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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14362#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1233 fasta sequence
[TCGCGTGAAGCGCAGCAAGGGGCCGACGGGAGATCTAGGGTTTCGCCGCAGGCTCCCCTTCGGCCGGCCGGCCGCCGCCTGTCCGGCCCCGCTCGGCGCCGCCCCTGTTGGTCCCCGCCCGTCACTGCCCAGCGCCGCCCCACCCGACCCCGCCGCCACCCGACGCCGCCCCTGCTCGTCCCGCCCGACGACGCCGCCCCTGTTCCCGTTTCTCTCCGGCCATCTTCCCACAGGCCACACTGTCTCTCCCTCTCCCTCCGCCTGCAGCTGTCGCACGCCATTTTCCTCTCCCTCCGACCGTCGATAGCTACCGGGGCTGCGGGGCCCCGCAGGGGCCGGAGGCGGGGCCGTTCCTAGAGGCCCCACCTGCGCCGGCGCCGCCGCAGCAGCAGCAACGATGAGCAAGAGCGGCGGCGCGGCGGCGGGGCCGACGGCGGCGGCCGCGGCAG-CCGCGGTGCAGAAGCAGAAGACGCTTCTCCAGAAGGCTGACGCCGACGTCTCCAGCCTCGTTGACAACTTCGCCGCCCTCATCAACATCGCGCGCGTCAACGACCCGCCGGTGCGCAACACGCAGGAGGCCTTCCAGATGGACATGCGCGGCTCCCGCATGGTACATTCAGCTGATTCTCTGTTGAAACTAGTGTCAGAGCTTAAGAGAACAGCTATCTTTTCTGGGCTTGCTTCTTTAACTGAAAATGTGGATAGGCGGATTGAAATCTTTAGTCAACAAGTTGAAGGAACAGAGAGAATGCTGGAGAGGATTGGGCAGGAAGCAGCAGGAAGCCTCAAAGAGTTGGAGGCACATTACTACTCATCTGTTGTGCGAACACCACCGGATGAATGAGGCTTTGGGAGGAAGTCTGAGAGGATGGTGGTTCAGATACAGAGTGAATGAGCAGACATGTACAAGATGATGGCTTTTTGCAGGAGCAACAAATGTTGATCTCTGAACCATTGTATATTGCTGATGTAACCATTTGGTCAAGGAGTCCTGGTGTGGCAGCTCACATTTATTTTTATAGCTCAAGTGAATCATGACATAGTTTCATCTTTTTCTTTTTTTATTGTCAAATTTCACTACTATGACTGTATTTAGTTGTCTCTGTATTGTCAAGTGACCTCAAGCTTTGTTGGGTGATGCCTCCTTGCCTTAAACCGGATACAGGCCTTGATGATACTGCAATATTTAGGTTTTAATGATTAATCAATGTGGTTTTCGCGTACCATAAAGGG]
[+] EMBL AK120540 [TCGCGTGAAGCGCAGCAAGGGGCCGACGGGAGATCTAGGGTTTCGCCGCAGGCTCCCCTTCGGCCGGCCGGCCGCCGCCTGTCCGGCCCCGCTCGGCGCCGCCCCTGTTGGTCCCCGCCCGTCACTGCCCAGCGCCGCCCCACCCGACCCCGCCGCCACCCGACGCCGCCCCTGCTCGTCCCGCCCGACGACGCCGCCCCTGTTCCCGTTTCTCTCCGGCCATCTTCCCACAGGCCACACTGTCTCTCCCTCTCCCTCCGCCTGCAGCTGTCGCACGCCATTTTCCTCTCCCTCCGACCGTCGATAGCTACCGGGGCTGCGGGGCCCCGCAGGGGCCGGAGGCGGGGCCGTTCCTAGAGGCCCCACCTGCGCCGGCGCCGCCGCAGCAGCAGCAACGATGAGCAAGAGCGGCGGCGCGGCGGCGGGGCCGACGGCGGCGGCCGCGGCAG CCGCGGTGCAGAAGCAGAAGACGCTTCTCCAGAAGGCTGACGCCGACGTCTCCAGCCTCGTTGACAACTTCGCCGCCCTCATCAACATCGCGCGCGTCAACGACCCGCCGGTGCGCAACACGCAGGAGGCCTTCCAGATGGACATGCGCGGCTCCCGCATGGTACATTCAGCTGATTCTCTGTTGAAACTAGTGTCAGAGCTTAAGAGAACAGCTATCTTTTCTGGGCTTGCTTCTTTAACTGAAAATGTGGATAGGCGGATTGAAATCTTTAGTCAACAAGTTGAAGGAACAGAGAGAATGCTGGAGAGGATTGGGCAGGAAGCAGCAGGAAGCCTCAAAGAGTTGGAGGCACATTACTACTCATCTGTTGTGCGAACACCACCGGATGAATGAGGCTTTGGGAGGAAGTCTGAGAGGATGGTGGTTCAGATACAGAGTGAATGAGCAGACATGTACAAGATGATGGCTTTTTGCAGGAGCAACAAATGTTGATCTCTGAACCATTGTATATTGCTGATGTAACCATTTGGTCAAGGAGTCCTGGTGTGGCAGCTCACATTTATTTTTATAGCTCAAGTGAATCATGACATAGTTTCATCTTTTTCTTTTTTTATTGTCAAATTTCACTACTATGACTGTATTTAGTTGTCTCTGTATTGTCAAGTGACCTCAAGCTTTGTTGGGTGATGCCTCCTTGCCTTAAACCGGATACAGGCCTTGATGATACTGCAATA ]
