCA--CTGCCCTTCGTCCCTGGGAG--GGAAGCCGTTGGAGTGGTGAC 290
consensus_14360#1 GTCTACTCCGCTCCA--CTGCCCTTCGTCCCTGGGAG--GGAAGCCGTTGGAGTGGTGAC 219
consensus_14360#3 TTTGTNCNGGATTTGGGCAGGGGCATAACAATGAAACCCGGGACGAGTGTGGGANTCGCC 201
consensus_14360#2 --TCAGCTGATTTCATTTTATGGAGTACTCCTATATA--TGAATGTACTAGCATTAAGAA 223
* * * * * *
consensus_14360#0 CGCTGTA--GGTCCTGGCCTGACTGGCAGAAAGGTTGGGGACGTCGTCGCCTATGCCGGC 348
consensus_14360#1 CGCTGTA--GGTCCTGGCCTGACTGGCAGAAAGGTTGGGGACGTCGTCGCCTATGCCGGC 277
consensus_14360#3 CGGTGGA--GGTGTTNGCCAAAT--GTAGGGAG--CGGGGGTGTGG-CGCATCCGTGTGG 254
consensus_14360#2 TAGTAGAATGGCATTTGATTGACAGGCATATGTGTTTCAGGGTTCGGTGGA-ATGCTTGG 282
* * ** * * * * * * * * * * *
consensus_14360#0 AATCCCATGGGCT-CTTATGCTCAAGAGCAGATTATTCCCGCCTCCGTCGCTGTTCCCCT 407
consensus_14360#1 AATCCCATGGGCT-CTTATGCTCAAGAGCAGATTATTCCCGCCTCCGTCGCTGTTCCCCT 336
consensus_14360#3 AACNAAAACATAT-CCATTGTCTCA----AGCTGGTTCGCGNTCATG-CGGAATNTCCAG 308
consensus_14360#2 CGTGGCGTGGTATGCTGGTGTCGTT---TGGGCAGTCGTCAGGTAGGCCTGATCCCATTC 339
* * ** * * * * *
consensus_14360#0 TCCTCCTTCCATCGACCACAACACTGCTGCCGCTATTATGCTCAAGGGGATGACTGCTCA 467
consensus_14360#1 TCCTCCTTCCATCGACCACAACACTGCTGCCGCTATTATGCTCAAGGGGATGACTGCTCA 396
consensus_14360#3 GCCAGGGAAGACGGACCGGATCCATCCTGCTCATCCCAGAT---GATGCATGATAACTCC 365
consensus_14360#2 CGCTGAGCGATCTGGCAAGCAAGTCGCTGTTGGTAACAAGGCCCA--GCCTGATGCATTA 397
* * * *** * * * *** *
consensus_14360#0 CGTTCTACTTCGCCGTGTTTACAAGGTCCAGAGTGGTGATTGTGTTCTGGTCCACGCTGC 527
consensus_14360#1 CGTTCTACTTCGCCGTGTTTACAAGGTCCAGAGTGGTGATTGTGTTCTGGTCCACGCTGC 456
consensus_14360#3 AGTACTAGTGTAGGAGTAGTAGTTATTCCAGTACAAAAAGTGTCTCTTCTCCAATGCCGC 425
consensus_14360#2 CACTGCTACCCGCGACGAGTTGCTGGAGTCGGCCGGTGAG-GTGTTT--GCCAATGTAGG 454
* * * ** * * * * *
consensus_14360#0 TGCCGGTGGGGTTGGATCACTCCTTTGTCAATGGGCAAATGCCCTTGGTG-CCACTGTCA 586
consensus_14360#1 TGCCGGTGGGGTTGGATCACTCCTTTGTCAATGGGCAAATGCCCTTGGTG-CCACTGTCA 515
consensus_14360#3 TGCTGTT-------------TCTTACTTTAGTACTCCTGTATTTTTCATG-C-ATTATCA 470
consensus_14360#2 AAGCGGGG--------------TGTTGCGCATCCGTGTGAACCACACATATCCATTGTCT 500
* * * * * * **
consensus_14360#0 TCGGGACTGTTTCAAATGAGGAGAAGGCTGCACAGGCAGCTGAAGATGGATGCCACCATG 646
consensus_14360#1 TCGGGACTGTTTCAAATGAGGAGAAGGCTGCACAGGCAGCTGAAGATGGATGCCACCATG 575
consensus_14360#3 ----ATCAGGTTCAGGTTTGGTTGCCAGTTGATGTGTGTCTGCG--TGCGTTTCGTTGTG 524
consensus_14360#2 C--AAGCTGCTCGCGCTCATGCGGAT-CTCCAGGCCAGGAAGACGACCGGATCCATCCTG 557
* * * * * * * * * **
consensus_14360#0 -TCATCATTTACACAAAGGAAGATGT-TGTCACA-AGAGTCAAGGAGTTCACAGCTGGGA 703
consensus_14360#1 -TCATCATTTACACAAAGGAAGATGT-TGTCACA-AGAGTCAAGGAGTTCACAGCTGGGA 632
consensus_14360#3 GTTTTCATGTTGACAGGACAGGACGTATACTATACATAAATAAAGGGCA----------- 573
consensus_14360#2 CTCATC--CCAGATGATGCATGATA----------------------------------- 580
* ** * * **
consensus_14360#0 AAGGTGTCAATGTGGTATATGATTCTGTTGGCAAGGATACATACAAGGGTTCGGTGGAAT 763
consensus_14360#1 AAGGTGTCAATGTGGTATATGATTCTGTTGGCAAGGATACATACAAGGTACTGTACCGTT 692
consensus_14360#3 ------------------------------------------------------------
consensus_14360#2 ------------------------------------------------------------
consensus_14360#0 GCTTGGCGTGGCGTGGTATGCTGGTGTCGTTTGGGCAGTCGTCAGGTAGGCCTGATCCCA 823
consensus_14360#1 GCATCTTGCA-------------------------------------------------- 702
consensus_14360#3 ------------------------------------------------------------
consensus_14360#2 ------------------------------------------------------------
