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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14849#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1295 fasta sequence
[AGCAGCTCGAGCAGCTCCAGACCGACCGCGACGCCGCCAAGGACAACGGCGGCGACAAGCCCGCGCCGTCGGACGGCGACATCGTGCTGTACAGGCGGATTGCTGAGGTCAAGGAAAAGGAGCGCAA-GAGGGCTTTG-GAGGAGATACTCTATGCACTTGTTGTCCAGAAGTTTGTTGAAGCTGGTGTTTCTTTGGTTCCAGCTCTTTCCCACTCTATCAGTTCTTCTGGAAGAGTTGATCAGTGGGCAGAATCTGTGGAAGGGAAACTTGAGAAGATGCATTCACAGGAGGCATATGAAATGATCGAGAACCACCTCGCTCTCATCCTGGGGCAGCGGCAAGCTGATGCCACTGTTGCGGCCATAAGTAAACTCCGAGTTGGTCAGGTGTATGCTGCTTCTGTGATGTATGGTTACTTCCTTAAGAGAGTCGATCAGAGATTTCAGCTCGAGAAGTCAATGAAGACCCTCCCTTGGGGATCAGAAGAGGAAGACAAGCTCAACCAAGTTATGACAACGGACTCAAGGCCCTCACCCCAGACTTCTACTTCACATCCAGAGATGGCATCATGGACTTCCCCTAAC--TTCAGTGCAGGCGGACCTAGCCA-AT-CTGTTAAGCCATGCCGTCTTAGATCGTATGTCATGTCATTTGATTCAGAGA-CCCTACAAAGTTACGCAACA-ATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACA-CTGAGGCACTA-TTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACA-GTCGATTCTTCCA-AGGATGAACATGTCAGGATAAGTTTCGCA-GGGTTGAGAAGGCTGATCTTAGAGGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCA-TTTTGTGGCC-A-ACTAGTTGATCCTACAAAGTTTCATCCCAGATAGTGGAGATTAGTGTGTATATTTGGTCCGAAGT-GTATGGGTTT--CA-ATGAAGACTCTTTGCAAAACGAATTTCTCCTGGCTCTATGCAGATCGCA-GAGATCTATGAT-TT-TTACA-CAGT-TTTCGGGCATATAGCTTCAATGTAAAATGGATATTTTTTTAGCCTAATGTGCAGCTGTTAGTTCCTGGTAACA-CTTGGGCTGCTTGGGCCTTGGGTGATGTATAATGTTTTATGACTTGATGTCTGGAAATTGAATGAGGAATCCTAGCTAGCTCTAGTTCAAACTTTAAAAAAAAAATTTTGGCCCTTCATACTGCTTTCTTTTGTTCAATAACCCGTAAAAATATGATAAAAAAAAAA]
[+] EMBL AK060573 [AGCAGCTCGAGCAGCTCCAGACCGACCGCGACGCCGCCAAGGACAACGGCGGCGACAAGCCCGCGCCGTCGGACGGCGACATCGTGCTGTACAGGCGGATTGCTGAGGTCAAGGAAAAGGAGCGCAA GAGGGCTTTG GAGGAGATACTCTATGCACTTGTTGTCCAGAAGTTTGTTGAAGCTGGTGTTTCTTTGGTTCCAGCTCTTTCCCACTCTATCAGTTCTTCTGGAAGAGTTGATCAGTGGGCAGAATCTGTGGAAGGGAAACTTGAGAAGATGCATTCACAGGAGGCATATGAAATGATCGAGAACCACCTCGCTCTCATCCTGGGGCAGCGGCAAGCTGATGCCACTGTTGCGGCCATAAGTAAACTCCGAGTTGGTCAGGTGTATGCTGCTTCTGTGATGTATGGTTACTTCCTTAAGAGAGTCGATCAGAGATTTCAGCTCGAGAAGTCAATGAAGACCCTCCCTTGGGGATCAGAAGAGGAAGACAAGCTCAACCAAGTTATGACAACGGACTCAAGGCCCTCACCCCAGACTTCTACTTCACATCCAGAGATGGCATCATGGACTTCCCCTAAC TTCAGTGCAGGCGGACCTAGCCA AT CTGTTAAGCCATGCCGTCTTAGATCGTATGTCATGTCATTTGATTCAGAGA CCCTACAAAGTTACGCAACA ATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACA CTGAGGCACTA TTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACA GTCGATTCTTCCA AGGATGAACATGTCAGGATAAGTTTCGCA GGGTTGAGAAGGCTGATCTTAGAGGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCA TTTTGTGGCC A ACTAGTTGATCCTACAAAGTTTCATCCCAGATAGTGGAGATTAGTGTGTATATTTGGTCCGAAGT GTATGGGTTT CA ATGAAGACTCTTTGCAAAACGAATTTCTCCTGGCTCTATGCAGATCGCA GAGATCTATGAT TT TTACA CAGT TTTCGGGCATATAGCTTCAATGTAAAATGGATATTTTTTTAGCCTAATGTGCAGCTGTTAGTTCCTGGTAACA CTTGGGCTGCTTGGGCCTTGGGTGATGTATAATGTTTTATGACTTGATGTCTGGAAATTGAATGAGGAATCCTAGCTAGCTCTAG ]
