cluster # 1478

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Oryza sativa
cluster # 1478 cluster # 1478 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1478#0 length = 1036 sequences # 1

consensus_1478#1 length = 133 sequences # 1

consensusID : consensus_1478#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1036
fasta sequence

                              [CAAGAGCTGGAGGGAATTTCCACATGCAGATGAGTATGACTTAGAACAAGCCGAGTCTCGTGAACATAAGAGGTGGATGGAGAGGCAGAATGCAAAACTACAGGAGAAGGCCAAAAAGGTGGAGTATGCGCGAGTACGGACTCTTGTTGACAATGCTTACAAAAAGGACCCACGAATTCAGCGGAGGAAGGAGGAGGAGAAGGCTGAGAAACAGAGGAGGAAGGAGGCAAAATACCTGGCCAAAAAGATGCAAGAGGAAGAAGCTGCAAGGGCTGCAGAAGAGGAAAGGAAGAGGAAAGAAGAGGAAGCAAAGAGAGCTGCAGAGGCTGCTCTCAATCAGAAAAAGTTGAAGGAGAAGGAGAAGAAGCTGCTACGCAAAGAGAAAACCCGTCTGCGCAATCTTGTTGCACCGGTAGTTGCAGAGAGCCACTTTTCTCTGTCAGAAGATGATGTCGAAACAGCATGCTCGTCACTTGATATGGAACGACTGAAGAAGCTCTGTGATAGCATGGAGAACAAAGATACAACAGAAAAGGCCAGATTACTCAGTGGTGCTCTGAGCAAAGAAGGCTCGTCTGGTACTTCAAATGAAGGAAAGAAAATTCAAGCAAACGGCGTGGATGGTTCCAAAGCAAAATCCACCTCTTCAGGTGAGAAGGTCACGCAAGGCAATACACTAAGCAACTATGAGAAGAAAGAAGAGAAACCATGGGGAAGGGAAGAGATCGAGTTGCTTAGGAAAGCAATACAAAAGTATCCAAAGGGAACCTCCCGGAGGTGGGAGGTTGTCTCTGAGTTTATTGGAACTGGAAGATCTGTTGAAGAAATTCTGAAGGCTACAAAGACTGTTCTTTTGCAGAAACCGGACTCTACCAAAGCTTTTGACTCTTTCCTTGAGAAACGCAAGCCAGCACCGTCCATTGCATCACCTCTTTCTGTAAGAACTGAAACAGTTGGTTTGCCTACTGAGAAAGCAGCTGGAAATGCATCATCCAAAGCGCCTGCACAACATGCAAGCAGTAAAACATCCGACGAG]

[+] EMBL AK112087             [CAAGAGCTGGAGGGAATTTCCACATGCAGATGAGTATGACTTAGAACAAGCCGAGTCTCGTGAACATAAGAGGTGGATGGAGAGGCAGAATGCAAAACTACAGGAGAAGGCCAAAAAGGTGGAGTATGCGCGAGTACGGACTCTTGTTGACAATGCTTACAAAAAGGACCCACGAATTCAGCGGAGGAAGGAGGAGGAGAAGGCTGAGAAACAGAGGAGGAAGGAGGCAAAATACCTGGCCAAAAAGATGCAAGAGGAAGAAGCTGCAAGGGCTGCAGAAGAGGAAAGGAAGAGGAAAGAAGAGGAAGCAAAGAGAGCTGCAGAGGCTGCTCTCAATCAGAAAAAGTTGAAGGAGAAGGAGAAGAAGCTGCTACGCAAAGAGAAAACCCGTCTGCGCAATCTTGTTGCACCGGTAGTTGCAGAGAGCCACTTTTCTCTGTCAGAAGATGATGTCGAAACAGCATGCTCGTCACTTGATATGGAACGACTGAAGAAGCTCTGTGATAGCATGGAGAACAAAGATACAACAGAAAAGGCCAGATTACTCAGTGGTGCTCTGAGCAAAGAAGGCTCGTCTGGTACTTCAAATGAAGGAAAGAAAATTCAAGCAAACGGCGTGGATGGTTCCAAAGCAAAATCCACCTCTTCAGGTGAGAAGGTCACGCAAGGCAATACACTAAGCAACTATGAGAAGAAAGAAGAGAAACCATGGGGAAGGGAAGAGATCGAGTTGCTTAGGAAAGCAATACAAAAGTATCCAAAGGGAACCTCCCGGAGGTGGGAGGTTGTCTCTGAGTTTATTGGAACTGGAAGATCTGTTGAAGAAATTCTGAAGGCTACAAAGACTGTTCTTTTGCAGAAACCGGACTCTACCAAAGCTTTTGACTCTTTCCTTGAGAAACGCAAGCCAGCACCGTCCATTGCATCACCTCTTTCTGTAAGAACTGAAACAGTTGGTTTGCCTACTGAGAAAGCAGCTGGAAATGCATCATCCAAAGCGCCTGCACAACATGCAAGCAGTAAAACATCCGACGAG]




