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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14600#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1452 fasta sequence
[CCTCCTCCCTCCTACAACCCCAATCCCCCTTCTTCTTCTTCTTCTTGTACTTGTTGTTCTTGCTCTTGTTCCAGTGTTGCAGCAGCAGCAGCAGCAGCGGAGGCGCAAGAAGACGAGCTAGAGAGAGAGAATCAGAGGAGAGCTTGGGTGAGATGGGTGAGTGCAGAGGAGGAGGAGGAGGAGGAGATGGGCTGATCAAGCTGTTCGGGAAGACGATCCCGGTGCAGCCGGATGCCAAGGATGTTCAGCAGCATAGTGGCAGTAGCAGCAGCTCAACCGAATCCGACGTCCAAGAAACCGCCGCTGTCGCCGTCGCCGACCCCTCCCCGCGGTCGGAGGTCGTCGACGGCGAGAGCCCGCCGCAGCCGGGCGGCGAGGCGGCGAGCCATCAGCAGCAGCAGAAGGAGATGAAGCTGAAGAAGCCGGACAAGATCCTGCCATGCCCGCGGTGCAGCAGCATGGACACCAAGTTCTGCTACTTCAACAACTACAACGTCAACCAGCCTCGCCACTTCTGCAAGCACTGCCAGCGCTACTGGACCGCCGGCGGCGCCATGCGCAACGTCCCCGTCGGCGCCGGCGTACTGGGGCTGCATGATTCCACCTCCTGGAGCTTGGAGCCTCCCATGGCCGGCCACAGTCCAGTCTCAGGCCATCTCATCATCATCACCACCTACAAGTGCTACACCTTCAGTCTCCTCCTTCACACTAGGCAAGCATCCCAGAGAGGGTGGTGATCATGAGGCAAGAGATCACCATGGCAATGGTAAAGTGTGGGTGCCGAAGACGATCCGGATCGACAACGCCGACGAGGTTGCCCGGAGCTCAATCCGGTCACTCTTCGCCTTCAGAGGCGGCGACAAGGCGGATGATAACAACGACGACGATGGCACCGGCGTGCACAAGCTCGCCACCACGGTGTTCGAGCCAAAGAGGGACAGCAAGACGGCGAAACATCCGGCGATCACGAGCTTGCCGCTCTTGCACACCAACCCCGTCGCGCTTACCCGATCCGCGACCTTCCA-GGAGGGATCTTGAAGGCCATCTTGCA-AGATTTTTTTTTTTTTGCCTTCATCCTCTCTGCTGCTTCTGAACTG-AACA-CGAAGTTAGTAGCCTGACAGTGCTGATTTTTTTGTGAATCAGACAGAGTATTTGTATACTAGGGGTATTTGGGGGAAGTGTATGACATAGCTA-CTTGTGGAGATATA-GTTGTAACCA-TAGGTAGCA-TGTAAATACTATTTAGAAAATAG-CTGTTTAAATGGATATAGCTAGTATTTGGGTTTGGAG-CCAGGAGATAAGTAAGGCCCCTGGTTTTGTAGATAAATAAGAATCAATTAGATGGAATATATGGCTTGAGGTATTTCATTTCTTCAGCAATCTGTTGTAATATTGTTGCAAGCTTCAGTCTGAAGAATAGTTTCAGTGTGCAACTAATTGCACCATAAAAAAAAA]
[+] EMBL AK068588 [CCTCCTCCCTCCTACAACCCCAATCCCCCTTCTTCTTCTTCTTCTTGTACTTGTTGTTCTTGCTCTTGTTCCAGTGTTGCAGCAGCAGCAGCAGCAGCGGAGGCGCAAGAAGACGAGCTAGAGAGAGAGAATCAGAGGAGAGCTTGGGTGAGATGGGTGAGTGCAGAGGAGGAGGAGGAGGAGGAGATGGGCTGATCAAGCTGTTCGGGAAGACGATCCCGGTGCAGCCGGATGCCAAGGATGTTCAGCAGCATAGTGGCAGTAGCAGCAGCTCAACCGAATCCGACGTCCAAGAAACCGCCGCTGTCGCCGTCGCCGACCCCTCCCCGCGGTCGGAGGTCGTCGACGGCGAGAGCCCGCCGCAGCCGGGCGGCGAGGCGGCGAGCCATCAGCAGCAGCAGAAGGAGATGAAGCTGAAGAAGCCGGACAAGATCCTGCCATGCCCGCGGTGCAGCAGCATGGACACCAAGTTCTGCTACTTCAACAACTACAACGTCAACCAGCCTCGCCACTTCTGCAAGCACTGCCAGCGCTACTGGACCGCCGGCGGCGCCATGCGCAACGTCCCCGTCGGCGCCGGCGTACTGGGGCTGCATGATTCCACCTCCTGGAGCTTGGAGCCTCCCATGGCCGGCCACAGTCCAGTCTCAGGCCATCTCATCATCATCACCACCTACAAGTGCTACACCTTCAGTCTCCTCCTTCACACTAGGCAAGCATCCCAGAGAGGGTGGTGATCATGAGGCAAGAGATCACCATGGCAATGGTAAAGTGTGGGTGCCGAAGACGATCCGGATCGACAACGCCGACGAGGTTGCCCGGAGCTCAATCCGGTCACTCTTCGCCTTCAGAGGCGGCGACAAGGCGGATGATAACAACGACGACGATGGCACCGGCGTGCACAAGCTCGCCACCACGGTGTTCGAGCCAAAGAGGGACAGCAAGACGGCGAAACATCCGGCGATCACGAGCTTGCCGCTCTTGCACACCAACCCCGTCGCGCTTACCCGATCCGCGACCTTCCA GGAGGGATCTTGAAGGCCATCTTGCA AGATTTTTTTTTTTTTGCCTTCATCCTCTCTGCTGCTTCTGAACTG AACA CGAAGTTAGTAGCCTGACAGTGCTGATTTTTTTGTGAATCAGACAGAGTATTTGTATACTAGGGGTATTTGGGGGAAGTGTATGACATAGCTA CTTGTGGAGATATA GTTGTAACCA TAGGTAGCA TGTAAATACTATTTAGAAAATAG CTGTTTAAATGGATATAGCTAGTATTTGGGTTTGGAG CCAGGAGATAAGTAAGGCCCCTGGTTTTGTAGATAAATAAGAATCAATTAGATGGAATATATGGCTTGAGGTATT ]
