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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14363#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1926 fasta sequence
[AAAAAAAAGAAAAGAAAAAAAGAGAGGAAGAAAACGAGAAAAATCTCACCTTCCTCTTCCTCCGTTATCTAGCTCGATCCCCGCAAGAAATTCGCCCCGGAATCTCTCGATCCGCTCGATCCATTCCCCCGATCTGTCGATCGTTCCTTGCGAACCCTCGGTTCCCGGGGTCCCGATCCGGTCTTCGCCGCGTCGCCGTCGCCGCCGGAGTCGGAGTCGGAGTCGGAGGGGGAGGAGATGAACGGCGCCGGCGGGAACCACCAGCAGCAGCAGC-AGCAGCAGCAGCGGCTCAGGCAGCAGCAGCAGCAGCAGGCCCTCCTGATGCAGCAGGCGCTGCAGCAGCAGCAGCAG-TACCAGTCC-GGCGTCCTCGCCG-CCG-CCGCCGCGGCGGCCATGACCCAGATGGAGCCTATTTCAAATGGCAATCTTCCACCAGGGTTTGATCCATCCACATGTCGCAGTGTGTATGTTGGGAATGTGCACCCTAATGTTACTGAGAGCCTTCTAATCGAAGTTTTCCAGAGTTCTGGCCTTGTGGAAAGATGCAAGCTCATCCGGAAGGAGAAGTCTTCCTTTGGTTTTGTTGACTATTATGATCGGAGGTCAGCGGCTCTTGCAATAATGACCCTTCATGGTCGTCACATATGTGGCCAAGCAATCAAGGTGAACTGGGCTTATGCAAGTACACAGAGGGAGGATACATCTGGGCATTTCCATATTTTTGTTGGTGATTTAAGTTCTGAAGTGAATGATGCAACTCTTTATGCCTGTTTCTCAGCATATCCTTCTTGTTCTGATGCTCGAGTCATGTGGGATAACAAAACCGGACGCTCCAGAGGTTATGGTTTTGTCTCCTTCCGTAATCAACAGGAAGCTGAGACTGCTATAACTGAAATGACTGGGAAATGGCTTGGAAGCAGACAAATAAGGTGTAATTGGGCAACAAAGAACAATGCAGAAGAGAAACAAGAAACTGACAACCATAATGCAGTTGTACTAACAAATGGTAGTTCTAGTAATCCAGGAATGGAGGCAAGTCAGGACACCGGAAGTAAAGAGAATCCAGAGAACAACCCTGATTGTACTACGGTGTATGTTGGCAACCTTGGACATGAGGTTAACCGAGATGAGCTTCACCGCCACTTCTATAATTTAGGTGTTGGGGCTATTGAGGAAGTTCGCGTTCAACAGGATAAAGGATTTGGGTTTGTGAGATACAGTAACCATGGCGAAGCAGCATTGGCTATTCAGATGGCCAATGGATTGGTAGTGCGTGGGAAGCCGATCAAGTGCTCATGGGGCAACAAACCTACCCCACCTGGTACATCCTCCAAGCCATTGCCACCGCCACTTCCTTCATATC-AACCC-GTACCAA-TGGCA-GGTGTGC-CAC-AAGG-TTTCTCGGCA-GCTGATATCGTAGCATATCAGAGGCAACTTACCTTAAGCCAGGTCGCAGCTGGGCAGATTGCTGGCCAGCATGGCCTTGCAGGTCAGGTATCC-GCAGGGC-TTCTTGCTGCTGGCTC-CCAGGCCCTCTACGA-CGGGTA-CC-CGA-A-CCA-GT-CA-T-CAGCGC-A-A-C-A-GCTTAT-GTAC-TACAACTA-GG-T-GCT-TAAGGAGGAGGAAGGCATTTGTAGTGTTCGGC-TTGT-TCGGCG-CAAGCCTGGCCTTCCTCTTTCGGTTCCTATTTTCTGGTTTCTGTACTATTTGAGTGAGTGCT-CCT-CTTCC-GGTTCACTGCTTGTCGCGGAATTGTGTTATTATCTTCTTATTATTGTTGTACTATTGACCATTTTCTTTTCTAATTTGGTCGAAGTAGTTCTCGC-CTTAACAGAGTAACAGATGTATTTGATGGAATGTGAATTTGCGATTGATC-AATGTAAC-TCTC-CTGATGCCCATCTGAGTATTGATTATTCA-CCTTGGGCAAAGAGGGCTAGTCTTATCATGTA----AAAAAAAAAA]
[+] EMBL C72407 [AAAAAAAAGAAAAGAAAAAAAGAGAGGAAGAAAACGAGAAAAATCTCACCTTCCTCTTCCTCCGTTATCTAGCTCGATCCCCGCAAGAAATTCGCCCCGGAATCTCTCGATCCGCTCGATCCATTCCCCCGATCTGTCGATCGTTCCTTGCGAACCCTCGGTTCCCGGGCNCCCGATCCGGTCTTCGCCGCGTCGCCGTCGCCGCCGGAGTCGGAGTCGGAGTCGGAGGGGGAGGAGATGAACGGCGCCGGCGGGAACCACCAGCAtc ]