[+] EMBL CB645565 [ AGCAACCGTACAACGGGAGATCTAGGGTTTCGCCGCAGGCTCCCCTTCGGCCGGCCGGCCGCCGCCTGTCCGGCCCCGCTCGGCGCCGCCCCTGTTGGTCCCCGCCCGTCACTGCCCAGCGCCGCCCCACCCGACCCCGCCGCCACCCGACGCCGCCCCTGCTCGTCCCGCCCGACGACGCCGCCCCTGTTCCCGTTTCTCTCCGGCCATCTTCCCACAGGCCACACTGTCTCTCCCTCTCCCTCCGCCTGCAGCTGTCGCACGCCATTTTCCTCTCCCTCCGACCGTCGATAGCTACCGGGGCTGCGGGGCCCCGCAGGGGCCGGAGGCGGGGCCGTTCCTAGAGGCCCCACCTGCGCCGGCGCCGCCGCAGCAGCAGCAACGATGAGCAAGAGCGGCGGCGCGGCGGCGGGGCCGACGGCGGCGGCCGCGGCAG CCGCGGTGCAGAAGCAGAAGACGCTTCTCCAGAAGGCTGACGCCGACGTCTCCAGCCTCGTTGACAACTTCGCCGCCCTCATCAACATCGCGCGCGTCAACGACCCGCCGGTGCGCAACACGCAGGAGGCCTTCCAGATGGACATGCGCGGCTCCCGCATGGTACATTCAGCTGATTCTCTGTTGAAACTAGTGTCAGAGCTTAAGAGAACAGCTATCTTTTCTGGGCTTGCTTCTTTAACTGAAAATGTGGATAGGCGGATTGAAATCTTTAGTCAACAAGTTGAAGGAACAGAGAGAATGCTGGAGAGGATTGGGCAGGAAGCAGCAGGAAGCCTCAAAGAATTGGAGGCACATTAC ]
[+] EMBL CB661349 [ GCCGCAGGCTCCCCTTCGGCCGGCCGGCCGCCGCCTGTCCGGCCCCGCTCGGCGCCGCCCCTGTTGGTCCCCGCCCGTCACTGCCCAGCGCCGCCCCACCCGACCCCGCCGCCACCCGACGCCGCCCCTGCTCGTCCCGCCCGACGACGCCGCCCCTGTTCCCGTTTCTCTCCGGCCATCTTCCCACAGGCCACACTGTCTCTCCCTCTCCCTCCGCCTGCAGCTGTCGCACGCCATTTTCCTCTCCCTCCGACCGTCGATAGCTACCGGGGCTGCGGGGCCCCGCAGGGGCCGGAGGCGGGGCCGTTCCTAGAGGCCCCACCTGCGCCGGCGCCGCCGCAGCAGCAGCAACGATGAGCAAGAGCGGCGGCGCGGCGGCGGGGCCGACGGCGGCGGCCGCGGCAG CCGCGGTGCAGAAGCAGAAGACGCTTCTCCAGAAGGCTGACGCCGACGTCTCCAGCCTCGTTGACAACTTCGCCGCCCTCATCAACATCGCGCGCGTCAACGACCCGCCGGTGCGCAACACGCAGGAGGCCTTCCAGATGGACATGCGCGGCTCCCGCATGGTACATTCAGCTGATTCTCTGTTGAAACTAGTGTCAGAGCTTAAGAGAACAGCTATCTTTTCTGGGCTTGCTTCTTTAACTGAAAATGTGGATAGGCGGATTGAAATCTTTAGTCAACAAGTTGAAGGAACAGAGAGAATGCTGGAGAGGATTGGGCAGGAAGCATCATGAAGCCTCAAAGAGTTGGAGGCACATTACTACTCATCTGTTGT ]
[-] EMBL CB645566 [ AACGATGAGCAAGAGCGGCGGCGCGGCGGCGGGGCCGACGGCGGCGGCCGCGGCAG CCGCGGTGCAGAAGCAGAAGACGCTTCTCCAGAAGGCTGACGCCGACGTCTCCAGCCTCGTTGACAACTTCGCCGCCCTCATCAACATCGCGCGCGTCAACGACCCGCCGGTGCGCAACACGCAGGAGGCCTTCCAGATGGACATGCGCGGCTCCCGCATGGTACATTCAGCTGATTCTCTGTTGAAACTAGTGTCAGAGCTTAAGAGAACAGCTATCTTTTCTGGGCTTGCTTCTTTAACTGAAAATGTGGATAGGCGGATTGAAATCTTTAGTCAACAAGTTGAAGGAACAGAGAGAATGCTGGAGAGGATTGGGCAGGAAGCAGCAGGAAGCCTCAAAGAGTTGGAGGCACATTACTACTCATCTGTTGTGCGAACACCACCGGATGAATGAGGCTTTGGGAGGAAGTCTGAGAGGATGGTGGTTCAGATACAGAGTGAATGAGCAGACATGTACAAGATGATGGCTTTTTGCAGGAGCAACAAATGTTGATCTCTGAACCATTGTATATTGCTGATGTAACCATTTGGTCAAGGAGTCCTGGTGTGGCAGCTCACATTTATTTTTATAGCTCAAGTGAATCATGACATAGTTTCATCTTTTTCTTTTTTTATTGTCAAATTTCACTACTATGACTGTATTTAGTTGTCTCTGTATTGTCAAGTGACCTCAAGCTTTGTTGGGTGATGCCTCCTTGCCTTAAACCGGATACAGGCCTTGATGATACTGCAATATTTAGGTTTTAATGATTAATCAATGTGGTTTTCGCGTACCATAAAGGG]
[-] EMBL CB661350 [ CGGCAGTCCGCGGTGCAGAAGCAGAAGACGCTTCTCCAGAAGGCTGACGCCGACGTCTCCAGCCTCGTTGACAACTTCGCCGCCCTCATCAACATCGCGCGCGTCAACGACCCGCCGGTGCGCAACACGCAGGAGGCCTTCCAGATGGACATGCGCGGCTCCCGCATGGTACATTCAGCTGATTCTCTGTTGAAACTAGTGTCAGAGCTTAAGAGAACAGCTATCTTTTCTGGGCTTGCTTCTTTAACTGAAAATGTGGATAGGCGGATTGAAATCTTTAGTCAACAAGTTGAAGGAACAGAGAGAATGCTGGAGAGGATTGGGCAGGAAGCAGCAGGAAGCCTCAAAGAGTTGGAGGCACATTATTACTCATCTGTTGTGCGAACACCACCGGATGAATGAGGCTTTGGGAGGAAGTCTGAGAGGATGGTGGTTCAGATTCAGAGTGAATGAGCAGACATGTCCAAGATGATGGCTTTTTGCAGGAGCAACAAATGTTGATCTATGAACCATTGTATATTGTTGATGTAACCATTTGGTCAAGGAGTCCTGGTGTGGCAGCTCACATTTATTTTTATAGCTCAAGTGAATCATGACATAGTTTCATCTTTTTCTTTTTTTATCGTCAAATTTCTCTACTATGACTGTATTTAGTTGTCTCGGTATTGTCAAGTGACGTCAAGCTTTGTTGGG ]