[+] EMBL CB664097 [ CCTACAACCCCAATCCCCCTTCTTCTTCTTCTTCTTGTACTTGTTGTTCTTGCTCTTGTTCCAGTGTTGCAGCAGCAGCAGCAGCAGCGGAGGCGCAAGAAGACGAGCTAGAGAGAGAGAATCAGAGGAGAGCTTGGGTGAGATGGGTGAGTGCAGAGGAGGAGGAGGAGGAGGAGATGGGCTGATCAAGCTGTTCGGGAAGACGATCCCGGTGCAGCCGGATGCCAAGGATGTTCAGCAGCATAGTGGCAGTAGCAGCAGCTCAACCGAATCCGACGTCCAAGAAACCGC ]
[-] EMBL CB664098 [ TCTCCTCCTTCACACTAGGCAAGCATCCCAGAGAGGGTGGTGATCATGAGGCAAGAGATCACCATGGCAATGGTAAAGTGTGGGTGCCGAAGACGATCCGGATCGACAACGCCGACGAGGTTGCCCGGAGCTCAATCCGGTCACTCTTCGCCTTCAGAGGCGGCGACAAGGCGGATGATAACAACGACGACGATGGCACCGGCGTGCACAAGCTCGCCACCACGGTGTTCGAGCCAAAGAGGGACAGCAAGACGGCGAAACATCCGGCGATCACGAGCTTGCCGTTTTTGCACACCAACCCCGTCGCGCTTACCCGATCCGCGACCTTCCA GGAGGGATCTTGAAGGCCATCTTGCA AGATTTTTTTTTTTTTGCCTTCATCCTCTCTGCTGCTTCTGAACTG AACA CGAAGTTAGTAGCCTGACAGTGCTGATTTTTTTGTGAATCAGACAGAGTATTTGTATACTAGGGGTATTTGGGGGAAGTGTATGACATAGCTA CTTGTGGAGATATA GTTGTAACCA TAGGTAGCA TGTAAATACTATTTAGAAAATAG CTGTTTAAATGGATATAGCTAGTATTTGGGTTTGGAG CCAGGAGATAAGTAAGGCCCCTGGTTTTGTAGATAAATAAGAATCAATTAGATGGAATATATGGCTTGAGGTATTTCAT ]
[+] EMBL BM420743 [ AGAGGCGGCGACAAGGTGGACGATAACAACGACGACGATGGCACCAGCGTGCACAAGCTCGCCACCACGGTGTTCGAGCCCAAGAGGGACGGCAAGACGGCGAAACATCCGGCGATCACGAGCTTGCCGCTCTTGCACACCAACCCCGTCGCGCTTACCCGATCCGCGACCTTCCACGGAGGGATCTTGAAGGCCATCTTGCANAGA TTTTTTTTTTTTGCCTTCATCCTTTCTGCTGCTTCTGAACTG AACACCGAAGTTAGTAGCCTGACAGTACTGATTTTTTTGTGAATCAGACAGAGTATTTGTATACTAGGGGTATTTGGGGGAAGTGTATGACATAGCTACCTTGTGGAGATATACGTTGTAACCACTAGGTAGCACTGTAAATACTATTTAGAAAATAGCCTGTTTAAATGGATATAGCTAGTATTT GGTTTGGAGCCCCGGAGATAAGTAAGGCCCCTGGTTTTGTAGATAAATAAGAATC ATTAGATGGAATATATGGCTTGAGGTATTTCATTTCTTCAaaaaaaa ]
[+] EMBL CA764286 [ CAACGACGACGATGGCACCAGCGTGCACAAGCTCGCCACCACGGTGTTCGAGCCAAAGAGGGACGGCAAGACGGCGAAACATCCGGCGATCACGAGCTTGCCGCTCTTGCACACCAACCCCGTCGCGCTTACCCGATCCGCGACCTTCCA GGAGGGATCTTGAAGGCCATCTTGCA AGA TTTTTTTTTTTGCCTTCATCCTCTCTGCTGCTTCTGAACTG AACA CGAAGTTAGTAGCCTGACAGTACTGATTTTTTTGTGAATCAGACAGAGTATTTGTATACTAGGGGTATTTGGGGGAAGTGTATGACATAGCTA CTTGTGGAGATATA GTTGTAACCA TAGGTAGCA TGTAAATACTATTTAGAAAATAG CTGTTTAAATGGATATAGCTAGTATTTGGGTTTGGAG CCAGGAGATAAGTAAGGCCCCTGGTTTTGTAGATAAATAAGAATCAATTAGATGGAATATATGGCTTGAGGTATT ]
[+] EMBL AA753623 [ agnGGACAGC AGACGGGGAA AT CGGNGAT AAGAG TT NCG TTTTG AAACCAA CCCNTNG GGTTACCNNATCCG GA CTTTCA GGNGGNAT TTGAA GCCATNTTGCA AGA TTTTTTTTTTTTGCCTTCATCCTNTCTGCTGCTTCTGAACTGAAACA CGAAGTTAGTAGCCTGACAGTGCTGATTTTTTTGTGAATCAGACAGAGTATTTGTATACTAGGGGTATTTGGGGGAAGTGTATGACATAGCTA CTTGTGGAGATATA GTTGTAACCA TAGGTAGCA TGTAAATACTATTTAGAAAATAG CTGTTTAAATGGATATAGCTAGTATTTGGGTTTGGAG CCAGGAGATAAGTAAGGCCCCTGGTTTTGTAGATAAATAAGAATCAATTAGATGGAATATATGGCTTGAGGTATTTCATTTCTTCAGCAATCTGTTGTAATATTGTTGCAAGCTTCAGTCTGAAGAATAGTTTCAGTGTGCAACTAATTGCACCATAAAAAAAAA]
[+] EMBL AU172725 [ AGGGATCTTGAAGGCCATCTTGCA AGATTTTTTTTTTTTTGCCTTCATCCTCTCTGCTGCTTCTGAACTG AACA CGAAGTTAGTAGCCTGACAGTGCTGATTTTTTTGTGAATCAGACAGAGTATTTGTATACTAGGGGTATTTGGGGGAAGTGTATGACATAGCTA CTTGTGGAGATATA GTTGTAACCA TAGGTAGCA TGTAAATACTATTTAGAAAATAG CTGTTTAAATGGATATAGCTAGTATTTGGGTTTGGAG CCAGGAGATAAGTAAGGCCCCTGGTTTTGTAGATAAATAAGAATCAATTAGATGGAATATATGGCTTGAGGTATTTCATTTCTTCAGCAATCTGTTGTAATATTGTTGCAAGCTTCAGTCTGAAGAATAGTTTCAGTGTGCAACTAATTGCACCATAAAAAAAA ]
