|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14756#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 2862 fasta sequence
[GCCACCGCCGCGCGTTGACGGTTAGACGCCACCGCGGGAGGAGAGCCCCTCCCTCCCCGTCCGCGTCCGCGTCCGCCTCATCTCCGCCGCCCTCTTACTCCCCCTCCCCTTCCTCCACTCCGTCCACCTCGGAATCGTCGGCGCGACGCCTCCAAACCCCCGCATCGATTCCTCCCTCCCACCTCACCCCACCCTTCCGCCCGCTCGATCCACCGCCGAAGCGGGCGGCGATGGCGACGCCGTCGTCGTTTTCGTCGGCGAGGAAGAAGGCGCCGAGCCCGCCGAAGCACCGCCACGACGGCACCTCCGGGCTGCCGTTCGGCATGGACTGGAGCCCGCCCCCGAAGAGATGGGAGGGAAGGAACACCATATGGCCACATAACCCTCAAACCGGATGGAGTTACTGTGTGATGATTCCTTCTTGGATCGCTCAGACACCTGAAGCTAGTGCGACTGCTGACAACTTCTTGAAATCCATAGTTTTTTACAGGATACATGTTGGTATACAATCTCCAGAAGGCATCAGCTCTAGCCACGGAGTTCTTCGAAGGTTTAGTGACTTTCTAAAGTTATCTTCTGATCTTAAGCAGGAATTTCCCAGAAAAGGAATCCCCCCTGCTCCACCGAAGCATGCCTTTTCAAGAATAAATTCAAGCAGGGTGCTTCTAGAAGAGAGAAGGAACGCTTTGGAGGAGTGGATGCAAAAGCTACTTTCTGACATTGAGTTGTCGAGAAGTGCACCTGTTGCTGCTTTTCTTGAGCTGGAAGCTGCTGCACGCTCATATTACCAAGATTGGAATCAGCGCCCTTCTGAAGTGGGTTCTTCAGCAAAAAGTAGTGCAGATTCTTCTCCGCGTCCTGATGAACATGGTTCAGGTGTTCTCTCTGAGTCCAGTCAAATGAATTCAGCCTTTGCTCATGGTAACGGTCCGACAGGAGCAACTGGTAATGGTATGCTGGGAGAGTCTATCTTAGATCAGCCCAATGAGCGGGCTAGTAGCATGTCAAATCACAGGAAAAAGAACCATGTCTTTTTGGAACATGGTGTTAGGAATGGTTCCATAGATACTTATAAGGGAGTGGTTTCCGAAGAGGATCACGATTCTAACCCTGGCCATGCCAGGAAGGACTCTGCTGAAAGTATAGGAAGTGATTTGAGTTCTTTGAGGGGCAGTGAATTATCGGTTCCTGGAGTTAGTAGTTCCCTTTGGGATGGTCCTGTGGATCTTCCAAGTGGAATTGATGGACATAGCCAAACAGAACAATTTACAGGTTTAGATATGCAGCTTTTATATGATATGGATGCACAAATCATCCTTCCTGCTGATCAAAGGCC-GAAGTTGACTAGACTTTTGATCAGCATGGACAGAAGACAGGTGACAGCAAAAACTGATATGGAGGATCTCATAGCACGACTAAATCAGGAAGTGGCTGTCAAAGAATATCTTGCGACAAAGGTCAAAGATTTGGAGGTTGAGTTGGAAGCTACGAAGAAAAAAGACAAAGAGATTCTACATCAGGCTGTTTTGACCGAAAGAGAGAAAATTACCCAACTTCAATGGGATAAGGATGAGCTCTACAGGAAGTACTCTGAAATGGAGTCAAACCTGAAGATTGAACAAAATGAGAAAACTCGTGTGCAGTCAGAGAAAACAACTGCTAGCGGTGAAAAAGAAATGTTACTGGAAGAGCTAGAAACTAAACGAAAAGAAGTTGAGAGTTTGCAGCAACATATTGGAGAATTCGAGGCAAAGTCTAAAGCAGATATAAAAGTTCTTGTTAAAGAGGTGAAATCTCTTCGGAACTCCCAAAAAGAGATGAAGAAAGTGCTGAATCAGTATCATGAGGAGAAGACTGAATTAGAGAGGATTGTTAACAGGGAGAAACAGCGGTCAACACGTGCAAGGTTCTCCCGTGAAAAAATTCTTCACGAATGCAGACTGCTCCGTGAGCGTCTACAGGAATGTACTGCCAAGTTTGTTGCAGATGAGCAAGACACTATGACTATTGATTTATCATCTTTGCCTGATGCTTTAGATCTTGTGACGACATCAGACAATAGAATACGTTTGCTTGTTGCTGAGGCTCAACTTCTGTCACGAGATGATGAACAGGGCTCTTCTGATGATGGTGATAATTCTGATGGTAAATCCTCAGTTA-CCATGAG-CAGTGAAGATGCATATGTTACTGATGAAGAGACAACAAAAATGTTATCTGATCTGCTTATTGACAATGCACAACTGAGGTTG-CGCTTGAATTCTCTCATCCGTAATGCTGTAAATAC-TGCTGTGAAGAC-GGAGAAAGAAGGTAGTGATGGAACCGTGCCAAAAAAGACGGTGCTTAATTGGTTATTGGACAGATAGAAAAACCAGTATATATTCTTGTGAATTAGCTCTTCTAGTTATGC-GGCCTTCTCAAAGTTATATGATGAGTA-TTGTTATAATGTGGGAGTAACAGGAGTGGAGAAAAAAAAATCAAAATCTTCCTTACATGCAGATCAAGCATGTGGTGGTGTTGTATCTCTTATTTACAAAGATTGATCAAGGATAATATATTTAGGAGGCTTCTGAGCCTGGCCTCCTAGCGGGAGAACGGTAGGGCTCATATGGTTTTGGGGAGGCTTGCAACTGGAGTGGTAGAGAACATGGGTCCCCCTTTTTTGCACCATACTTCAATTTGTAATTGCCGAGCTGATGGATAGCTGCATGGTTGTATCTTTGTACAGATGTTTCAGATGGTGAGTTCCCAGCAGGAAAGCATTGTACACTATAGTTAAACTCTGGATTAATCTTCTTCACCCATAAAAAAAAAAACTGTTAAATCAGTACTTCTTACTCATGCAGTTGCACCTCTTCCAGACTG]
