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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14581#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1912 fasta sequence
[AACCCGGCGCTGCGGCTCCACACTTCTCAGCCCGCCCGCTCCTCCTCCTCCCCGGCGCTGCGGCTACACAACGCAACGGCTTCCCGGCGGCACAGCGGCGAGGAGGAGGTCCGGCAAGGAGATAGAAAGGAGAAGTGCTCAAAATGGGGGCCCTTTTGAGCTCCCCCAACAGCAAGAACCAGCCATGGGAGCATGGTGAAGCTTCAAAGGCAGATTCCTCCAAGAAGCTGCGGATGTCGGCGCCGCCTCTGTCCGGTGGCTACGACCACCCCGGGCTGATCCCGGGGCTCCCGGATGAGATCTCGCTGCAGATCCTCGCAAGGATGCCCCGGATGGGTTATCTGAATGCAAAGATGGTTTCGAGGAGCTGGAAGGCTGCGATCACTGGCGTGGAGCTGTACCGGGTGAGGAAGGAGCTGGGTGTGAGTGAGGAATGGCTGTACATGCTTACCAAGTCAGATGATGGGAAGCTAGTGTGGAATGCATTCGATCCGGTTTGTGGCCAATGGCAGAGGCTGCCACTGATGCCGGGGATCAGCCATGGAGGAGAATGCAAGAGGGGCATCCCTGGGTTGTGGTTAGGGGATTTGTTGAGCGCCGGCATCAGGGTCTCTGATGTTATTAGAGGCTGGCTTGGCCAAAGGGATTCATTGGATAGGCTTCCGTTCTGCGGTTGTGCAATTGGGACAGTCAACGGGTGCATCTATGTTTTAGGTGGATTCTCTAGAGGCTCGGCGATGAAATGTGTATGGAGGTATGATCCTTTTGTCAATGCGTGGCAGGAGGTTAGCTCGATGAGCACCGGGCGCGCATTCTGCAAGGCTAGCCTGCTGAACAACAAGCTGTATGTTGTTGGTGGTGTCAGCAAAGGCAAGAACGGGTTAGCTCCGCTCCAATCCGCCGAGGTGTTTGACCCAAGGACAGGAATTTGGGTGGAGGTGCCTGACATCCCGTTCTCGAAAGCGCAAGCTCTACCAACTGCCTTCTTGGCTGAGCTGCTGAAGCCCATTGCGACAGGAATGACCTCATTTGGAGGCAAGCTTTATGTTCCTCAAAGTCTGTATTCCTGGCCATTCTTTGTTGATGTTGGT-GGGGAGATCTTTGATCCGGAGACAAATTCATGGGCGGAAATGCCTGTAGGAATGGGCGAGGGCTGGCCAGCGAGGCAGGCTGGTACGAAGTTAAGTGCTGTCATAGATGGGGACTTGTATGCTTTGGAGCCATCAACTTCTTCTGATAGAGGTAAGATCAAGATTTATGATCCTCAGGAGGATGCTTGGAAGGTTGCCATTGGCCAGGTACCAGTGGGTGACTTTGCAGAGTCGGAATGTCCATACTTACTTGCAGGATTTCTTGGCAAGCTCA-ATTTGATCATCA-AAGATGTAGATAGCA-AGATCAATATAATGCA-AA-CCGATGTTCTGAAG-CCTGTGGAG-TTGTCAGCCCC-TGGAAATGGT-CCAACATGCCAAAATCAACAACTTTCTTCAGAACAGGAAACTAATTTGTGGAAAGTCATCGTGTCGAAAAATCTTGCAGCCGCTGAATTAGTCAGTTGTCAGGTGCTCAACATATAACTTGTTATGTGTTT-ACTTTTGTTGAGTAGATGTGCTTCTACCAACATCTGATCAAGTCA-ACGGTAGAG-GCTATC-ACCTTAAGTGAAAATGATCATTATCTGTGTATGGTTTGG--ATGTGAGTAATGAGCTGCAGAAATCAATTCA-AACGGCAATGTACATATTTATATGTAATCTGTGTGTAATTCAACTCTGT-AATACATCACATAAGATAGAGAAAA-CCATGCT-GGTTTCTTCAGTTCTCAAGACAACAGTGCTATCTCCATCAGCACTGCCAAATATATTAACCTTTTTCATTGTCATTCCNTTGGTAAGCTCAGCATTTTNTTTCCCCAAAAAAAAAA]
[+] EMBL C28831 [AACCCGGCGCTGCGGCTCCACACTTCTCAGCCCGCCCGCTCCTCCTCCTCCCCGGCGCTGCGGCTACACAACGCAACGGCTTCCCGGCGGCACAGCGGCGAGGAGGAGGTCCGGCAAGGAGATAGAAAGGAGAAGTGCTCAAAATGGGGGCCCTTTTGAGCTCCCCCAACAGCAAGAACCAGCCATGGGAGCATGGTGAAGCTTCAAAGGCAGATTCCTCCAAGAAGCTGCGGATGTTGGCGCCGCCTCTGTCCGGTGGCTACGACCACCCCGGGCTGATCCCGGGGCTC ]
[+] EMBL AK111523 [ GCGGCTCCACACTTCTCAGCCCGCCCGCTCCTCCTCCTCCCCGGCGCTGCGGCTACACAACGCAACGGCTTCCCGGCGGCACAGCGGCGAGGAGGAGGTCCGGCAAGGAGATAGAAAGGAGAAGTGCTCAAAATGGGGGCCCTTTTGAGCTCCCCCAACAGCAAGAACCAGCCATGGGAGCATGGTGAAGCTTCAAAGGCAGATTCCTCCAAGAAGCTGCGGATGTCGGCGCCGCCTCTGTCCGGTGGCTACGACCACCCCGGGCTGATCCCGGGGCTCCCGGATGAGATCTCGCTGCAGATCCTCGCAAGGATGCCCCGGATGGGTTATCTGAATGCAAAGATGGTTTCGAGGAGCTGGAAGGCTGCGATCACTGGCGTGGAGCTGTACCGGGTGAGGAAGGAGCTGGGTGTGAGTGAGGAATGGCTGTACATGCTTACCAAGTCAGATGATGGGAAGCTAGTGTGGAATGCATTCGATCCGGTTTGTGGCCAATGGCAGAGGCTGCCACTGATGCCGGGGATCAGCCATGGAGGAGAATGCAAGAGGGGCATCCCTGGGTTGTGGTTAGGGGATTTGTTGAGCGCCGGCATCAGGGTCTCTGATGTTATTAGAGGCTGGCTTGGCCAAAGGGATTCATTGGATAGGCTTCCGTTCTGCGGTTGTGCAATTGGGACAGTCAACGGGTGCATCTATGTTTTAGGTGGATTCTCTAGAGGCTCGGCGATGAAATGTGTATGGAGGTATGATCCTTTTGTCAATGCGTGGCAGGAGGTTAGCTCGATGAGCACCGGGCGCGCATTCTGCAAGGCTAGCCTGCTGAACAACAAGCTGTATGTTGTTGGTGGTGTCAGCAAAGGCAAGAACGGGTTAGCTCCGCTCCAATCCGCCGAGGTGTTTGACCCAAGGACAGGAATTTGGGTGGAGGTGCCTGACATCCCGTTCTCGAAAGCGCAAGCTCTACCAACTGCCTTCTTGGCTGAGCTGCTGAAGCCCATTGCGACAGGAATGACCTCATTTGGAGGCAAGCTTTATGTTCCTCAAAGTCTGTATTCCTGGCCATTCTTTGTTGATGTTGGT GGGGAGATCTTTGATCCGGAGACAAATTCATGGGCGGAAATGCCTGTAGGAATGGGCGAGGGCTGGCCAGCGAGGCAGGCTGGTACGAAGTTAAGTGCTGTCATAGATGGGGACTTGTATGCTTTGGAGCCATCAACTTCTTCTGATAGAGGTAAGATCAAGATTTATGATCCTCAGGAGGATGCTTGGAAGGTTGCCATTGGCCAGGTACCAGTGGGTGACTTTGCAGAGTCGGAATGTCCATACTTACTTGCAGGATTTCTTGGCAAGCTCA ATTTGATCATCA AAGATGTAGATAGCA AGATCAATATAATGCA AA CCGATGTTCTGAAG CCTGTGGAG TTGTCAGCCCC TGGAAATGGT CCAACATGCCAAAATCAACAACTTTCTTCAGAACAGGAAACTAATTTGTGGAAAGTCATCGTGTCGAAAAATCTTGCAGCCGCTGAATTAGTCAGTTGTCAGGTGCTCAACATATAACTTGTTATGTGTTT ACTTTTGTTGAGTAGATGTGCTTCTACCAACATCTGATCAAGTCA ACGGTAGAG GCTATC ACCTTAAGTGAAAATGATCATTATCTGTGTATGGTTTGG ATGTGAGTAATGAGCTGCAGAAATCAATTCA AACGGCAATGTACATATTTATATGTAATCTGTGTGTAATTCAACTCTGT AATACATCACATAAGATAGAGAAAA CCATGC ]
[+] EMBL CB642004 [ CGGCTCCACACTTCTCAGCCCGCCCGCTCCTCCTCCTCCCCGGCGCTGCGGCTACACAACGCAACGGCTTCCCGGCGGCACAGCGGCGAGGAGGAGGTCCGGCAAGGAGATAGAAAGGAGAAGTGCTCAAAATGGGGGCCCTTTTGAGCTCCCCCAACAGCAAGAACCAGCCATGGGAGCATGGTGAAGCTTCAAAGGCAGATTCCTCCAAGAAGCTGCGGATGTCGGCGCCGCCTCTGTCCGGTGGCTACGACCACCCCGGGCTGATCCCGGGGCTCCCGGATGAGATCTCGCTGCAGATCCTCGCAAGGATGCCCCGGATGGGTTATCTGAATGCAAAGATGGTTTCGAGGAGCTGGAAGGCTGCGATCACTGGCGTGGAGCTGTACCGGGTGAGGAAGGAGCTGGGTGTGAGTGAGGAATGGCTGTACATGCTTACCAAGTCAGATGATGGGAAGCTAGTGTGGAATGCATTCGATCCGGTTTGTGGCCAATGGCAGAGGCTGCCACTGATGCCGGGGATCAGCCATGGAGGAGAATGCAAGAGGGGCATCCCTGGGTTGTGGTTAGGGGATTTGTTGAGCGCCGGCATCAGGGTCTCTGATGTTATTAGAGGCTGGCTTGGCCAAAGGGATTCATTGGATAGGCTTCCGTTCTGCGGTTGTGCAATTGGGACAGTCAACGGGTGCATCTATGTTTTAGGTGGATTCTCTAGAGGCTCGGCGATGAAATGTGTATGGAGGTATGATCCTTTTGTCAATGCGTGGCAGGAGGTTAGCTCGATGAGCACCGGGCG ]
[+] EMBL CB657260 [ CAGCCCGCCCGCTCCTCCTCCTCCCCGGCGCTGCGGCTACACAACGCAACGGCTTCCCGGCGGCACAGCGGCGAGGAGGAGGTCCGGCAAGGAGATAGAAAGGAGAAGTGCTCAAAATGGGGGCCCTTTTGAGCTCCCCCAACAGCAAGAACCAGCCATGGGAGCATGGTGAAGCTTCAAAGGCAGATTCCTCCAAGAAGCTGCGGATGTCGGCGCCGCCTCTGTCCGGTGGCTACGACCACCCCGGGCTGATCCCGGGGCTCCCGGATGAGATCTCGCTGCAGATCCTCGCAAGGATGCCCCGGATGGGTTATCTGAATGCAAAGATGGTTTCGAGGAGCTGGAAGGCTGCGATCACTGGCGTGGAGCTGTACCGGGTGAGGAAGGAGCTGGGTGTGAGTGAGGAATGGCTGTACATGCTTACCAAGTCAGATGATGGGAAGCTAGTGTGGAATGCATTCGATCCGGTTTGTGGCCAATGGCAGAGGCTGCCACTGATGCCGGGGATCAGCCATGGAGGAGAATGCAAGAGGGGCATCCCTGGGTTGTGGTTAGGGGATTTGTTGAGCGCCGGCATCAGGGTCTCTGATGTTATTAGAGGCTGGCTTGGCCAAAGGGATTCATTGGATAGGCTTCCGTTCTGCGGTTGTGCAATTGGGACAGTCAACGGGTGCATCTATGTTTTAGGTGGATTCTCTAGAGGCTCGGCGATGAAATGTGTATGGAGGTATGATCCTTTTGTCAATGCGTGGCAGGAGGTTAGCTCGATGAGCACCGGGCG ]