[+] EMBL AK099485 [AGCAGCTCGAGCAGCTCCAGACCGACCGCGACGCCGCCAAGGACAACGGCGGCGACAAGCCCGCGCCGTCGGACGGCGACATCGTGCTGTACAGGCGGATTGCTGAGGTCAAGGAAAAGGAGCGCAA GAGGGCTTTG GAGGAGATACTCTATGCACTTGTTGTCCAGAAGTTTGTTGAAGCTGGTGTTTCTTTGGTTCCAGCTCTTTCCCACTCTATCAGTTCTTCTGGAAGAGTTGATCAGTGGGCAGAATCTGTGGAAGGGAAACTTGAGAAGATGCATTCACAGGAGGCATATGAAATGATCGAGAACCACCTCGCTCTCATCCTGGGGCAGCGGCAAGCTGATGCCACTGTTGCGGCCATAAGTAAACTCCGAGTTGGTCAGGTGTATGCTGCTTCTGTGATGTATGGTTACTTCCTTAAGAGAGTCGATCAGAGATTTCAGCTCGAGAAGTCAATGAAGACCCTCCCTTGGGGATCAGAAGAGGAAGACAAGCTCAACCAAGTTATGACAACGGACTCAAGGCCCTCACCCCAGACTTCTACTTCACATCCAGAGATGGCATCATGGACTTCCCCTAAC TTCAGTGCAGGCGGACCTAGCCA AT CTGTTAAGCCATGCCGTCTTAGATCGTATGTCATGTCATTTGATTCAGAGA CCCTACAAAGTTACGCAACA ATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACA CTGAGGCACTA TTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACA GTCGATTCTTCCA AGGATGAACATGTCAGGATAAGTTTCGCA GGGTTGAGAAGGCTGATCTTAGAGGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCA TTTTGTGGCC A ACTAGTTGATCCTACAAAGTTTCATCCCAGATAGTGGAGATTAGTGTGTATATTTGGTCCGAAGT GTATGGGTTT CA ATGAAGACTCTTTGCAAAACGAATTTCTCCTGGCTCTATGCAGATCGCA GAGATCTATGAT TT TTACA CAGT TTTCGGGCATATAGCTTCAATGTAAAATGGATATTTTTTTAGCCTAATGTGCAGCTGTTAGTTCCTGGTAACA CTTGGGCTGCTTGGGCCTTGGGTGATGTATAATGTTTTATGACTTGATGTCTGGAAATTGAATGAGG ]
[+] EMBL CB670054 [AGCAGCTCGAGCAGCTCCAGACCGACCGCGACGCCGCCAAGGACAACGGCGGCGACAATCCCGCGCCGTCGGACGGCGACATCGTGCTGTACAGGCGGATTGCTGAGGTCAAGGAAAAGGAGCGCAATGAGGGCTTTGAGAGGAGATACTCTATGCACTTGTTGTCCACAAGTTTGTTGAAGCTGGTGTTTCTTTGGTTCCAGATCTTTCCCACTCTATCAGTTCTTCTGGAAGAGGTGATCAGGGGGCAGAATCTGTGGAAGGTAAACTTGAGAACATGCATTCACGGGATGCATATGAAATGATCAAGAACCACCTCGCTCTCATCCTGGGGCAGCGGCGAGCTGATGCCACTGTTGCGGCCATAAGTAAACTCCGAGTTGGACAGGTGTATGCTGCTTCTG ]
[+] EMBL CB672293 [ cCCTACCGCGACGCCGCCAAGGACAACGGCGGCGACAAGCCCGTGCCGTCGGACGGCGACATCGTGCTGTACAGGCGGATTGCTGAGGTCAAGGAAAAGGAGCGCAA GAGGGCTTTG GAGGAGATACTCTATGCACTTGTTGTCCAGAAGTTTGTTGAAGCTGGTGTTTCTTTGGTTCCAGCTCTTTCCCACTCTATCAGTTCTTCTGGAAGAGTTGATCAGTGGGCAGAATCTGTGGAAGGGAAACTTGAGAAGATGCATTCACAGGAGGCATATGAAATGATCGAGAACCACCTCGCTCTCATCCTGGGGCAGCGGCAAGCTGATGCCACTGTTGCGGCCATAAGTAAACTCCGAGTTGGTCAGGTGTATGCTGCTTCTGTGATGTATGGTTACTTCCTTAAGAGAGTCGATCAGAGATTTCAGCTCGAGAAGTCAATGAAGACCCTCCCTTGGGGATCAGAAGAGGAAGACAAGCTCAACCAAGTTATGACAACGGACTCAAGGCCCTCACCCCAGACTTCTACTTCACATCCAGAGATGGCATCATGGACTTCCCCTAAC TTCAGTGCAGGCGGACCTAGCCA AT CTGTTAAGCCATGCCGTCTTAGATCGTATGTCATGTCATTTGATTCAGAGA CCCTACAAAGTTACGCAACA ATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACA CTGAGGCACTA TTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACA GTCGATTCTTCCA AGG ]
[+] EMBL CA999480 [ ATGGTTACTTCCTTAAGAGAGTCGATCAGAGATTTCAGCTCGAGAAGTCAATGAAGACCCTCCCTTGGGGATCAGAAGAGGAAGACAAGCTCAACCAAGTTATGACAACGGACTCAAGGCCCTCACCCCAGACTTCTACTTCACATCCAGAGATGGCATCATGGACTTCCCCTAAC TTCAGTGCAGGCGGACCTAGCCA AT CTGTTAAGC ]
