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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14859#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1369 fasta sequence
[CCGCTNCGCTGCGACGCGCTGCCTCCCTCTACTGCTGCCGCCGACGAATCCCAGCG-GCGCCGCGACGCCGCCGGTGCGCCGCCGCAGTTAGCATGGCAGCGATGAACAATGATCTGGGAGGACTGGGAGGCAGACCTGCTACTTCACAAGCTAATCCTTTTGAAAGTGCTTTATATGGAGCTGGACCTGGACTCATCCGAAGTGGGTTAGGAGCATACGGCGAGAAGTTTTTAGGTTCAAGCTCTGAGTTTATGCAAAGCAATATCAC-TCAGTATCTGTCCAATCCT-CAGTACTACT-TTCAAGTCAACAGTCAGTATG-TGAGAAACAA-GTTGAAGGTGATC-TTGTT-CCCTTTCCTGCACCGGGGGCACTGGACAAGGATAACTGAACCGGTGGG-AGGAAGGTTGTCATACAAACCTCCAATT-CAAGATATCAATGCTCCAGATCTTTACATTCCTCTGATGGCTTTTGGGACGTATGTTGTAATTGCTGGATATGCTTTGGGTGTTCTTGGGAGGTTTACCCCAGAGGCACTCACTCTACAGTTCACAAAAGGATTACTTGGCTGGTTTCTGCAA-GTAATCCTGATCAGAGTTCTACTGTACACGCT-GGGAAGTGGTGAAGCGCCATTGCTGGACATTGTGGCCT-ATG-CTGGGTATGGA-TTTGCTGGTACATCACTTGCAATG-CTTGTCCGCGTCTTCTGGAGCCCGTCATATTATTTTGTACTGCCATGGTTCTCAATCTGCACCGGAGTTTTCCTTGTCAAGACGATGAAGAGGGTTCTTCTGGGCGCACCAAGGAGCTATGAGAGACACCCCAGCCGGAATCACTACTTTCTTCTTTTCCTCGCGGTTGTGCAATTTCCCATGCTCTTCTGGCTAGGCAACATCAGCGGGTGATATTTCAGCCTTATTTTAGAACTACATAACTCGATTTATTCGGTATTACTGGAATAGGTTTGAGATTTAGGCATATATGTCGTTCATATTCTTGTGGAAGTGGTAAATTGCTGGACAAGAAGTTGCATACCAAATGTCTGTCCTTCGCCCTTGTCTGTCCGGCATTAACTGAAGACCAATGGATACACGAATGTTCTTATCGTACATCATCGCTATTTTGCCTTCTGTATCTCATTTTTGTTACTTAGTCACCGCGATCGCCTTCAAGCTGTCTTACGACCTGAGACATGTCTGTATAAAATCAGATGATAATGTTCCTTGTCGTGCACTTCAATTGCTTCTGAAATGTGATTCTTCAGTGGACTGGGGATATGGGAGTACATAGGACCAAGAGAGTGTTGTGTAATTCCTTACAAACTCCGTCTGAAATTTTCCTACTTACAAGTCAATACATAATCTATAATTAGCAAAAA]
[+] EMBL AU032156 [CCGCTNCGCTGCGACGCGCTGCCTCCCTCTACTGCTGCCGCCGACGAATCCCAGCGAGCGCCGCGACGTCGACNNTGCGCCGCCGCAGTTAGCATGGCANCGATGAACAATGATCTNGNAGGACTGGGAGGCAGACCTGCTANTTCANAAGCTAATNCNNTTGAAAGTGCTTTATATGGAGCTGGACCTGGACTCATCCGAAGTGGGTTAGGAGCATACGCCGAGAAGTTTTTAGGNTCAAGCTCTGAGTTTATGCAAAGCAATATCAC TCAGTATCTGTCCAATCCT CAGTACTACTCAGNAAGTCAACAGTCAGTATG TGAGANACAAGGTTGAAGGTGATC TTGTTNCCCTTTCCTGCACCGNGGGC ]
[+] EMBL AK059836 [ ctCTTCGCTGCGACGCGCTGCCTCC CTACTGCTGCCGCCGACGAATCCCAGCG GCGCCGCGACGCCGCCGGTGCGCCGCCGCAGTTAGCATGGCAGCGATGAACAATGATCTGGGAGGACTGGGAGGCAGACCTGCTACTTCACAAGCTAATCCTTTTGAAAGTGCTTTATATGGAGCTGGACCTGGACTCATCCGAAGTGGGTTAGGAGCATACGGCGAGAAGTTTTTAGGTTCAAGCTCTGAGTTTATGCAAAGCAATATCAC TCAGTATCTGTCCAATCCT CAGTACTACT TTCAAGTCAACAGTCAGTATG TGAGAAACAA GTTGAAGGTGATC TTGTT CCCTTTCCTGCACCGGGGGCACTGGACAAGGATAACTGAACCGGTGGG AGGAAGGTTGTCATACAAACCTCCAATT CAAGATATCAATGCTCCAGATCTTTACATTCCTCTGATGGCTTTTGGGACGTATGTTGTAATTGCTGGATATGCTTTGGGTGTTCTTGGGAGGTTTACCCCAGAGGCACTCACTCTACAGTTCACAAAAGGATTACTTGGCTGGTTTCTGCAA GTAATCCTGATCAGAGTTCTACTGTACACGCT GGGAAGTGGTGAAGCGCCATTGCTGGACATTGTGGCCT ATG CTGGGTATGGA TTTGCTGGTACATCACTTGCAATG CTTGTCCGCGTCTTCTGGAGCCCGTCATATTATTTTGTACTGCCATGGTTCTCAATCTGCACCGGAGTTTTCCTTGTCAAGACGATGAAGAGGGTTCTTCTGGGCGCACCAAGGAGCTATGAGAGACACCCCAGCCGGAATCACTACTTTCTTCTTTTCCTCGCGGTTGTGCAATTTCCCATGCTCTTCTGGCTAGGCAACATCAGCGGGTGATATTTCAGCCTTATTTTAGAACTACATAACTCGATTTATTCGGTATTACTGGAATAGGTTTGAGATTTAGGCATATATGTCGTTCATATTCTTGTGGAAGTGGTAAATTGCTGGACAAGAAGTTGCATACCAAATGTCTGTCCTTCGCCCTTGTCTGTCCGGCATTAACTGAAGACCAATGGATACACGAATGTTCTTATCGTACATCATCGCTATTTTGCCTTCTGTATCTCATTTTTGTTACTTAGTCACCGCGATCGCCTTCAAGCTGTCTTACGACCTGAGACATGTCTGTATAAAATCAGATGATAATGTTC ]