[+] EMBL AK067701 [GCCACCGCCGCGCGTTGACGGTTAGACGCCACCGCGGGAGGAGAGCCCCTCCCTCCCCGTCCGCGTCCGCGTCCGCCTCATCTCCGCCGCCCTCTTACTCCCCCTCCCCTTCCTCCACTCCGTCCACCTCGGAATCGTCGGCGCGACGCCTCCAAACCCCCGCATCGATTCCTCCCTCCCACCTCACCCCACCCTTCCGCCCGCTCGATCCACCGCCGAAGCGGGCGGCGATGGCGACGCCGTCGTCGTTTTCGTCGGCGAGGAAGAAGGCGCCGAGCCCGCCGAAGCACCGCCACGACGGCACCTCCGGGCTGCCGTTCGGCATGGACTGGAGCCCGCCCCCGAAGAGATGGGAGGGAAGGAACACCATATGGCCACATAACCCTCAAACCGGATGGAGTTACTGTGTGATGATTCCTTCTTGGATCGCTCAGACACCTGAAGCTAGTGCGACTGCTGACAACTTCTTGAAATCCATAGTTTTTTACAGGATACATGTTGGTATACAATCTCCAGAAGGCATCAGCTCTAGCCACGGAGTTCTTCGAAGGTTTAGTGACTTTCTAAAGTTATCTTCTGATCTTAAGCAGGAATTTCCCAGAAAAGGAATCCCCCCTGCTCCACCGAAGCATGCCTTTTCAAGAATAAATTCAAGCAGGGTGCTTCTAGAAGAGAGAAGGAACGCTTTGGAGGAGTGGATGCAAAAGCTACTTTCTGACATTGAGTTGTCGAGAAGTGCACCTGTTGCTGCTTTTCTTGAGCTGGAAGCTGCTGCACGCTCATATTACCAAGATTGGAATCAGCGCCCTTCTGAAGTGGGTTCTTCAGCAAAAAGTAGTGCAGATTCTTCTCCGCGTCCTGATGAACATGGTTCAGGTGTTCTCTCTGAGTCCAGTCAAATGAATTCAGCCTTTGCTCATGGTAACGGTCCGACAGGAGCAACTGGTAATGGTATGCTGGGAGAGTCTATCTTAGATCAGCCCAATGAGCGGGCTAGTAGCATGTCAAATCACAGGAAAAAGAACCATGTCTTTTTGGAACATGGTGTTAGGAATGGTTCCATAGATACTTATAAGGGAGTGGTTTCCGAAGAGGATCACGATTCTAACCCTGGCCATGCCAGGAAGGACTCTGCTGAAAGTATAGGAAGTGATTTGAGTTCTTTGAGGGGCAGTGAATTATCGGTTCCTGGAGTTAGTAGTTCCCTTTGGGATGGTCCTGTGGATCTTCCAAGTGGAATTGATGGACATAGCCAAACAGAACAATTTACAGGTTTAGATATGCAGCTTTTATATGATATGGATGCACAAATCATCCTTCCTGCTGATCAAAGGCC GAAGTTGACTAGACTTTTGATCAGCATGGACAGAAGACAGGTGACAGCAAAAACTGATATGGAGGATCTCATAGCACGACTAAATCAGGAAGTGGCTGTCAAAGAATATCTTGCGACAAAGGTCAAAGATTTGGAGGTTGAGTTGGAAGCTACGAAGAAAAAAGACAAAGAGATTCTACATCAGGCTGTTTTGACCGAAAGAGAGAAAATTACCCAACTTCAATGGGATAAGGATGAGCTCTACAGGAAGTACTCTGAAATGGAGTCAAACCTGAAGATTGAACAAAATGAGAAAACTCGTGTGCAGTCAGAGAAAACAACTGCTAGCGGTGAAAAAGAAATGTTACTGGAAGAGCTAGAAACTAAACGAAAAGAAGTTGAGAGTTTGCAGCAACATATTGGAGAATTCGAGGCAAAGTCTAAAGCAGATATAAAAGTTCTTGTTAAAGAGGTGAAATCTCTTCGGAACTCCCAAAAAGAGATGAAGAAAGTGCTGAATCAGTATCATGAGGAGAAGACTGAATTAGAGAGGATTGTTAACAGGGAGAAACAGCGGTCAACACGTGCAAGGTTCTCCCGTGAAAAAATTCTTCACGAATGCAGACTGCTCCGTGAGCGTCTACAGGAATGTACTGCCAAGTTTGTTGCAGATGAGCAAGACACTATGACTATTGATTTATCATCTTTGCCTGATGCTTTAGATCTTGTGACGACATCAGACAATAGAATACGTTTGCTTGTTGCTGAGGCTCAACTTCTGTCACGAGATGATGAACAGGGCTCTTCTGATGATGGTGATAATTCTGATGGTAAATCCTCAGTTA CCATGAG CAGTGAAGATGCATATGTTACTGATGAAGAGACAACAAAAATGTTATCTGATCTGCTTATTGACAATGCACAACTGAGGTTG CGCTTGAATTCTCTCATCCGTAATGCTGT AATAC TGCTGTGAAGAC GGAGAAAGAAGGTAGTGATGGAACCGTGCCAAAAAAGACGGTGCTTAATTGGTTATTGGACAGATAGAAAAACCAGTATATATTCTTGTGAATTAGCTCTTCTAGTTATGC GGCCTTCTCAAAGTTATATGATGAGTA TTGTTATAATGTGGGAGTAACAGGAGTGGAGAAAAAAAAATCAAAATCTTCCTTACATGCAGATCAAGCATGTGGTGGTGTTGTATCTCTTATTTACAAAGATTGATCAAGGATAATATATTTAGGAGGCTTCTGAGCCTGGCCTCCTAGCGGGAGAACGGTAGGGCTCATATGGTTTTGGGGAGGCTTGCAACTGGAGTGGTAGAGAACATGGGTCCCCCTTTTTTGCACCATACTTCAATTTGTAATTGCCGAGCTGATGGATAGCTGCATGGTTGTATCTTTGTACAGATGTTTCAGATGGTGAGTTCCCAGCAGGAAAGCATTGTACACTATAGTTAAACTCTGGATTAATCTTCTTCACCCATAGAGTGCTCAACTGTTAAATCAGTACTTCTTACTCATGCAGTTGCACCTCTTCCAGACTG]