consensus_14360#0 TTCCGCTGAGCGATCTGGCAAGCAAGTCGCTGTTGGTAACAAGGCCCAGCCTGATGCATT 883
consensus_14360#1 ------------------------------------------------------------
consensus_14360#3 ------------------------------------------------------------
consensus_14360#2 ------------------------------------------------------------
consensus_14360#0 ACACTGCTACCCGCGACGAGTTGCTGGAGTCGGCCGGTGAGGTGTTTGCCAATGTAGGAA 943
consensus_14360#1 ------------------------------------------------------------
consensus_14360#3 ------------------------------------------------------------
consensus_14360#2 ------------------------------------------------------------
consensus_14360#0 GCGGGGTGTTGCGCATCCGTGTGAACCACACATATCCATTGTCTCAAGCTGCTCGCGCTC 1003
consensus_14360#1 ------------------------------------------------------------
consensus_14360#3 ------------------------------------------------------------
consensus_14360#2 ------------------------------------------------------------
consensus_14360#0 ATGCGGATCTCCAGGCCAGGAAGACGACCGGATCCATCCTGCTCATCCCAGATGATGCAT 1063
consensus_14360#1 ------------------------------------------------------------
consensus_14360#3 ------------------------------------------------------------
consensus_14360#2 ------------------------------------------------------------
consensus_14360#0 GATACTCCAGTACTAGTGTAGGAGTAGTAGTTATTCCAGTACAAAAAGTGTCTCTTCTCC 1123
consensus_14360#1 ------------------------------------------------------------
consensus_14360#3 ------------------------------------------------------------
consensus_14360#2 ------------------------------------------------------------
consensus_14360#0 AATGCCGCTGCTGTTTCTTACTTTAGTACTCCTGTATTTTTCATGCATTATCAATCAGGT 1183
consensus_14360#1 ------------------------------------------------------------
consensus_14360#3 ------------------------------------------------------------
consensus_14360#2 ------------------------------------------------------------
consensus_14360#0 TCAGGTTTGGTTGCCAGTTGATGTGTGTCTGCGTGCGTTTCGTTGTGGTTTTCATGTTGA 1243
consensus_14360#1 ------------------------------------------------------------
consensus_14360#3 ------------------------------------------------------------
consensus_14360#2 ------------------------------------------------------------
consensus_14360#0 CAGGACAGGACGTATACTATACATAAATAAAGGGCAGCATCTTTGAAATAAAGATCACTT 1303
consensus_14360#1 ------------------------------------------------------------
consensus_14360#3 ------------------------------------------------------------
consensus_14360#2 ------------------------------------------------------------
consensus_14360#0 ATACTAAAAAAAATTTGAGTTATTTATTGCTCAACTGGCAATGGGTGTTGCTTGAATAAC 1363
consensus_14360#1 ------------------------------------------------------------
consensus_14360#3 ------------------------------------------------------------
consensus_14360#2 ------------------------------------------------------------
consensus_14360#0 CTTGGTTCTGTTCCTGCTTACTGTATCTCAACTGGCAAAGAGCAGGTAATATAAGGTTTT 1423
consensus_14360#1 ------------------------------------------------------------
consensus_14360#3 ------------------------------------------------------------
consensus_14360#2 ------------------------------------------------------------
consensus_14360#0 TTATTTTAAAAAAAAAA 1440
consensus_14360#1 -----------------
consensus_14360#3 -----------------
consensus_14360#2 -----------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||