[+] EMBL AK071563 [ CGCGCTGCCTCCCTCTACTGCTGCCGCCGACGAATCCCAGCG GCGCCGCGACGCCGCCGGTGCGCCGCCGCAGTTAGCATGGCAGCGATGAACAATGATCTGGGAGGACTGGGAGGCAGACCTGCTACTTCACAAGCTAATCCTTTTGAAAGTGCTTTATATGGAGCTGGACCTGGACTCATCCGAAGTGGGTTAGGAGCATACGGCGAGAAGTTTTTAGGTTCAAGCTCTGAGTTTATGCAAAGCAATATCAC TCAGTATCTGTCCAATCCT CAGTACTACT TTCAAGTCAACAGTCAGTATG TGAGAAACAA GTTGAAGGTGATC T TT CCCTTTCCTGCACCGGGGGCACTGGACAAGGATAACTGAACCGGTGGG AGGAAGGTTGTCATACAAACCTCCAATT CAAGATATCAATGCTCCAGATCTTTACATTCCTCTGATGGCTTTTGGGACGTATGTTGTAATTGCTGGATATGCTTTGGGTGTTCTTGGGAGGTTTACCCCAGAGGCACTCACTCTACAGTTCACAAAAGGATTACTTGGCTGGTTTCTGCAA GTAATCCTGATCAGAGTTCTACTGTACACGCT GGGAAGTGGTGAAGCGCCATTGCTGGACATTGTGGCCT ATG CTGGGTATGGA TTTGCTGGTACATCACTTGCAATG CTTGTCCGCGTCTTCTGGAGCCCGTCATATTATTTTGTACTGCCATGGTTCTCAATCTGCACCGGAGTTTTCCTTGTCAAGACGATGAAGAGGGTTCTTCTGGGCGCACCAAGGAGCTATGAGAGACACCCCAGCCGGAATCACTACTTCCTTCTTTTCCTCGCGGTTGTGCAATTTCCCATGCTCTTCTGGCTAGGCAACATCAGCGGGTGATATTTCAGCCTTATTTTAGAACTACATAACTCGATTTATTCGGTATTACTGGAATAGGTTTGAGATTTAGGCATATATGTCGTTCATATTCTTGTGGAAGTGGTAAATTGCTGGACAAGAAGTTGCATACCAAATGTCTGTCCTTCGCCCTTGTCTGTCCGGCATTAACTGAAGACCAATGGATACACGAATGTTCTTATCGTACATCATCGCTATTTTGCCTTCTGTATCTCATTTTTGTTACTTAGTCACCGCGATCGCCTTCAAGCTGTCTTACGACCTGAGACATGTCTGTATAAAATCAGATGATAATGTTCCTTGTCGTGCACTTCAATTGCTTCTGAAATGTGATTCTTCAGTGGACTGGGGATATGGGAGTACATAGGACCAAGAGAGTGTTGTGTAATTCCTTACAAACTCCGTCTGAAATTTTCCTACTTACAAGTCAATACATAATCT ]
[+] EMBL AU058369 [ TCCCTCTACTGCTGCCGCCGACGAATCCCAGCG GCGCCGCGACGCCGCCGGTGCGCCGCCGCAGTTAGCATGGCAGCGATGAACAATGATCTGGGAGGACTGGGAGGCAGACCTGCTACTTCACAAGCTAATCCTTTTGAAAGTGCTTTATATGGAGCTGGACCTGGACTCATCCGAAGTGGGTTAGGAGCATACGGCGAGAAGTTTTTAGGTTCAAGCTCTGAGTTTATGCAAAGCAATATCAC TCAGTATCTGTCCAATCCTCCAGTACTACT TTCAAGTCNACAGTCAGTATGTTGAGAAAC A GTTGAAGGTGATC TTG T NCCTTTCCTG ]
[+] EMBL C74533 [ CCCTCTACTGCTGCCGCCGACGAATCCCAGCG GCGCCGCGACGCCGNCGGTGCGCCGCCGC AGCATGGCAGCGATGAACAATGATCTGGGAGGACTGGGAGGCAGACCTGCTACTTCACAAGCTAATCCTTTTGAAAGTGCTTTATATGGAGCTGGACCTGGACTCATCCGAAGTGGGTTAGGAGCATACGGCGAGAAGTTTTTAGGTTCAAGCTCTGAGTTTATGCAAAGCAATATCACNNCAGTATCTGTCCAATCCT CAGTACTACT TTCAAGTCAACAGTCAGTATG TGAGAAACAA GTTGAAGGTGATCNTGGTT CCCT ]
[+] EMBL OSR26501A [ GCG GCGCCGCGACGCCGCCGGTGCGCCGCCGCAGTTAGCATGGCAGCGATGAACAATGATCTGGGAGGACTGGGAGGCAGACCTGCTACTTCACAAGCTAATCCTTTTGAAAGTGCTTTATATGGAGCTGGACCTGGACTCATCCGAAGTGGGTTAGGAGCATACGGCGAGAAGTTTTTAGGTTCAAGCTCTGAGTTTATGCAAAGCAATATCAC TCAGTATCTGTCCAATCCT CAGTACTACT TTCAAGTCAACAGTCAGTATG TGAGAAACAA GTTGAAGGTG ]