[+] EMBL CB618112 [ CCGCCCCCTCCTCCTCCTCCCCGGCGCTGCGGCTCCACAACGCAACGGCTTCCCGGCGGCACAGAGGCGAGGAGGAGGTCCGGCAAGGAGATAGAAAGGAGAAGTGCTCAAAATGGGGGCCCTTTTGAGCTCCCCCAACAGCAAGAACCAGCCATGGGAGCATGGTGAAGCTTCAAAGGCAGATTCCTCCAAGAAGCTGCGGATGTCGGCGCCGCCTCTGTCCGGTGGCTACGACCACCCCGGGCTGATCCCGGGGCTCCCGGATGAGATCTCGCTGCAGATCCTCGCAAGGATGCCCCGGATGGGTTATCTGAATGCAAAGATGGTTTCGAGGAGCTGGAAGGCTGCGATCACTGGCGTGGAGCTGTACCGGGTGAGGAAGGAGCTGGGTGTGAGTGAGGAATGGCTGTACATGCTTACCAAGTCAGATGATGGGAAGCTAGTGTGGAATGCATTCGATCCGGTTTGTGGCCAATGGCAGAGGCTGCCACTGATGCCGGGGATCAGCCATGGAGGAGAATGCAAGAGGGGCATCCCTGGGTTGTGGTTAGGGGATTTGTTGAGCGCCGGCATCAGGGTCTCTGATGTTATTAGAGGCTGGCTTGGCCAAAGGGATTCATTGGATAGGCTTCCGTTCTGCGGTTGTGCAATTGGGACAGTCGACGGGTGCATCTATGTTTTAGGTGGATTCTCTAGAGGCTCGGCGATGAAATGTGTATGGAGGTATGATCCTTTTATCAATGCGTGGCAGGAGGTTAGCTCGATGAGCACCGGGCGCGC ]
[+] EMBL CF323828 [ GCAAGGCTAGCCTGCTGAACAACAAGCTGTATGTTGTTGGTGGTGTCAGCAAAGGCAAGAACGGGTTAGCTCCGCTCCAATCCGCCGAGGTGTTTGACCCAAGGACAGGAATTTGGGTGGAGGTGCCTGACATCCCGTTCTCGAAAGCGCAAGCTCTACCAACTGCCTTCTTGGCTGAGCTGCTGAAGCCCATTGCGACAGGAATGACCTCATTTGGAGGCAAGCTTTATGTTCCTCAAAGTCTGTATTCCTGGCCATTCTTTGTTGATGTTGGTGGGGGAGATCTTTGATCCGGAGACAAATTCATGGGCGGAAATGCCTGTAGGAATGGGCGAGGGCTGGCCAGCGAGGCAGGCTGGTACGAAGTTAAGTGCTGTCATAGATGGGGACTTGTATGCTTTGGAGCCATCAACTTCTTCTGATAGAGGTAAGATCAAGATTTATGATCCTCAGGAG ]
[+] EMBL AA752937 [ TGGCTGAGCTGCTGAAGCCCATTGCGACAGGAATGACCTCATTTGGAGGCAAGCTTTATGTTCCTCAAAGTCTGTATTCCTGGCCATTCTTTGTTGACGTTGGT GGGGAGATCTTTGATCCGGAGACAAATTCATGGGCGGAAATGCCTGTAGGAATGGGCGAGGGCTGGCCAGCGAGGCAGGCTGGTACGAAGTTAAGTGCTGTCATAGATGGGGACTTGTATGCTTTGGAGCCATCAACTTCTTCTGATAGAGGTAAGATCAAGATTTATGATCCTCAGGAGGATGCTTGGAAGGTTGCCATTGGCCAGGTACCAGTGGGTGACTTTGCAGAGTCGGAATGTCCATACTTACTTGCAGGATTTCTTGGCNAGCTCA ATTTGATCATCN AAGATGTTNATNGCC AGATCNATNTTATGCC AA CCGATGTTCTGAAA CCTG ]
[-] EMBL CB618113 [ ATTGCGACAGGAATGACNTCATTTGGAGGCAAGCTTTATGTTCCTCAAAGTCTGTATTCCTGGCCATTCTTTGTTGACGTTGGT GGGGAGATCTTTGATCCGGAGACAAATTCATGGGCGGAAATGCCTGTAGGAATGGGCGAGGGCTGGCCAGCGAGGCAGGCTGGTACGAAGTTAAGTGCTGTCATAGATGGGGACTTGTATGCTTTGGAGCCATCAACTTCTTCTGATAGAGGTAAGATCAAGATTTATGATCCTCAGGAGGATGCTTGGAAGGTTGCCATTGGCCAGGTACCAGTGGGTGACTTTGCAGAGTCGGAATGTCCATACTTACTTGCAGGATTTCTTGGCAAGCTCA ATTTGATCATCA AAGATGTAGATAGCA AGATCAATATAATGCA AA CCGATGTTCTGAAG CCTGTGGAG TTGTCAGCCCC TGGAAATGGT CCAACATGCCAAAATCAACAACTTTCTTCAGAACAGGAAACTAATTTGTGGAAAGTCATCGTGTCGAAAAATCTTGCAGCCGCTGAATTAGTCAGTTGTCAGGTGCTCAACATATAACTTGTTATGTGTTT ACTTTTGTTGAGTAGATGTGCTTCTACCAACATCTGATCAAGTCA ACGGTAGAG GCTATC ACCTTAAGTGAAAATGATCATTATCTGTGTATGGTTTGGATATGTGAGTAATGAGCTGCAGAAATCAATTCA AACGGCAATGTACATATTTATATGTAATCTGTGTGTAATTCAACTCTGT AATACATCACATAAGATAGAGAAAA CCATGCT ]
[-] EMBL CB634246 [ CAAGCTTTATGTTCCTCAAAGTCTGTATTCCTGGCCATTCTTTGTTGACGTTGGT GGGGAGATCTTTGATCCGGAGACAAATTCATGGGCGGAAATGCCTGTAGGAATGGGCGAGGGCTGGCCAGCGAGGCAGGCTGGTACGAAGTTAAGTGCTGTCATAGATGGGGACTTGTATGCTTTGGAGCCATCAACTTCTTCTGATAGAGGTAAGATCAAGATTTATGATCCTCAGGAGGATGCTTGGAAGGTTGCCATTGGCCAGGTACCAGTGGGTGACTTTGCAGAGTCGGAATGTCCATACTTACTTGCAGGATTTCTTGGCAAGCTCA ATTTGATCATCA AAGATGTAGATAGCA AGATCAATATAATGCA AA CCGATGTTCTGAAG CCTGTGGAG TTGTCAGCCCC TGGAAATGGT CCAACATGCCAAAATCAACAACTTTCTTCAGAACAGGAAACTAATTTGTGGAAAGTCATCGTGTCGAAAAATCTTGCAGCCGCTGAATTAGTCAGTTGTCAGGTGCTCAACATATAACTTGTTATGTGTTT ACTTTTGTTGAGTAGATGTGCTTCTACCAACATCTGATCAAGTCA ACGGTAGAG GCTATC ACCTTAAGTGAAAATGATCATTATCTGTGTATGGTTTGGATATGTGAGTAATGAGCTGCAGAAATCAATTCA AACGGCAATGTACATATTTATATGTAATCTGTGTGTAATTCAACTCTGT AATACATCACATAAGATAGAGAAAA CCATGCT GGTTTCTTCAGTTCT ]