consensusID : consensus_14600#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 919 fasta sequence
[CCCCCGGCCAAATTGAAACTCTTGTCGTCCTCACCTGGAAGGAACCCCCCGAACACACGCAGCCATGGCGAAGCCTAGCGGCGGCGGCCTCCTCGACCTGGAGCACCACTTCGCCTTCTACGGCGCGTACCACAGCAACGCCGTCAACGTCTTCATCCACACGCTCTTCGTCTGGCCCATCTTCCTCACCGCGCTCCTCCTCCTCCACCTCGCCGCCCCCTCCGCGCACGCCGCGGCCGCCGGCGCCGCCGTCTACGGGGCCTTCTACCTCCTCCTCGACCGCCGCGCCGGCGCCCTCGCCGCGCTCCTCTGCTTCCTCTGCTGGGCCGCCAGCGCCGCCCTCGCCGCCCGCCTCGGCTTCT-CCGCCGGATGGAAGGTGGTATTGGTAGCTCAGCTGTTCTGTTGGACTATGCAGTTCATTGGCCATGGTGTTTTT-GAGAAGCGAGCGCCTGCCCTCCTT-GACAATCTT-GTCCAAGCTTTCTTGATGGCTCCATTCTTCGTGCTACTAGAGGCTCTTCA-CAAGTTTGTTGGGTACGAACCGTATCCTGGCTTTCACGCCAAAGTGCAGAAGCTGATTGACGAGGCCCGCAAGGAATGGGAGGACAAGAAAGCGAAGAAGATGACGTGAAGTGTGATTTGGAAGTTGGCAACCCCCATACTGCAGAGGCGTCTTAATCACGTGGCCATTTGATATTTTGATT-AGAC-GGAACTGTGTTAACATGTCGCT-GCCAACATATTGCCTTA-TTTA-TGTTGTAATATATAAAGAGTTTTATGCACTCTCTTGTCTGATGTGTATACGTTACTGGAGAATATAGAATTCTGATGATGATTGTGAACTGTATTAGAAAATAAATACAGGAAAGTCTTTTTACGGTGGTCTCTTCTGTACTGGTACTCTACTATAAGCTGGAAAAATATA]
[+] EMBL AK070066 [CCCCCGGCCAAATTGAAACTCTTGTCGTCCTCACCTGGAAGGAACCCCCCGAACACACGCAGCCATGGCGAAGCCTAGCGGCGGCGGCCTCCTCGACCTGGAGCACCACTTCGCCTTCTACGGCGCGTACCACAGCAACGCCGTCAACGTCTTCATCCACACGCTCTTCGTCTGGCCCATCTTCCTCACCGCGCTCCTCCTCCTCCACCTCGCCGCCCCCTCCGCGCACGCCGCGGCCGCCGGCGCCGCCGTCTACGGGGCCTTCTACCTCCTCCTCGACCGCCGCGCCGGCGCCCTCGCCGCGCTCCTCTGCTTCCTCTGCTGGGCCGCCAGCGCCGCCCTCGCCGCCCGCCTCGGCTTCT CCGCCGGATGGAAGGTGGTATTGGTAGCTCAGCTGTTCTGTTGGACTATGCAGTTCATTGGCCATGGTGTTTTT GAGAAGCGAGCGCCTGCCCTCCTT GACAATCTT GTCCAAGCTTTCTTGATGGCTCCATTCTTCGTGCTACTAGAGGCTCTTCA CAAGTTTGTTGGGTACGAACCGTATCCTGGCTTTCACGCCAAAGTGCAGAAGCTGATTGACGAGGCCCGCAAGGAATGGGAGGACAAGAAAGCGAAGAAGATGACGTGAAGTGTGATTTGGAAGTTGGCAACCCCCATACTGCAGAGGCGTCTTAATCACGTGGCCATTTGATATTTTGATT AGAC GGAACTGTGTTAACATGTCGCT GCCAACATATTGCCTTA TTTA TGTTGTAATATATAAAGAGTTTTATGCACTCTCTTGTCTGATGTGTATACGTTACTGGAGAATATAGAATTCTGATGATGATTGTGAACTGTATTAGAAAATAAATACAGGAAAGTCTTTTTACGGTGGTCTCTTCTGTACTGGTACTCTACTATAAGCTGGAAAAATATA]
[+] EMBL CA755709 [ TCTTGTCGTCCTCACCTGGAAGGAACCCCCCGAACACACGCAGCCATGGCGAAGCCTAGCGGCGGCGGCCTCCTCGACCTGGAGCACCACTTCGCCTTCTACGGCGCGTACCACAGCAACGCCGTCAACGTCTTCATCCACACGCTCTTCGTCTGGCCCATCTTCCTCACCGCGCTCCTCCTCCTCCACCTCGCCGCCCCCTCCGCGCACGCCGCGGCCGCCGGCGCCGCCGTCTACGGGGCCTTCTACCTCCTCCTCGACCGCCGCGCCGGCGCCCTCGCCGCGCTCCTCTGCTTCCTCTGCTGGGCCGCCGGCGCCGCCCTCGCCGCCCGCCTCGGATTCTCCCCCCGGATGGAAGGTGGTATTGGTAGCTCAGCTGTTCTGTTGGACTATGCAGTTCATTGGCCATGGTGTTTTTGGAGAAGCGAGCGCCTGCCCTCCTTGGAC ATCTTGGCCCCAGCTTTCTGGATGGCTCCGTTCTTCGTGGTACTAGAGGCTCTTCACCAGGTTGGTGGGGTACGAACGGTACCCCGGTTTTCACGCCCAAG GGAGAAGCTGATTGGCGAGGCCGGCAGGGAATGGCATGACCAGAAAGGCAAAAAaaaacac ]
