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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15054#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1544 fasta sequence
[TTGTTATCCACATTTGCGGGGCGCAGCAGCAAAAGCACAAGGGCAAAGCCTCGCCGCCGTCGCCGCCGCCGCCGCCGCCGCCGCCGCGGCGA-T-CGCCACGCCATGTCTCCCTCCCTCTTGCTTACCTCTAGGGGTACCCACTCGCCGGCGCCACGGCCGCAAACCCGTCGAGCATCACAACTGCTCGTCTCTTTCCCCTCGCGCTGCAGCCGCTTCGTCGGCCTCCGCCTCGCGCGCGCAGCCGCCG-ATTCGCAGGGGCCCAACGGCGCTGCCCCTGGATCTGGATCTGGTGGGGACGGAGAGGGCAAGGCAGCCAATGGTGCCGACACCAAATTGCCAAAGAACCGGAGGGACATACTCCTGGAATACGTTAAAAATGTCCAGCCAGAGTTTATGGAGCTCTTCATAAAAAGAGCTCCGCCACAGGTTGTTGATGCCATGCGCCAAACGGTGACTAATAT-GATTGGGACTCTGCCACCTCAATTTTTCGCTGTAACTGTGACAACGGTTGCTGAAAATCTAGCTCAGCTTATGTACAGTGTTCTGATGACCGGATACATGTTCAGGAATGCGCAGTATCGTCTGGAATTGCAACAGAGTTTGGAGCAGATTGCCCTTCCAGAACCAAAAGAAGAAAATGATTCTGCAGATTATGCTCCTGGAACCCAGAAAAAGGTTACT-GGAGAAGTTATCCGATGGAACAAGACTACTGGTCCTGAGAAAATTGATGCAGTAAAATATATAGAATTGCTTGAAGCAGAAATTGATGAACTCAGCCATCAAGTTGCTAGAAAATCATCTCAAGGAAGTAATGAACTCTTGGAATATCTAAAAACTCTAGAACCTCAAAATCTGAAGGAGCTGGCAAGTAGTGCCGGCGAGGATGTCGTTTTTGCTATGAATGCATTCATAAAGCGCCTTTTGGCTGTCTCAGATCCTGCACAGATGAAGACAACAGTTTCAGAAACAAGTGCTAATCAGCTAGCCAACTTGATGTTTTGGTTGATGATTGTTGGCTACAGCATGCGCAATATTGAAGTGCGGTTTGACATGGAAAGAGTATTGGGTGCTGCCCCAAAGATAGGGGAATTACCACCTGGAGAAAACATATAGCAGGGAGGAAAGGGGC-GTAAGAGTGGGGAAGTGATGATTAGTTAAAATCTAGGGTTACTGGCCGGCCAAGATAACTGTATTTGCGTGGTCATATTATTTTGAGTGGAATGGATTACAGCATTTGTGCAAAGACA-CCAATCCACATTTTGGGAACTAAGATGAGATGCTAGGCATAGCCATTTCTGATATATTTCTCGGGGAGGTATAGACGACGAGATACATAGAAACAATAGAACGGGACCTGATGCTGTAGTTTTGCAA-CCTGACTATTGTTGGTAAAAT-ACAAT-CAAGGCAACT-CATATT-ACCATATTGTACT-CCCATGTTGTATG-TCTAGTT-CA-CCAATC--AAGTTGAG-TCTGATGTGAGTTTGTTTAAAAAAAAAACTAATTTTGCTACAAGACACATAAGTTTGTGTAATTTGATAGCGTACATCG]
[+] EMBL AK073112 [TTGTTATCCACATTTGCGGGGCGCAGCAGCAAAAGCACAAGGGCAAAGCCTCGCCGCCGTCGCCGCCGCCGCCGCCGCCGCCGCCGCGGCGA T CGCCACGCCATGTCTCCCTCCCTCTTGCTTACCTCTAGGGGTACCCACTCGCCGGCGCCACGGCCGCAAACCCGTCGAGCATCACAACTGCTCGTCTCTTTCCCCTCGCGCTGCAGCCGCTTCGTCGGCCTCCGCCTCGCGCGCGCAGCCGCCG ATTCGCAGGGGCCCAACGGCGCTGCCCCTGGATCTGGATCTGGTGGGGACGGAGAGGGCAAGGCAGCCAATGGTGCCGACACCAAATTGCCAAAGAACCGGAGGGACATACTCCTGGAATACGTTAAAAATGTCCAGCCAGAGTTTATGGAGCTCTTCATAAAAAGAGCTCCGCCACAGGTTGTTGATGCCATGCGCCAAACGGTGACTAATAT GATTGGGACTCTGCCACCTCAATTTTTCGCTGTAACTGTGACAACGGTTGCTGAAAATCTAGCTCAGCTTATGTACAGTGTTCTGATGACCGGATACATGTTCAGGAATGCGCAGTATCGTCTGGAATTGCAACAGAGTTTGGAGCAGATTGCCCTTCCAGAACCAAAAGAAGAAAATGATTCTGCAGATTATGCTCCTGGAACCCAGAAAAAGGTTACT