>consensus_1478#0
CAAGAGCTGGAGGGAATTTCCACATGCAGATGAGTATGACTTAGAACAAGCCGAGTCTCG
TGAACATAAGAGGTGGATGGAGAGGCAGAATGCAAAACTACAGGAGAAGGCCAAAAAGGT
GGAGTATGCGCGAGTACGGACTCTTGTTGACAATGCTTACAAAAAGGACCCACGAATTCA
GCGGAGGAAGGAGGAGGAGAAGGCTGAGAAACAGAGGAGGAAGGAGGCAAAATACCTGGC
CAAAAAGATGCAAGAGGAAGAAGCTGCAAGGGCTGCAGAAGAGGAAAGGAAGAGGAAAGA
AGAGGAAGCAAAGAGAGCTGCAGAGGCTGCTCTCAATCAGAAAAAGTTGAAGGAGAAGGA
GAAGAAGCTGCTACGCAAAGAGAAAACCCGTCTGCGCAATCTTGTTGCACCGGTAGTTGC
AGAGAGCCACTTTTCTCTGTCAGAAGATGATGTCGAAACAGCATGCTCGTCACTTGATAT
GGAACGACTGAAGAAGCTCTGTGATAGCATGGAGAACAAAGATACAACAGAAAAGGCCAG
ATTACTCAGTGGTGCTCTGAGCAAAGAAGGCTCGTCTGGTACTTCAAATGAAGGAAAGAA
AATTCAAGCAAACGGCGTGGATGGTTCCAAAGCAAAATCCACCTCTTCAGGTGAGAAGGT
CACGCAAGGCAATACACTAAGCAACTATGAGAAGAAAGAAGAGAAACCATGGGGAAGGGA
AGAGATCGAGTTGCTTAGGAAAGCAATACAAAAGTATCCAAAGGGAACCTCCCGGAGGTG
GGAGGTTGTCTCTGAGTTTATTGGAACTGGAAGATCTGTTGAAGAAATTCTGAAGGCTAC
AAAGACTGTTCTTTTGCAGAAACCGGACTCTACCAAAGCTTTTGACTCTTTCCTTGAGAA
ACGCAAGCCAGCACCGTCCATTGCATCACCTCTTTCTGTAAGAACTGAAACAGTTGGTTT
GCCTACTGAGAAAGCAGCTGGAAATGCATCATCCAAAGCGCCTGCACAACATGCAAGCAG
TAAAACATCCGACGAG

consensusID : consensus_1478#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 133
fasta sequence

                              [GAATCGGCACGAGGGGAACCTCCCGGAGGTGGGAGGTTGTCTCTGAGTTTATTGGAACTGGAAGATCTGTTGAAGAAATTCTGAAGGCTACAAAGACTGTTCTTTTGCAGAAACCGGACTCTACCAAAGCTTT]

[+] EMBL CA999422             [GAATCGGCACGAGGGGAACCTCCCGGAGGTGGGAGGTTGTCTCTGAGTTTATTGGAACTGGAAGATCTGTTGAAGAAATTCTGAAGGCTACAAAGACTGTTCTTTTGCAGAAACCGGACTCTACCAAAGCTTT]