consensusID : consensus_14362#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 816 fasta sequence
[CCTAGGTTGGTCCATTTNTAGTAGATCTTTTGTAGAACCATCTAATGAAGAAATTCTGGATGTAAATCATGATTTTTGCAGCTATTGCTTGCTTAATCTGCAGACTACTGATTTTTGCTTCTACTATAGCTACTATTGAATTCAGTTTTTTGCTTGCTCAATCT--TATGTGTCCTAATTTCATTTTGATATCTGAAGCACTGCTAGTATTAGTCTCATATGCATGTCCATGTTTCTAGCACTGCTAGCTATTAGGCAAAGCACACAATACAGCTTACAAACAATCACTTGTCAAACTGAAAACTTGGTAAAAATGTTGCCAAGGATCAATAGTTGGCTGGTTCCAGGAAATTTGAGACAATTGCTCACTGCACAAAAGCATTGCCTAGATTATTGCATTTTACAACTGAAAACTGAAGGAAACTTCTTTCTTCTTTACAGGCTTTGGGAGGAAGTCTGAGAGGATGGTGGTTCAGATACAGAGTGAATGAGCAGACATGTACAAGATGATGGC-TTTT-GCAGGAGCAACAAATGTTGATCTTTGAACCATTGTATATTGCTGATGTAACCATTTGGTCAAGGAGTCCTGGTGTGGCAGCTCACATTTATTTTTATAGCTCAAGTGAATCATGACATAGTTTCATCTTTTTCTTTTTTTATTGTCAAATTTCACTACTATGACTGTATTTAGTTGTCTCTGTATTGTCAAGTGACCTCAAGCTTTGTTGGGTGATGCCTCCTTGCCTTAAACCGGATACAGGCCTTGATGATACTGCAATATTTTTGTTTTAATGATTAATCAATGTGGTTTTCGCGTA]
[-] EMBL CB660108 [CCTAGGTTGGTCCATTTNTAGTAGATCTTTTGTAGAACCATCTAATGAAGAAATTCTGGATGTAAATCATGATTTTTGCAGCTATTGCTTGCTTAATCTGCAGACTACTGATTTTTGCTTCTACTATAGCTACTATTGAATTCAGTTTTTTGCTTGCTCAATCT TATGTGTCCTAATTTCATTTTGATATCTGAAGCACTGCTAGTATTAGTCTCATATGCATGTCCATGTTTCTAGCACTGCTAGCTATTAGGCAAAGCACACAATACAGCTTACAAACAATCACTTGTCAAACTGAAAACTTGGTAAAAATGTTGCCAAGGATCAATAGTTGGCTGGTTCCAGGAAATTTGAGACAATTGCTCACTGCACAAAAGCATTGCCTAGATTATTGCATTTTACAACTGAAAACTGAAGGAAACTTCTTTCTTCTCTACAGGCTTTGGGAGGAAGTCTGAGAGGATGGTGGTTCAGATACAGAGTGAATGAGCAGACATGTACAAGATGATGGCTTTTT GCAGGAGCAACAAATGTTGATCTCTGAACCATTGTATATTGCTGATGTAACCATTTGGTCAAGGAGTCCTGGTGTGGCAGCTCACATTTATTTTTATAGCTCAAGTGAATCATGACATAGTTTCATCTTTTTCTTTTTTTATTGTCAAATTTCACTACTATGACTGTATTTAGTTGTCTCTGTATTGTCAAGTGACCTCAAGCTTTGTTGGGTGATGCCTCCTTGCCTTAAACCGGATACAGGCCTTGATGATACTGCAATATTGGTGTTTTAATGATTAATCAATGTGGTTTTCGCGTA]
[-] EMBL CB633075 [ TGATTTTTGCAGCTATTGCTTGCTTAATCTGCAGACTACTGATTTTTGCTTCTATTATAGCTACTATTGAATTCAGTTTTTTGCTTGCTCAATCTTATATGTGTCCTAATTTCATTTTGATATCTGAAGCACAGCTAGCATTAGTCTCATATGCATGTCCATGTTTCTAGCACTGCTAGCTATTAGGCAAAGCACACAATACAGCTTACAAACAATCACTTGTCAAACTGAAAACTTGGTAAAAATGTTGCCAAGGATCAATAGTTGGCTGGTTTCAGGAAATTTGAGACAATTGCTCACTGCACAAAAGCATTGCCTAAATTATTGCATTTTACAACTGAAAACTGAAGGAAACTTCTTTTTTCTTTACAGGCTTTGGGAGGAAGTTTGAGAGGATGGTGGTTCAGATACAGAGTGAATGAGCAGACATGTACAAGATGATGGC TTTT GCAGGAGCAACAAATGTTGATCTTTGAACCATTGTATATTGCTGATGTAACCATTTGGTTTAGGAGT GGGTGTGGCAGCTCACATTTATTTTTATAGCTCAAGTGAATCATGACATAGTTTCATCTTTTTCTTTTTTTATTTTCAAATTTCACTACTATGACTGTATTTAGTTGTCTCTGTATTGTCAAGTGACCTCAAGCTTTGTTGGGTGATGCCTCCTTGCCTTAAACCGGATACAGGCCTTGATGATACTGCAATAATTTTGTTTTAATGATTAATCAATGTGGTT ]