[-] EMBL AU160919 [ GTCTACGGGGCCTTCTACCTCCTCCTCGACCGCCGCGCCGGCGCCCTCGCCGCGCTCCTCTGCTTCCTCTGCTGGGCCGCCAGCNCCGCCCTCGCCGCCCGCCTCGGCTTCT CCGCCGGATGGAAGGTGGTATTGGTAGCTCAGCTGTTCTGTTGGACTATGCAGTTCATTGGCCATGGTGTTTTT GAGAAGCGAGCGCCTGCCCTCCTT GACAATCTT GTCCAAGCTTTCTTGATGGCTCCATTCTTCGTGCTACTAGAGGCTCTTCA CAAGTTTGTTGGGTACGAACCGTATCCTGGCTTTCACGCCAAAGTGCAGAAGCTGATTGACGAGGCCCGCAAGGAATGGGAGGACAAGAAAGCGAAGAAGATGACGTGAAGTGTGATTTGGAAGTTGGCAACCCCCATACTGCAGAGGCGTCTTAATCACGTGGCCATTTGATATTTTGATT AGAC GGAACTGTGTTAACATGTCGCT GCCAACATATTGCCTTA TTTA TGTTGTAATATATAAAGAGTTTTATGCACTCTCTTGTCTGATGTGTATACGTTACTGGAGAATATAGAATTCTGATGATGATTGTGAACTGTATTAGAAAATAAATACAGGAAA ]
[-] EMBL BI809185 [ TCTACGGGGCCTTCTACCTCCTCCTCGACCGCCGCGCTGGCGCCCTCGCCGCGCTCCTCTGCTTCCTCTGCTGGGCCGCCAGCGCCGCCCTCGCCGCCCGCCTCGGCTTCT CCGCCGGATGGAAGGTGGTATTGGTAGCTCAGCTGTTCTG TGGACTATGCAGTTCA TGGCCATGGTGTTTTT GAGAAGCGAGCGCCTGCCCTCCTT GACAATCTT GTCCAAGCTTTCTTGATGGCTCCATTCTTCGTGCTACTAGAGGCTCTTCA CAAGTTTG TGGGTACGAACCGTATCCTGGCTTTCACGCCAAAGTGCAGAAGCTGATTGACGAGGCCCGCAAGGAATGGGAGGACAAGAAAGCGAAGAAGATGACGTGAAGTGTGA TTGGAAG TGG AA CCCCATACTG AGAGGCGTCTTAATCACGTGG CATTTGATA TTTGATTAAGACGGGAACTGTGTTAACA GTCGCTGGCCAAAATATTG CTTATTTTATTGTTGTACTATATTAA ]
[+] EMBL AU057210 [ TTTT GAGAAGCGAGCGCCTGCCCTCCTT GACAATCTT GTCCAAGCTTTCTTGATGGCTCCATTCTTCGTGCTACTAGAGGCTCTTCA CAAGTTTGTTGGGTACGAACCGTATCCTGGCTTTCACGCCAAAGTGCAGAAGCTGATTGACGAGGCCCGCAAGGAATGGGAGGACAAGAAAGCGAAGAAGATGACGTGAAGTGTGATTTGGAAGTTGGCAACCCCCATACTGCAGAGGCGTCTTAATCACGTGGCCATTTGATATTTTGATT AGAC GGAACTGTGTTAACATGTCGCT GCCAACATATTGCCTTA TTTA TGTTGTAATATATAAAGAGTTTTATGCACTCTCTTGTCTGATGTGTATACGTTACTGGAGAATATAGAATTCTGATGATGATTGTGAACTGTATTAGAAAATAAATACAGGAAAGTCTTTTTAaaaa ]
[-] EMBL AU160918 [ TCCTT GACAATCTT GTCCAAGCTTTCTTGATGGCTCCATTCTTCGTGCTACTAGAGGCTCTTCA CAAGTTTGTTGGGTACGAACCGTATCCTGGCTTTCACGCCAAAGTGCAGAAGCTGATTGACGAGGCCCGCAAGGAATGGGAGGACAAGAAAGCGAAGAAGATGACGTGAAGTGTGATTTGGAAGTTGGCAACCCCCATACTGCAGAGGCGTCTTAATCACGTGGCCATTTGATATTTTGATT AGAC GGAACTGTGTTAACATGTCGCT GCCAACATATTGCCTTA TTTA TGTTGTAATATATAAAGAGTTTTATGCACTCTCTTGTCTGATGTGTATACGTTACTGGAGAATATAGAATTCTGATGATGATTGTGAACTGTATTAGAAAATAAATACAGGAAA ]
[+] EMBL CB665798 [ CTTCA CAAGTTTGTTGGGTACGAACCGTATCCTGGCTTTCACGCCAAAGTGCAGAAGCTGATTGACGAGGCCCGCAAGGAATGGGAGGACAAGAAAGCGAAGAAGATGACGTGAAGTGTGATTTGGAAGTTGGCAACCCCCATACTGCAGAGGCGTCTTAATCACGTGGCCATTTGATATTTTGATT AGAC GGAACTGTGTTAACATGTCGCT GCCAACATATTGCCTTA TTTA TGTTGTAATATATAAAGAGTTTTATGCACTCTCTTGTCTGATGTGTATACGTTACTGGAGAATATAGAATTCTGATGATGATTGTGAACTGTATTAGAAAATAAATACAGGA ]
consensusID : consensus_14600#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence
[TCCGGATCGACAACGCCGACGAGGTTGCCCGGAGCTCAATCCGGTCACTCTTCGCCTTCAGAGGCGGCGACAAGGCGGATGATAACAACGACGACGATGGCACCGGCGTGCACAAGCTCGCCACCACGGTGTTCGAGCCAAAGAGGGACAGCAAGACGGCGAAACATCCGGCGATCACGAGCTTGCCGCTCTTGCACACCAACCCCGTCGCGCTTACCCGATCCGCGACCTTCCAGGAGGGATCTTGAAGGCCATCTTTGCAAGATTTTTTTTTTTTTGCCTTCATCCTCTCTGCTTGCTTCTTGAACTTGAACACGGAGTTAAGTAGGCCTTGACAATGCTNGATTTTTTTTTTGTTGAATCAAGACAAGGGGATTTTGTATTACTTAAGGGGGNTTTTTTGGGGGGAAGGTTATNGACAAAAGGTTAATTTTTTGGGGA]