[-] EMBL CB657261 [ GCTTTATGTTCCTCAAAGTCTGTATTCCTGGCCATTCTTTGTTGATGTTGGT GGGGAGATCTTTGATCCGGAGACAAATTCATGGGCGGAAATGCCTGTAGGAATGGGCGAGGGCTGGCCAGCGAGGCAGGCTGGTACGAAGTTAAGTGCTGTCATAGATGGGGACTTGTATGCTTTGGAGCCATCAACTTCTTCTGATAGAGGTAAGATCAAGATTTATGATCCTCAGGAGGATGCTTGGAAGGTTGCCATTGGCCAGGTACCAGTGGGTGACTTTGCAGAGTCGGAATGTCCATACTTACTTGCAGGATTTCTTGGCAAGCTCA ATTTGATCATCA AAGATGTAGATAGCA AGATCAATATAATGCA AA CCGATGTTCTGAAG CCTGTGGAG TTGTCAGCCCC TGGAAATGGT CCAACATGCCAAAATCAACAACTTTCTTCAGAACAGGAAACTAATTTGTGGAAAGTCATCGTGTCGAAAAATCTTGCAGCCGCTGAATTAGTCAGTTGTCAGGTGCTCAACATATAACTTGTTATGTGTTT ACTTTTGTTGAGTAGATGTGCTTCTACCAACATCTGATCAAGTCA ACGGTAGAG GCTATC ACCTTAAGTGAAAATGATCATTATCTGTGTATGGTTTGG ATGTGAGTAATGAGCTGCAGAAATCAATTCA AACGGCAATGTACATATTTATATGTAATCTGTGTGTAATTCAACTCTGT AATACATCACATAAGATAGAGAAAACCCATGCT GGTTTCT ]
[-] EMBL CB642005 [ ACAAATTCATGGGCGGAAATGCCTGTAGGAATGGGCGAGGGCTGGCCAGCGAGGCAGGCTGGTACGAAGTTAAGTGCTGTCATAGATGGGGACTTGTATGCTTTGGAGCCATCAACTTCTTCTGATAGAGGTAAGATCAAGATTTATGATCCTCAGGAGGATGCTTGGAAGGTTGCCATTGGCCAGGTACCAGTGGGTGACTTTGCAGAGTCGGAATGTCCATACTTACTTGCAGGATTTCTTGGCAAGCTCA ATTTGATCATCA AAGATGTAGATAGCA AGATCAATATAATGCA AA CCGATGTTCTGAAG CCTGTGGAG TTGTCAGCCCC TGGAAATGGT CCAACATGCCAAAATCAACAACTTTCTTCAGAACAGGAAACTAATTTGTGGAAAGTCATCGTGTCGAAAAATCTTGCAGCCGCTGAATTAGTCAGTTGTCAGGTGCTCAACATATAACTTGTTATGTGTTT ACTTTTGTGGAGTAGATGTGCTTCTACCAACATCTGATCAAGTCA ACGGTAGAG GCTATC ACCTTAAGCGAAAATGATCATTATCTGTGTATGGTTTGG ATGTGAGTAATGAGCTGCAGAAATCAATTCA AACGGCAATGTACATATTTATATGTAATCTGTGTGTAATTCAACTCTGT AATACATCACATAAGATAGAGAAAA CCATGCT GGTTTCTTCAGTTCTCAAGACAACAGTGCTATCTCCATCAGCACTGCAAGATATATTAACCTTT ]
[+] EMBL BI811796 [ ATCCTCAGGAGGATGCTTGGAAGGTT CCATTGGCCAGGTACCAGTGGGTGACTTTGCAGAGTCGGAATGTCCATACTTACTTGCAGGATTTCTTGGCAAGCTCACATTTGATCATCACAAGATGTAGATA CACAGATCCATATAATGCACAA CCGATGTTCTGAA CCTGTGGA TTGTCAGCCCC TGGAAATGGT CC ACATGCCCAAATC AC ACTTTCTTCAGAACAGGAAACTAATTTGTGGAAAGTCATCGTGTCGAAAAATCTT CAGCCGCTGAATTAGTCAGTTGTCAGGTGCTCAACATATAACTTGTTATGTGTTT ACTTTTGTTGAGTAGATGTGCTTCTACCAACATCTGATCAAGTCA ACGGTAGAG GCTATC ACCCTAAGTGAAAATGATCATTATCTGTGTATGGTTTGGATATGTGAGTAATGAGCTGCAGAAATCAATTCA AACGGCAATGTACATATTTATATGTAATCTGTGTGTAATTCAACTCTGT AATACATCACATAAGATAGAGAAAA CCATGCTCGGTTTCTTCAGTTCTCAAGAAAAa ]
[-] EMBL AU225624 [ tagGCA AGATCAATATAATGCA AACCCGATGTTCTGAAGCCCTGTGGAGTTTGTCAGCCCCGTGGAAATGGTCCCTACATGCCAAAATCAACTACTTTCTTCAGAACAGG AACTAATTTGTGGAAAGTCATCGTGTCGAAAAATCTTGCAGCCGCTGAATTAGTCAGTTGTCAGGTGCTCAACATATAACTTGTTATGTGTTT ACTTTTGTTGAGTAGATGTGCTTCTACCAACATCTGATCAAGTCA ACGGTAGAG GCTATC ACCTTAAGTGAAAATGATCATTATCTGTGTATGGTTTGG ATGTGAGTAATGAGCTGCAGAAATCAATTCA AACGGCAATGTACATATTTATATGTAATCTGTGTGTAATTCAACTCTGT AATACATCACATAAGATAGAGAAAA CCATGCT GGTTTCTTCAGTTCTCAAGACAACAGTGCTATCTCCATCAGCACTGCCAAATATATTAACCTTTTTCAgcggc ]