GGAGAAGTTATCCGATGGAACAAGACTACTGGTCCTGAGAAAATTGATGCAGTAAAATATATAGAATTGCTTGAAGCAGAAATTGATGAGCTCAGCCATCAAGTTGCTAGAAAATCATCTCAAGGAAGTAATGAACTCTTGGAATATCTAAAAACTCTAGAACCTCAAAATCTGAAGGAGCTGGCAAGTAGTGCCGGCGAGGATGTCGTTTTTGCTATGAATGCATTCATAAAGCGCCTTTTGGCTGTCTCAGATCCTGCACAGATGAAGACAACAGTTTCAGAAACAAGTGCTAATCAGCTAGCCAACTTGATGTTTTGGTTGATGATTGTTGGCTACAGCATGCGCAATATTGAAGTGCGGTTTGACATGGAAAGAGTATTGGGTGCTGCCCCAAAGATAGGGGAATTACCACCTGGAGAAAACATATAGCAGGGAGGAAAGGGGC GTAAGAGTGGGGAAGTGATGATTAGTTAAAATCTAGGGTTACTGGCCGGCCAAGATAACTGTATTTGCGTGGTCATATTATTTTGAGTGGAATGGATTACAGCATTTGTGCAAAGACA CCAATCCACATTTTGGGAACTAAGATGAGATGCTAGGCATAGCCATTTCTGATATATTTCTCGGGGAGGTATAGACGACGAGATACATAGAAACAATAGAACGGGACCTGATGCTGTAGTTTTGCAA CCTGACTATTGTTGGTAAAAT ACAAT CAAGGCAAC ]
[+] EMBL CB625776 [ GCGGGGCGCAGCAGCAAAAGCACAAGGGCAAAGCCTCGCCGCCGT CGCCGCCGCCGCCGCCGCCGCGGCGA T CGCCACGCCATGTCTCCCTCCCTCTTGCTTACCTCTAGGGGTACCCACTCGCCGGCGCCACGGCCGCAAACCCGTCGAGCATCACAACTGCTCGTCTCTTTCCCCTCGCGCCGCAGCCGCTTCGTCGGCCTCCGCCTCGCGCGCGCAGCCGCCG ATTCGCAGGGGCCCAACGGCGCTGCCCCTGGATCTGGATCTGGTGGGGACGGAGAGGGCAAGGCAGCCAATGGTGCCGACACCAAATTGCCAAAGAACCGGAGGGACATACTCCTGGAATACGTTAAAAATGTCCAGCCAGAGTTTATGGAGCTCTTCATAAAAAGAGCTCCGCCACAGGTTGTTGATGCCATGCGCCAAACGGTGACTAATAT GATTGGGACTCTGCCACCTCAATTTTTCGCTGTAACTGTGACAACGGTTGCTGAAAATCTAGCTCAGCTTATGTACAGTGTTCTGATGACCGGATACATGTTCAGGAATGCGCAGTATCGTCTGGAATTGCAACAGAGTTTGGAGCAGATTGCCCTTCCAGAACCAAAAGAAGAAAATGATTCTGCAGATTATGCTCCTGGAACCCAGAAAAAGGTTACT GGAGAAGTTATCCGATGGAACAAGACTACTGGTCCTGAGAAAATTGATGCAGTAAAATATATAGAATTGCTTGAAGCAGAAATTGATGAACTCAGCCATCAAGTTGCTAGAAAATCATCTCAAGGAAGTAATGAACTCTT ]
[+] EMBL CB677755 [ CGCCGACGCCGCCGCCGCCGCCGCCGCCGCCGCGGCGA T CGCCACGCCATGGCTCCCTCCCTCTTGCTTACCTCTAGGGGTACCCACTCGCCGGCGCCACGGCCGCAAACCCGTCGAGCATCACAACTGCTCGTCTCTTTCCCCTCGCGCTGCAGCCGCTTCGTCGGCCTCCGCCTCGCGCGCGCAGCCGCCG ATTCGCAGGGGCCCAACGGCGCTGCCCCTGGATCTGGATCTGGTGGGGACGGAGAGGGCAAGGCAGCCAATGGTGCCGACACCAAATTGCCAAAGAACCGGAGGGACATACTCCTGGAATACGTTAAAAATGTCCAGCCAGAGTTTATGGAGCTCTTCATAAAAAGAGCTCCGCCACAGGTTGTTGATGCCATGCGCCAAACGGTGACTAATAT GATTGGGACTCTGCCACCTCAATTTTTCGCTGTAACTGTGACAACGGTTGCTGAAAATCTAGCTCAGCTTATGTACAGTGTTCTGATGACCGGATACATGTTCAGGAATGCGCAGTATCGTCTGGAATTGCAACAGAGTTTGGAGCAGATTGCCCTTCCAGAACCAAAAGAAGAAAATGATTCTGCAGATTATGCTCCTGGAACCCAGAAAAAGGTTACTGGGAGAA ]
[+] EMBL AU173460 [ GCCGTCGCCGCCGCCGCCGCCGCCGCCGCCGCGGCGA T CGCCACGCCATGTCTCCCTCCCTCTTGCTTACCTCTAGGGGTACCCACTCGCCGGCGCCACGGCCGCAAACCCGTCGAGCATCACAACTGCTCGTCTCTTTCCCCTCGCGCTGCAGCCGCTTCGTCGGCCTCCGCCTCGCGCGCGCAGCCGCCG ATTCGCAGGGGCCCAACGGCGCTGCCCCTGGATCTGGATCTGGTGGGGACGGAGAGGGCAAGGCAGCCAATGGTGCCGACACCAAATTGCCAAAGAACCGGAGGGACATACTCCTGGAATACGTTAAAAATGTCCAGCCAGAGTTTATGGAGCTNTTCATAAAAAGAGCTCCGNCACAGGTTGCTGATGCCATGCGCCAAACGGTGACTAATATNGATTGGGACTCTGCCACCTCAATTTTTNGCTGTAA ]