[+] EMBL AU166705 [ GGATGGAGTTACTGTGTGATGATTCCTTCTTGGATCGCTCAGACACCTGAAGCTAGTGCGACTGCTGACAACTTCTTGAAATCCATAGTTTTTTACAGGATACATGTTGGTATACAATCTCCAGAAGGCATCAGCTCTAGCCACGGAGTTCTTCGAAGGTTTAGTGACTTTCTAAAGTTATCTTCTGATCTTAAGCAGGAATTTCCCAGAAAAGGAATCCCCCCTGCTCCACCGAAGCATGCCTTTTCAAGAATAAATTCAAGCAGGGTGCTTCTAGAAGAGAGAAGGAACGCTTTGGAGGAGTGGATGCAAAAGCTACTTTCTGACATTGAGTTGTCGAGAAGTGCACCTGTTGCTGCTTTTCTTGAGCTGGAAGCTGCTGCACGCTCATAT ]
[+] EMBL CB630309 [ TCGAAGGCTTAGTGACTTTCTAAAGTTATCTTCTGATCTTAAGCAGGAATTTCCCAGAAAAGGAATCCCCCCTGCTCCACCGAAGCATGCCTTTTCAAGAATAAATTCAAGCAGGGTGCTTCTAGAAGAGAGAAGGAACGCTTTGGAGGAGTGGATGCAAAAGCTACTTTCTGACATTGAGTTGTCGAGAAGTGCACCTGTTGCTGCTTTTCTTGAGCTGGAAGCTGCTGCACGCTCATATTACCAAGATTGGAATCAGCGCCCTTCTGAAGTGGGTTCTTCAGCAAAAAGTAGTGCAGATTCTTCTCTGCGTCCTGATGAACATGGTTCAGGTGTTCTCTCTGAGTCCAGTCTAATGAATTCAGCCTTTGCTCATGGTAACGGTCCGACAGGAGCAACTGGTAATGGTATGCTGGGAGAGTCTATCTTAGATCAGCCCAATGAGCGGGTTAGTAGCATGTCAAATCACAGGAAAAAGAACCATGTCTTTTTGGAACATGGTGTTAGGAATGGTTCCATAGATACTTATAAGGGAGTGGTTTCCGAAGAGGATCACGATTCTAACCCTGGCCATGCCAGGAAGGACTCTGCTGAAAGTATAGGAAGTGATTTGAGTTCTTTGAGGGGCAGTGAATTATCGGTTCCTGGAGTTAGTAGTTCCCTTTGGGATGGTCCTGTGGATCTTCCAAGTGGAATTGATGGACATAGCCAAACAGAACAATTTACAGGTTTAGATATGCAGCTTTTATATGATATGGATGCACAAATCATCCTTCCTGCTGATCAAAGGCCGGAAG TGACTAGACTTTTGAT ]
[+] EMBL CB641306 [ GCCTTTTCAAGAATAAATTCAAGCAGGGTGCTTCTAGAAGAGAGAAGGAACGCTTTGGAGGAGTGGATGCAAAAGCTACTTTCTGACATTGAGTTGTCGAGAAGTGCACCTGTTGCTGCTTTTCTTGAGCTGGAAGCTGCTGCACGCTCATATTACCAAGATTGGAATCAGCGCCCTTCTGAAGTGGGTTCTTCAGCAAAAAGTAGTGCAGATTCTTCTCCGCGTCCTGATGAACATGGTTCAGGTGTTCTCTCTGAGTCCAGTCAAATGAATTCAGCCTTTGCTCATGGTAACGGTCCGACAGGAGCAACTGGTAATGGTATGCTGGGAGAGTCTATCTTAGATCAGCCCAATGAGCGGGCTAGTAGCATGTCAAATCACAGGAAAAAGAACCATGTCTTTTTGGAACATGGTGTTAGGAATGGTTCCATAGATACTTATAAGGGAGTGGTTTCCGAAGAGGATCACGATTCTAACCCTGGCCATGCCAGGAAGGACTCTGCTGAAAGTATAGGAAGTGATTTGAGTTCTTTGAGGGGCAGTGAATTATCGGTTCCTGGAGTTAGTAGTTCCCTTTGGGATGGTCCTGTGGATCTTCC AGTGGAA ]
[+] EMBL CB641305 [ CCTTTCCAAGAATAAATTCAAGCAGGGTGCTTCTAGAAGAGAGAAGGAACGCTTTGGAGGAGTGGATGCAAAAGCTACTTTCTGACATTGAGTTGTCGAGAAGTGCACCTGTTGCTGCTTTTCTTGAGCTGGAAGCTGCTGCACGCTCATATTACCAAGATTGGAATCAGCGCCCTTCTGAAGTGGGTTCTTCAGCAAAAAGTAGTGCAGATTCTTCTCCGCGTCCTGATGAACATGGTTCAGGTGTTCTCTCTGAGTCCAGTCAAATGAATTCAGCCTTTGCTCATGGTAACGGTCCGACAGGAGCAACTGGTAATGGTATGCTGGGAGAGTCTATCTTAGATCAGCCCAATGAGCGGGCTAGTAGCATGTCAAATCACAGGAAAAAGAACCATGTCTTTTTGGAACATGGTGTTAGGAATGGTTCCATAGATACTTATAAGGGAGTGGTTTCCGAAGAGGATCACGATTCTAACCCTGGCCATGCCAGGAAGGACTCTGCTGAAAGTATAGGAAGTGATTTGAGTTCTTTGAGGGGCAGTGAATTATCGGTTCCT ]
[+] EMBL CF197048 [ GTGTTCTCTCTGAGTCCAGTCTAATGAATTCAGCCTTTGCTCATGGTAACGGTCCGACAGGAGCAACTGGTAATGGTATGCTGGGAGAGTCTATCTTAGATCAGCCCAATGAGCGGGTTAGTAGCATGTCAAATCACAGGAAAAAGAACCATGTCTTTTTGGAACATGGTGTTAGGAATGGTTCCATAGATACTTATAAGGGAGTGGTTTCCGAAGAGGATCACGATTCTAACCCTGGCCATGCCAGGAAGGACTCTGCTGAAAGTATAGGAAGTGATTTGAGTTCTTTGAGGGGCAGTGAATTATCGGTTCCTGGAGTTAGTAGTTCCCTTTGGGATGGTCCTGTGGATCTTCCAAGTGGAATTGATGGACATAGCCAAACAGAACAATTTACAGGTTTNNNTATGCAGCTTTTATATGATATGGATGCACAAATCATCCTTCCTGCTGATnnnnnnn ]