[+] EMBL OSC823 [TCCGGATCGACAACGCCGACGAGGTTGCCCGGAGCTCAATCCGGTCACTCTTCGCCTTCAGAGGCGGCGACAAGGCGGATGATAACAACGACGACGATGGCACCGGCGTGCACAAGCTCGCCACCACGGTGTTCGAGCCAAAGAGGGACAGCAAGACGGCGAAACATCCGGCGATCACGAGCTTGCCGCTCTTGCACACCAACCCCGTCGCGCTTACCCGATCCGCGACCTTCCAGGAGGGATCTTGAAGGCCATCTTTGCAAGATTTTTTTTTTTTTGCCTTCATCCTCTCTGCTTGCTTCTTGAACTTGAACACGGAGTTAAGTAGGCCTTGACAATGCTNGATTTTTTTTTTGTTGAATCAAGACAAGGGGATTTTGTATTACTTAAGGGGGNTTTTTTGGGGGGAAGGTTATNGACAAAAGGTTAATTTTTTGGGGA]
consensusID : consensus_14600#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence
[GGAGGGGGCGGCGAGGTGGAGGAGGAGGAGCGCGGTGAGGAAGATGGGCCAGACGAAGAGCGTGTGGATGAAGACGTTGACGGCGTTGCTGTGGTACGCGCCGTAGAAGGCGAAGTGGTGCTCCAGGTCGAGGAGGCCGCCGCCGCTAGGCTTCGCCATGGCTGCGTGTGTTCGGGGGGAAGTGTATGACATAGCTACTTGTGGAGATATAGTTGTAACCATAGGTAGCATGTAAATACTATTTAGAAAATAGCTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU082960 [GGAGGGGGCGGCGAGGTGGAGGAGGAGGAGCGCGGTGAGGAAGATGGGCCAGACGAAGAGCGTGTGGATGAAGACGTTGACGGCGTTGCTGTGGTACGCGCCGTAGAAGGCGAAGTGGTGCTCCAGGTCGAGGAGGCCGCCGCCGCTAGGCTTCGCCATGGCTGCGTGTGTTCGGGGGGAAGTGTATGACATAGCTACTTGTGGAGATATAGTTGTAACCATAGGTAGCATGTAAATACTATTTAGAAAATAGCTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_14600#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence
[TTTTTTTTTTTAAAAAGACTTTCCTGTATTTATTTTCTAATACAGTTCACAATCATCATCAGAATTCTATATTCTCCAGTAACGTATACACATCAGACAAGAGAGTGCATAAAACTCTTTATATATTACAACATAAATAAGGCAATATGTTGGCAGCGACATGTTAACACAGTTCCGTCTAATCAAAATATCAAATGGCCACGTGATTAAGACGCCTCTGCAGTATGGGGGTTGCCAACTTCCAAATCACACTTCACGTCATCTTCTTCGNTTTCTTGTCCTCCCATTTCCTGCGGGGCCTCGTCAATCAGNTTCTTGCACTTTTGGNGTGAAAGCCAGGTTANGGTTCGT]
[-] EMBL AU033162 [TTTTTTTTTTTAAAAAGACTTTCCTGTATTTATTTTCTAATACAGTTCACAATCATCATCAGAATTCTATATTCTCCAGTAACGTATACACATCAGACAAGAGAGTGCATAAAACTCTTTATATATTACAACATAAATAAGGCAATATGTTGGCAGCGACATGTTAACACAGTTCCGTCTAATCAAAATATCAAATGGCCACGTGATTAAGACGCCTCTGCAGTATGGGGGTTGCCAACTTCCAAATCACACTTCACGTCATCTTCTTCGNTTTCTTGTCCTCCCATTTCCTGCGGGGCCTCGTCAATCAGNTTCTTGCACTTTTGGNGTGAAAGCCAGGTTANGGTTCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14600#0 CCTCCTCCCTCCTACAACCCCAATCCCCCTTCTTCTTCTTCTTCTTGTACTTGTTGTTCT 60
consensus_14600#2 ------------------------------------------------------------
consensus_14600#3 ------------------------------------------------------------
consensus_14600#1 ------------------------------------------------------------
consensus_14600#4 ------------------------------------------------------------
consensus_14600#0 TGCTCTTGTTCCAGTGTTGCAGCAGCAGCAGCAGCAGCGGAGGCGCAAGAAGACGAGCTA 120
consensus_14600#2 ------------------------------------------------------------
consensus_14600#3 ------------------------------------------------------------
consensus_14600#1 ------------------------------------------------------------
consensus_14600#4 ------------------------------------------------------------
consensus_14600#0 GAGAGAGAGAATCAGAGGAGAGCTTGGGTGAGATGGGTGAGTGCAGAGGAGGAGGAGGAG 180
consensus_14600#2 ------------------------------------------------------------
consensus_14600#3 ------------------------------------------------------------
consensus_14600#1 ------------------------------------------------------------