[+] EMBL AK069912 [ AAAAAAGAGAGGAAGAAAACGAGAAAAATCTCACCTTCCTCTTCCTCCGTTATCTAGCTCGATCCCCGCAAGAAATTCGCCCCGGAATCTCTCGATCCGCTCGATCCATTCCCCCGATCTGTCGATCGTTCCTTGCGAACCCTCGGTTCCCGGGGTCCCGATCCGGTCTTCGCCGCGTCGCCGTCGCCGCCGGAGTCGGAGTCGGAGTCGGAGGGGGAGGAGATGAACGGCGCCGGCGGGAACCACCAGCAGCAGCAGC AGCAGCAGCAGCGGCTCAGGCAGCAGCAGCAGCAGCAGGCCCTCCTGATGCAGCAGGCGCTGCAGCAGCAGCAGCAG TACCAGTCC GGCGTCCTCGCCG CCG CCGCCGCGGCGGCCATGACCCAGATGGAGCCTATTTCAAATGGCAATCTTCCACCAGGGTTTGATCCATCCACATGTCGCAGTGTGTATGTTGGGAATGTGCACCCTAATGTTACTGAGAGCCTTCTAATCGAAGTTTTCCAGAGTTCTGGCCTTGTGGAAAGATGCAAGCTCATCCGGAAGGAGAAGTCTTCCTTTGGTTTTGTTGACTATTATGATCGGAGGTCAGCGGCTCTTGCAATAATGACCCTTCATGGTCGTCACATATGTGGCCAAGCAATCAAGGTGAACTGGGCTTATGCAAGTACACAGAGGGAGGATACATCTGGGCATTTCCATATTTTTGTTGGTGATTTAAGTTCTGAAGTGAATGATGCAACTCTTTATGCCTGTTTCTCAGCATATCCTTCTTGTTCTGATGCTCGAGTCATGTGGGATAACAAAACCGGACGCTCCAGAGGTTATGGTTTTGTCTCCTTCCGTAATCAACAGGAAGCTGAGACTGCTATAACTGAAATGACTGGGAAATGGCTTGGAAGCAGACAAATAAGGTGTAATTGGGCAACAAAGAACAATGCAGAAGAGAAACAAGAAACTGACAACCATAATGCAGTTGTACTAACAAATGGTAGTTCTAGTAATCCAGGAATGGAGGCAAGTCAGGACACCGGAAGTAAAGAGAATCCAGAGAACAACCCTGATTGTACTACGGTGTATGTTGGCAACCTTGGACATGAGGTTAACCGAGATGAGCTTCACCGCCACTTCTATAATTTAGGTGTTGGGGCTATTGAGGAAGTTCGCGTTCAACAGGATAAAGGATTTGGGTTTGTGAGATACAGTAACCATGGCGAAGCAGCATTGGCTATTCAGATGGCCAATGGATTGGTAGTGCGTGGGAAGCCGATCAAGTGCTCATGGGGCAACAAACCTACCCCACCTGGTACATCCTCCAAGCCATTGCCACCGCCACTTCCTTCATATC AACCC GTACCAA TGGCA GGTGTGC CAC AAGG TTTCTCGGCA GCTGATATCGTAGCATATCAGAGGCAACTTACCTTAAGCCAGGTCGCAGCTGGGCAGATTGCTGGCCAGCATGGCCTTGCAGGTCAGGTATCC GCAGGGC TTCTTGCTGCTGGCTC CCAGGCCCTCTACGA CGGGTA CC CGA A CCA GT CA T CAGCGC A A C A GCTTAT GTAC TACAACTA GG T GCT TAAGGAGGAGGAAGGCATTTGTAGTGTTCGGC TTGT TCGGCG CAAGCCTGGCCTTCCTCTTTCGGTTCCTATTTTCTGGTTTCTGTACTATTTGAGTGAGTGCT CCT CTTCC GGTTCACTGCTTGTCGCGGAATTGTGTTATTATCTTCTTATTATTGTTGTACTATTGACCATTTTCTTTTCTAATTTGGTCGAAGTAGTTCTCGC CTTAACAGAGTAACAGATGTATTTGATGGAATGTGAATTTGCGATTGATC AATGTAAC TCTC CTGATGCCCATCTGAGTA ]
[+] EMBL C73764 [ AAATCTCACCTTCCTCTTCCTCCGTTATCTAGCTCGATCCCCGCAAGAAATTCGCCCCGGAATCTCTCGATCCGCTCGATCCATTCCCCCGATCTGTCGATCGTTCCTTGCGAACCCTCGGTTCCCGGGGTCCCGATCCGGTCTTCGCCGCGTCGCCGTCGCCGCCGGAGTCGGAGTCGGAGTCGGAGGGGGAGGAGATGAACGGCGCCGGCGGGAACCACCAGCAGCAGCAGCAAGCAGCAGCAGCGGCTCAGGCAGCAGCAGCAGCAGCAGGCCCTTCTGATGCAGCAGGCGTTCAAGCAGCAGCAGCAGTTACCAGTCCGGGGGTCCTTGCCGNCCGNCGGCCG GGGGGCCcaatt ]
[+] EMBL C72397 [ AGACAAATAAGGTGTAATTGGGCAACAAAGAACAATGCAGAAGAGAAACAAGAAACTGACAACCATAATGCAGTTGTACTAACAAATGGTAGTTCTAGTAATCCAGGAATGGAGGCAAGTCAGGACACCGGAAGTAAAGAGAATCCAGAGAACAACCCTGATTGTACTACGGTGTATGTTGGCAACCTTGGACATGAGGTTAACCGAGATGAGCTTCACCGCCACTTCTATAA ]
[-] EMBL CB618706 [ CAACCTTGGACATGAGGTTAACCGAGATGAGCTTCACCGCCACTTCTATAATTTAGGTGTTGGGGCTATTGAGGAAGTTCGCGTTCAACAGGATAAAGGATTTGGGTTTGTGAGATACAGTAACCATGGCGAAGCAGCATTGGCTATTCAGATGGCCAATGGATTGGTAGTGCGTGGGAAGCCGATCAAGTGCTCATGGGGCAACAAACCTACCCCACCTGGTACATCCTCCAAGCCATTGCCACCGCCACTTCCTTCATATC AACCC GTACCAA TGGCA GGTGTGC CAC AAGG TTTCTCGGCA GCTGATATCGTAGCATATCAGAGGCAACTTACCTTAAGCCAGGTCGCAGCTGGGCAGATTGCTGGCCAGCATGGCCTTGCAGGTCAGGTATCC GCAGGGC TTCTTGCTGCTGGCTC CCAGGCCCTCTACGA CGGGTA CC CGA A CCA GT CA T CAGCGC A A C A GCTTAT GTAC TACAACTA GG T GCT TAAGGAGGAGGAAGGCATTTGTAGTGTTCGGC TTGT TCGGCG CAAGCCTGGCCTTCCTCTTTCGGTTCCTATTTTCTGGTTTCTGTACTATTTGAGTGAGTG CTTCC GGTTCACTGCTTGTCGCGGAATTGTGTTATTATCTTCTGATTATTGTTGTACTATTGACCATTTTCTTTTCTAATTTGGTCGAAGTAGTTCTCGC CTTAACAGAGTTACAGAGGTATTTGATGGAATGTGAA ]