[-] EMBL CB670055 [ GAAGACCCTCCCTTGGGGATCAGAAGAGGAAGACAAGCTCAACCAAGTTATGACAACGGACTCAAGGCCCTCACCCCAGACTTCTACTTCACATCCAGAGATGGCATCATGGACTTCCCCTAAC TTCAGTGCAGGCGGACCTAGCCA AT CTGTTAAGCCATGCCGTCTTAGATCGTATGTCATGTCATTTGATTCAGAGA CCCTACAAAGTTACGCAACA ATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACA CTGAGGCACTA TTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACA GTCGATTCTTCCA AGGATGAACATGTCAGGATAAGTTTCGCA GGGTTGAGAAGGCTGATCTTAGAGGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCA TTTTGTGGCC A ACTAGTTGATCCTACAAAGTTTCATCCCAGATAGTGGAGATTAGTGTGTATATTTGGTCCGAAGT GTATGGGTTT CA ATGAAGACTCTTTGCAAAACGAATTTCTCCTGGCTCTATGCAGATCGCA GAGATCTATGAT TT TTACA CAGT TTTCGGGCATATAGCTTCAATGTAAAATGGATATTTTTTTAGCCTAATGTGCAGCTGTTAGTTCCTGGTAACA CTTGGGCTGCTTGGGCCTTGGGTGATGTATAATGTTTTATGACTTGATGTAAGGAAATTGAATGAGGAATCCTAGCTAGCTCTAGT ]
[+] EMBL BQ907166 [ tTTCCCTTAACTTTTCA TCCAGCCGACCCTAACCA ATCCTGTTAACCCATCCCGTCTTAGATC TATGTCAT TCATTTGATTCAGAGACCCCTACAAAGTTACGCAACA ATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACA CTGAGGCACTA TTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACA GTCGATTCTTCCACAGGATGAACATGTCAGGATAAGTTTCGCACGGGTTGAGAAGGCTGATCTTAGAGGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCACTTTTGTGGCC A ACTAGTTGATCCTACAAAGTTTCATCCCAGGTAGTGGAGATTAGTGTGTATATTTGGTCCGAAGTCGTATGGGTTT CA ATGAAGACTCTTTGCAAAACGAATTTCTCCTGGCTCTATGCAGATCGCA GAGATCTATGAT TT TTACA CAGT TTTCGGGCATATAGCTTCAATGTAAAATGGATATTTTTTTAGCCTAATGTGCAGCTGTTAGTTCCTGGTAACA CTTGGGCTGCTTGGGCCTTGGGTGATGTATAATGTTTTATGACTTGATGTCTGGAAATTGAATGAGGAATCCTAGCTAGCTCTAGTTCAAACTTTAAAAAAAAAA ]
[-] EMBL CB659491 [ TCAGTGCAGGCGGTCCTAGCCA AT CTGTTAAGCCATGCCGTCTTAGATCGTATGTCATGTCATTTGATTCAGAGA CCCTACAAAGTTACGCAACA ATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACA CTGAGGCACTA TTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACA GTCGATTCTTCCA AGGATGAACATGTCAGGATAAGTTTCGCA GGGTTGAGAAGGCTGATCTTAGAGGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCA TTTTGTGGCC A ACTAGTTGATCCTACAAAGTTTCATCCCAGATAGTGGAGATTAGTGTGTATATTTGGTCCGAAGT GTATGGGTTT CA ATGAAGACTCTTTGCAAAACGAATTTCTCCTGGCTCTATGCAGATCGCA GAGATCTATGAT TT TTACA CAGT TTTCGGGCATATAGCTTCAATGTAAAATGGATATTTTTTTAGCCTAATGTGCAGCTGTTAGTTCCTGGTAACA CTTGGGCTGCTTGGGCCTTGGGTGATGTATAATGTTTTATGACTTGATGTCTtg ]
[+] EMBL BI811662 [ aGCGGACCTA CCACAT CTGTTAA CCAT CC TCTTAGATCGTATGTCATGTCATTTGATTCAGAGA CCCTACAAAGTTACGCAACACATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACACCTGAGGCACTA TTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACA GTCGATTCTTCCACAGGATGAACATGTCAGGATAAGTTTCGCA GGGTTGAGAAGGCTGATCTTAGAGGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCACTTTTGTGGCC ACACTAGTTGATCCTACCAAGTTTCATCCCAGGTAGTGGAGATTAGTGTGTATATTTGGTCCGAAGT GTATGGGTTT CACATGAAGACTCTTT CCAAACGAATTTCTCCTGGCTCTATCCAGATC CA GAGATCTATGAT TT TTACA C GT TTTC GGCATATAGCTTCAATGTAAAATGGATATTTTTTTAGCCTAATGTGCAGCTGTTAGTTCCTGGTAAaa aaaa ]