consensus_14600#4 ------------------------------------------------------------
consensus_14600#0 GAGGAGATGGGCTGATCAAGCTGTTCGGGAAGACGATCCCGGTGCAGCCGGATGCCAAGG 240
consensus_14600#2 ------------------------------------------------------------
consensus_14600#3 ------------------------------------------------------------
consensus_14600#1 ------------------------------------------------------------
consensus_14600#4 ------------------------------------------------------------
consensus_14600#0 ATGTTCAGCAGCATAGTGGCAGTAGCAGCAGCTCAACCGAATCCGACGTCCAAGAAACCG 300
consensus_14600#2 ------------------------------------------------------------
consensus_14600#3 ------------------------------------------------------------
consensus_14600#1 ---------------------------------------------------------CCC 3
consensus_14600#4 ------------------------------------------------------------
consensus_14600#0 CCGCTGTCGCCGTCGCCGACCCCTCCCCGCGGTCGGAGGTCGTCGACGGCGAGAGCCCGC 360
consensus_14600#2 ------------------------------------------------------------
consensus_14600#3 ------------------------------------------------------------
consensus_14600#1 CCGGCCAAATTGAAACTCTTGTCGTCCTCACCTGGAAGGAACCCCCCGAACACACGCAGC 63
consensus_14600#4 ------------------------------------------------------------
consensus_14600#0 CGCAGCCGGGCGGCGAGGCGGCGAGCCATCAGCAGCAGCAGAAGGAGATGAAGCTGAAGA 420
consensus_14600#2 ------------------------------------------------------------
consensus_14600#3 ------------------------------------------------------------
consensus_14600#1 CATGGCGAAGCCTAGCGGCGGCGGCCTCCTCGACCTGGAGCACCACTTCGCCTTCTACGG 123
consensus_14600#4 ------------------------------------------------------------
consensus_14600#0 AGCCGGACAAGATCCTGCCATGCCCGCGGTGCAGCAGCATGGACACCAAGTTCTGCTACT 480
consensus_14600#2 ------------------------------------------------------------
consensus_14600#3 ------------------------------------------------------------
consensus_14600#1 CGCGTACCACAGCAACGCCGTCAACGT-------CTTCATCCACACGCTCTTCGTCTGGC 176
consensus_14600#4 ------------------------------------------------------------
consensus_14600#0 TCAACAACTACAACGTCAACCAGCCTCGCCACTTCTGCAAGCACTGCCAGCGCTACTGGA 540
consensus_14600#2 ------------------------------------------------------------
consensus_14600#3 ------------------------------------------------------------
consensus_14600#1 CCATCTTCCTCACCGCGCTCCTCCTCCTCCACCTCGCCGCCCCCTCCGCGCACGCCGCGG 236
consensus_14600#4 ------------------------------------------------------------
consensus_14600#0 CCGCCGGCGGCGCCATGCGCAACGTCCCCGTCGGCGCCGGCGTACTGGGGCTGCATGATT 600
consensus_14600#2 ------------------------------------------------------------
consensus_14600#3 ------------------------------------------------------------
consensus_14600#1 CCGCCGGCGCCGCCGTCTACGGGGCCTTCTACCTCCTCCTCGACCGCCGCGCCGGCGCCC 296
consensus_14600#4 ------------------------------------------------------------
consensus_14600#0 CCACCTCCTGGAGCTTGGAGCCTCCCATGGCCGGCCACAGTCCAGTCTCAGGCCATCTCA 660