[+] EMBL AU030204 [ CGCGACGCCGNCGGTGCGCCGCCGCAGTTAGCATGGCAGCGATGAACAATGATCTGGGAGGACTGGGAGGCAGACCTGCTACTTCACAAGCTAATCCTTTTGAAAGTGCTTTATATGGAGCTGGACCTGGACTCATCCGAAGTGGGTTAGGAGCATACGGCGAGAAGTTTTTAGGTTCAAGCTCTGAGTTTATGCAAAGCAATATCAC TCAGTATCTGTCCAATCCT CAGTACTACT TTCAAGTCAACAGTCAGTATG TGAGAAACAA GTTGAAGGTGATC TTGTT CCCTTTCCTGCACCGGGGGCACTGGACAAGGATAACTGAACCGGTGGGAAGGAAGGTTGTCATACAAACCTCCNATTCCAAGATATCNATGCTCCAGATCTTTACATTCCNCTGATGGC ]
[+] EMBL C72784 [ CAGTACTACT TTCAAGTCAACAGTCAGTATG TGAGAAACAA GTTGAAGGTGATC TTGTT CCCTTTCCTGCACCGGGGGCACTGGACAAGGATAACTGAACCGGTGGG AGGAAGGTTGTCATACAAACNTCCAATT CAAGATATCAATGCTCCAGATCTTTACATTCCTCTGATGGCTTTTGGGACGTATGTTGTAATTGCTGGATATGCTTTGGGTGTTCTTGGGAGGTTTACCCCAGAGGCACTCACTCTACAGTTCACAAAAGGATTACTTGGCTGGTTTCTGCAANGNAGGCCTGATCAGAGTTCTACTGTACACGCTGGGGAAGTGGTGAAGCGCCATTGCTGGACATTGTGGCCTAATGCCNGGGTATGGATTTTCCTGG NCATCACTTGCAANGCCTTGTC ]
[+] EMBL AU094072 [ nCAGCGGGTGATATTTCAGCCTTATTTTAGAACTACATAACTCGATTTATTCGGTATTACTGGAATAGGTTTGAGATTTAGGCATATATGTCGTTCATATTCTTGTGGAAGTGGTAAATTGCTGGACAAGAAGTTGCATACCAAATGTCTGTCCTTCGCCCTTGTCTGTCCGGCATTAACTGAAGACCAATGGATACACGAATGTTCTTATCGTACATCATCGCTATTTTGCCTTCTGTATCTCATTTTTGTTACTTAGTCACCGCGATCGCCTTCAAGCTGTCTTACGACCTGAGACATGTCTGTATAAAATCAGATGATAATGTTCCTTGTCGTGCACTTCAATTGCTTCTGAAATGTGATTCTTCAGTGGACTGGGGATATGGGAGTACATAGGACCAAGAGAGTGTTGTGTAATTCCTTACAAACTCCGTCTGAAATTTTCCTACTTACAAGTCAATACATAATCTATAATTAGCAAAAA]
consensusID : consensus_14859#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 629 fasta sequence
[GGCCGGACGCGTGCNNTGTTCTTGGGAGGTTTACCCCAGAGNCACTCACTNTACAGTTCACAAAAGGATTACTTGGCTGGTTTCTGCAAGTAATCCTGATCAGAGTTCTACTGTACACGCTGGGAAGTGGTGAAGCGCCATTGCTGGACATTGTGGCCTATGCTGGGTATGGATTTGCTGGTACATCACTTGCAATGCTTGT-CCGCGTCTTCTGGAGCCCGTCATATTATTTTGTACTGCCAT-GGTTCTCAATCTGCA-CCGG-AGTTT-TCC-TTG-TCAAGACGA-TG-AAGA-GGGTT--CT-TCTGGG-CGCACCAAGGA-GCTA-TGAGAGACACCCCA-G-CCGGAATCACTACTTTCTTCTTTT-CCT-CGCGGTTGTGCAATTTCCCATGCTCTTCTGGCTAGGCAACATCAGCGGGTGATATTTCAGCCTTATTTTAGAACTACATAACTCGATTTATTCGGTATTACTGGAATAGGTTTGAGATTTAGGCATATATGTCGTTCATATT-CTTGTGGAAGTGGTAAATTGCTGGACAAGAAGTTGCATACCAAATGTCTGTCCTTCGCCCTTGTCTGTCCGGCATTAACTGAAGACCAATGGATACACGAATGTTCTTATCGTACATCAAAAAANNNAA]
[+] EMBL AU056670 [GGCCGGACGCGTGCNNTGTTCTTGGGAGGTTTACCCCAGAGNCACTCACTNTACAGTTCACAAAAGGATTACTTGGCTGGTTTCTGCAAGTAATCCTGATCAGAGTTCTACTGTACACGCTGGGAAGTGGTGAAGCGCCATTGCTGGACATTGTGGCCTATGCTGGGTATGGATTTGCTGGTACATCACTTGCAATGCTTGT CCGCGTCTTCTGGAGCCCGTCATATTATTTTGTACTGCCAT GGTTCTCAATCTGCA CCGG AGTTT TCC TTG TCAAGACGA TG AAGA GGGTT CT TCTGGG CGCACCAAGGA GCTA TGAGAGACACCCCA G CCGGAATCACTACTTTCTTCTTTT CCT CGCGGTTGTGCAATTTCCCATGCTCTTCTGGCTAGGCAACATCAGCGGGTGATATTTCAGCCTTATTTTAGAACTACATAACTCGATTTATTCGGTATTACTGGAATAGGTTTGAGATTTAGGCATATATGTCGTTCATATT CTTGTGGAAGTGGTAAATTGCTGGACAAGAAGTTGCATACCAAATGTCTGTCCTTCGCCCTTGTCTGTCCGGCATTAACTGAAGACCAATGGATACACGAATGTTCTTATCGTACATCAAAAAA ]