[-] EMBL CK085125 [ T CTGTTAAGCCATGCCGTCTTAGATCGTATGTCATGTCATTTGATTCAGAGA CCCTACAAAGTTACGCAACA ATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACA CTGAGGCACTA TTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACA GTCGATTCTTCCA AGGATGAACATGTCAGGATAAGTTTCGCA GGGTTGAGAAGGCTGATCTTAGAGGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCA TTTTGTGGCC A ACTAGTTGATCCTACAAAGTTTCATCCCAGATAGTGGAGATTAGTGTGTATATTTGGTCCGAAGT GTATGGGTTT CA ATGAAGACTCTTTGCAAAACGAATTTCTCCTGGCTCTATGCAGATCGCA GAGATCTATGAT TT TTACA CAGT TTTCGGGCATATAGCTTCAATGTAAAATGGATATTTTTTTAGCCTAATGTGCAGCTGTTAGTTCCTGGTAACA CTTGGGCTGCTTGGGCCTTGGGTGATGTATAATGTTTTATGACTTGATGTCTGGAAATTGAATGAGGAATCCTAGCTAGCTCTAGTTCAAACTTTAAAAAA ]
[+] EMBL BI811708 [ CCGTCTTAGATCGTATGTCATGTCA TTGATTCAGAGA CCCTAC AAGTTACGC ACA ATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACA CTGAGGCACTATTTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACACGTCGATTCTTCCA AGGATGAACATGTCAGGATAATTTTCGCA GGTTGAGAA GCTGATCTTAGAGGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCA TTTTGTGGCCAA ACTAGTTGATCCTACAAAGTTTCATCCCAGGTAGTGGAGATTAGTGTGTATATTTGGTCCGAAGT GTATGGGTTT CA ATGAAGACTCTTTGC AAACGAATTTCTCCTGGCTCTATGCAGATCGCA GAGATCTATGAT TT TTACA CAGT TTTCGGGCATATAGCTTCAATGTAAAATGGATATTTTTTTAGCCTAATGTGCAGCTGTTAGTTCCTGGTAAaa aaaa ]
[+] EMBL BI813813 [ TACAAAGTTACGCAACA ATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACC CTGAGGCACTA TTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACA GTCGATTCTTCCA AGGATGAACATGTCAGGATAAGTTTCGCA GGGTTGAGAAGGCTGATCTTAGAGGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCA TTTTGTGGCC A ACTAGTTGATCCTACAAAGTTTCATCCCAGGTAGTGGAGATTAGTGTGTATATTTGGTCCGAAGT GTATGGGTTT CA ATGAAGACTCTTTGC AAACGAATTTCTCCTGGCTCTATGCAGATCGCA GAGATCTATGAT TT TTACA CAGT TTTCGGGCATATAGCTTCAATGTAAAATGGATATTTTTTTAGCCTAATGTGCAGCTGTTAGTTCCTGGTAAaa aaaa ]
[+] EMBL BM420985 [ TA TTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACA GTCGATTCTTCCA AGGATGAACATGTCAGGATAAGTTTCGCA GGGTTGAGAAGGCTGATCTTAGAGGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCA TTTTGTGGCC A ACTAGTTGATCCTACAAAGTTTCATCCCAGGTAGTGGAGATTAGTGTGTATATTTGGTCCGAAGT GTATGGGTTT CA ATGAAGACTCTTTGC AAACGAATTTCTCCTGGCTCTATGCAGATCGCA GAGATCTATGAT TT TTACA CAGT TTTCGGGCATATAGCTTCAATGTAAAATGGATATTTTTTTAGCCTAATGTGCAGCTGTTAGTTCCTGGTAACA CTT GGCTGCTT GGCCTTGGGTGATGTATAATGTTTTATGACTTGATGTCTGGAAAaaaa ]
[-] EMBL CB672292 [ TCGATTCTTCCA AGGATGTACATGTCAGGATAAGTTTCGCA GGGTTGAGAAGGCTGATCTTAGAGGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCA TTTTGTGGCC A ACTAGTTGATCCTGCAAAGTTTCATCCCAGATAGTGGAGATTAGTGTGTATATTTGGTCCGAAGT GTATGGGTTT CA ATGAAGACTCTTTGCAAAACGAATTTCTCCTGGCTCTATGCAGATCGCA GAGATCTATGAT TT TTACA CAGT TTTCGGGCATATAGCTTCAATGTAAAATGGATA ]