[+] EMBL CA764848 [ GTTTGTGAGATACAGTAACCCTGGCGAAGCAGCATTGGCTCTTCAGATGGCCAATGGATTGGTAGTGCGTGGGAAGCCGATCAAGTGCCCATGGGGCAACAAACCTACCCCACCTGGTACATCCTCCAAGCCATTGCCACCGCCACTTCCTTCATATC AACCC GTACCAA TGGCA GGTGTGC CAC AGGG TTTCTCGGCA GCTGATATCGTAGCATATCAGAGGCAACTTACCTTAAGCCAGGTCGCAGCTGGGCAGATTGCTGGCCAGCATGGCCTTGCAGGTCAGGTATCC GCAGGGC TTCTTGCTGCTGGCTC CCAGGCCCTCTACGA CGGGTA CC CGA A CCA GT CA T CAGCGC A A C A GCTTAT GTAC TACAACTA GG T GCT TAAGGGGGAGGAAGGCATTTGTAGTGTTCGGC TTGT TCGGCG CAAGCCTGGCCTTCCTCTTTCGGTTCCTATTTTCTGGTTTCTGTACTATTTGAGTGAGTGCT CCT CTTCC GGCTCACTGCTTGTCGCGGAATTGTGTTATTATCTTCTTATTATTGTTGTACTATTGACCATTTTCTTTTCTAATTTGGTCGAAGTAGTTCTCGC CTTAACAGAGTAACAGATGTATTTGATGGAATGTGAATTTG ]
[+] EMBL CF195916 [ TATC AACCC GTACCAA TGGCA GGTGTGC CAC AAGG TTTCTCGGCA GCTGATATCGTAGCATATCAGAGGCAACTTACCTTAAGCCAGGTCGCAGCTGGGCAGATTGCTGGCCAGCATGGCCTTGCAGGTCAGGTATCC GCAGGGC TTCTTGCTGCTGGCTC CCAGGCCCTCTACGA CGGGTA CC CGA A CCA GT CA T CAGCGC A A C A GCTTAT GTAC TACAACTA GG T GCT TAAGGAGGAGGAAGGCATTTGTAGTGTTCGGC TTGT TCGGCG CAAGCCTGGCCTTCCTCTTTCGGTTCCTATTTTCTGGTTTCTGTACTATTTGAGTGAGTGCT CCT CTTCC GGTTCACTGCTTGTCGCGGAATTn ]
[+] EMBL BQ908515 [ tcaatgATCAAACCCGGTACCAATTGGCAGGGTGTNCACACAAAGGTTTTNTC GCA CTGATATCGTAGCATATCAGAGNCAACTTACCTTAAGCCA GTC CA CT GGCAGATTGCTGGCCAGCATGNCCTTGCAGGTCAGGTATCC GCAGGGC TTCTTGCTGCTGGCTC CCAGGCCCTTTACGA CGGGTA CC CGA A CCA GT CA T CAGCGC A A C A GCTTAT GTAC TACAACTA GG T GCT TAAGGAGGAGGAAGGCATTTGTAGTGTTCGGC TTGT TCGGCGACAAGCCTGNCCTTCCTCTTTCGGTTCCTATTTTCTGGTTTCTGTACTATTTGAGTGAGTGCT CCT CTTCC GGTTCACTGCTTGTCGCGGAATTGTGTTATTATCTTCTTATTATTGTTGTACTATTGACCATTTTCTTTTCTAATTTGGTCGAAGTAGTTCTC C CTTAACAGAGTAACAGATGTATTTGATGGAATGTGAATTTGCGATTGATC AATGTAAC TCTC CTGATGCCCATCTGAGTATTGATTATTCA CCTTGGGCAAAGAGGGCTAGTCTTATCATGTA gccaaa ]
[+] EMBL BI808173 [ AA TGGCA GGTGTGC CAC AAGT TTTCTC GCACGCTGATATCGTAGCATATCAGA GCAACTTACCTTAAGCCA GTCGCA CT GGCAGATTGCTGGCCAGCAT GCCTTGCAGGTCAGGTATCC GCAGGGC TTCTTGCTGCTGGCTC CCAGGCCCTCTACGA CGGGTA CC CGA A CCA GT CA T CAGCGC A A C A GCTTAT GTAC TACAACTA GG T GCT TAAGGAGGAGGAAGGCATTTGTAGTGTTCGGC TTGT TCGGCG CAAGCCTGGCCTTCCTCTTTCGGTTCCTATTTTCTGGTTTCTGTACTATTTGAGTGAGTGCT CCT CTTCC GGTTCACTGCTTGTCGCGGAATTGTGTTATTATCTTCTTATTATTGTTGTACTATTGACCATTTTCTTTTCTAATTTGGTCGAAGTAGTTCTCGC CTTAACAGAGTAACAGATGTATTTGATGGAATGTGAATTTGCGATTGATC AATGTAAC TCTC CTGATGCCCATCTGAGTATTGATTATTCACCCTTGGGCAAAGAGGGCTAGTCTTATCATGTA AAAAAAAAA ]
[+] EMBL AU182277 [ GTAGCATATCAGAGGCAACTTACCTTAAGCCAGGTCGCAGCTGGGCAGATTGCTGGCCAGCATGGCCTTGCAGGTCAGGTATCC GCAGGGC TTCTTGCTGCTGGCTC CCAGGCCCTCTACGA CGGGTA CC CGA A CCA GT CA T CAGCGC A A C A GCTTAT GTAC TACAACTA GG T GCT TAAGGAGGAGGAAGGCATTTGTAGTGTTCGGC TTGT TCGGCG CAAGCCTGGCCTTCCTCTTTCGGTTCCTATTTTCTGGTTTCTGTACTATTTGAGTGAGTGCT CCT CTTCC GGTTCACTGCTTGTCGCGGAATTGTGTTATTATCTTCTTATTATTGTTGTACTATTGACCATTTTCTTTTCTAATTTGGTCGAAGTAGTTCTCGC CTTAACAGAGTAACAGATGTATTTGATGGAATGTGAATTTGCGATTGATC AATGTAAaaaa ]