[+] EMBL AU032157 [ gnTATGGATTTGCTGGTACANCATTTGCAATGCTTGT CCGCNTCTTCTGGAGCCCGTCATATTATTTTGTACTGCCAT GGTTCTCAATCTGCA CCGG AGTTT TCC TTG TCAAGACGA TG AAGA GGGTT CT TCTGGG CGCACCAAGGA GCTA TGAGAGACACCCCA G CCGGAATCACTACTTTCTTCTTTT CCT CGCGGTTGTGCAATTTCCCATGCTCTTCTGGCTAGGCAACATCAGCGGGTGATATTTCAGCCTTATTTTAGAACTACATAACTCGATTTATTCGGTATTACTGGAATAGGTTTGAGATTTAGGCATATATGTCGTTCATATTGCTTGTGGAAGTGGTAAATTGCTGGACAAGAAGTTGCATACCAAATGTCTGTCCTTCGCCCTTGTCTGTCCGGCATTAACTGAAGACCAATGGATNCNCGAATGTTCTTNTNGTNNAAAAAAAAANNNAA]
[+] EMBL AU031913 [ GCAATGCTTGTCCCGCGTCTTCTGGAGCCCGTCATATTATTTTGTACTGCCATGGGTTCTCAATCTGCA CCGG AGTTT TCC TTG TCAAGACGA TG AAGA GGGTT CT TCTGGG CGCACCAAGGA GCTA TGAGAGACACCCCA G CCGGAATCACTACTTTCTTCTTTT CCT CGCGGTTGTGCAATTTCCCATGCTCTTCTGGCTAGGCAACATCAGCGGGTGATATTTCAGCCTTATTTTAGAACTACATAACTCGATTTATTCGGTATTACTGGAATAGGTTTGAGATTTAGGCATATATGTCGTTCATATT CTTGTGGAAGTGGTAAATTGCTGGACAAGAAGTTGCATACCAAATGTCTGTCCTTCGCCCTTGTCTGTCCGGCATTAACTGAAGACCAATGGATACACGAATGTTCTTATCGTACATCAAAAAAa ]
[+] EMBL AU095481 [ cnTCAATCTGCANCCGGAAGTTTCTCCTTTGTTCAAGACGATTGAAAGACGGGTTTCCTNACTGGGCCGCACCAAGGANGCTATTGAGAGACACCCCATGTCCGGAATCACTACTTTCCTCTTTTNCCTNCGCGGTTGTGCAATTTCCCATGCTCTTCTGGCTAGGCAACATCAGCGGGTGATATTTCAGCCTTATTTTAGAACTACATAACTCGATTTATTCGGTATTACTGGAATAGGTTTGAGATTTAGGCATATATGTCGTTCATATT CTTGTGGAAGTGGTAAATTGCTGGACAAGAAGTTGCATACCAAATGTCTGTCCTTCGCCCTTGTCTGTCCGGCATTAACTGAAGACCAATGGATACACGAATGTTCTTATCGTACATCAAAAA ]
[+] EMBL AU068383 [ AAGA GGGTT CT TCTGGG CGCACCAAGGA GCTA TGAGAGACACCCCA G CCGGAATCACTACTTTCTTCTTTT CCT CGCGGTTGTGCAATTTCCCATGCTCTTCTGGCTAGGCAACATCAGCGGGTGATATTTCAGCCTTATTTTAGAACTACATAACTCGATTTATTCGGTATTACTGGAATAGGTTTGAGATTTAGGCATATATGTCGTTCATATT CTTGTGGAAGTGGTAAATTGCTGGACAAGAAGTTGCATACCAAATGTCTGTCCTTCGCCCTTGTCTGTCCGGCATTAACTGAAGACCAATGGATACACGAATGTTCTTATCGTAAA AAAAA ]
[+] EMBL AU095026 [ TATTTTAGAACTACATAACTCGATTTATTCGGTATTACTGGAATAGGTTTGAGATTTAGGCATATATGTCGTTCATATT CTTGTGGAAGTGGTAAATTGCTGGACAAGAAGTTGCATACCAAATGTCTGTCCTTCGCCCTTGTCTGTCCGGCATTAACTGAAGACCAATGGATACACGAATGTTCTTATCaaaaa ]
consensusID : consensus_14859#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence
[NCCCCNNNCCNCNCNCNCNCCCCCNCNCCNNCCCCNCCCNCCTCNCCNNCCCGAATCCCAGCGGGCGCCGCGACGCGCGGTGCGCCGCCGCAGNTTAGCATGGCAGCGATGAACAATGATCTGGGAGGACTGGGAGGCAGACCTGCTACTTCACAAGCTAATCCTTTTGAAAGTGCTTTATATGGAGCTGGACCTGGACTCATCCGAAGTGGGTTAGGAGCATACGGCGAGAAGTTTTTAGGTTCAAGCTCTGAGTTTATGCAAAGCAATATCACTCAGTATCTGTCCAATCCTCAGTACTACTTTCAAGTCAACAGTCAGTATGTGAGAAACAAGTTGAAGGTGATCTTGTTCCCTTTCCTGCACCGGGGGCACTGGCCAAGGNTAACTG]
[+] EMBL OSR25491A [NCCCCNNNCCNCNCNCNCNCCCCCNCNCCNNCCCCNCCCNCCTCNCCNNCCCGAATCCCAGCGGGCGCCGCGACGCGCGGTGCGCCGCCGCAGNTTAGCATGGCAGCGATGAACAATGATCTGGGAGGACTGGGAGGCAGACCTGCTACTTCACAAGCTAATCCTTTTGAAAGTGCTTTATATGGAGCTGGACCTGGACTCATCCGAAGTGGGTTAGGAGCATACGGCGAGAAGTTTTTAGGTTCAAGCTCTGAGTTTATGCAAAGCAATATCACTCAGTATCTGTCCAATCCTCAGTACTACTTTCAAGTCAACAGTCAGTATGTGAGAAACAAGTTGAAGGTGATCTTGTTCCCTTTCCTGCACCGGGGGCACTGGCCAAGGNTAACTG]
consensusID : consensus_14859#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 374 fasta sequence