[-] EMBL CB660185 [ ACAATACAGCGTACAAACAATCTCTTGTCAATCTGAAACCGTGGTAAAAATGTTGCCAAGGATCAATAGTTGGCTGGTTCCAGGAAATTCGAGACAATTGCTCACCGCACAAAAGCATTCCCTAGATTATTGCATTTTACAAGTGAAAACGGAAGGAAACTTCTTTCTTCTTTACAGGCTTTGGGAGGAAGTCTGAGAGGATGGTGGTTCAGATACAGAGTGAATGAGCAGACATGTACAAGAGGATGGC TTTTGGCAGGAGCAACAAATGTTGATTTTTGAACCATTGTATATTGGTGATGTAACCATTTGGTCAAGGAGTCCTGGTGTGGCAGCTCACATTTATTTTTATAGCTCAAGAGAATCATGTCATAGTTTCATCTTTTTCTTTTTTTATTGTCAAATTTCAATACTATGCCTGTATTTAGTTGTCTCTGTATTGTCAAGTGGCCTCAAGCTTTGTTGGGTGATCCC ]
[+] EMBL AA751042 [ TCAAGTGACCTCAAGCTTTGTTGGGTGATTCCTCCTTGCCTTAAACCGGATACAGGCCTTGATGATACTGC ATATTTTTGTTTTAATGATTAATCAATG ]
consensusID : consensus_14362#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence
[CGTCATCGCCGGGAAATATTCAGCTTCTCTGGTGGCCGAGGAAAAAATCCTCTCGACGCAGCGACGCAATGAGAGGGGGCCTGCGGCGGGGACGGCTGCACGGCGCGGCGCGACTACGACGTGACGGCAACGGCACGCTCTCTCCTCCGGTGGCCACCTTCTCCCCGGCTTTTGGAGGAAGTCTGAGAGGATGGTGGTTCAGATACAGAGTGAATGAGCAAACATGTACAAGATGATGGCTTTTTGCAGGAGCAACAAATGTTGATCTCTGAACCTTGTATATTGCTGATGTAACCATTTGGTCTGGGAGTCCTGGTGTGGCAGCTCACATTTATTTTTATAGCTCAAGTGAATCATGACATAGTTTCATCTTTTTCTTTTTTTATTGTCAAATTTCACTACTATGACTGTATTTAGTTGTCTCTGTATTTGTCAGTGACCTCAAGCTTTGTTGGGTGATGCCTCCTTGCCTTAAACCGGATACAGGCCTTGATGATACTGCAATATTTTTGTTTTAATGATTAATCATGTGATTTTCGCGTAAAAA]
[+] EMBL BI798565 [CGTCATCGCCGGGAAATATTCAGCTTCTCTGGTGGCCGAGGAAAAAATCCTCTCGACGCAGCGACGCAATGAGAGGGGGCCTGCGGCGGGGACGGCTGCACGGCGCGGCGCGACTACGACGTGACGGCAACGGCACGCTCTCTCCTCCGGTGGCCACCTTCTCCCCGGCTTTTGGAGGAAGTCTGAGAGGATGGTGGTTCAGATACAGAGTGAATGAGCAAACATGTACAAGATGATGGCTTTTTGCAGGAGCAACAAATGTTGATCTCTGAACCTTGTATATTGCTGATGTAACCATTTGGTCTGGGAGTCCTGGTGTGGCAGCTCACATTTATTTTTATAGCTCAAGTGAATCATGACATAGTTTCATCTTTTTCTTTTTTTATTGTCAAATTTCACTACTATGACTGTATTTAGTTGTCTCTGTATTTGTCAGTGACCTCAAGCTTTGTTGGGTGATGCCTCCTTGCCTTAAACCGGATACAGGCCTTGATGATACTGCAATATTTTTGTTTTAATGATTAATCATGTGATTTTCGCGTAAAAA]
consensusID : consensus_14362#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 515 fasta sequence
[CTCTCGACGCAGCGACGCAACGAGAGGGGGCGCTGCGGCGGGGACGGCTGCACGGCGCGGCGCGACTCCGACGCGACGGCGACGGCACGCTCTCTCCTCCGGCAGTTGACTCCTCCGGTGGTCACCTTCTC-CCCTGCTTTGGGAGGAAGTCTGAGAGGATGGTGGTTCAGATACAGAGTGAATGAGCAGACATGTACAAGATGATGGCTTTTGCAGGAGCAACAAATGTTGATCTCTGAACCATTGTATATTGCTGATGTAACCATTTGGTCTAGGAGT-GGGTGTGGCAGCTCACATTTATTTTTATAGCTC-AAGTGAATCATGACATAGTTTCATCTTTTTCTTTTTTTATTTTCAAATTTCACTACTATGACTGTATTTAGTTGTCTCTGTATTGTCAAGTGACCTCAAGCTTTGTTGGGTGATGCCTCCTTGCCTTAAACCGGATACAGGCCTTGATGATACTGCAATAATTTTGTTTTAATGATTAATCAATGTGGTTTTCGCGTAAAAAA]
[+] EMBL OS1030A [CTCTCGACGCAGCGACGCAACGAGAGGGGGCGCTGCGGCGGGGACGGCTGCACGGCGCGGCGCGACTCCGACGCGACGGCGACGGCACGCTCTCTCCTCCGGCAGTTGACTCCTCCGGTGGTCACCTTNTC CCCTGCTTTGGGAGGAAGTCTGAGAGGATGGTGGTTCAGATACAGAGTGAATGAGCAGACATGTACAAGATGATGGCTTTTGCAGGAGCAACAAATGTTGATCTCTGAACCATTGTATATTGCTGATGTAACCATTTGGTCTAGGAGTNGGGTGTGGCAGCTCACATTTATTTTTATAGCTCAAAGTGAATCATGA ]
[+] EMBL D42632 [CTCTCGACGCAGCGACGCAACGAGAGGGGGCGCT C GC GGGACGGCTGCACGGCGCGGC CGACTCCGA CNAANGCGA NGCACGCTCTCTCCTCCGGCAGTTGACTCCTCCGGTGGTCACCTTCTC CCCTGCTTTGGGAGGAAGTCTGAGAGGATGGTGGTTCAGATACAGAGTGAATGAGCAGACATGTACAAGATGATGGCTTTTGCAGGAGCAACAAATGTTGATCTCTGAACCATTGTATATTGCTGATGTAACCATTTGGTCTAGGAGT GGGGGTG ]