[-] EMBL CB680862 [ TTGCAGATGAGCAAGACACTATGACTATTGATTTATCATCTTTGCCTGATGCTTTAGATCTTGTGACGACATCAGACAATAGAATACGTTTGCTTGTTGCTGAGGCTCAACTTCTGTCACGAGATGATGAACAGGGCTCTTCTGATGATGGTGATAATTCTGATGGTAAATCCTCAGTTA CCATGAG CAGTGAAGATGCATATGTTACTGATGAAGAGACAACAAAAATGTTATCTGATCTGCTTATTGACAATGCACAACTGAGGTTG CGCTTGAATTCTCTCATCCGTAATGCTGTAAATAC TGCTGTGAAGAC GGAGAAAGAAGGTAGTGATGGAACCGTGCCAAAAAAGACGGTGCTTAATTGGTTATTGGACAGATAGAAAAACCAGTATATATTCTTGTGAATTAGCTCTTCTAGTTATGC GGCCTTCTCAAAGTTATATGATGAGTA TTGTTATAATGTGGGAGTAACAGGAGTGGAGAAAAAAAAATCAAAATCTTCCTTACATGCAGATCAAGCATGTGGTGGTGTTGTATCTCTTATTTACAAAGATTGATCAAGGATAATATATTTAGGAGGCTTCTGAGCCTGGCCTCCTAGCGGGAGAACGGTAGGGCTCATATGGTTTTGGGGAGGCTTGCAACTGGAGTGGTAGAGAACATGGGTCCCCCTTTTTTGCACCATACTTCAATTTGTAATTGCCGAGCTGATGGATAGCTGCATGGTTGTATCTTTGTACAGATGTTTCAGATGGTGAGTTCCCAGCAGGAAAGCATTGTGCACTATAGTTAAACTCTGGATTAATCTTCTTCA AAAAAAAga ]
[-] EMBL CB685862 [ AGACACTATGACTATTGATTTATCATCTTTGCCTGATGCTTTAGATCTTGTGACGACATCAGACAATAGAATACGTTTGCTTGTTGCTGAGGCTCAACTTCTGTCACGAGATGATGAACAGGGCTCTTCTGATGATGGTGATAATTCTGATGGTAAATCCTCAGTTA CCATGAG CAGTGAAGATGCATATGTTACTGATGAAGAGACAACAAAAATGTTATCTGATCTGCTTATTGACAATGCACAACTGAGGTTG CGCTTGAATTCTCTCATCCGTAATGCTGTAAATAC TGCTGTGAAGAC GGAGAAAGAAGGTAGTGATGGAACCGTGCCAAAAAAGACGGTGCTTAATTGGTTATTGGACAGATAGAAAAACCAGTATATATTCTTGTGAATTAGCTCTTCTAGTTATGC GGCCTTCTCAAAGTTATATGATGAGTA TTGTTATAATGTGGGAGTAACAGGAGTGGAGAAAAAAAAATCAAAATCTTCCTTACATGCAGATCAAGCATGTGGTGGTGTTGTATCTCTTATTTACAAAGATTGATCAAGGATAATATATTTAGGAGGCTTCTGAGCCTGGCCTCCTAGCGGGAGAACGGTAGGGCTCATATGGTTTTGGGGAGGCTTGCAACTGGAGTGGTAGAGAACATGGGTCCCCCTTTTTTGCACCATACTTCAATTTGTAATTGCCGAGATGATGGATAGCTGCATGGTTGTATCTTTGTACAGATGTTTCAGATGGTGAGTTCCCAGCAGGAAAGCATGGTACACTATAGTTAAACTCTGGATTAATCTTCTT ]
[-] EMBL CB630310 [ ACACCATGACTATTGATTTATCATCTTTGCCTGATGCTTTAGATCTTGTGACGACATCAGACAATAGAATACGCTTGCTTGTTGCTGAGGCTCAACTTCTGTCACGAGATGATGAACAGGGCTCTTCTGATGATGGCGATAATTCTGATGGTAAATCCTCAGTTA CCATGAG CAGTGAAGATGCATATGTTACTGATGAAGAGACAACAAAAATGTTATCTGATCTGCTTATTGACAATGCACAACTGAGGTTG CGCTTGAATTCTCTCATCCGTAATGCTGTAAATAC TGCTGTGAAGAC GGAGAAAGAAGGTAGTGATGGAACCGTGCCAAAAAAGACGGTGCTTAATTGGTTATTGGACAGATAGAAAAACCAGTATATATTCTTGTGAATTAGCTCTTCTAGTTATGC GGCCTTCTCAAAGTTATATGATGAGTA TTGTTATAATGTGGGAGTAACAGGAGTGGAGAAAAAAAAATCAAAATCTTCCTTACATGCAGATCAAGCATGTGGTGGTGTTGTATCTCTTATTTACAAAGATTGATCAAGGATAATATATTTAGGTGGCTTCTGAGCCTGGCCTCCTAGCGGGAGAACGGTAGGGCTCATATGGTTTTGGGGAGGCTTTCAACTGGAGTGGTAGAG CATGGGTCCCCCTTTTTTGCACCATACTTCAATTTGTAATTGCCGAGCTGATGGATAGCTGCATGGTTGTATCTTTGTACAGATGTTTCAGATGGTGAGTTCCCAGCAGGAAAGCATTGTACACTATA ]
[+] EMBL AU063422 [ TCTGTCACGAGATGATGAACAGGGCTCTTCTGATGATGGTGATAATTCTGATGGTAAATCCTCAGTTA CCATGAG CAGTGAAGATGCATATGTTACTGATGAAGAGACAACAAAAATGTTATCTGATCTGCTTATTGACAATGCACAACTGAGGTTG CGCTTGAATTCTCTCATCCGTAATGCTGTAAATAC TGCTGTGAAGAC GGAGAAAGAAGGTAGTGATGGAACCGTGCCAAAAAAGACGGTGCTTAATTGGTTATTGGACAGATAGAAAAACCAGTATATATTCTTGTGAATTAGCTCTTCTAGTTATGC GGCCTTCTCAAAGTTATATGATGAGTA TTGTTATAATGTGGGAGTAACAGGAGTGGAGAAAAAAAAATCAA ]