[+] EMBL OSR29131A [ GCCGTCGCCGCCGCCGCCGCCGCCGCCGCCGCG GA T CGCCACGCCATGTCTCCCTCCCTCTTGCTTACCTCTAGGGGTACCCACTCGCCGGCGCCACGGCCGCAAACCCGTCGAGCATCACAACTGCTCGTCTCTTTCCCCTCGCGCTGCAGCCGCTTCGTCGGCCTCCGCCTCGCGCGCGCAG CGCCGAATTCGCAGGGGCCCAACGGCGCTGCCCCTGGATCTGGATCTGGTGGGGACGG ]
[+] EMBL OSR27951A [ GCCGTCGCCGCCGCCGCCGCCGCCGCCGCCGCGG GANTACGCCACGCCATGTCTCCCTCCCTCTTGCTTACCTCTAGGGGTACCCACTCGCCGNCGNCACGGCCGCAAACCCGTCGAGCATCACAACTGCTCGTCTNTTTCCCCTCGAGCTGCANCCGNTTCGTCGGCCTCCNCCTCGNGCGCa ]
[+] EMBL CB652773 [ GCCGCCGCCGCCGCGGCGA T CGCCACGCCATGTCTCCCTCCCTCTTGCTTACCTCTAGGGGTACCCACTCGCCGGCGCCACGGCCGCAAACCCGTCGAGCATCACAACTGCTCGTCTCTTTCCCCTCGCGCTGCAGCCGCTTCGTCGGCCTCCGCCTCGCGCGCGCAGCCGCCG ATTCGCAGGGGCCCAACGGCGCTGCCCCTGGATCTGGATCTGGTGGGGACGGAGAGGGCAAGGCAGCCAATGGTGCCGACACCAAATTGCCAAAGAACCGGAGGGACATACTCCTGGAATACGTTAAAAATGTCCAGCCAGAGTTTATGGAGCTCTTCATAAAAAGAGCTCCGCCACAGGTTGTTGATGCCATGCGCCAAACGGTGACTAATAT GATTGGGACTCTGCCACCTCAATTTTTCGCTGTAACTGTGACAACGGTTGCTGAAAATCTAGCTCAGCTTATGTACAGTGTTCTGATGACCGGATACATGTTCAGGAATGCGCAGTATCGTCTGGAATTGCAACAGAGTTTGGAGCAGATTGCCCTTCCAGAACCAAAAGAAGAAAATGATTCTGCAGATTATGCTCCTGGAACCCAGAAAAAGGTTACT GGAGAAGTTATCCGATGGAACAAGACTACTGGTCCTGAGAAAATTGATGCAGTAAAATATATAGAATTGCTTGAAGCAGAAATTGATGAACTCAGCCATCCAGTTGCTAGA ]
[+] EMBL CB652805 [ GCCGCCCCTGCAGCGGCGA T CGCCACGCCATGTCTCCCTCCCTCTTGCTTACCTCTAGGGGTACCCACTCGCCGGCGCCACGGCCGCAAACCCGTCGAGCATCACAACTGCTCGTCTCTTTCCCCTCGCGCTGCAGCCGCTTCGTCGGCCTCCGCCTCGCGCGCGCAGCCGCCG ATTCGCAGGGGCCCAACGGCGCTGCCCCTGGATCTGGATCTGGTGGGGACGGAGAGGGCAAGGCAGCCAATGGTGCCGACACCAAATTGCCAAAGAACCGGAGGGACATACTCCTGGAATACGTTAAAAATGTCCAGCCAGAGTTTATGGAGCTCTTCATAAAAAGAGCTCCGCCACAGGTTGTTGATGCCATGCGCCAAACGGTGACTAATAT GATTGGGACTCTGCCACCTCAATTTTTCGCTGTAACTGTGACAACGGTTGCTGAAAATCTAGCTCAGCTTATGTACAGTGTTCTGATGACCGGATACATGTTCAGGAATGCGCAGTATCGTCTGGAATTGCAACAGAGTTTGGAGCAGATTGCCCTTCCAGAACCAAAAGAAGAAAATGATTCTGCAGATTATGCTCCTGGAACCCAGAAAAAGGTTACT GGAGAAGTTATCCGATGGAACAAGACTACTGGTCCTGAGAAAATTGATGCAGTAAAATATATAGAATTGCTTGAAGCAGAAATTGATGAACTCAGCCATCAAGTTGCTAGAAAATCATCTCAAGGAAGTAATGAACTCTTGGAATATC ]
[+] EMBL AK063696 [ CCATGTCTCCCTCCCTCTTGCTTACCTCTAGGGGTACCCACTCGCCGGCGCCACGGCCGCAAACCCGTCGAGCATCACAACTGCTCGTCTCTTTCCCCTCGCGCTGCAGCCGCTTCGTCGGCCTCCGCCTCGCGCGCGCAGCCGCCG ATTCGCAGGGGCCCAACGGCGCTGCCCCTGGATCTGGATCTGGTGGGGACGGAGAGGGCAAGGCAGCCAATGGTGCCGACACCAAATTGCCAAAGAACCGGAGGGACATACTCCTGGAATACGTTAAAAATGTCCAGCCAGAGTTTATGGAGCTCTTCATAAAAAGAGCTCCGCCACAGGTTGTTGATGCCATGCGCCAAACGGTGACTAATAT GATTGGGACTCTGCCACCTCAATTTTTCGCTGTAACTGTGACAACGGTTGCTGAAAATCTAGCTCAGCTTATGTACAGTGTTCTGATGACCGGATACATGTTCAGGAATGCGCAGTATCGTCTGGAATTGCAACAGAGTTTGGAGCAGATTGCCC ]