[+] EMBL BQ908491 [ AGGTATCC GCAGGGC TTCTTGCTGCTGGCTC CCAGGCCCTCTACGACCGGGTATCCTCGANATCCACGT CACT CAGCGC ACACC ACGCTTATCGTAC TACAACTACGGCT GCT TAAGGAGGAGGAAGGCATTTGTAGTGTTCGGC TTGT TCGGCG CAAGCCTGGCCTTCCTCTTTCGGTTCCTATTTTCTGGTTTCTGTACTATTTGAGTGAGTGCT CCT CTTCC GGTTCACTGCTTGTCGCGGAATTGTGTTATTATCTTCTTATTATTGTTGTACTATTGACCATTTTCTTTTCTAATTTGGTCGAAGTAGTTCTCGC CTTAACAGAGTAACAGATGTATTTGATGGAATGTGAATTTGCGATTGATC AATGTAAC TCTC CTGATGCCCATCTGAGTATTGATTATTCA CCTTGGGCAAAGAGGGCTAGTCTTATCATGTA AAAAA ]
[+] EMBL BI811646 [ ATCCAGCAGGGCTTTCTTGCTGCTGGCTCACCAGGCCCTCTACGA CGGGTA CC CGA A CCA GT CA T CAGCGCAA A CAA GCTTAT GTACGTACAACTA GG T GCT TAAGGAGGAGGAA GCATTTGTAGTGTTCGGCATTGT TCGGCG CAAGCCTGGCCTTCCTCTTTCGGTTCCTATTTTCTGGTTTCTGTACTATTTGAGTGAGTGCT CCT CTTCCAGGTTCACTGCTTGTCGCGGAATTGTGTTATTATCTTCTTATTATTGTTGTACTATTGACCATTTTCTTTTCTAATTTGGTCGAAGTAGTTCTCGCACTTAACAGAGTAACAGATGTATTTGATGGAATGTGAATTTGCGATTGATCAAATGTAACATCTCACTGATGCCCATCTGAGTATTGATTATTCA CCTTGGGCAAAGAGGGCTAGTCTTATCATGTAGCCCAAAAAAAAAA]
[+] EMBL AU078648 [ aA GTCCA TCCAGCGC A A C ACGCTTAT GTACTTACAACTA GG TCGCTCTAAGGAGGAGGAAGGCATTTGTAGTGTTCGGC TTGTNTCGGCG CAAGCCTGGCCTTCCTCTTTCGGTTCCTATTTTCTGGTTTCTGTACTATTTGAGTGAGTGCTNCCTNCTTCC GGTTCACTGCTTGTCGCGGAATTGTGTTATTATCTTCTTATTATTGTTGTACTATTGACCATTTTCTTTTCTAATTTGGTCGAAGTAGTTCTCGC CTTAACAGAGTAACAGATGTATTTGATGGAATGTGAATTTGCGATTGATC AATGTAAC TCTC CTGATGCCCAaaa ]
consensusID : consensus_14363#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 350 fasta sequence
[CGCAGGGTACCCCAACCAGTCAACAGCGCAACAGTCTTCNGTACTACAACTCAGGTGCTTAAGGAGGTAGGAAGGCATTTGTAGTGTTCGGCTTGTTNCGGCGCAAGCCTGGCCTTCCTCTTTCGGTTCCTATTTTCTGGTTTCTGTACTATTTGAGTGAGTGCTCCTCTTCCGGTTCACTGCTTGTCGCGGAATTGTGTTATTATCTTCTTATTATTGTTGTACTATTGACCATTTTCTTTTCTAATTTGGTCGAAGTAGTTCTCGCCTTAACAGAGTAACAGATGTATTTGATGGAATGTGAATTTGCGATTGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL C99552 [CGCAGGGTACCCCAACCAGTCAACAGCGCAACAGTCTTCNGTACTACAACTCAGGTGCTTAAGGAGGTAGGAAGGCATTTGTAGTGTTCGGCTTGTTNCGGCGCAAGCCTGGCCTTCCTCTTTCGGTTCCTATTTTCTGGTTTCTGTACTATTTGAGTGAGTGCTCCTCTTCCGGTTCACTGCTTGTCGCGGAATTGTGTTATTATCTTCTTATTATTGTTGTACTATTGACCATTTTCTTTTCTAATTTGGTCGAAGTAGTTCTCGCCTTAACAGAGTAACAGATGTATTTGATGGAATGTGAATTTGCGATTGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_14363#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 345 fasta sequence
[GCGCCNGCCCGGGCAGGTACACAGAGGGAGGATACATCTGGGCATTTCCATATTTTTGTTGGTGATTTAAGTTCTGAAGTGAATGANGCAACTCTTTATGCCTGTTTCTCAGCATATCCTTCTTGTTCTGANGCTCGAGTCATGTGGGATAACAAAACCGGACGCTCCAGAGGTTATGGTTTTGTCTCCTTCCGTAATCAACAGGAAGCTNAGACTGCTATAACTGAAATGACTGGGAAATGGCTTGGAAGCAGACAAATAAGGTGTAATTGGGCAACAAAGAACAATGCAGAAGAGAAACANGAAACTGACAACCATAATGCAGTTGTACCCCGGCCGCGACCA]
[-] EMBL BM929248 [GCGCCNGCCCGGGCAGGTACACAGAGGGAGGATACATCTGGGCATTTCCATATTTTTGTTGGTGATTTAAGTTCTGAAGTGAATGANGCAACTCTTTATGCCTGTTTCTCAGCATATCCTTCTTGTTCTGANGCTCGAGTCATGTGGGATAACAAAACCGGACGCTCCAGAGGTTATGGTTTTGTCTCCTTCCGTAATCAACAGGAAGCTNAGACTGCTATAACTGAAATGACTGGGAAATGGCTTGGAAGCAGACAAATAAGGTGTAATTGGGCAACAAAGAACAATGCAGAAGAGAAACANGAAACTGACAACCATAATGCAGTTGTACCCCGGCCGCGACCA]