[+] EMBL BI806841 [ ACAGGAAACTAATTTGTGGAAAGTCATCGTGTCG AAAATCTTGCAGCCGCTGAATTAGTCAGTTGTCAGGTGCTC ACATATAACTTGTTATGTGTTTGACTTTTGTTGAGTAGATGTGCTTNTACCCACATCTGATCAAGTCACACGGTAGAG GCTATCNCCCTTAAGTG AAATGATCATTATCTGTGTATGGTTTGGATATGTGAGTAATGAGCTGCAGAAATCNATTCACAACGGCCATGTACATATTTATATGTAATCTGTGTGTAATTCAACTCTGT AATACATCACATAAGATAGAGAAAA CGATGCT GGTTTCTTCAGTTCTCNAGACCACNGTGTTATCTCCATCAGCACTGCCCAATATATGAACCTTTTTCATTGTCATTCCNTTGGTAAGCTCAGCATTTTNTTTCCCCAAAAAAAAAA]
[+] EMBL BI813662 [ AAGTCA ACGGTAGAGCGCTATC ACCTTAAGTGCAAATGATCATTATCTGTGTATGGTTTGGATATGTGAGTAATGAGCTGCAGAAATC ATTC AACGGCAATGTACATATTTATATGTAATCTGTGTGTAATTCAACTCTGTCAATACATCACATAAGATAGAG AAA CCATGCT GGTTTCTTCAGTTCTCAAGACAACAGTGTTATCTCCATCAGCACTGCCAAATATATGAACCTTTTTCATTGTCATTCCATTGGTAAaaaaaaaa ]
consensusID : consensus_14581#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 772 fasta sequence
[GCACCATCTTATCTTGCAAGGTTAGAGAAGGAAGTTGTGAGCTTTAACACCATGCTGAGATTACTGTTCTCTTTGGGAATTTGCAGATAGAAAGGAGAAGTGCTCAAAATGGGGGCCCTTTTGAGCTCCCCCAACAGCAAGAACCAGCCATGGGAGCATGGTGAAGCTTCAAAGGCAGATTCCTCCAAGAAGCTGCGGATGTCGGCGCCGCCTCTGTCCGGTGGCTACGACCACCCCGGGCTGATCCCGGGGCTCCCGGATGAGATCTCGCTGCAGATCCTCGCAAGGATGCCCCGGATGGGTTATCTGAATGCAAAGATGGTTTCGAGGAGCTGGAAGGCTGCGATCACTGGCGTGGAGCTGTACCGGGTGAGGAAGGAGCTGGGTGTGAGTGAGGAATGGCTGTACATGCTTACCAAGTCAGATGATGGGAAGCTAGTGTGGAATGCATTCGATCCGGTTTGTGGCCAATGGCAGAGGCTGCCACTGATGCCGGGGATCAGCCATGGAGGAGAATGCAAGAGGGGCATCCCTGGGTTGTGGTTAGGGGATTTGTTGAGCGCCGGCATCAGGGTCTCTGATGTTATTAGAGGCTGGCTTGGCCAAAGGGATTCATTGGATAGGCTTCCGTTCTGCGGTTGTGCAATTGGGACAGTCGACGGGTGCATCTATGTTTTAGGTGGATTCTCTAGAGGCTCGGCGATGAAATGTGTATGGAGGTATGATCCTTTTATCAATGCGTGGCAGGAGGTTAGCTCGATGAGCACCGGGC]
[+] EMBL CB634245 [GCACCATCTTATCTTGCAAGGTTAGAGAAGGAAGTTGTGAGCTTTAACACCATGCTGAGATTACTGTTCTCTTTGGGAATTTGCAGATAGAAAGGAGAAGTGCTCAAAATGGGGGCCCTTTTGAGCTCCCCCAACAGCAAGAACCAGCCATGGGAGCATGGTGAAGCTTCAAAGGCAGATTCCTCCAAGAAGCTGCGGATGTCGGCGCCGCCTCTGTCCGGTGGCTACGACCACCCCGGGCTGATCCCGGGGCTCCCGGATGAGATCTCGCTGCAGATCCTCGCAAGGATGCCCCGGATGGGTTATCTGAATGCAAAGATGGTTTCGAGGAGCTGGAAGGCTGCGATCACTGGCGTGGAGCTGTACCGGGTGAGGAAGGAGCTGGGTGTGAGTGAGGAATGGCTGTACATGCTTACCAAGTCAGATGATGGGAAGCTAGTGTGGAATGCATTCGATCCGGTTTGTGGCCAATGGCAGAGGCTGCCACTGATGCCGGGGATCAGCCATGGAGGAGAATGCAAGAGGGGCATCCCTGGGTTGTGGTTAGGGGATTTGTTGAGCGCCGGCATCAGGGTCTCTGATGTTATTAGAGGCTGGCTTGGCCAAAGGGATTCATTGGATAGGCTTCCGTTCTGCGGTTGTGCAATTGGGACAGTCGACGGGTGCATCTATGTTTTAGGTGGATTCTCTAGAGGCTCGGCGATGAAATGTGTATGGAGGTATGATCCTTTTATCAATGCGTGGCAGGAGGTTAGCTCGATGAGCACCGGGC]
consensusID : consensus_14581#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence
[TGATCCGGAGACAAATTCATGGGCGGAAATGCCTGTAGGAATGGGCGAGGGCTGGCCAGCGAGGCAGGCTGGTACGAAGTTAAGTGCTGTCATAGATGGGGACTTGTATGCTTTGGAGCCATCAACTTCTTCTGATAGAGGTAAGATCAAGATTTATGATCCTCAGGAGGATGCTTGGAAGGTTGCCATTGGCCAGGTACCAGTGGGTGACTTTGCAGAGTCGGAATGTCCATACTTACTTGCAGGATTTCTTGGCAAGCTCAATTTGTGGAAAGTCATCGTGTCGAAAAATCTTGCAGCCGCTGAATTAGTCAGTTGTCAGGTGCTCAACATATAACTTGTTATGTGTTTACTTTTGTTGAGTAGATGTGCTTCTACCAACATCTGATCAAGTCAACGGTAGAGGCTATCACCTTAAGTGAAAATGATCATTATCTGTGTATGGTTTGGATGTGAGTAATGAGCTGCAGAAATCAATTCAAACGGCAATGTACATATTTATATGTAATCTGTGTGTAATTCAACTCTGTAATACATCACATAAGATAGAGAAAACCATGCTGGTTTCTTCAAAAAAAAA]