[+] EMBL BI812735 [ GAAGT GTATGGGTTTCACA ATGAAGACTCTTT CCAAACGAATTTCTCCTGGCTCTATCCAGATCCCACGAGATCTATGATGTTGTTACACCAGTGTTTCGGGCATATAGCTTCCATGTAAAATGGATATTTTTTTAGCCTAATGTGCACCTGTTAGTTCCTGGTAACACCTTGGGCTGCTTGGGCC TGGGTGATGTATAATGTTTTATGACTTGATGTCTGGAAATTGAATGAGGAATCCTAGCTAGCTCTAGTTCCAACTTTACCACAGATTTTTTGGCCCTTCATACTGCTTTCTTTTGTTCAATAACCCGTAAAAATATGATAAAAAAAAAA]
consensusID : consensus_14849#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 551 fasta sequence
[GCTCGTGCCGAATTCGGCACGAGAGAAGAGGAAGACAAGCTCAACCAAGTTATGACAACGGACTCAAGGCCCTCACCCCAGACTTCTACTTCACATCCAGANATGGNATCATGGACTTCCCCTAACTTCAGTGCAGGCGGACCTAGCCAATCTGTTAAGCCATGCCGTCTTAGATCGTATGTCATGTCATTTGATTCAGAAACCCTACAAAGTTACGCAACAATCAGGTCCANGGAGGNATTTGGCATCNTCNAAAAACACACTGAGGNACTATTTGGTNAACCANAAATTGTTATCNCACCTGAAGGGACAGTCNATTCTTCCAAGGATGAACATGTNAGGATAANTTTCGCAGGGTTGANAANGNTGATCTTANAGGCTGTTACTTTTGGATCCNTCCNTTGGGATGTTGANANCTTTGTGGACACCANGTNCCATTTTGTGGCCAACTAGTTGATCCTACAAAGTTTCNTCCCNNATAGTGGANATTAATGTGTNTATTTGGTCCNAAATGTNTGGGTTTCAATGAAAATCTTTGCAAACNAATTTCT]
[+] EMBL AA752035 [GCTCGTGCCGAATTCGGCACGAGAGAAGAGGAAGACAAGCTCAACCAAGTTATGACAACGGACTCAAGGCCCTCACCCCAGACTTCTACTTCACATCCAGANATGGNATCATGGACTTCCCCTAACTTCAGTGCAGGCGGACCTAGCCAATCTGTTAAGCCATGCCGTCTTAGATCGTATGTCATGTCATTTGATTCAGAAACCCTACAAAGTTACGCAACAATCAGGTCCANGGAGGNATTTGGCATCNTCNAAAAACACACTGAGGNACTATTTGGTNAACCANAAATTGTTATCNCACCTGAAGGGACAGTCNATTCTTCCAAGGATGAACATGTNAGGATAANTTTCGCAGGGTTGANAANGNTGATCTTANAGGCTGTTACTTTTGGATCCNTCCNTTGGGATGTTGANANCTTTGTGGACACCANGTNCCATTTTGTGGCCAACTAGTTGATCCTACAAAGTTTCNTCCCNNATAGTGGANATTAATGTGTNTATTTGGTCCNAAATGTNTGGGTTTCAATGAAAATCTTTGCAAACNAATTTCT]
consensusID : consensus_14849#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 455 fasta sequence
[AGCAGCTCGAGCAGCTCCAGACCGACCGCGACGCCGCCAAGGACAACGGCGGCGACAAGCCCGCGCCGTCGGACGGCGACATCGTGCTGTACAGGCGGATTGCTGAGGGTCAAGGAANAGGAGCGCAGAGGCTTGGANGAGATACTCTATGCACTGTTGTNCGAAGTTTGTNGAAGCTGTGTTCTNTGGTNNCAGCTCTTCCACTCTATCAGNNTCTCTGGAGAAGTGATCAGTGGGCAGAATCNGTGAAGGGAANNCTGAGAGATGCTTNACANGAGGCNATTGANTGATCGAAACNNNACTGCTTCATCAGAGGCANCGGCAGCGTGATTNCACGAGACANNGNAGCGGCGAGTCAGGGGTCAAGCGTCTAGCCTGATGCCACTGTNNGCNGCCNTAANGTANNCCTCGNANTGGNTCAGGTTATTGCTNGCTCGTAATTTGGTACTCNTANG]
[+] EMBL CA752984 [AGCAGCTCGAGCAGCTCCAGACCGACCGCGACGCCGCCAAGGACAACGGCGGCGACAAGCCCGCGCCGTCGGACGGCGACATCGTGCTGTACAGGCGGATTGCTGAGGGTCAAGGAANAGGAGCGCAGAGGCTTGGANGAGATACTCTATGCACTGTTGTNCGAAGTTTGTNGAAGCTGTGTTCTNTGGTNNCAGCTCTTCCACTCTATCAGNNTCTCTGGAGAAGTGATCAGTGGGCAGAATCNGTGAAGGGAANNCTGAGAGATGCTTNACANGAGGCNATTGANTGATCGAAACNNNACTGCTTCATCAGAGGCANCGGCAGCGTGATTNCACGAGACANNGNAGCGGCGAGTCAGGGGTCAAGCGTCTAGCCTGATGCCACTGTNNGCNGCCNTAANGTANNCCTCGNANTGGNTCAGGTTATTGCTNGCTCGTAATTTGGTACTCNTANG]