[CTTTNTCCCGCGTCTTNTGGAGCCCCTTCANATTATTTTGTTNCTGCCCATGGTTCTCAATCTGCCACCGGAGTTTTCCTTGTCAAGACGNTGAAAGAGGGTTCTTCTGGGCGCACCAAGGAGCTNTGAGAGACACCCCAGCCGGAATCACTACTTTCTTCTTTTCCTCGCGGTTGTGCAATTTCCCATGCTCTTCTGGCTAGGCAACATCAGCGGGTGATATTTCAGCCTTATTTTAGAACTACATAACTCGATTTATTCGGTATTACTGGAATAGGTTTGAGATTTAGGCATATATGTCGTTCATATTCTTGTGGAAGTGGTAAATTGCTGGACAAGAAGTTGNATNCCAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU030205 [CTTTNTCCCGCGTCTTNTGGAGCCCCTTCANATTATTTTGTTNCTGCCCATGGTTCTCAATCTGCCACCGGAGTTTTCCTTGTCAAGACGNTGAAAGAGGGTTCTTCTGGGCGCACCAAGGAGCTNTGAGAGACACCCCAGCCGGAATCACTACTTTCTTCTTTTCCTCGCGGTTGTGCAATTTCCCATGCTCTTCTGGCTAGGCAACATCAGCGGGTGATATTTCAGCCTTATTTTAGAACTACATAACTCGATTTATTCGGTATTACTGGAATAGGTTTGAGATTTAGGCATATATGTCGTTCATATTCTTGTGGAAGTGGTAAATTGCTGGACAAGAAGTTGNATNCCAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_14859#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 346 fasta sequence
[ACGAATCCCAGCGGCGCCGCGACGNCGCCGGTGCGCCGCCNCAGTTCGTTTTTNTTTATGCAGTTAGCATGGCAGCGATGAACAATGATCTGGGAGGNCTGGGAGGCAGACCTGCTACTTCACAAGCTAATCCTTTTGAAAGTNCTTTATATGGAGCTGGACCTGGACTCATCCGAAGTGGGTTAGGAGCATACGGCGAGAAGTTTTTAGGTTCAAGCTCTGAGTTTATGCAAAGCAATATCACTCAGTATCTGTCCAATCCTCAGTACTACTTTCAAAGTCAACAGTCAGTATGTNAGAAAACAAGTTGAAGGTGATCTTGTTCCCTTTTCCTGCACCGGGGGCA]
[+] EMBL AU108675 [ACGAATCCCAGCGGCGCCGCGACGNCGCCGGTGCGCCGCCNCAGTTCGTTTTTNTTTATGCAGTTAGCATGGCAGCGATGAACAATGATCTGGGAGGNCTGGGAGGCAGACCTGCTACTTCACAAGCTAATCCTTTTGAAAGTNCTTTATATGGAGCTGGACCTGGACTCATCCGAAGTGGGTTAGGAGCATACGGCGAGAAGTTTTTAGGTTCAAGCTCTGAGTTTATGCAAAGCAATATCACTCAGTATCTGTCCAATCCTCAGTACTACTTTCAAAGTCAACAGTCAGTATGTNAGAAAACAAGTTGAAGGTGATCTTGTTCCCTTTTCCTGCACCGGGGGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14859#1 ------------------------------------------------------------
consensus_14859#3 ------------------------------------------------------------
consensus_14859#0 CCGCTNCGCTGCGACGCGCTGCCTCCCTCTACTGCTGCCGCCGACGAATCCCAGCGGCGC 60
consensus_14859#2 ------------------------------------------------------------
consensus_14859#4 ------------------------------------------------------------
consensus_14859#1 ------------------------------------------------------------
consensus_14859#3 ------------------------------------------------------------
consensus_14859#0 CGCGACGCCGCCGGTGCGCCGCCGCAGTTAGCATGGCAGCGATGAACAATGATCTGGGAG 120
consensus_14859#2 ------------------------------------------------------------
consensus_14859#4 ------------------------------------------------------------
consensus_14859#1 ------------------------------------------------------------
consensus_14859#3 ------------------------------------------------------------
consensus_14859#0 GACTGGGAGGCAGACCTGCTACTTCACAAGCTAATCCTTTTGAAAGTGCTTTATATGGAG 180
consensus_14859#2 ------------------------------------------------------------