consensusID : consensus_14363#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence
[ACCTTAAATTGATCATTTACTTATCTAACTTGTCAGGTTAACCGAGATGAGCTTCACCGCCACTTCTATAATTTAGGTGTTGGGGCTATTGTGGAAGTTCGCGTTCAACAGGATAAAGGATTTGGGTTTGTGAGATACAGTAACCATGGCGAAGCAGCATTGGCTATTCAGATGGCCAATGGATTGGTAGTGCGTGGGAAGCCGATCAAGGTATTGTCCAATTCAAATAAATATTATTTCGTCTGTTCTTTCAATTTTTTGCATGATTACTTATGCAATTCTCCATGAGCACT]
[-] EMBL CB001042 [ACCTTAAATTGATCATTTACTTATCTAACTTGTCAGGTTAACCGAGATGAGCTTCACCGCCACTTCTATAATTTAGGTGTTGGGGCTATTGTGGAAGTTCGCGTTCAACAGGATAAAGGATTTGGGTTTGTGAGATACAGTAACCATGGCGAAGCAGCATTGGCTATTCAGATGGCCAATGGATTGGTAGTGCGTGGGAAGCCGATCAAGGTATTGTCCAATTCAAATAAATATTATTTCGTCTGTTCTTTCAATTTTTTGCATGATTACTTATGCAATTCTCCATGAGCACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14363#2 ------------------------------------------------------------
consensus_14363#3 ------------------------------------------------------------
consensus_14363#0 AAAAAAAAGAAAAGAAAAAAAGAGAGGAAGAAAACGAGAAAAATCTCACCTTCCTCTTCC 60
consensus_14363#1 ------------------------------------------------------------
consensus_14363#2 ------------------------------------------------------------
consensus_14363#3 ------------------------------------------------------------
consensus_14363#0 TCCGTTATCTAGCTCGATCCCCGCAAGAAATTCGCCCCGGAATCTCTCGATCCGCTCGAT 120
consensus_14363#1 ------------------------------------------------------------
consensus_14363#2 ------------------------------------------------------------
consensus_14363#3 ------------------------------------------------------------
consensus_14363#0 CCATTCCCCCGATCTGTCGATCGTTCCTTGCGAACCCTCGGTTCCCGGGGTCCCGATCCG 180
consensus_14363#1 ------------------------------------------------------------
consensus_14363#2 ------------------------------------------------------------
consensus_14363#3 ------------------------------------------------------------
consensus_14363#0 GTCTTCGCCGCGTCGCCGTCGCCGCCGGAGTCGGAGTCGGAGTCGGAGGGGGAGGAGATG 240
consensus_14363#1 ------------------------------------------------------------
consensus_14363#2 ------------------------------------------------------------
consensus_14363#3 ------------------------------------------------------------
consensus_14363#0 AACGGCGCCGGCGGGAACCACCAGCAGCAGCAGCAGCAGCAGCAGCGGCTCAGGCAGCAG 300
consensus_14363#1 ------------------------------------------------------------
consensus_14363#2 ------------------------------------------------------------
consensus_14363#3 ------------------------------------------------------------
consensus_14363#0 CAGCAGCAGCAGGCCCTCCTGATGCAGCAGGCGCTGCAGCAGCAGCAGCAGTACCAGTCC 360
consensus_14363#1 ------------------------------------------------------------
consensus_14363#2 ------------------------------------------------------------