consensus_14600#2 ------------------------------------------------------------
consensus_14600#3 ------------------------------------------------------------
consensus_14600#1 TCGCCGCGCTCCTCTGCTTCCTCTGCTGGGCCGCCAGCGCCGCCCTCGCCGCCCGCCTCG 356
consensus_14600#4 ------------------------------------------------------------
consensus_14600#0 TCATCATCACCACCTACAAGTGCTACACCTTCAGTCTCCTCCTTCACACTAGGCAAGCAT 720
consensus_14600#2 ------------------------------------------------------------
consensus_14600#3 ------------------------------------------------------------
consensus_14600#1 GCTTCTCCGCCGGATGGAAG-GTGGTATTGGTAGCTCAGCTGTTCTGTTGGACTATGCAG 415
consensus_14600#4 ------------------------------------------------------------
consensus_14600#0 CCCAGAGAGGGTGGTGATCATGAGGCAAGAGATCACCATGGCAATGGTAAA---GTGTGG 777
consensus_14600#2 ------------------------------------------------------------
consensus_14600#3 ------------------------------------------------------------
consensus_14600#1 TTCATTGGCCATGGTGTTTTTGAGAAGCGAGCGCCTGCCCTCCTTGACAATCTTGTCCAA 475
consensus_14600#4 ------------------------------------------------------------
consensus_14600#0 GTGCCGAAGACGATCCGGATCGACAACGCCGACGAGGTTGCCCGGAGCTCAATCCGGTCA 837
consensus_14600#2 -------------TCCGGATCGACAACGCCGACGAGGTTGCCCGGAGCTCAATCCGGTCA 47
consensus_14600#3 ------------------------------------------------------------
consensus_14600#1 GCTTTCTTGATGGCTCCATTCTTCGTGCTACTAGAGGCTCTTCACAAGTTTGTTGGGTAC 535
consensus_14600#4 -------------------------------TTTTTTTTTTTAAAAAGACTTTCCTGTAT 29
consensus_14600#0 CTCTTCGCCTTCAGAGGCGGCGACAAGGCGGATGATAACAACGACGACGATGGCACCGGC 897
consensus_14600#2 CTCTTCGCCTTCAGAGGCGGCGACAAGGCGGATGATAACAACGACGACGATGGCACCGGC 107
consensus_14600#3 ------------GGAGGGGGCGGCGAGGTGGAGGAGGAGGAGCGCGGTGAGGAAGATGGG 48
consensus_14600#1 GAACCGTATCCTGGCTTTCACGCCAAAGTGCAGAAGCTGATTGACGAGGCCCGCAA-GGA 594
consensus_14600#4 TTATTTTCTAATACAGTTCACAATCATCATCAGAATTCTATATTCTCCAGTAACGTATAC 89
* * * * *
consensus_14600#0 GTGCAC-AAGCTCGCCACCACGGTGTTCGAGCCAAAGAGGGACAGCAAGACGGCGAAACA 956
consensus_14600#2 GTGCAC-AAGCTCGCCACCACGGTGTTCGAGCCAAAGAGGGACAGCAAGACGGCGAAACA 166
consensus_14600#3 CCAGACGAAGAGCGTGTGGATGAAGACGTTGACGGCGTTGCTGTGGTACGCGCCGTAGAA 108
consensus_14600#1 ATGGGAGGACAAGAAAGCGAAGAAGATGACGTGAAGTGTGATTTGGAAGTTGGCAACCCC 654
consensus_14600#4 ACATCAGACAAGAGAGTGCATAAAACTCTTTATATATTACAACATAAATAAGGCAATATG 149
* * * *
consensus_14600#0 TCCGGCGATCACGAGCTTGCCGCTCTTGCACACCAACCCCGTCGCGCTTACCCG-ATCCG 1015
consensus_14600#2 TCCGGCGATCACGAGCTTGCCGCTCTTGCACACCAACCCCGTCGCGCTTACCCG-ATCCG 225
consensus_14600#3 ---GGCGAAGTGGTGCTC-CAGGTCGAGGAGGCCGCCGCCGCTAGGCTTCGCCATGGCTG 164
consensus_14600#1 CATACTGCAGAGGCGTCT--TAATCACGTGGCCATTTGATATTTTGATTAGACGGAACTG 712
consensus_14600#4 T-TGGCAGCGACATGTTA-------ACACAGTTCCGTCTAATCAAAATATCAAATGGCCA 201
* * *
consensus_14600#0 CGACCTTCCAGGAGGGATCTTGAAGGCCATCTT-GCAAGATTTTTTTTTTTTTGCCTTCA 1074
consensus_14600#2 CGACCTTCCAGGAGGGATCTTGAAGGCCATCTTTGCAAGATTTTTTTTTTTTTGCCTTCA 285