[+] EMBL AU063569 [ TCTGTCACGAGATGATGAACAGGGCTCTTCTGATGATGGTGATAATTCTGATGGTAAATCCTCAGTTA CCATGAG CAGTGAAGATGCATATGTTACTGATGAAGAGACAACAAAAATGTTATCTGATCTGCTTATTGACAATGCACAACTGAGGTTG CGCTTGAATTCTCTCATCCGTAATGCTGTAAATAC TGCTGTGAAGAC GGAGAAAGAAGGTAGTGATGGAACCGTGCCAAAAAAGACGGTGCTTAATTGGTTATTGGACAGATAGAAAAACCAGTATATATTCTTGTGAATTAGCTCTTCTAGTTATGCGGGCCTTCTCAAAGTTATATGATGGGTATTTGTTATAATGTGG ]
[+] EMBL AU163311 [ TCTGTCACGAGATGATGAACAGGGCTCTTCTGATGATGGTGATAATTCTGATGGTAAATCCTCAGTTA CCATGAG CAGTGAAGATGCATATGTTACTGATGAAGAGACAACAAAAATGTTATCTGATCTGCTTATTGACAATGCACAACTGAGGTTG CGCTTGAATTCTCTCATCCGTAATGCTGTAAATACTTGCTGTGAAGACGGGAGAAAGAAGGTAGTNATGGGACCGTGCCAAAAAAGCGGGTGCTTAATT ]
[+] EMBL AU163312 [ CTTCTGATGATGGTGATAATTCTGATGGTAAACCCTCAGTTACCCATGAG CAGTGAAGATGCATATGTTACTGATGAAGAGACAACAAAAATGTTATCTGATCTGCTTATTGACAATGCACAACTGAGGTTG CGCTTGAATTCTCTCATCCGTAATGCTGTAAATAC TGCTGTGAAGAC GGAGAAAGAAGGTAGTGATGGAACCGTGCCAAAAAAGACGGTGCTTAATTGGTTATTGGACAGATAGAAAAACCAGTATATATTCTTGTGAATTAGCTCTTCTAGTTATGC GGCCTTCTCAAAGTTATATGATGAGTA TTGTTATAATGTGGGAGTAACAGGAGTGGAGAAAAAAAAATCAAAATCTTCCTTACATGCAGATCAAGCATGTGGTGGTGTTGTATCTCTTATTTACAAAGATTGATCAAGGATAATATATTTAGGAGGCTTCTGAGCCTGGCCTCCTAGCGGGAGAACGGTAGGGCTCATATGGTTTTGGGGAGGCTTGCAACTGGAGTGGTAGAGAACATGGGTCCCCCTTTTTTGCACCATACTTCAATTTGTAATTGCCGAGCTGATGGATAGCTGCATGGTTGTATCTTTGTACAGATGTTTCAGATGGTGAGTTCCCAGCAGGAAAGCATTGTACACTATAGTTAAACTCTGGATTAATCTTCTTCACCCATAAAAAAAAAA ]
[+] EMBL AU093019 [ ttcCTGATGATGGTGATAATTCTGATGGTAATCCCTCAGTTACCCATGAGCCAGTGAAGATGCATATGTTACTGATGAAGAGACAACAAAAATGTTATCTGATCTGCTTATTGACAATGCACAACTGAGGTTGCCGCTTGAATTCTCTCATCCGTAATGCTGTAAATAC TGCTGTGAAGAC GGAGAAAGAAGGTAGTGATGGAACCGTGCCAAAAAAGACGGTGCTTAATTGGTTATTGGACAGATAGAAAAACCAGTATATATTCTTGTGAATTAGCTCTTCTAGTTATGC GGCCTTCTCAAAGTTATATGATGAGTA TTGTTATAATGTGGGAGTAACAGGAGTGGAGAAAAAAAAATCAAAATCTTCCTTACATGCAGATCAAGCATGTGGTGGTGTTGTATCTCTTATTTACAAAGATTGATCAAGGATAATATATTTAGGAGGCTTCTGAGCCTGGCCTCCTAGCGGGAGAACGGTAGGGCTCATATGGTTTTGGGGAGGCTTGCAACTGGAGTGGTAGAGAACATGGGTCCCCCTTTTTTGCACCATACTTCAATTTGTAATTGCCGAGCTGATGGATAGCTGCATGGTTGTATCTTTGTACAGATGTTTCAGATGGTGAGTTCCCAGCAGGAAAGCATTGTACACTATAGTTAAACTCTGGATTAATCTTCTTCACCCATAAAAAAAAAA ]
[+] EMBL AU165250 [ CTAAGGTTG CGCTTGAATTCTCTCATCCGTAATGCTGTAAATACNGGCTGTNAAGAC GGAGAAAGAAGGTAGTGATGGAACCGTGCCAAAAAAGACGGTGCTTAATTGGTTATTGGACAGATAGAAAAACCAGTATATATTCTTGTGAATTAGCTCTTCTAGTTATGC GGCCTTCTCAAAGTTATATGATGAGTA TTGTTATAATGTGGGAGTAACAGGAGTGGAGAAAAAAAAATCAAAATCTTCCTTACATGCAGATCAAGCATGTGGTGGTGTTGTATCTCTTATTTACAAAGATTGATCAAGGATAATATATTTAGGAGGCTTCTGAGCCTGGCCTCCTAGCGGGAGAACGGTAGGGCTCATATGGTTTTGGGNAGGCTTGCAACTGGAGTGGTAGAGAACATGGGTCCCCCTTTTTTGCACCATACTTCAATTTGTAATTGCCGAGCTGATGGATAGCTGCATGGTTGTATCTTTGTACAGATGTTTCAGATGGTGAGTTCCCAGCAGGAAAGCATTGTACACTATAGTTAAACTCTGGATTAATCTTCTTCACCCATAAAAAAAAAA ]
[+] EMBL AU166704 [ CCAGTATATATTCTTGTGAATTAGCTCTTCTAGTTATGC GGCCTTCTCAAAGTTATATGATGAGTA TTGTTATAATGTGGGAGTAACAGGAGTGGAGAAAAAAAAATCAAAATCTTCCTTACATGCAGATCAAGCATGTGGTGGTGTTGTATCTCTTATTTACAAAGATTGATCAAGGATAATATATTTAGGAGGCTTNTGAGCCTGGCCTCCTAGCGGGAGAACGGTAGGGCTCATATGGTTTTGGGGAGGCTTGCAACTGGAGTGGTANAGAACATGGGTCCCCCTTTTTTGCNCCATACTTCAATTTGTAATTGCCGAGCTGATGGATAGCTGCATGGTTGTATCTTTGTACAGATGTTTCAGATGGTGAGTTCCCAGCAGGAAAGCATTGTACACTATAGTTAAACTCTGGATTAATCTTCTTCACCCAAAAAAAAAAA ]