[+] EMBL OSC30961 [ TCTCGACGCAGCGACGCAACGAGAGGGGGCGCTGCGGCGGGGACGGCTGCACGGCGCGGCGCGACTCCGACGCGACGGCGACGGCACGCTCTCTCCTCCGGCAGTTGACTCCTCCGGTGGTCACCTTCTC CCCTGCTTTGGGAGGAAGTCTGAGAGGATGGTGGTTCAGATACAGAGTGAATNAGCAGACATGTACAAGATGATGGCTTTTGCAGGAGCAACAAATGTTGATCTCTGAACCATTGTATATTGCTGATGTAACCATTTGGTCTAGGAGT NGGTGTGGCAGCTCACATTTATTTTTATAGCTC AAGTGAATCATGACATAGTTTCATCTTATTCTTTTTTTATTTTCAAATTTCACTACTATGACTG ]
[+] EMBL AU082919 [ CTCGACGCAGCGACGCAACGAGAGGGGGCGCTGCGGCGGGGACGGCTGCACGGCGCGGCGCGACTCCGACGCGACGGCGACGGCACGCTCTCTCCTCCGGCAGTTGACTCCTCCGGTGGTCACCTTCTC CCCTGCTTTGGGAGGAAGTCTGAGAGGATGGTGGTTCAGATACAGAGTGAATGAGCAGACATGTACAAGATGATGGCTTTTGCAGGAGCAACAAATGTTGATCTCTGAACCATTGTATATTGCTGATGTAACCATTTGGTCTAGGAGT GGGTGTGGCAGCTCACATTTATTTTTATAGCTC AAGTGAATCATGACATAGTTTCATCTTTTTCTTTTTTTATTTTCAAATTTCACTACTATGACTGTATTTAGTTGTCTCTGTATTGTCAAGTGACCTCAAGCTTTGTTGGGTGATGCCTCCTTGCCTTAAACCGGATACAGGCCTTGATGATACTGCAATAATTTTGTTTTAATGATTAATCAATGTGGTTTTCGCGTAAAAAA]
[+] EMBL AK059379 [ CTTCTCTACAGGCTTTGGGAGGAAGTCTGAGAGGATGGTGGTTCAGATACAGAGTGAATGAGCAGACATGTACAAGATGATGGCTTTTGCAGGAGCAACAAATGTTGATCTCTGAACCATTGTATATTGCTGATGTAACCATTTGGTCTAGGAGT GGGTGTGGCAGCTCACATTTATTTTTATAGCTC AAGTGAATCATGACATAGTTTCATCTTTTTCTTTTTTTATTTTCAAATTTCACTACTATGACTGTATTTAGTTGTCTCTGTATTGTCAAGTGACCTCAAGCTTTGTTGGGTGATGCCTCCTTGCCTTAAACCGGATACAGGCCTTGATGATACTGCAATAATTTTGT ]
consensusID : consensus_14362#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 460 fasta sequence
[CGCGGCAGCCGCGGTGCAGAAGCAGAAGACGCTTCTCCAGAAGGCTGACGCCGACGTCTCCAGCCTCGTTGACAACTTCGCCGCCCTCATCAACATCGCGCGCGTCAACGACCCGCCGGTGCGCAACACGCAGGAGGCCTTCCAGATGGACATGCGCGGCTCCCGCATGGTACATTCAGCTGATTCTCTGTTGAAACTAGTGTCAGAGCTTAAGAGAACAGCTATCTTTTCTGGGCTTGCTTCTTTAACTGAAAATGTGGATAGGCGGATTGAAATCTTTAGTCAACAAGTTGAAGGAACAGAGAGAATGCTGGAGAGGATTGGGCAGGAAGCAGCAGGAAGCCTCAAAGAGTTGGAGGCACATTACTACTCATCTGTTGTGCGAACACCACCGGATGAATGAGGTAAATTCTACCTTTCTCTGAGTGAAAGATGTTTCCTTCTAATTGCTGGAGGTGCG]
[+] EMBL AU075677 [CGCGGCAGCCGCGGTGCAGAAGCAGAAGACGCTTCTCCAGAAGGCTGACGCCGACGTCTCCAGCCTCGTTGACAACTTCGCCGCCCTCATCAACATCGCGCGCGTCAACGACCCGCCGGTGCGCAACACGCAGGAGGCCTTCCAGATGGACATGCGCGGCTCCCGCATGGTACATTCAGCTGATTCTCTGTTGAAACTAGTGTCAGAGCTTAAGAGAACAGCTATCTTTTCTGGGCTTGCTTCTTTAACTGAAAATGTGGATAGGCGGATTGAAATCTTTAGTCAACAAGTTGAAGGAACAGAGAGAATGCTGGAGAGGATTGGGCAGGAAGCAGCAGGAAGCCTCAAAGAGTTGGAGGCACATTACTACTCATCTGTTGTGCGAACACCACCGGATGAATGAGGTAAATTCTACCTTTCTCTGAGTGAAAGATGTTTCCTTCTAATTGCTGGAGGTGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14362#2 ------------------------------------------------------------
consensus_14362#3 ------------------------------------------------------------
consensus_14362#1 ------------------------------------------------------------
consensus_14362#0 TCGCGTGAAGCGCAGCAAGGGGCCGACGGGAGATCTAGGGTTTCGCCGCAGGCTCCCCTT 60
consensus_14362#4 ------------------------------------------------------------