consensus_14859#4 ------------------------------------------------------------
consensus_14859#1 ------------------------------------------------------------
consensus_14859#3 ------------------------------------------------------------
consensus_14859#0 CTGGACCTGGACTCATCCGAAGTGGGTTAGGAGCATACGGCGAGAAGTTTTTAGGTTCAA 240
consensus_14859#2 ------------------------------------------------------------
consensus_14859#4 ------------------------------------------------------------
consensus_14859#1 ------------------------------------------------------------
consensus_14859#3 ------------------------------------------------------------
consensus_14859#0 GCTCTGAGTTTATGCAAAGCAATATCACTCAGTATCTGTCCAATCCTCAGTACTACTTTC 300
consensus_14859#2 ------------------------------------------------------------
consensus_14859#4 ------------------------------------------------------------
consensus_14859#1 ------------------------------------------------------------
consensus_14859#3 ------------------------------------------------------------
consensus_14859#0 AAGTCAACAGTCAGTATGTGAGAAACAAGTTGAAGGTGATCTTGTTCCCTTTCCTGCACC 360
consensus_14859#2 ------------------------------------------------------------
consensus_14859#4 ------------------------------------------------------------
consensus_14859#1 ------------------------------------------------------------
consensus_14859#3 ------------------------------------------------------------
consensus_14859#0 GGGGGCACTGGACAAGGATAACTGAACCGGTGGGAGGAAGGTTGTCATACAAACCTCCAA 420
consensus_14859#2 ------------------------------------------------------------
consensus_14859#4 ------------------------------------------------------------
consensus_14859#1 ------------------------------------------------------------
consensus_14859#3 ------------------------------------------------------------
consensus_14859#0 TTCAAGATATCAATGCTCCAGATCTTTACATTCCTCTGATGGCTTTTGGGACGTATGTTG 480
consensus_14859#2 ------------------------------------------------------------
consensus_14859#4 ------------------------------------------------------------
consensus_14859#1 ------GGCCGGACGCGTGCNNTGTTCTTGGGAGGTTTACCCCAGAGNCACTCACTNTAC 54
consensus_14859#3 ------------------------------------------------------------
consensus_14859#0 TAATTGCTGGATATGCTTTGGGTGTTCTTGGGAGGTTTACCCCAGAGGCACTCACTCTAC 540
consensus_14859#2 ------------------------------------------------------------
consensus_14859#4 ------------------------------------------------------------
consensus_14859#1 AGTTCACAAAAGGATTACTTGGCTGGTTTCTGCAAGTAATCCTGATCAGAGTTCTACTGT 114
consensus_14859#3 ------------------------------------------------------------
consensus_14859#0 AGTTCACAAAAGGATTACTTGGCTGGTTTCTGCAAGTAATCCTGATCAGAGTTCTACTGT 600
consensus_14859#2 ------------------------------------------------------------
consensus_14859#4 ------------------------------------------------------------