[-] EMBL CB625777 [ ATGATTCTGCAGATTATGCTCCTGGAACCCAGAAAAAGGTTACT GGAGAAGTTATCCGATGGAACAAGACTACTGGTCCTGAGAAAATTGATGCAGTAAAATATATAGAATTGCTTGAAGCAGAAATTGATGAACTCAGCCATCAAGTTGCTAGAAAATCATCTCAAGGAAGTAATGAACTCTTGGAATATCTAAAAACTCTAGAACCTCAAAATCTGAAGGAGCTGGCAAGTAGTGCCGGCGAGGATGTCGTTTTTGCTATGAATGCATTCATAAAGCGCCTTTTGGCTGTCTCAGATCCTGCACAGATGAAGACAACAGTTTCAGAAACAAGTGCTAATCAGCTAGCCAACTTGATGTTTTGGTTGATGATTGTTGGCTACAGCATGCGCAATATTGAAGTACGGTTTGACATGGAAAGAGTATTGGGTGCTGCCCCAAAGATAGGGGAATTACCACCTGGAGAAAACATATAGCAGGGAGGAAAGGGGCTGTAAGAGTGGGGAAGTGATGATTAGTCAAAATCTAGGGTTACTGGCCGGCCAAGATAACTGTATTTGCGTGGTCATATTATTTTGAGTGGAATGGATTACAGCATTTGTGCAAAGACA CCAATCCACATTTTGGGAACTAAGATGAGATGCTAGGCATAGCCATTTCTGATATATTTCTCGGGGAGGTATAGACGACGAGATACATAGAAACAATAGAACGGGACCTGATGCTGTAGTTTTGCAA CCTGACTATTGTTGGTAAAAT ACAAT CAAGGCAACT CATATT ACCAaaaaaaaga ]
[-] EMBL CB634079 [ TCTGCAGATTATGCTCCTGGAACCCAGAAAAAGGTTACT GGAGAAGTTATCCGATGGAACAAGACTACTGGTCCTGAGAAAATTGATGCAGTAAAATATATAGAATTGCTTGAAGCAGAAATTGATGAACTCAGCCATCAAGTTGCTAGAAAATCATCTCAAGGAAGTAATGAACTCTTGGAATATCTAAAAACTCTAGAACCTCAAAATCTGAAGGAGCTGGCAAGTAGTGCCGGCGAGGATGTCGTTTTTGCTATGAATGCATTCATAAAGCGCCTTTTGGCTGTCTCAGATCCTGCACAGATGAAGACAACAGTTTCAGAAACAAGTGCTAATCAGCTAGCCAACTTGATGTTTTGGTTGATGATTGTTGGCTACAGCATGCGCAATATTGAAGTACGGTTTGACATGGAAAGAGTATTGGGTGCTGCCCCAAAGATAGGGGAATTACCACCTGGAGAAAACATATAGCAGGGAGGAAAGGGGCTGTAAGAGTGGGGAAGTGATGATTAGTCAAAATCTAGGGTTACTGGCCGGCCAAGATAACTGTATTTGCGTGGTCATATTATTTTGAGTGGAATGGATTACAGCATTTGTGCAAAGACA CCAATCCACATTTTGGGAACTAAGATGAGATGCTAGGCATAGCCATTTCTGATATATTTCTCGGGGAGGTATAGACGACGAGATACATAGAAACAATAGAACGGGACCTGATGCTGTAGTTTTGCAA CCTGACTATTGTTGGTAAAAT ACAAT CAAGGCAACT CATATT ACCATATTGTACT CCCATGTTGTATG TCTAGT ]
[-] EMBL CB634113 [ GTTACT GGAGAAGTTATCCGATGGAACAAGACTACTGGTCCTGAGAAAATTGATGCAGTAAAATATATAGAATTGCTTGAAGCAGAAATTGATGAACTCAGCCATCAAGTTGCTAGAAAATCATCTCAAGGAAGTAATGAACTCTTGGAATATCTAAAAACTCTAGAACCTCAAAATCTGAAGGAGCTGGCAAGTAGTGCCGGCGAGGATGTCGTTTTTGCTATGAATGCATTCATAAAGCGCCTTTTGGCTGTCTCAGATCCTGCACAGATGAAGACAACAGTTTCAGAAACAAGTGCTAATCAGCTAGCCAACTTGATGTTTTGGTTGATGATTGTTGGCTACAGCATGCGCAATATTGAAGTACGGTTTGACATGGAAAGAGTATTGGGTGCTGCCCCAAAGATAGGGGAATTACCCCCTGGAGAAAACATATAGCAGGGAGGAAAGGGGCTGTAAGAGTGGGGAAGTGATGATTAGTCAAAATCTAGGGTTACTGGCCGGCCAAGATAACTGTATTTGCGTGGTCATATTATTTTGAGTGGAATGGATTACAGCATTTGTGCAAAGACA CCAATCCACATTTTGGGAACTAAGATGAGATGCTAGGCATAGCCATTTCTGATATATTTCTCGGGGAGGTATAGACGACGAGATACATAGAAACAATAGAACGGGACCTGATGCTGTAGTTTTGCAA CCTGACTATTGTTGGTAAAAT ACAAT CAAGGCAACT CATATT ACCATATGGTACT CCCATGTTGTATG TCTAGTT CA CCAAT ]