consensusID : consensus_14849#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 330 fasta sequence
[CCAACTTAGTTGATCCTACCAAAGTGTGTCAATGCCCCAGGTTAGTGGGAGATTGAGTGGTGGTGATNATGTGTGGTGCCCGAAGTGGTAATGGGTGTGTGCCAATGGAAGACTGCTTGTGGCCAAACGAATTTCTCCTGGCTCTATGCAGATCGCAGAGATCTATGATTTNTTACCCCGTTTTCGGGCATATAGCTTCCAATGTAAAATGGATATTTTTTTAGCCTGAATGTGCNGCTGTTAGTTCCTGGGTAACCCTTGGGCTGCTTGGGCCCTTGGGTGATGTATAATGTTTTATGACTTGATGTCTGGAAATTGAATGAGGAAAAA]
[+] EMBL BQ908245 [CCAACTTAGTTGATCCTACCAAAGTGTGTCAATGCCCCAGGTTAGTGGGAGATTGAGTGGTGGTGATNATGTGTGGTGCCCGAAGTGGTAATGGGTGTGTGCCAATGGAAGACTGCTTGTGGCCAAACGAATTTCTCCTGGCTCTATGCAGATCGCAGAGATCTATGATTTNTTACCCCGTTTTCGGGCATATAGCTTCCAATGTAAAATGGATATTTTTTTAGCCTGAATGTGCNGCTGTTAGTTCCTGGGTAACCCTTGGGCTGCTTGGGCCCTTGGGTGATGTATAATGTTTTATGACTTGATGTCTGGAAATTGAATGAGGAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14849#0 AGCAGCTCGAGCAGCTCCAGACCGACCGCGACGCCGCCAAGGACAACGGCGGCGACAAGC 60
consensus_14849#3 ------------------------------------------------------------
consensus_14849#1 ------------------------------------------------------------
consensus_14849#2 ------------------------------------------------------------
consensus_14849#0 CCGCGCCGTCGGACGGCGACATCGTGCTGTACAGGCGGATTGCTGAGGTCAAGGAAAAGG 120
consensus_14849#3 ------------------------------------------------------------
consensus_14849#1 ------------------------------------------------------------
consensus_14849#2 ------------------------------------------------------------
consensus_14849#0 AGCGCAAGAGGGCTTTGGAGGAGATACTCTATGCACTTGTTGTCCAGAAGTTTGTTGAAG 180
consensus_14849#3 ------------------------------------------------------------
consensus_14849#1 ------------------------------------------------------------
consensus_14849#2 ------------------------------------------------------------
consensus_14849#0 CTGGTGTTTCTTTGGTTCCAGCTCTTTCCCACTCTATCAGTTCTTCTGGAAGAGTTGATC 240
consensus_14849#3 ------------------------------------------------------------
consensus_14849#1 ------------------------------------------------------------
consensus_14849#2 ------------------------------------------------------------
consensus_14849#0 AGTGGGCAGAATCTGTGGAAGGGAAACTTGAGAAGATGCATTCACAGGAGGCATATGAAA 300
consensus_14849#3 ------------------------------------------------------------
consensus_14849#1 ------------------------------------------------------------
consensus_14849#2 ------------------------------------------------------------
consensus_14849#0 TGATCGAGAACCACCTCGCTCTCATCCTGGGGCAGCGGCAAGCTGATGCCACTGTTGCGG 360
consensus_14849#3 ------------------------------------------------------------
consensus_14849#1 ------------------------------------------------------------
consensus_14849#2 ------------------------------------------------------------