consensus_14362#2 ------------------------------------------------------------
consensus_14362#3 ------------------------------------------------------------
consensus_14362#1 ------------------------------------------------------------
consensus_14362#0 CGGCCGGCCGGCCGCCGCCTGTCCGGCCCCGCTCGGCGCCGCCCCTGTTGGTCCCCGCCC 120
consensus_14362#4 ------------------------------------------------------------
consensus_14362#2 ------------------------------------------------------------
consensus_14362#3 ------------------------------------------------------------
consensus_14362#1 -------------------CCTAGGTTGGTCCATTTNTAGTAGATCTTTTGTAGAACCAT 41
consensus_14362#0 GTCACTGCCCAGCGCCGCCCCACCCGACCCCGCCGCCACCCGACGCCGCCCCTGCTCGTC 180
consensus_14362#4 ------------------------------------------------------------
consensus_14362#2 ------------------------------------------------------------
consensus_14362#3 ------------------------------------------------------------
consensus_14362#1 CTAATGAAGAAATTCTGGATGTAAATCATGATTTTTGCAGCTATTGCTTGCTTAATCTGC 101
consensus_14362#0 CCGCCCGACGACGCCGCCCCTGTTCCCGTTTCTCTCCGGCCATCTTCCCACAGGCCACAC 240
consensus_14362#4 ------------------------------------------------------------
consensus_14362#2 ------------------------------------------------------------
consensus_14362#3 ------------------------------------------------------------
consensus_14362#1 AGACTACTGATTTTTGCTTCTACTATAGCTACTATTGAATTCAGTTTTTTGCTTGCTCAA 161
consensus_14362#0 TGTCTCTCCCTCTCCCTCCGCCTGCAGCTGTCGCACGCCATTTTCCTCTCCCTCCGACCG 300
consensus_14362#4 ------------------------------------------------------------
consensus_14362#2 ------------------------------------------------------------
consensus_14362#3 ------------------------------------------------------------
consensus_14362#1 TCTTATGTGTCCTAATTTCATTTTGATATCTGAAGCACTGCTAGTATTAGTCTCATATGC 221
consensus_14362#0 TCGATAGCTACCGGGGCTGCGGGGCCCCGCAGGGGCCGGAGGCGGGGCCGTTCCTAGAGG 360
consensus_14362#4 ------------------------------------------------------------
consensus_14362#2 -------------CGTCATCGCCGGGAAATATTCAGCTTCTCTGGTGGCCGAGGAAAAAA 47
consensus_14362#3 ------------------------------------------------------------
consensus_14362#1 ATGTCCATGTTTCTAGCACTGCTAGCTATTAGGCAAAGCACACAATACAGCTTACAAACA 281
consensus_14362#0 CCCCACCTGCGCCGGCGCCGCCGCAGCAGCAGCAACGATGAGCAAGAGCGGCGGCGCGGC 420
consensus_14362#4 ------------------------------------------------------------
consensus_14362#2 TCCTCTCGACGCAGCGACGCAATGAGAGGGGGC-CTGCGGCGGG--GACGGCTGCACGGC 104
consensus_14362#3 --CTCTCGACGCAGCGACGCAACGAGAGGGGGCGCTGCGGCGGG--GACGGCTGCACGGC 56
consensus_14362#1 ATCACTTGTCAAACTGA-AAACTTGGTAAAAATGTTGCCAAGGATCAATAGTTGGCTGGT 340
consensus_14362#0 GGCGGGGCCGACGGCGGCGGCCGCGGCAGCCGCGGTGCAGAAGC--AGAAGACGCTT--C 476
consensus_14362#4 ---------------------CGCGGCAGCCGCGGTGCAGAAGC--AGAAGACGCTT--C 35
* *** * * *