consensusID : consensus_14756#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 430 fasta sequence
[TAGCTCTTCTAGTTATGCGGCCTTCTCAAAGTTATATGATGAGTATTGTTATAATGTGGGAGTAACAGGAGTGGAGAAAAAAAAATCAAAATCTTCCTTACATGCAGATCAAGCATGTGGTGGTGTTGTATCTCTTATTTACAAAGATTGATCAAGGATAATATATTTAGGAGGCTTCTGAGCCTGGCCTCCTAGCGGGAGAACGGTAGGGCTCATATGGTTTTGGGGAGGCTTGCAACTGGAGTNGTAGAGAACATGGGTCCCCTTTTTTTGCACCATACTTCAATTTGTAATTGCCGAGCTGATGGATAGCTGCATNGTTGTATCTTTGTACAGATGTTTCAGATGGTGAGTTNCCAGCAGGAAGCATTTGTACACTATAGTTAAACTCTGGATTATCTNCTCACCCTAGAGTCTCACTGTAAAAAAA]
[+] EMBL OSC31021 [TAGCTCTTCTAGTTATGCGGCCTTCTCAAAGTTATATGATGAGTATTGTTATAATGTGGGAGTAACAGGAGTGGAGAAAAAAAAATCAAAATCTTCCTTACATGCAGATCAAGCATGTGGTGGTGTTGTATCTCTTATTTACAAAGATTGATCAAGGATAATATATTTAGGAGGCTTCTGAGCCTGGCCTCCTAGCGGGAGAACGGTAGGGCTCATATGGTTTTGGGGAGGCTTGCAACTGGAGTNGTAGAGAACATGGGTCCCCTTTTTTTGCACCATACTTCAATTTGTAATTGCCGAGCTGATGGATAGCTGCATNGTTGTATCTTTGTACAGATGTTTCAGATGGTGAGTTNCCAGCAGGAAGCATTTGTACACTATAGTTAAACTCTGGATTATCTNCTCACCCTAGAGTCTCACTGTAAAAAAA]
consensusID : consensus_14756#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence
[TTTTGGGGAGGCTTTCAACTGGAGTGGTAGAGCATGGGTCCCCCTTTTTTGCACCATACTTCAATTTGTAATTGCCGAGCTGATGGATAGCTGCATGGTTGTATCTTTGTACAGATGTTTCAGATGGTGAGTTCCCAGCAGGAAAGCATTGTACACTATAGTTAAACTCTGGATTAATCTTCTTCACCCATAGAGTGCTCAACTGTTAAATCAGTACTTCTTAAAAAAAAAAAAAA]
[-] EMBL CA762243 [TTTTGGGGAGGCTTTCAACTGGAGTGGTAGAGCATGGGTCCCCCTTTTTTGCACCATACTTCAATTTGTAATTGCCGAGCTGATGGATAGCTGCATGGTTGTATCTTTGTACAGATGTTTCAGATGGTGAGTTCCCAGCAGGAAAGCATTGTACACTATAGTTAAACTCTGGATTAATCTTCTTCACCCATAGAGTGCTCAACTGTTAAATCAGTACTTCTTAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14756#0 GCCACCGCCGCGCGTTGACGGTTAGACGCCACCGCGGGAGGAGAGCCCCTCCCTCCCCGT 60
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 CCGCGTCCGCGTCCGCCTCATCTCCGCCGCCCTCTTACTCCCCCTCCCCTTCCTCCACTC 120
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 CGTCCACCTCGGAATCGTCGGCGCGACGCCTCCAAACCCCCGCATCGATTCCTCCCTCCC 180
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 ACCTCACCCCACCCTTCCGCCCGCTCGATCCACCGCCGAAGCGGGCGGCGATGGCGACGC 240
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 CGTCGTCGTTTTCGTCGGCGAGGAAGAAGGCGCCGAGCCCGCCGAAGCACCGCCACGACG 300
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 GCACCTCCGGGCTGCCGTTCGGCATGGACTGGAGCCCGCCCCCGAAGAGATGGGAGGGAA 360
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 GGAACACCATATGGCCACATAACCCTCAAACCGGATGGAGTTACTGTGTGATGATTCCTT 420
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 CTTGGATCGCTCAGACACCTGAAGCTAGTGCGACTGCTGACAACTTCTTGAAATCCATAG 480
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 TTTTTTACAGGATACATGTTGGTATACAATCTCCAGAAGGCATCAGCTCTAGCCACGGAG 540
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 TTCTTCGAAGGTTTAGTGACTTTCTAAAGTTATCTTCTGATCTTAAGCAGGAATTTCCCA 600