[+] EMBL AU093115 [TGATCCGGAGACAAATTCATGGGCGGAAATGCCTGTAGGAATGGGCGAGGGCTGGCCAGCGAGGCAGGCTGGTACGAAGTTAAGTGCTGTCATAGATGGGGACTTGTATGCTTTGGAGCCATCAACTTCTTCTGATAGAGGTAAGATCAAGATTTATGATCCTCAGGAGGATGCTTGGAAGGTTGCCATTGGCCAGGTACCAGTGGGTGACTTTGCAGAGTCGGAATGTCCATACTTACTTGCAGGATTTCTTGGCAAGCTCAATTTGTGGAAAGTCATCGTGTCGAAAAATCTTGCAGCCGCTGAATTAGTCAGTTGTCAGGTGCTCAACATATAACTTGTTATGTGTTTACTTTTGTTGAGTAGATGTGCTTCTACCAACATCTGATCAAGTCAACGGTAGAGGCTATCACCTTAAGTGAAAATGATCATTATCTGTGTATGGTTTGGATGTGAGTAATGAGCTGCAGAAATCAATTCAAACGGCAATGTACATATTTATATGTAATCTGTGTGTAATTCAACTCTGTAATACATCACATAAGATAGAGAAAACCATGCTGGTTTCTTCAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14581#0 AACCCGGCGCTGCGGCTCCACACTTCTCAGCCCGCCCGCTCCTCCTCCTCCCCGGCGCTG 60
consensus_14581#2 ------------------------------------------------------------
consensus_14581#1 ------------------------------------------------------------
consensus_14581#0 CGGCTACACAACGCAACGGCTTCCCGGCGGCACAGCGGCGAGGAGGAGGTCCGGCAAGGA 120
consensus_14581#2 ------------------------------------------------------------
consensus_14581#1 ------------------------------------------------------------
consensus_14581#0 GATAGAAAGGAGAAGTGCTCAAAATGGGGGCCCTTTTGAGCTCCCCCAACAGCAAGAACC 180
consensus_14581#2 ------------------------------------------------------------
consensus_14581#1 ------------------------------------------------------------
consensus_14581#0 AGCCATGGGAGCATGGTGAAGCTTCAAAGGCAGATTCCTCCAAGAAGCTGCGGATGTCGG 240
consensus_14581#2 ------------------------------------------------------------
consensus_14581#1 ------------------------------------------------------------
consensus_14581#0 CGCCGCCTCTGTCCGGTGGCTACGACCACCCCGGGCTGATCCCGGGGCTCCCGGATGAGA 300
consensus_14581#2 ------------------------------------------------------------
consensus_14581#1 ------------------------------------------------------------
consensus_14581#0 TCTCGCTGCAGATCCTCGCAAGGATGCCCCGGATGGGTTATCTGAATGCAAAGATGGTTT 360
consensus_14581#2 ------------------------------------------------------------
consensus_14581#1 ------------------------------------------------------------
consensus_14581#0 CGAGGAGCTGGAAGGCTGCGATCACTGGCGTGGAGCTGTACCGGGTGAGGAAGGAGCTGG 420
consensus_14581#2 ------------------------------------------------------------
consensus_14581#1 ------------------------------------------------------------
consensus_14581#0 GTGTGAGTGAGGAATGGCTGTACATGCTTACCAAGTCAGATGATGGGAAGCTAGTGTGGA 480
consensus_14581#2 ------------------------------------------------------------
consensus_14581#1 ------------------------------------------------------------
consensus_14581#0 ATGCATTCGATCCGGTTTGTGGCCAATGGCAGAGGCTGCCACTGATGCCGGGGATCAGCC 540
consensus_14581#2 ------------------------------------------------------------
consensus_14581#1 ------------------------------------------------------------
consensus_14581#0 ATGGAGGAGAATGCAAGAGGGGCATCCCTGGGTTGTGGTTAGGGGATTTGTTGAGCGCCG 600
consensus_14581#2 ------------------------------------------------------------
consensus_14581#1 ------------------------------------------------------------