consensus_14859#1 ACACGCTGGGAAGTGGTGAAGCGCCATTGCTGGACATTGTGGCCTATGCTGGGTATGGAT 174
consensus_14859#3 ------------------------------------------------------------
consensus_14859#0 ACACGCTGGGAAGTGGTGAAGCGCCATTGCTGGACATTGTGGCCTATGCTGGGTATGGAT 660
consensus_14859#2 ------------------------------------------------------------
consensus_14859#4 ------------------------------------------------------------
consensus_14859#1 TTGCTGGTACATCACTTGCAATGCTTGTCCGCGTCTTCTGGAGCCCGT-CATATTATTTT 233
consensus_14859#3 ---------------------CTTTNTCCCGCGTCTTNTGGAGCCCCTTCANATTATTTT 39
consensus_14859#0 TTGCTGGTACATCACTTGCAATGCTTGTCCGCGTCTTCTGGAGCCCGT-CATATTATTTT 719
consensus_14859#2 NCCCCNNNCCNCNCNCNCNCCCCCNCNCCNNCCCCNCCCNCCTCNCCNNCCCGAATCCCA 60
consensus_14859#4 --------------------------ACGAATCCCAGCGGCGCCGCGACGNCG----CCG 30
* * *
consensus_14859#1 GT--ACTGCC-ATGGTTCTCAATCTGC-ACCGGAGTTTTCCTTGTCAAGACGATGAA-GA 288
consensus_14859#3 GTT-NCTGCCCATGGTTCTCAATCTGCCACCGGAGTTTTCCTTGTCAAGACGNTGAAAGA 98
consensus_14859#0 GT--ACTGCC-ATGGTTCTCAATCTGC-ACCGGAGTTTTCCTTGTCAAGACGATGAA-GA 774
consensus_14859#2 GCGGGC-GCC-GCGACGCGCGGTGCGCCGCCGCAGNTTAGCATGGCAG--CGATGAACAA 116
consensus_14859#4 GTGCGCCGCC-NCAGTTCGTTTT-TNTTTATGCAGTT-AGCATGGCAG--CGATGAACAA 85
* * *** * * * ** * * ** ** ** **** *
consensus_14859#1 GGGTTCTTCTGGGCGCACCAAGGAGCT-ATGAGAGACACCCCAGCCGGAATCACTACTTT 347
consensus_14859#3 GGGTTCTTCTGGGCGCACCAAGGAGCT-NTGAGAGACACCCCAGCCGGAATCACTACTTT 157
consensus_14859#0 GGGTTCTTCTGGGCGCACCAAGGAGCT-ATGAGAGACACCCCAGCCGGAATCACTACTTT 833
consensus_14859#2 TGAT----CTGGGAGGACTGGGAGGCAGACCTGCTACTTCACAAGCT-AATCCTTTTGAA 171
consensus_14859#4 TGAT----CTGGGAGGNCTGGGAGGCAGACCTGCTACTTCACAAGCT-AATCCTTTTGAA 140
* * ***** * * * ** * ** * ** * **** *
consensus_14859#1 CTTCTTTTCCTCGCGGTTGTGCAATTTCCCATGCTCTTCTGGCTAGGCAACAT-CAGCGG 406
consensus_14859#3 CTTCTTTTCCTCGCGGTTGTGCAATTTCCCATGCTCTTCTGGCTAGGCAACAT-CAGCGG 216
consensus_14859#0 CTTCTTTTCCTCGCGGTTGTGCAATTTCCCATGCTCTTCTGGCTAGGCAACAT-CAGCGG 892
consensus_14859#2 AGTGCTTTATATGGAGCTGGACCTGGACTCATCCGAAGTGGGTTAGG-AGCATACGGCGA 230
consensus_14859#4 AGTNCTTTATATGGAGCTGGACCTGGACTCATCCGAAGTGGGTTAGG-AGCATACGGCGA 199
* *** * * ** * * *** * ** **** * *** * ***
consensus_14859#1 GTGATATTTCAGCCTTATTTTAGAACT-ACATAACTCGAT-TTATTCGGTATTACTGGAA 464
consensus_14859#3 GTGATATTTCAGCCTTATTTTAGAACT-ACATAACTCGAT-TTATTCGGTATTACTGGAA 274
consensus_14859#0 GTGATATTTCAGCCTTATTTTAGAACT-ACATAACTCGAT-TTATTCGGTATTACTGGAA 950
consensus_14859#2 GAAGTTTTTAGGTTCAAGCTCTGAGTTTATGCAAAGCAATATCACTCAGTATCTGTCCAA 290
consensus_14859#4 GAAGTTTTTAGGTTCAAGCTCTGAGTTTATGCAAAGCAATATCACTCAGTATCTGTCCAA 259
* * *** * * * ** * * ** * ** * * ** **** * **
consensus_14859#1 TAGGTTTGAGATTTAGGCATATATGTCGTTCATATTCTTGTGGAAGTGGTAAATTGCTGG 524
consensus_14859#3 TAGGTTTGAGATTTAGGCATATATGTCGTTCATATTCTTGTGGAAGTGGTAAATTGCTGG 334