consensus_14363#3 ------------------------------------------------------------
consensus_14363#0 GGCGTCCTCGCCGCCGCCGCCGCGGCGGCCATGACCCAGATGGAGCCTATTTCAAATGGC 420
consensus_14363#1 ------------------------------------------------------------
consensus_14363#2 ------------------------------------------------------------
consensus_14363#3 ------------------------------------------------------------
consensus_14363#0 AATCTTCCACCAGGGTTTGATCCATCCACATGTCGCAGTGTGTATGTTGGGAATGTGCAC 480
consensus_14363#1 ------------------------------------------------------------
consensus_14363#2 ------------------------------------------------------------
consensus_14363#3 ------------------------------------------------------------
consensus_14363#0 CCTAATGTTACTGAGAGCCTTCTAATCGAAGTTTTCCAGAGTTCTGGCCTTGTGGAAAGA 540
consensus_14363#1 ------------------------------------------------------------
consensus_14363#2 ------------------------------------------------------------
consensus_14363#3 ------------------------------------------------------------
consensus_14363#0 TGCAAGCTCATCCGGAAGGAGAAGTCTTCCTTTGGTTTTGTTGACTATTATGATCGGAGG 600
consensus_14363#1 ------------------------------------------------------------
consensus_14363#2 ------------------------------------------------------------
consensus_14363#3 ------------------------------------------------------------
consensus_14363#0 TCAGCGGCTCTTGCAATAATGACCCTTCATGGTCGTCACATATGTGGCCAAGCAATCAAG 660
consensus_14363#1 ------------------------------------------------------------
consensus_14363#2 ---GCGCCNGCCCGGGCAGGTACACAGAGGGAGGATA---CATCTGGGCATTTCCATATT 54
consensus_14363#3 --------------------------------------------------------ACCT 4
consensus_14363#0 GTGAACTGGGCTTATGCAAGTACACAGAGGGAGGATA---CATCTGGGCATTTCCATATT 717
consensus_14363#1 -CGCAGGGTACCCCAACCAGTCAACAGCGCAACAGTCTTCNGTACTACAACTCAGGTGCT 59
*
consensus_14363#2 TTTGTTGGTGATTTAAGTTCTGAAGTGAATGANGCAACTCTTTATGCCTGTTTCTCAGCA 114
consensus_14363#3 TAAATTGATCATTTACTTATCTAACTTGTCAGGTTAACCG---AGATGAGCTTCACCGC- 60
consensus_14363#0 TTTGTTGGTGATTTAAGTTCTGAAGTGAATGATGCAACTCTTTATGCCTGTTTCTCAGCA 777
consensus_14363#1 TAAGGAGGTAGGAAGGCATTTGTAGTGTTCGGCTTGTTNCG--GCGCAAGCCTGGC--CT 115
* * * * * * * * *
consensus_14363#2 TATCCTTCTTGTTCTGANGCTCGAGTCATGTGGG-ATAACAAAACCGGACGCTCCAGAGG 173
consensus_14363#3 CACTTCTATAATTTAGGTGTTGGGGCTATTGTGG-AAGTTCGCGTTCAACAGGATAAAGG 119
consensus_14363#0 TATCCTTCTTGTTCTGATGCTCGAGTCATGTGGG-ATAACAAAACCGGACGCTCCAGAGG 836
consensus_14363#1 TCCTCTTTCGGTTCCTATTTTCTGGTTTCTGTACTATTTGAGTGAGTGCTCCTCTTCCGG 175
* ** * * * **
consensus_14363#2 TTATGGTTTTGTCTCCTTCCGTAATCAACAGGAAGCTNAGACTGCTAT--AACTGA--AA 229
consensus_14363#3 ATTTGGGTTTGTGAGATACAGTAACCATGGCGAAGCAGCATTGGCTATTCAGATGGCCAA 179
consensus_14363#0 TTATGGTTTTGTCTCCTTCCGTAATCAACAGGAAGCTGAGACTGCTAT--AACTGA--AA 892
consensus_14363#1 TTCACTGCTTGTCGCGGAATTGTGTTATTATCTTCTTATTATTGTTGTACTATTGACCAT 235