consensus_14581#0 GCATCAGGGTCTCTGATGTTATTAGAGGCTGGCTTGGCCAAAGGGATTCATTGGATAGGC 660
consensus_14581#2 ------------------------------------------------------------
consensus_14581#1 ------------------------------------------------------------
consensus_14581#0 TTCCGTTCTGCGGTTGTGCAATTGGGACAGTCAACGGGTGCATCTATGTTTTAGGTGGAT 720
consensus_14581#2 ------------------------------------------------------------
consensus_14581#1 ------------------------------------------------------------
consensus_14581#0 TCTCTAGAGGCTCGGCGATGAAATGTGTATGGAGGTATGATCCTTTTGTCAATGCGTGGC 780
consensus_14581#2 ------------------------------------------------------------
consensus_14581#1 ------------------------------------------------------------
consensus_14581#0 AGGAGGTTAGCTCGATGAGCACCGGGCGCGCATTCTGCAAGGCTAGCCTGCTGAACAACA 840
consensus_14581#2 ------------------------------------------------------------
consensus_14581#1 ------------------------------------------------------------
consensus_14581#0 AGCTGTATGTTGTTGGTGGTGTCAGCAAAGGCAAGAACGGGTTAGCTCCGCTCCAATCCG 900
consensus_14581#2 ------------------------------------------------------------
consensus_14581#1 ------------------------------------------------------------
consensus_14581#0 CCGAGGTGTTTGACCCAAGGACAGGAATTTGGGTGGAGGTGCCTGACATCCCGTTCTCGA 960
consensus_14581#2 ------------------------------------------------------------
consensus_14581#1 ------------------------------------------------------------
consensus_14581#0 AAGCGCAAGCTCTACCAACTGCCTTCTTGGCTGAGCTGCTGAAGCCCATTGCGACAGGAA 1020
consensus_14581#2 ------------------------------------------------------------
consensus_14581#1 ------------------------------------------------------------
consensus_14581#0 TGACCTCATTTGGAGGCAAGCTTTATGTTCCTCAAAGTCTGTATTCCTGGCCATTCTTTG 1080
consensus_14581#2 ------------------------------------------------------------
consensus_14581#1 ------------------------------------------------------------
consensus_14581#0 TTGATGTTGGTGGGGAGATCTTTGATCCGGAGACAAATTCATGGGCGGAAATGCCTGTAG 1140
consensus_14581#2 ----------------------TGATCCGGAGACAAATTCATGGGCGGAAATGCCTGTAG 38
consensus_14581#1 ----GCACCATCTTATCTTGCAAGGTTAGAGAAGGAAGTTGTGAGCTTTAACACC---AT 53
* * * * ** * ** ** ** ** *
consensus_14581#0 GAATGGGCGAGGGCTGGCCAGCGAGGCAGGCTGGTACGAAGTTAAGTGCTGTCATAGATG 1200
consensus_14581#2 GAATGGGCGAGGGCTGGCCAGCGAGGCAGGCTGGTACGAAGTTAAGTGCTGTCATAGATG 98
consensus_14581#1 GCTGAGATTACTGTTCTCTTTGGGAATTTGCAGATAGAAAG--GAGAAGTGCTCAAAATG 111
* * * * * * * ** * ** *** ** ** * ***
consensus_14581#0 GGGAC--TTGTATGCTTTGGAGCCATCAACTTCTTCTGATAGAGGTAAGATCAAGATTTA 1258
consensus_14581#2 GGGAC--TTGTATGCTTTGGAGCCATCAACTTCTTCTGATAGAGGTAAGATCAAGATTTA 156
consensus_14581#1 GGGGCCCTTTTGAGCTCCCCCAACAGCAAGAACCAGCCATGGGAGCATGGTGAAGCTTCA 171
*** * ** * *** ** *** * ** * * * * * *** ** *
consensus_14581#0 TGATC----CTCAGGAGGATGCTTGGAAGGTTGCCATTGGCCAGGTACCAGTGGGT--GA 1312
consensus_14581#2 TGATC----CTCAGGAGGATGCTTGGAAGGTTGCCATTGGCCAGGTACCAGTGGGT--GA 210