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 GAAAAGGAATCCCCCCTGCTCCACCGAAGCATGCCTTTTCAAGAATAAATTCAAGCAGGG 660
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 TGCTTCTAGAAGAGAGAAGGAACGCTTTGGAGGAGTGGATGCAAAAGCTACTTTCTGACA 720
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 TTGAGTTGTCGAGAAGTGCACCTGTTGCTGCTTTTCTTGAGCTGGAAGCTGCTGCACGCT 780
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 CATATTACCAAGATTGGAATCAGCGCCCTTCTGAAGTGGGTTCTTCAGCAAAAAGTAGTG 840
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 CAGATTCTTCTCCGCGTCCTGATGAACATGGTTCAGGTGTTCTCTCTGAGTCCAGTCAAA 900
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 TGAATTCAGCCTTTGCTCATGGTAACGGTCCGACAGGAGCAACTGGTAATGGTATGCTGG 960
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 GAGAGTCTATCTTAGATCAGCCCAATGAGCGGGCTAGTAGCATGTCAAATCACAGGAAAA 1020
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 AGAACCATGTCTTTTTGGAACATGGTGTTAGGAATGGTTCCATAGATACTTATAAGGGAG 1080
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 TGGTTTCCGAAGAGGATCACGATTCTAACCCTGGCCATGCCAGGAAGGACTCTGCTGAAA 1140
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 GTATAGGAAGTGATTTGAGTTCTTTGAGGGGCAGTGAATTATCGGTTCCTGGAGTTAGTA 1200
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 GTTCCCTTTGGGATGGTCCTGTGGATCTTCCAAGTGGAATTGATGGACATAGCCAAACAG 1260
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 AACAATTTACAGGTTTAGATATGCAGCTTTTATATGATATGGATGCACAAATCATCCTTC 1320
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 CTGCTGATCAAAGGCCGAAGTTGACTAGACTTTTGATCAGCATGGACAGAAGACAGGTGA 1380
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 CAGCAAAAACTGATATGGAGGATCTCATAGCACGACTAAATCAGGAAGTGGCTGTCAAAG 1440
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 AATATCTTGCGACAAAGGTCAAAGATTTGGAGGTTGAGTTGGAAGCTACGAAGAAAAAAG 1500
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 ACAAAGAGATTCTACATCAGGCTGTTTTGACCGAAAGAGAGAAAATTACCCAACTTCAAT 1560
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 GGGATAAGGATGAGCTCTACAGGAAGTACTCTGAAATGGAGTCAAACCTGAAGATTGAAC 1620
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 AAAATGAGAAAACTCGTGTGCAGTCAGAGAAAACAACTGCTAGCGGTGAAAAAGAAATGT 1680
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 TACTGGAAGAGCTAGAAACTAAACGAAAAGAAGTTGAGAGTTTGCAGCAACATATTGGAG 1740
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 AATTCGAGGCAAAGTCTAAAGCAGATATAAAAGTTCTTGTTAAAGAGGTGAAATCTCTTC 1800
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 GGAACTCCCAAAAAGAGATGAAGAAAGTGCTGAATCAGTATCATGAGGAGAAGACTGAAT 1860
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 TAGAGAGGATTGTTAACAGGGAGAAACAGCGGTCAACACGTGCAAGGTTCTCCCGTGAAA 1920
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 AAATTCTTCACGAATGCAGACTGCTCCGTGAGCGTCTACAGGAATGTACTGCCAAGTTTG 1980
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 TTGCAGATGAGCAAGACACTATGACTATTGATTTATCATCTTTGCCTGATGCTTTAGATC 2040
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 TTGTGACGACATCAGACAATAGAATACGTTTGCTTGTTGCTGAGGCTCAACTTCTGTCAC 2100