consensus_14362#2 GCGGCGCGACT--------------ACGACG-TGACGGCAACGGC-ACGCTCTCTC---- 144
consensus_14362#3 GCGGCGCGACT--------------CCGACG-CGACGGCGACGGC-ACGCTCTCTCCTCC 100
consensus_14362#1 TCCAGGAAATTTGAGACAATTGCTCACTGCA-CAAAAGCATTGCCTAGATTATTGCATTT 399
consensus_14362#0 TCCAGAAGGCTGACG----------CCGACGTCTCCAGCCTCGTTGACAACTTCGCC--- 523
consensus_14362#4 TCCAGAAGGCTGACG----------CCGACGTCTCCAGCCTCGTTGACAACTTCGCC--- 82
* * * * ** * * * *
consensus_14362#2 ------------CTCC-GGTGGCCACCTTCTCCCC----GGCTTTTGGAGGAAGTCTGAG 187
consensus_14362#3 GGCAGTTGACTCCTCC-GGTGGTCACCTTCTCCCC----TGCTTTGGGAGGAAGTCTGAG 155
consensus_14362#1 TACAACTGAAAACTGAAGGAAACTTCTTTCTTCTTTACAGGCTTTGGGAGGAAGTCTGAG 459
consensus_14362#0 -----------GCCCTCATCAACATCGCGCGCGTCAACGACCCGCCGGTGCGCAACACGC 572
consensus_14362#4 -----------GCCCTCATCAACATCGCGCGCGTCAACGACCCGCCGGTGCGCAACACGC 131
* * * * ** * *
consensus_14362#2 AGGATGGTGGTTCAGATACAGAGTGAATGAGCAAACATG-TACAAGATGATGGCTTTTTG 246
consensus_14362#3 AGGATGGTGGTTCAGATACAGAGTGAATGAGCAGACATG-TACAAGATGATGGCTTTT-G 213
consensus_14362#1 AGGATGGTGGTTCAGATACAGAGTGAATGAGCAGACATG-TACAAGATGATGGCTTTT-G 517
consensus_14362#0 AGGA-GGCCTTCCAGATGGACATGCGCGGCTCCCGCATGGTACATTCAGCTGATTCTCTG 631
consensus_14362#4 AGGA-GGCCTTCCAGATGGACATGCGCGGCTCCCGCATGGTACATTCAGCTGATTCTCTG 190
**** ** * ***** * * * * **** **** * ** * * *
consensus_14362#2 CAGGAGCAACAAATGTTGATCTCTGAACC-TTGTATATTGCTGATGTAACCATTTGGTCT 305
consensus_14362#3 CAGGAGCAACAAATGTTGATCTCTGAACCATTGTATATTGCTGATGTAACCATTTGGTCT 273
consensus_14362#1 CAGGAGCAACAAATGTTGATCTTTGAACCATTGTATATTGCTGATGTAACCATTTGGTCA 577
consensus_14362#0 TTGAAACTAGTGTCAGAGCTTAAGAGAACAGCTATCTTTTCTGGGCTTGCTTCTTTAACT 691
consensus_14362#4 TTGAAACTAGTGTCAGAGCTTAAGAGAACAGCTATCTTTTCTGGGCTTGCTTCTTTAACT 250
* * * * * * * * ** *** * * ** *
consensus_14362#2 GGGAGTCCTGGTGTGGCAGCTCACATTTATTTTTA-TAGCTCAAGTGAATCATGACATAG 364
consensus_14362#3 AGGAGTG--GGTGTGGCAGCTCACATTTATTTTTA-TAGCTCAAGTGAATCATGACATAG 330
consensus_14362#1 AGGAGTCCTGGTGTGGCAGCTCACATTTATTTTTA-TAGCTCAAGTGAATCATGACATAG 636
consensus_14362#0 GAAAATGTGGATAGGCGGATTGAAATCTTTAGTCAACAAGTTGAAGGAACAGAGAGAATG 751
consensus_14362#4 GAAAATGTGGATAGGCGGATTGAAATCTTTAGTCAACAAGTTGAAGGAACAGAGAGAATG 310
* * * * * * * ** * * * * * * * *** ** * *
consensus_14362#2 TTTCATCTTTTTCTTTTTTTATTGTCA---AATTTCACTACTATGACTGTATTTAGTTGT 421
consensus_14362#3 TTTCATCTTTTTCTTTTTTTATTTTCA---AATTTCACTACTATGACTGTATTTAGTTGT 387
consensus_14362#1 TTTCATCTTTTTCTTTTTTTATTGTCA---AATTTCACTACTATGACTGTATTTAGTTGT 693
consensus_14362#0 CTGGAGAGGATTGGGCAGGAAGCAGCAGGAAGCCTCAAAGAGTTGGAGGCACATTACTAC 811
consensus_14362#4 CTGGAGAGGATTGGGCAGGAAGCAGCAGGAAGCCTCAAAGAGTTGGAGGCACATTACTAC 370
* * ** * ** * *** ** * * * *
consensus_14362#2 CTCTGTATTTGTCAGTGACCTCAAGCTTTGTTGGGTGA-TGCCTCCTTGCCTTAAACCGG 480
consensus_14362#3 CTCTGTATTGTCAAGTGACCTCAAGCTTTGTTGGGTGA-TGCCTCCTTGCCTTAAACCGG 446
consensus_14362#1 CTCTGTATTGTCAAGTGACCTCAAGCTTTGTTGGGTGA-TGCCTCCTTGCCTTAAACCGG 752