consensus_14849#0 CCATAAGTAAACTCCGAGTTGGTCAGGTGTATGCTGCTTCTGTGATGTATGGTTACTTCC 420
consensus_14849#3 ------------------------------------------------------------
consensus_14849#1 ------------------------------------------------------------
consensus_14849#2 ------------------------------------------------------------
consensus_14849#0 TTAAGAGAGTCGATCAGAGATTTCAGCTCGAGAAGTCAATGAAGACCCTCCCTTGGGGAT 480
consensus_14849#3 ------------------------------------------------------------
consensus_14849#1 ------------------------------------------------------------
consensus_14849#2 ------------------------------------------------------------
consensus_14849#0 CAGAAGAGGAAGACAAGCTCAACCAAGTTATGACAACGGACTCAAGGCCCTCACCCCAGA 540
consensus_14849#3 ------------------------------------------------------------
consensus_14849#1 ------------------------------------------------------------
consensus_14849#2 ------------------------------------------------------------
consensus_14849#0 CTTCTACTTCACATCCAGAGATGGCATCATGGACTTCCCCTAACTTCAGTGCAGGCGGAC 600
consensus_14849#3 ------------------------------------------------------------
consensus_14849#1 ------------------------------------------------------------
consensus_14849#2 ------------------------------------------------------------
consensus_14849#0 CTAGCCAATCTGTTAAGCCATGCCGTCTTAGATCGTATGTCATGTCATTTGATTCAGAGA 660
consensus_14849#3 ------------------------------------------------------------
consensus_14849#1 ------------------------------------------------------------
consensus_14849#2 ------------------------------------------------------------
consensus_14849#0 CCCTACAAAGTTACGCAACAATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACA 720
consensus_14849#3 ------------------------------------------------------------
consensus_14849#1 -----------------------------GCTCGTGCCGAATTCGGCACGAGAGAAGAGG 31
consensus_14849#2 ------------------------------------------------------------
consensus_14849#0 CTGAGGCACTATTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACAGTCGATTCTT 780
consensus_14849#3 ------------------------------------------------------------
consensus_14849#1 AAGACAAGCTCAACCAAGTTATGACAACGGACTCAAGGCCCTCACCCCAGACTTCTACTT 91
consensus_14849#2 ------------------------------------------------------------
consensus_14849#0 CCAAGGATGAACATGTCAGGATAAGTTTCGCAGGGTTGAGAAGGCTGATCTTAGAGGCTG 840
consensus_14849#3 ------------------------------------------------------------
consensus_14849#1 CACATCCAGANATGGNATCATGGACTTCCCCTAACTTCAGTGCAGGCGGACCTAGCCAAT 151
consensus_14849#2 -------------------------AGCAGCTCGAGCAGCTCCAGACCGACCGCGACGCC 35
consensus_14849#0 TTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTT-GTGGAC-ACCAGGTACC---A 895
consensus_14849#3 ------------------------------CCAACTTA-GTTGAT-CC----TACC---A 21