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 GAGATGATGAACAGGGCTCTTCTGATGATGGTGATAATTCTGATGGTAAATCCTCAGTTA 2160
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 CCATGAGCAGTGAAGATGCATATGTTACTGATGAAGAGACAACAAAAATGTTATCTGATC 2220
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 TGCTTATTGACAATGCACAACTGAGGTTGCGCTTGAATTCTCTCATCCGTAATGCTGTAA 2280
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 ATACTGCTGTGAAGACGGAGAAAGAAGGTAGTGATGGAACCGTGCCAAAAAAGACGGTGC 2340
consensus_14756#1 ------------------------------------------------------------
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 TTAATTGGTTATTGGACAGATAGAAAAACCAGTATATATTCTTGTGAATTAGCTCTTCTA 2400
consensus_14756#1 -------------------------------------------------TAGCTCTTCTA 11
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 GTTATGCGGCCTTCTCAAAGTTATATGATGAGTATTGTTATAATGTGGGAGTAACAGGAG 2460
consensus_14756#1 GTTATGCGGCCTTCTCAAAGTTATATGATGAGTATTGTTATAATGTGGGAGTAACAGGAG 71
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 TGGAGAAAAAAAAATCAAAATCTTCCTTACATGCAGATCAAGCATGTGGTGGTGTTGTAT 2520
consensus_14756#1 TGGAGAAAAAAAAATCAAAATCTTCCTTACATGCAGATCAAGCATGTGGTGGTGTTGTAT 131
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 CTCTTATTTACAAAGATTGATCAAGGATAATATATTTAGGAGGCTTCTGAGCCTGGCCTC 2580
consensus_14756#1 CTCTTATTTACAAAGATTGATCAAGGATAATATATTTAGGAGGCTTCTGAGCCTGGCCTC 191
consensus_14756#2 ------------------------------------------------------------
consensus_14756#0 CTAGCGGGAGAACGGTAGGGCTCATATGGTTTTGGGGAGGCTTGCAACTGGAGTGGTAGA 2640
consensus_14756#1 CTAGCGGGAGAACGGTAGGGCTCATATGGTTTTGGGGAGGCTTGCAACTGGAGTNGTAGA 251
consensus_14756#2 -----------------------------TTTTGGGGAGGCTTTCAACTGGAGTGGTAGA 31
************** ********** *****
consensus_14756#0 GAACATGGGTCCCCCTTTTTTGCACCATACTTCAATTTGTAATTGCCGAGCTGATGGATA 2700
consensus_14756#1 GAACATGGGTCCCCTTTTTTTGCACCATACTTCAATTTGTAATTGCCGAGCTGATGGATA 311
consensus_14756#2 G--CATGGGTCCCCCTTTTTTGCACCATACTTCAATTTGTAATTGCCGAGCTGATGGATA 89
* *********** *********************************************
consensus_14756#0 GCTGCATGGTTGTATCTTTGTACAGATGTTTCAGATGGTGAGTTCCCAGCAGGAAAGCAT 2760
consensus_14756#1 GCTGCATNGTTGTATCTTTGTACAGATGTTTCAGATGGTGAGTTNCCAGCAGGAAGCATT 371
consensus_14756#2 GCTGCATGGTTGTATCTTTGTACAGATGTTTCAGATGGTGAGTTCCCAGCAGGAAAGCAT 149
******* ************************************ ********** *
consensus_14756#0 TGTACACTATAGTTAAACTCTGGATTAATCTTCTTCACCCATAAAAAAAAAAACTGTTAA 2820
consensus_14756#1 TGTACACTATAGTTAAACTCTGGATTA--TCTNCTCACCCT---AGAGTCTCACTGTAAA 426
consensus_14756#2 TGTACACTATAGTTAAACTCTGGATTAATCTTCTTCACCCATAGAGTGCTCAACTGTTAA 209
*************************** * ****** * ***** **
consensus_14756#0 ATCAGTACTTCTTACTCATGCAGTTGCACCTCTTCCAGACTG 2862
consensus_14756#1 AAAA-------------------------------------- 430
consensus_14756#2 ATCAGTACTTCTTAAAAAAAAAAAAAA--------------- 236
* *
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||