[-] EMBL CB677756 [ GAACCTCAAAATCTGAAGGAGCTGGCAAGTAGTGCCGGCGAGGATGTCGTTTTTGCTATGAATGCATTCATAAAGCGCCTTTTGGCTGTCTCAGATCCTGCACAGATGAAGACAACAGTTTCAGAAACAAGTGCTAATCAGCTAGCCAACTTGATGTTTTGGTTGATGATTGTTGGCTACAGCATGCGCAATATTGAAGTGCGGTTTGACATGGAAAGAGTATTGGGTGCTGCCCCAAAGATAGGGGAATTACCACCTGGAGAAAACATATAGCAGGGAGGAAAGGGGC GTAAGAGTGGGGAAGTGATGATTAGTTAAAATCTAGGGTTACTGGCCGGCCAAGATAACTGTATTTGCGTGGTCATATTATTTTGAGTGGAATGGATTACAGCATTTGTGCAAAGACA CCAATCCACATTTTGGGAACTAAGATGAGATGCTAGGCATAGCCATTTCTGATATATTTCTCGGGGAGGTATAGACGACGAGATACATAGAAACAATAGAACGGGACCTGATGCTGTAGTTTTGCAA CCTGACTATTGTTGGTAAAAT ACAAT CAAGGCAACT CATATT ACCATATTGTACT CCCATGTGGTATG TCTAGTT CA CCAATC AAGTTGAG TCTGATGTGAGTTTGTTTAGAATCTTGACTAATTTTGCTACAAGACACATAAGTTTGTGTAATTTGATAGCGTACATCG]
[+] EMBL AK105388 [ AAGGAGCTGGCAAGTAGTGCCGGCGAGGATGTCGTTTTTGCTATGAATGCATTCATAAAGCGCCTTTTGGCTGTCTCAGATCCTGCACAGATGAAGACAACAGTTTCAGAAACAAGTGCTAATCAGCTAGCCAACTTGATGTTTTGGTTGATGATTGTTGGCTACAGCATGCGCAATATTGAAGTGCGGTTTGACATGGAAAGAGTATTGGGTGCTGCCCCAAAGATAGGGGAATTACCACCTGGAGAAAACATATAGCAGGGAGGAAAGGGGC GTAAGAGTGGGGAAGTGATGATTAGTTAAAATCTAGGGTTACTGGCCGGCCAAGATAACTGTATTTGCGTGGTCATATTATTTTGAGTGGAATGGATTACAGCATTTGTGCAAAGACA CCAATCCACATTTTGGGAACTAAGATGAGATGCTAGGCATAGCCATTTCTGATATATTTCTCGGGGAGGTATAGACGACGAGATACATAGAAACAATAGAACGGGACCTGATGCTGTAGTTTTGCAA CCTGACTATTGTTGGTAAAAT ACAAT CAAGGCAACT CATATT ACCATATTGTACT CCCATGTTGTATG TCTAGTT CA CCAATC AAGTTGAG TCTGATGT ]
[+] EMBL AU184553 [ ATTGGGTGCTGCCCCAAAGATAGGGGAATTACCACCTGGAGAAAACATATAGCAGGGAGGAAAGGGGC GTAAGAGTGGGGAAGTGATGATTAGTTAAAATCTAGGGTTACTGGCCGGCCAAGATAACTGTATTTGCGTGGTCATATTATTTTGAGTGGAATGGATTACAGCATTTGTGCAAAGACA CCAATCCACATTTTGGGAACTAAGATGAGATGCTAGGCATAGCCATTTNTGATATATTTCTCGGGGAGGTATAGACGACGAGATACATAGAAACAATAGAACGGGACCTGATGCTGTAGTTTTGCAA CCTGACTATTGTTGGTAAAAT ACAAT CAAGGCAACT CATATT ACCATATTGTACT CCCATGTTGTATG TCTAGTT CA CCAATC AAGTTGAG TCTGATGTGAGTTTGTTTAAAAAAAAAA ]
[+] EMBL AU173400 [ AGATAGGGGAATTACCNCCTGGAGAAAACATATAGCAGGGAGGAAAGGGGC GTAAGAGTGGGGAAGTGATGATTAGTTAAAATCTAGGGTTACTGGCCGGCCAAGATAACTGTATTTGCGTGGTCATATTATTTTGAGTGGAATGGATTACAGCATTTGTGCAAAGACACCCAATCCCCATTTTGGGAACTAAGATGAGATGCTAGGCATAGCCATTTCTGATATATTTCTCGGGGAGGTATAGACGGCGAGATACATAGAAACAATAGAACGGGGCCTGATGCTGTAGTTTTGCAACCCTGACTATTGTTGGTAAAATNCCAATCCAAGGCAACTCCATATTNCCCATATTGNACTCCCCATGTTGTATGTTCTAGTTCCACCCAATCCAAAGTTGAGTTCTNATGNGAGNTTGNTTNAAAAAAAAA ]
[+] EMBL AU173461 [ TTATTTTGAGTGGAATGGATTNCAGCATTTGTGCAAAGACA CCAATCCNCATTTTGGGAANTAAGATGAGATGCTAGGCATAGCCATTTCTGATATATTTCTCGGGGAGGTATAGACGACGAGATACATAGAAACAATAGAACGGGACCTGATGCTGTAGTTTTGCAA CCTGACTATTGTTGGTAAAAT ACAAT CAAGGCAACT CATATT ACCATATTGTACT CCCATGTTGTATG TCTAGTT CA CCAATC AAGTTGAG TCTGATGTGAGTTTGTTTAAAAAAAAAA ]