* **** * * * * ** *
consensus_14363#2 TGACTGGG-AAATGGCTTGGAAGCAGACAAATAAGGTGTAATTGGGCAACA-AAGAACAA 287
consensus_14363#3 TGGATTGG-TAGTGCGTGGGAAGCCGAT---CAAGGTATTGTCCAATTCAA-ATAAATAT 234
consensus_14363#0 TGACTGGG-AAATGGCTTGGAAGCAGACAAATAAGGTGTAATTGGGCAACA-AAGAACAA 950
consensus_14363#1 TTTCTTTTCTAATTTGGTCGAAGTAGTT---CTCGCCTTAACAGAGTAACAGATGTATTT 292
* * * * **** * * * * * *
consensus_14363#2 TGCAGAAGAGAAACANGAAACTGACAACCATAATGCAGTTGTACCC-CGGCCGCGACCA- 345
consensus_14363#3 TATTTCGTCTGTTCTTTCAATTTTTTGCATGATTACTTATGCAATT-CT-CCATGAGCAC 292
consensus_14363#0 TGCAGAAGAGAAACAAGAAACTGACAACCATAATGCAGTTGTACTAACAAATGGTAGTTC 1010
consensus_14363#1 GATGGAATGTGAATTTGCGATTGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-- 350
* * * * *
consensus_14363#2 ------------------------------------------------------------
consensus_14363#3 T----------------------------------------------------------- 293
consensus_14363#0 TAGTAATCCAGGAATGGAGGCAAGTCAGGACACCGGAAGTAAAGAGAATCCAGAGAACAA 1070
consensus_14363#1 ------------------------------------------------------------
consensus_14363#2 ------------------------------------------------------------
consensus_14363#3 ------------------------------------------------------------
consensus_14363#0 CCCTGATTGTACTACGGTGTATGTTGGCAACCTTGGACATGAGGTTAACCGAGATGAGCT 1130
consensus_14363#1 ------------------------------------------------------------
consensus_14363#2 ------------------------------------------------------------
consensus_14363#3 ------------------------------------------------------------
consensus_14363#0 TCACCGCCACTTCTATAATTTAGGTGTTGGGGCTATTGAGGAAGTTCGCGTTCAACAGGA 1190
consensus_14363#1 ------------------------------------------------------------
consensus_14363#2 ------------------------------------------------------------
consensus_14363#3 ------------------------------------------------------------
consensus_14363#0 TAAAGGATTTGGGTTTGTGAGATACAGTAACCATGGCGAAGCAGCATTGGCTATTCAGAT 1250
consensus_14363#1 ------------------------------------------------------------
consensus_14363#2 ------------------------------------------------------------
consensus_14363#3 ------------------------------------------------------------
consensus_14363#0 GGCCAATGGATTGGTAGTGCGTGGGAAGCCGATCAAGTGCTCATGGGGCAACAAACCTAC 1310
consensus_14363#1 ------------------------------------------------------------
consensus_14363#2 ------------------------------------------------------------
consensus_14363#3 ------------------------------------------------------------
consensus_14363#0 CCCACCTGGTACATCCTCCAAGCCATTGCCACCGCCACTTCCTTCATATCAACCCGTACC 1370
consensus_14363#1 ------------------------------------------------------------
consensus_14363#2 ------------------------------------------------------------
consensus_14363#3 ------------------------------------------------------------
consensus_14363#0 AATGGCAGGTGTGCCACAAGGTTTCTCGGCAGCTGATATCGTAGCATATCAGAGGCAACT 1430