consensus_14362#0 TCATCTGTTGTGCGAACACCACCGGATGAATGAGGCT--TTGGGAGGAAGTCTGAGAGGA 869
consensus_14362#4 TCATCTGTTGTGCGAACACCACCGGATGAATGAGGTAAATTCTACCTTTCTCTGAGTGAA 430
* * ** *** * * * * ** * * *
consensus_14362#2 ATACAGGCCTTGATGATACTGCAATATTTTTGTTTTAATGATTAATCA-TGTGATTTTCG 539
consensus_14362#3 ATACAGGCCTTGATGATACTGCAATAATTTTGTTTTAATGATTAATCAATGTGGTTTTCG 506
consensus_14362#1 ATACAGGCCTTGATGATACTGCAATATTTTTGTTTTAATGATTAATCAATGTGGTTTTCG 812
consensus_14362#0 TGGTGGTTCAGATACAG--AG-TGAATGAGCAGACATGTACAAGATGATGGCTTTTTGCA 926
consensus_14362#4 AGATGTTTCCTTCTAAT--TGCTGGAGGTGCG---------------------------- 460
* * * *
consensus_14362#2 CGTAAAAA---------------------------------------------------- 547
consensus_14362#3 CGTAAAAAA--------------------------------------------------- 515
consensus_14362#1 CGTA-------------------------------------------------------- 816
consensus_14362#0 GGAGCAACAAATGTTGATCTCTGAACCATTGTATATTGCTGATGTAACCATTTGGTCAAG 986
consensus_14362#4 ------------------------------------------------------------
consensus_14362#2 ------------------------------------------------------------
consensus_14362#3 ------------------------------------------------------------
consensus_14362#1 ------------------------------------------------------------
consensus_14362#0 GAGTCCTGGTGTGGCAGCTCACATTTATTTTTATAGCTCAAGTGAATCATGACATAGTTT 1046
consensus_14362#4 ------------------------------------------------------------
consensus_14362#2 ------------------------------------------------------------
consensus_14362#3 ------------------------------------------------------------
consensus_14362#1 ------------------------------------------------------------
consensus_14362#0 CATCTTTTTCTTTTTTTATTGTCAAATTTCACTACTATGACTGTATTTAGTTGTCTCTGT 1106
consensus_14362#4 ------------------------------------------------------------
consensus_14362#2 ------------------------------------------------------------
consensus_14362#3 ------------------------------------------------------------
consensus_14362#1 ------------------------------------------------------------
consensus_14362#0 ATTGTCAAGTGACCTCAAGCTTTGTTGGGTGATGCCTCCTTGCCTTAAACCGGATACAGG 1166
consensus_14362#4 ------------------------------------------------------------
consensus_14362#2 ------------------------------------------------------------
consensus_14362#3 ------------------------------------------------------------
consensus_14362#1 ------------------------------------------------------------
consensus_14362#0 CCTTGATGATACTGCAATATTTAGGTTTTAATGATTAATCAATGTGGTTTTCGCGTACCA 1226
consensus_14362#4 ------------------------------------------------------------
consensus_14362#2 -------
consensus_14362#3 -------
consensus_14362#1 -------
consensus_14362#0 TAAAGGG 1233
consensus_14362#4 -------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||