consensusID : consensus_15054#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 836 fasta sequence
[CGTCGCCGCCGCCGCCGCCGCCGCGGCGATCGCCACGCCATGTCTCCCTCCCTCTTGCTTACCTCTAGGGGTACCCACTCGCCGGCGCCACGGCCGCAAACCCGTCGAGCATCACAACTGCTCGTCTCTTTCCCCTCGCGCCGCAGCCGCTTCGTCGGCCTCCGCCTCGCGCGCGCAGCCGCCGATTCGCAGGGGCCCAACGGCGCTGCCCCTGGATCTGGATCTGGTGGGGACGGAGAGGGCAAGGCAGCCAATGGTGCCGACACCAAATTGAACATTTGGGAATGGTAACAGGACATGGAGGTTGATCCTATACCAAGACACCATGTATATATACATATATAAATGATACACCACCAACTGCAATTCTATCAGTCGGTTTCATCTGAATTACACTGTGCAATGAATAGATATATCATATGTATGACTCATCATGCTCACATTTTTTCTCCATTAGTGGGCCGCTTGTTAATAATATATAAGTTGATGAAATATTGTTAACTCTCACTGATCCATGGCATCAATGATCTGTCTAATACTGCACGAGCGACTGTTGTCTGTTGCTAGGGCAGCTGGTAGTCAATGGATTGTTCACTCTCCACAAAACATGTTGAGTTGAGGGCTTTTATGATATCTTGCCTTTGTTGATCTGTTCCTACACAAAACAACTTGAAGGTCCTATATGTAAGAAAATTAGCAAGGATTGCTTGACAATTGTTGATAGCCTTATAGCTCAGGGCAGAAAGTTCTGGCAGAACCTTATATTCAAGAAAATTAGCAAGGATCTCTTGACAATCTTTGATAGACTTATCGCTCAGAGCAGAAAGTTCTAGCAC]
[+] EMBL CB634112 [CGTCGCCGCCGCCGCCGCCGCCGCGGCGATCGCCACGCCATGTCTCCCTCCCTCTTGCTTACCTCTAGGGGTACCCACTCGCCGGCGCCACGGCCGCAAACCCGTCGAGCATCACAACTGCTCGTCTCTTTCCCCTCGCGCCGCAGCCGCTTCGTCGGCCTCCGCCTCGCGCGCGCAGCCGCCGATTCGCAGGGGCCCAACGGCGCTGCCCCTGGATCTGGATCTGGTGGGGACGGAGAGGGCAAGGCAGCCAATGGTGCCGACACCAAATTGAACATTTGGGAATGGTAACAGGACATGGAGGTTGATCCTATACCAAGACACCATGTATATATACATATATAAATGATACACCACCAACTGCAATTCTATCAGTCGGTTTCATCTGAATTACACTGTGCAATGAATAGATATATCATATGTATGACTCATCATGCTCACATTTTTTCTCCATTAGTGGGCCGCTTGTTAATAATATATAAGTTGATGAAATATTGTTAACTCTCACTGATCCATGGCATCAATGATCTGTCTAATACTGCACGAGCGACTGTTGTCTGTTGCTAGGGCAGCTGGTAGTCAATGGATTGTTCACTCTCCACAAAACATGTTGAGTTGAGGGCTTTTATGATATCTTGCCTTTGTTGATCTGTTCCTACACAAAACAACTTGAAGGTCCTATATGTAAGAAAATTAGCAAGGATTGCTTGACAATTGTTGATAGCCTTATAGCTCAGGGCAGAAAGTTCTGGCAGAACCTTATATTCAAGAAAATTAGCAAGGATCTCTTGACAATCTTTGATAGACTTATCGCTCAGAGCAGAAAGTTCTAGCAC]
[+] EMBL CB634078 [CGTCGCCGCCGCCGCCGCCGCCGCGGCGATCGCCACGCCATGTCTCCCTCCCTCTTGCTTACCTCTAGGGGTACCCACTCGCCGGCGCCACGGCCGCAAACCCGTCGAGCATCACAACTGCTCGTCTCTTTCCCCTCGCGCCGCAGCCGCTTCGTCGGCCTCCGCCTCGCGCGCGCAGCCGCCGATTCGCAGGGGCCCAACGGCGCTGCCCCTGGATCTGGATCTGGTGGGGACGGAGAGGGCAAGGCAGCCAATGGTGCCGACACCAAATTGAACATTTGGGAATGGTAACAGGACATGGAGGTTGATCCTATACCAAGACACCATGTATATATACATATATAAATGATACACCACCAACTGCAATTCTATCAGTCGGTTTCATCTGAATTACACTGTGCAATGAATAGATATATCATATGTATGACTCATCATGCTCACATTTTTTCTCCATTAGTGGGCCGCTTGTTAATAATATATAAGTTGATGAAATATTGTTAACTCTCACTGATCCATGGCATCAATGATCTGTCTAATACTGCACGAGCGACTGTTGTCTGTTGCTAGGGCAGCTGGTAGTCAATGGATTGTTCACTCTCCACAAAACATGTTGAGTTGAGGGCTTTTATGATATCTTGCCTTTGTTGATCTGTTCCTACACAAAACAACTTGAAGGTCCTATATGTAAGAAAATTAGCAAGGATTGCTTGACAATTGTTGATAGCCTTATAGCTCAGGGCAGAAAGTTCTGGCAGAACCTTATATTCAAGAGAATTAGCAAGGATCTCTTGACAATCTTTGATAGA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15054#0 TTGTTATCCACATTTGCGGGGCGCAGCAGCAAAAGCACAAGGGCAAAGCCTCGCCGCCGT 60