consensus_14859#0 TAGGTTTGAGATTTAGGCATATATGTCGTTCATATTCTTGTGGAAGTGGTAAATTGCTGG 1010
consensus_14859#2 T---CCTCAGTACTACTTTCA-A-GTCAACAGTCAGTATGTGAGAA-A-CAAGTTGAAGG 343
consensus_14859#4 T---CCTCAGTACTACTTTCA-AAGTCAACAGTCAGTATGTNAGAA-AACAAGTTGAAGG 314
* * ** ** * * *** * *** * ** *** **
consensus_14859#1 ACAAGAAGTTGCATAC--CAAATGTCTGTCCTTCGCCCTTGTCTGTCCGGCATTAACTGA 582
consensus_14859#3 ACAAGAAGTTGNATNC--CAAAAAAAAAAAAAAAAAAAAAAA------------------ 374
consensus_14859#0 ACAAGAAGTTGCATAC--CAAATGTCTGTCCTTCGCCCTTGTCTGTCCGGCATTAACTGA 1068
consensus_14859#2 TGATCTTGTTCCCTTT-CCTGCACCGGGGGCACTGGCCAAGGNTAACTG----------- 391
consensus_14859#4 TGATCTTGTTCCCTTTTCCTGCACCGGGGGCA---------------------------- 346
* *** * *
consensus_14859#1 AGACCAATGGATACACGAATGTTCTTATCGTACATCAAAAAANNNAA------------- 629
consensus_14859#3 ------------------------------------------------------------
consensus_14859#0 AGACCAATGGATACACGAATGTTCTTATCGTACATCATCGCTATTTTGCCTTCTGTATCT 1128
consensus_14859#2 ------------------------------------------------------------
consensus_14859#4 ------------------------------------------------------------
consensus_14859#1 ------------------------------------------------------------
consensus_14859#3 ------------------------------------------------------------
consensus_14859#0 CATTTTTGTTACTTAGTCACCGCGATCGCCTTCAAGCTGTCTTACGACCTGAGACATGTC 1188
consensus_14859#2 ------------------------------------------------------------
consensus_14859#4 ------------------------------------------------------------
consensus_14859#1 ------------------------------------------------------------
consensus_14859#3 ------------------------------------------------------------
consensus_14859#0 TGTATAAAATCAGATGATAATGTTCCTTGTCGTGCACTTCAATTGCTTCTGAAATGTGAT 1248
consensus_14859#2 ------------------------------------------------------------
consensus_14859#4 ------------------------------------------------------------
consensus_14859#1 ------------------------------------------------------------
consensus_14859#3 ------------------------------------------------------------
consensus_14859#0 TCTTCAGTGGACTGGGGATATGGGAGTACATAGGACCAAGAGAGTGTTGTGTAATTCCTT 1308
consensus_14859#2 ------------------------------------------------------------
consensus_14859#4 ------------------------------------------------------------
consensus_14859#1 ------------------------------------------------------------
consensus_14859#3 ------------------------------------------------------------
consensus_14859#0 ACAAACTCCGTCTGAAATTTTCCTACTTACAAGTCAATACATAATCTATAATTAGCAAAA 1368
consensus_14859#2 ------------------------------------------------------------
consensus_14859#4 ------------------------------------------------------------
consensus_14859#1 -
consensus_14859#3 -
consensus_14859#0 A 1369
consensus_14859#2 -
consensus_14859#4 -
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||