consensus_14581#1 AAGGCAGATTCCTCCAAGAAGCTGCGGATGTCGGCGCCGCCTCTGT-CCGGTGGCTACGA 230
* * * ** *** * * ** * * * * ** ** **** * **
consensus_14581#0 CTTTGCAGAGTCGGAATGTCCATACTTACTTGCAGGATTTCTTGGCAAGCTCAATTTGAT 1372
consensus_14581#2 CTTTGCAGAGTCGGAATGTCCATACTTACTTGCAGGATTTCTTGGCAAGCTCAATTTG-- 268
consensus_14581#1 CCACCCCGGGCTG--ATCCCGGGGCTCCCGGATGAGATCTCGCTGCAGATCCTCGCAAGG 288
* * * * * ** * ** * *** ** *** *
consensus_14581#0 CATCAAAGATGTAGATAGCAAGATCAATATAATGCAAACCGATGTTCTGAAGCCTGTGGA 1432
consensus_14581#2 ------------------------------------------------------------
consensus_14581#1 ATGCCCCGGATGGGTTATCTGAATGCAAAGATGGTTTCGAGGAGCTGGAAGGCTGCGATC 348
consensus_14581#0 GTTGTCAGCCCCTGGAAATGGTCCAACATGCCAAAATCAACAACTTTCTTCAGAACAGGA 1492
consensus_14581#2 ------------------------------------------------------------
consensus_14581#1 ACTGGCGTGGAGCTGTACCGGGTGAGGAAGGAGCTGGGTGTGAGTGAGGAATGGCTGTAC 408
consensus_14581#0 AACTAATTTGTGGAAAGTCATCGTGTCGAAAAATCTTGCAG----CCGCTGAATTAGTCA 1548
consensus_14581#2 ----------TGGAAAGTCATCGTGTCGAAAAATCTTGCAG----CCGCTGAATTAGTCA 314
consensus_14581#1 ATG-----CTTACCAAGTCAGATGATGGGAAGCTAGTGTGGAATGCATTCGATCCGGTTT 463
* ****** * * ** * ** * * ** **
consensus_14581#0 GTTGTCAGGTGCTCAACATATAACT--TGTTATGTGTTTACTTTTGTTGAGTA-----GA 1601
consensus_14581#2 GTTGTCAGGTGCTCAACATATAACT--TGTTATGTGTTTACTTTTGTTGAGTA-----GA 367
consensus_14581#1 GTGGCCAATGGCAGAGGCTGCCACTGATGCCGGGGATCAGCCATGGAGGAGAATGCAAGA 523
** * ** ** * * *** ** * * * * * *** * **
consensus_14581#0 TGTGCTTCTACCAACATCTGATCAAGTCAACGGTAGAGGCTATCACCTTAAGTGAAAATG 1661
consensus_14581#2 TGTGCTTCTACCAACATCTGATCAAGTCAACGGTAGAGGCTATCACCTTAAGTGAAAATG 427
consensus_14581#1 GGGGCATCC-CTGGGTTGTGGTTAGGGGATTTGTTGAG--CGCCGGCATCAGGGTCTCTG 580
* ** ** * * ** * * * * ** *** * * * ** * **
consensus_14581#0 ATCATTATCTGTGTATGGTTTGGATGTGAGTAATGAGCTG-CAGAAATCAATTCAAACG- 1719
consensus_14581#2 ATCATTATCTGTGTATGGTTTGGATGTGAGTAATGAGCTG-CAGAAATCAATTCAAACG- 485
consensus_14581#1 AT-GTTATTAGAGGCTGGCTTGGCCAAAGGGATTCATTGGATAGGCTTCCGTTCTGCGGT 639
** **** * * *** **** * * * * * ** ** *** *
consensus_14581#0 ---GCAATGTACATATTT-ATATGTA-ATCTGTGTGT-AATTCAACTCTGTAATACATC- 1772
consensus_14581#2 ---GCAATGTACATATTT-ATATGTA-ATCTGTGTGT-AATTCAACTCTGTAATACATC- 538
consensus_14581#1 TGTGCAATTGGGACAGTCGACGGGTGCATCTATGTTTTAGGTGGATTCTCTAGAGGCTCG 699
***** * * * * ** **** *** * * * * *** ** **
consensus_14581#0 ---ACATAAGATAGAGAAAACCATGCTGGTTTCTTCAGTTCTCAAGACAACAGTGCTATC 1829
consensus_14581#2 ---ACATAAGATAGAGAAAACCATGCTGGTTTCTTCAA-----AAAAAAA---------- 580
consensus_14581#1 GCGATGAAATGTGTATGGAGGTATGATCCTTTTATCAATGCGTGGCAGGAGGTTAGCTCG 759
* ** * * * *** * *** *** * *
consensus_14581#0 TCCATCAGCACTGCCAAATATATTAACCTTTTTCATTGTCATTCCNTTGGTAAGCTCAGC 1889
consensus_14581#2 ------------------------------------------------------------
consensus_14581#1 ATGAGCACCGGGC----------------------------------------------- 772
consensus_14581#0 ATTTTNTTTCCCCAAAAAAAAAA 1912
consensus_14581#2 -----------------------
consensus_14581#1 -----------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||