consensus_15054#1 ------------------------------------------------------------
consensus_15054#0 CGCCGCCGCCGCCGCCGCCGCCGCCGCGGCGATCGCCACGCCATGTCTCCCTCCCTCTTG 120
consensus_15054#1 ---CGTCGCCGCCGCCGCCGCCGCCGCGGCGATCGCCACGCCATGTCTCCCTCCCTCTTG 57
** ******************************************************
consensus_15054#0 CTTACCTCTAGGGGTACCCACTCGCCGGCGCCACGGCCGCAAACCCGTCGAGCATCACAA 180
consensus_15054#1 CTTACCTCTAGGGGTACCCACTCGCCGGCGCCACGGCCGCAAACCCGTCGAGCATCACAA 117
************************************************************
consensus_15054#0 CTGCTCGTCTCTTTCCCCTCGCGCTGCAGCCGCTTCGTCGGCCTCCGCCTCGCGCGCGCA 240
consensus_15054#1 CTGCTCGTCTCTTTCCCCTCGCGCCGCAGCCGCTTCGTCGGCCTCCGCCTCGCGCGCGCA 177
************************ ***********************************
consensus_15054#0 GCCGCCGATTCGCAGGGGCCCAACGGCGCTGCCCCTGGATCTGGATCTGGTGGGGACGGA 300
consensus_15054#1 GCCGCCGATTCGCAGGGGCCCAACGGCGCTGCCCCTGGATCTGGATCTGGTGGGGACGGA 237
************************************************************
consensus_15054#0 GAGGGCAAGGCAGCCAATGGTGCCGACACCAAATTGCCAAAGAACCGGAGGGACATACTC 360
consensus_15054#1 GAGGGCAAGGCAGCCAATGGTGCCGACACCAAATTG---AACATTTGGGAATGGTAACAG 294
************************************ ** * ** **
consensus_15054#0 CTGGAATACGTTAAAAATGTCCAGCCAGAGTTTATGGAGCTCTTCATAAAAAGA-GCTCC 419
consensus_15054#1 GACATGGAGGTTGATCCTAT--ACCAAGACACCATGTATATATACATATATAAATGATAC 352
* *** * * * * * *** *** * * * **** * * * * * *
consensus_15054#0 GCCACAGGTTGTTGATGCCATGCGCCAAACGGTGACTAATATGATTGGGACTCTGCCACC 479
consensus_15054#1 ACCACCAACTGC-AATTCTAT----CAGTCGGT--TTCATCTGAATTACACTGTGCAATG 405
**** ** ** * ** ** **** * ** *** * *** *** *
consensus_15054#0 TCAATTTTTCGCTGTAACTGTGACAACGGTTGCTGAAAATCTAGCTCAGCTTATGTACAG 539
consensus_15054#1 AATAGATAT-ATCATATGTATGACTCATCATGCTCACATTTTTTCTCCATTAGTGGGCCG 464
* * * ** * **** **** * * * * *** * ** * *
consensus_15054#0 TGTTCTGATGACCGGATACATGTTCAGGAATGCGCAGTATCGTCTGGAATTGCAACAGAG 599
consensus_15054#1 CTTGTTAATAAT---ATATAAGTTGATGAA------ATATTGTT--AACTCTCACTGATC 513
* * ** * *** * *** * *** *** ** * * **
consensus_15054#0 TTTGGAGCAGATTGCCCTTCCAGAACCAAAAGAAGAAAATGATTCTGCAGATTATGCTCC 659
consensus_15054#1 CATGGCATCAATGATCTGTCTAATACTGCACGAGCGA-------CTGTTG--TCTGTTGC 564
*** ** * ** * ** * ** * *** * * ** * *
consensus_15054#0 TGGAACCCAGAAAAAGGTTACTGGAGAAGTTATCCGATGGAACAAGACTACTGGTCCTGA 719