consensus_14600#3 CGTGTGTTCGGGGGGAAG--TGTATGACAT-------AGCTACTTGTGGAGATATAGTTG 215
consensus_14600#1 TGTTAACATGTCGCTGCCAACATATTGCCT--------TATTTATGTTGTAATATATAAA 764
consensus_14600#4 CGTGATTAAGACGCCTCTGCAGTATGGGGGTTG---CCAACTTCCAAATCACACTTCACG 258
* *
consensus_14600#0 TCCTCTCTGCT-GCTTCT-GAACT-GAACACGAAGTTA--GTAG--CCTGACAGTGCTG- 1126
consensus_14600#2 TCCTCTCTGCTTGCTTCTTGAACTTGAACACGGAGTTAA-GTAGGCCTTGACAATGCTNG 344
consensus_14600#3 TAACCATAGGTAGCATGT-AAATACTATTTAGAAAATA--GCTG--TTTAAAAAAAAAAA 270
consensus_14600#1 GAGTTTTATGCACTCTCTTGTCTGATGTGTATACGTTACTGGAGAATATAGAATTCTGAT 824
consensus_14600#4 TCATCTTCTTCGNTTTCTTGTCCTCCCATTTCCTGCGGG-GCCTCGTCAATCAGNTTCTT 317
* * * *
consensus_14600#0 ATTTTTTTGTGAATCAGACAGAGTATTTGTATACTAGGGGTATTTGGGGGAAGTGTATGA 1186
consensus_14600#2 ATTTTTTTTTTGTTGAATCAAGACAAGGGGATTTT-GTATTACTTAAGGGGGNTTTTTTG 403
consensus_14600#3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANGAAAAAA 330
consensus_14600#1 GATGATTGTGAACTGTATTAGAAAATAAATACAGGAAAGTCTTTTTACGGTGGTCTCTTC 884
consensus_14600#4 GCACTTTTGGNGTGAAAGCCAGGTTANGGTTCGT-------------------------- 351
consensus_14600#0 CATAGCTACTTGTGGAGATATAGTTGTAACCATAGGTAGCATGTAAATACTATTTAGAAA 1246
consensus_14600#2 GGGGGAAGGTTATNGACAAAAGGTTAATTTTTTGGGGA---------------------- 441
consensus_14600#3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------------- 369
consensus_14600#1 TGTACTGGTACTCTACTATA-AGCTGGAAAAATATA------------------------ 919
consensus_14600#4 ------------------------------------------------------------
consensus_14600#0 ATAGCTGTTTAAATGGATATAGCTAGTATTTGGGTTTGGAGCCAGGAGATAAGTAAGGCC 1306
consensus_14600#2 ------------------------------------------------------------
consensus_14600#3 ------------------------------------------------------------
consensus_14600#1 ------------------------------------------------------------
consensus_14600#4 ------------------------------------------------------------
consensus_14600#0 CCTGGTTTTGTAGATAAATAAGAATCAATTAGATGGAATATATGGCTTGAGGTATTTCAT 1366
consensus_14600#2 ------------------------------------------------------------
consensus_14600#3 ------------------------------------------------------------
consensus_14600#1 ------------------------------------------------------------
consensus_14600#4 ------------------------------------------------------------
consensus_14600#0 TTCTTCAGCAATCTGTTGTAATATTGTTGCAAGCTTCAGTCTGAAGAATAGTTTCAGTGT 1426
consensus_14600#2 ------------------------------------------------------------
consensus_14600#3 ------------------------------------------------------------
consensus_14600#1 ------------------------------------------------------------
consensus_14600#4 ------------------------------------------------------------
consensus_14600#0 GCAACTAATTGCACCATAAAAAAAAA 1452
consensus_14600#2 --------------------------
consensus_14600#3 --------------------------
consensus_14600#1 --------------------------
consensus_14600#4 --------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||