consensus_14363#1 ------------------------------------------------------------
consensus_14363#2 ------------------------------------------------------------
consensus_14363#3 ------------------------------------------------------------
consensus_14363#0 TACCTTAAGCCAGGTCGCAGCTGGGCAGATTGCTGGCCAGCATGGCCTTGCAGGTCAGGT 1490
consensus_14363#1 ------------------------------------------------------------
consensus_14363#2 ------------------------------------------------------------
consensus_14363#3 ------------------------------------------------------------
consensus_14363#0 ATCCGCAGGGCTTCTTGCTGCTGGCTCCCAGGCCCTCTACGACGGGTACCCGAACCAGTC 1550
consensus_14363#1 ------------------------------------------------------------
consensus_14363#2 ------------------------------------------------------------
consensus_14363#3 ------------------------------------------------------------
consensus_14363#0 ATCAGCGCAACAGCTTATGTACTACAACTAGGTGCTTAAGGAGGAGGAAGGCATTTGTAG 1610
consensus_14363#1 ------------------------------------------------------------
consensus_14363#2 ------------------------------------------------------------
consensus_14363#3 ------------------------------------------------------------
consensus_14363#0 TGTTCGGCTTGTTCGGCGCAAGCCTGGCCTTCCTCTTTCGGTTCCTATTTTCTGGTTTCT 1670
consensus_14363#1 ------------------------------------------------------------
consensus_14363#2 ------------------------------------------------------------
consensus_14363#3 ------------------------------------------------------------
consensus_14363#0 GTACTATTTGAGTGAGTGCTCCTCTTCCGGTTCACTGCTTGTCGCGGAATTGTGTTATTA 1730
consensus_14363#1 ------------------------------------------------------------
consensus_14363#2 ------------------------------------------------------------
consensus_14363#3 ------------------------------------------------------------
consensus_14363#0 TCTTCTTATTATTGTTGTACTATTGACCATTTTCTTTTCTAATTTGGTCGAAGTAGTTCT 1790
consensus_14363#1 ------------------------------------------------------------
consensus_14363#2 ------------------------------------------------------------
consensus_14363#3 ------------------------------------------------------------
consensus_14363#0 CGCCTTAACAGAGTAACAGATGTATTTGATGGAATGTGAATTTGCGATTGATCAATGTAA 1850
consensus_14363#1 ------------------------------------------------------------
consensus_14363#2 ------------------------------------------------------------
consensus_14363#3 ------------------------------------------------------------
consensus_14363#0 CTCTCCTGATGCCCATCTGAGTATTGATTATTCACCTTGGGCAAAGAGGGCTAGTCTTAT 1910
consensus_14363#1 ------------------------------------------------------------
consensus_14363#2 ----------------
consensus_14363#3 ----------------
consensus_14363#0 CATGTAAAAAAAAAAA 1926
consensus_14363#1 ----------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||