consensus_15054#1 TAGGG--CAGCTGGTAGTCAATGGATTGTTCACTCTCC---ACAAAACATGTTGAGTTGA 619
* * *** ** * **** * * * **** ** * * ***
consensus_15054#0 GAAAATTGATGCAGTAAAATATATAGAATTGCTTGAAGCAGAAATTGATGAACTCAGCCA 779
consensus_15054#1 GGGCTTTTATG-------ATATCTTGCCTTT------------GTTGATCTGTTCCTACA 660
* ** *** **** * * ** ***** ** **
consensus_15054#0 TCAAGTTGCTAGAAAATCATCTCAAGGAAGTAATGAACTCTTGGAATATCTAAAAACTCT 839
consensus_15054#1 CAAAACAACTTGAAGGTCCTATATGTAAGAAAATTAGCA--AGGATTGCTTGACAATTGT 718
** ** *** ** * * * *** * * *** * * * ** * *
consensus_15054#0 AGA-ACCTCAAAATCTGAAGGAGCTGGCAAGTAGTGCCGGCGAGGATGTCGTTTTTGCTA 898
consensus_15054#1 TGATAGCCTTATAGCTCAGGG------CAGAAAGTTCTGGC-AGAACCTTATATTC---- 767
** * * * * ** * ** ** *** * *** ** * * * **
consensus_15054#0 TGAATGCATTCATAAAGCGCCTTTTGGCTGTCTCAGATCC-TGCACAGATGAAGACAACA 957
consensus_15054#1 --AAGAAAATTAGCAAGGATCTCTTGACAATCTTTGATAGACTTATCGCTCAGAGCAGAA 825
** * * * *** ** *** * *** *** * * * * ** *
consensus_15054#0 GTTTCAGAAACAAGTGCTAATCAGCTAGCCAACTTGATGTTTTGGTTGATGATTGTTGGC 1017
consensus_15054#1 AGTTCTAGCAC------------------------------------------------- 836
*** **
consensus_15054#0 TACAGCATGCGCAATATTGAAGTGCGGTTTGACATGGAAAGAGTATTGGGTGCTGCCCCA 1077
consensus_15054#1 ------------------------------------------------------------
consensus_15054#0 AAGATAGGGGAATTACCACCTGGAGAAAACATATAGCAGGGAGGAAAGGGGCGTAAGAGT 1137
consensus_15054#1 ------------------------------------------------------------
consensus_15054#0 GGGGAAGTGATGATTAGTTAAAATCTAGGGTTACTGGCCGGCCAAGATAACTGTATTTGC 1197
consensus_15054#1 ------------------------------------------------------------
consensus_15054#0 GTGGTCATATTATTTTGAGTGGAATGGATTACAGCATTTGTGCAAAGACACCAATCCACA 1257
consensus_15054#1 ------------------------------------------------------------
consensus_15054#0 TTTTGGGAACTAAGATGAGATGCTAGGCATAGCCATTTCTGATATATTTCTCGGGGAGGT 1317
consensus_15054#1 ------------------------------------------------------------
consensus_15054#0 ATAGACGACGAGATACATAGAAACAATAGAACGGGACCTGATGCTGTAGTTTTGCAACCT 1377
consensus_15054#1 ------------------------------------------------------------
consensus_15054#0 GACTATTGTTGGTAAAATACAATCAAGGCAACTCATATTACCATATTGTACTCCCATGTT 1437
consensus_15054#1 ------------------------------------------------------------
consensus_15054#0 GTATGTCTAGTTCACCAATCAAGTTGAGTCTGATGTGAGTTTGTTTAAAAAAAAAACTAA 1497
consensus_15054#1 ------------------------------------------------------------
consensus_15054#0 TTTTGCTACAAGACACATAAGTTTGTGTAATTTGATAGCGTACATCG 1544
consensus_15054#1 -----------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||