>consensus_1478#1
GAATCGGCACGAGGGGAACCTCCCGGAGGTGGGAGGTTGTCTCTGAGTTTATTGGAACTG
GAAGATCTGTTGAAGAAATTCTGAAGGCTACAAAGACTGTTCTTTTGCAGAAACCGGACT
CTACCAAAGCTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1478#0      CAAGAGCTGGAGGGAATTTCCACATGCAGATGAGTATGACTTAGAACAAGCCGAGTCTCG 60
consensus_1478#1      ------------------------------------------------------------
                                                                                  

consensus_1478#0      TGAACATAAGAGGTGGATGGAGAGGCAGAATGCAAAACTACAGGAGAAGGCCAAAAAGGT 120
consensus_1478#1      ------------------------------------------------------------
                                                                                  

consensus_1478#0      GGAGTATGCGCGAGTACGGACTCTTGTTGACAATGCTTACAAAAAGGACCCACGAATTCA 180
consensus_1478#1      ------------------------------------------------------------
                                                                                  

consensus_1478#0      GCGGAGGAAGGAGGAGGAGAAGGCTGAGAAACAGAGGAGGAAGGAGGCAAAATACCTGGC 240
consensus_1478#1      ------------------------------------------------------------
                                                                                  

consensus_1478#0      CAAAAAGATGCAAGAGGAAGAAGCTGCAAGGGCTGCAGAAGAGGAAAGGAAGAGGAAAGA 300
consensus_1478#1      ------------------------------------------------------------
                                                                                  

consensus_1478#0      AGAGGAAGCAAAGAGAGCTGCAGAGGCTGCTCTCAATCAGAAAAAGTTGAAGGAGAAGGA 360
consensus_1478#1      ------------------------------------------------------------
                                                                                  

consensus_1478#0      GAAGAAGCTGCTACGCAAAGAGAAAACCCGTCTGCGCAATCTTGTTGCACCGGTAGTTGC 420
consensus_1478#1      ------------------------------------------------------------
                                                                                  

consensus_1478#0      AGAGAGCCACTTTTCTCTGTCAGAAGATGATGTCGAAACAGCATGCTCGTCACTTGATAT 480
consensus_1478#1      ------------------------------------------------------------
                                                                                  

consensus_1478#0      GGAACGACTGAAGAAGCTCTGTGATAGCATGGAGAACAAAGATACAACAGAAAAGGCCAG 540
consensus_1478#1      ------------------------------------------------------------
                                                                                  

consensus_1478#0      ATTACTCAGTGGTGCTCTGAGCAAAGAAGGCTCGTCTGGTACTTCAAATGAAGGAAAGAA 600
consensus_1478#1      ------------------------------------------------------------
                                                                                  

consensus_1478#0      AATTCAAGCAAACGGCGTGGATGGTTCCAAAGCAAAATCCACCTCTTCAGGTGAGAAGGT 660
consensus_1478#1      ------------------------------------------------------------
                                                                                  

consensus_1478#0      CACGCAAGGCAATACACTAAGCAACTATGAGAAGAAAGAAGAGAAACCATGGGGAAGGGA 720
consensus_1478#1      ------------------------------------------------------------
                                                                                  

consensus_1478#0      AGAGATCGAGTTGCTTAGGAAAGCAATACAAAAGTATCCAAAGGGAACCTCCCGGAGGTG 780
consensus_1478#1      -----------------------------GAATCGGCACGAGGGGAACCTCCCGGAGGTG 31
                                                    **      * * ******************

consensus_1478#0      GGAGGTTGTCTCTGAGTTTATTGGAACTGGAAGATCTGTTGAAGAAATTCTGAAGGCTAC 840
consensus_1478#1      GGAGGTTGTCTCTGAGTTTATTGGAACTGGAAGATCTGTTGAAGAAATTCTGAAGGCTAC 91
                      ************************************************************

consensus_1478#0      AAAGACTGTTCTTTTGCAGAAACCGGACTCTACCAAAGCTTTTGACTCTTTCCTTGAGAA 900
consensus_1478#1      AAAGACTGTTCTTTTGCAGAAACCGGACTCTACCAAAGCTTT------------------ 133
                      ******************************************                  

consensus_1478#0      ACGCAAGCCAGCACCGTCCATTGCATCACCTCTTTCTGTAAGAACTGAAACAGTTGGTTT 960
consensus_1478#1      ------------------------------------------------------------
                                                                                  

consensus_1478#0      GCCTACTGAGAAAGCAGCTGGAAATGCATCATCCAAAGCGCCTGCACAACATGCAAGCAG 1020
consensus_1478#1      ------------------------------------------------------------
                                                                                  

consensus_1478#0      TAAAACATCCGACGAG 1036
consensus_1478#1      ----------------