consensus_14849#1 CTGTTAAGCCATGCCGTCTTAGATCGTATGTCATGTCA-TTTGAT-TCAGAAACCCTACA 209
consensus_14849#2 GCCAAGGACAACGGCGGCGACAAGCCCGCGCCGTCGGACGGCGACATCGTGCTGTACAGG 95
** *
consensus_14849#0 TTTTGTGGCCAACTAGTTGATCCTACAAAGTTTCATCCCAGATAG---------TGGAGA 946
consensus_14849#3 AAGTGTGTCAATGCCCCAGGTTAGTGGGAGATTGAGTGGTGGTGA---------TNATGT 72
consensus_14849#1 AAGTTACGCAACAATCAGGTCCANGGAGGNATTTGGCATCNTCNAAAAACACACTGAGGN 269
consensus_14849#2 CGGATTGCTGAGGGTCAAGGAANAGGAGCGCAGAGGCTTGGANGAGATAC---TCTATGC 152
* * *
consensus_14849#0 TTAGT-GTGTATATTTGGTCCGAAGTGTATG--GGTTTCAATGAAGACTCTTTGCAAA-- 1001
consensus_14849#3 GTGGT-GCCCGAAGT-GGTAATGGGTGTGTG--CCAATGGAAGACTGCTTGTGGCCAA-- 126
consensus_14849#1 ACTAT-TTGGTNAACCANAAATTGTTATCNCACCTGAAGGGACAGTCNATTCTTCCAAGG 328
consensus_14849#2 ACTGTTGTNCGAAGTTTGTNGAAGCTGTGTT--CTNTGGTNNCAGCTCTTCCACTCTA-- 208
* * * * * *
consensus_14849#0 ACGAATTTCTCCTGGCTCTATGCAGATCGCAGAGATCTATGA------TTTTT-ACACAG 1054
consensus_14849#3 ACGAATTTCTCCTGGCTCTATGCAGATCGCAGAGATCTATGA------TTTNTTACCCCG 180
consensus_14849#1 ATGAACATGTNAGGATAANTTTCGCAGGGTTGANAANGNTGA------TCTTANAGGCTG 382
consensus_14849#2 -TCAGNNTCTCTGGAGAAGTGATCAGTGGGCAGAATCNGTGAAGGGAANNCTGAGAGATG 267
* * * * * * *** *
consensus_14849#0 TT-TTCGGGCATATAGCTTC-AATGTAAAATGGATATTTTTTTAGCCT-AATGTGCAGCT 1111
consensus_14849#3 TT-TTCGGGCATATAGCTTCCAATGTAAAATGGATATTTTTTTAGCCTGAATGTGCNGCT 239
consensus_14849#1 TTACTTTTGGATC---CNTCCNTTGGGATGTTGANANCTTTGTGGACACCANGTNCCATT 439
consensus_14849#2 CTTNACANGAGGCNATTGANTGATCGAAACNNNACTGCTTCATCAGAGGCANCGGCAGC- 326
* * * * * ** * * *
consensus_14849#0 GTTAGTTC--CTGG-TAACACTTGGGCTGCTT-GGGCC-TTGGGTGATGTATAATGT--- 1163
consensus_14849#3 GTTAGTTC--CTGGGTAACCCTTGGGCTGCTT-GGGCCCTTGGGTGATGTATAATGT--- 293
consensus_14849#1 TTGTGGCCAACTAGTTGATCCTACAAAGTTTC-NTCCCNNATAGTGGANATTAATGTG-- 496
consensus_14849#2 GTGATTNCA-CGAGACANNGNAGCGGCGAGTCAGGGGTCAAGCGTCTAGCCTGATGCCAC 385
* * * * * ** * ***
consensus_14849#0 TTTAT--GACTTGATG---TCTG-GAAATTGAATGAGGAATCCTAGCTAGCTCTAGTTCA 1217
consensus_14849#3 TTTAT--GACTTGATG---TCTG-GAAATTGAATGAGGAAAAA----------------- 330
consensus_14849#1 TNTATTTGGTCCNAAA---TGTNTGGGTTTCAATGAAAATCTTTGCAAACNAATTTCT-- 551
consensus_14849#2 TGTNNGCNGCCNTAANGTANNCCTCGNANTGGNTCAGGTTATTGCTNGCTCGTAATTTGG 445
* * * * * *
consensus_14849#0 AACTTTAAAAAAAAAATTTTGGCCCTTCATACTGCTTTCTTTTGTTCAATAACCCGTAAA 1277
consensus_14849#3 ------------------------------------------------------------
consensus_14849#1 ------------------------------------------------------------
consensus_14849#2 TACTCNTANG-------------------------------------------------- 455
consensus_14849#0 AATATGATAAAAAAAAAA 1295
consensus_14849#3 ------------------
consensus_14849#1 ------------------
consensus_14849#2 ------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||