cluster # 15101

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Oryza sativa
cluster # 15101 cluster # 15101 Sequences # 20 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_15101#0 length = 1018 sequences # 10

consensus_15101#1 length = 988 sequences # 7
consensus_15101#2 length = 540 sequences # 3

consensusID : consensus_15101#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1018
fasta sequence

                              [GAAGGAGTAGAAACTTTCTCTCCACTTTTTACGGATCTGCCGTTCCCCTCCCCCCGCGCCGCCGCCGCCGCCGTCGAGTCGTGCCCGTATC-GGCGTGC-GGCTTCGGCAGC-GGCAGC-GGCAGTTCAGGGATGAGGAGGAGTGGCGGCAAGGC-GGATCCAGCGACGGCTCGGAGACGAGGAGGTTCGGGCGGTGG-ATCCGGTGATGCCGAGGCGCGTGGGTGCCGGATCTAGTAGCGTCGGCGTCGTCCTTCGCTCTGCCTCTGCTTCGTCAACTACTCGGCCGGCAGTGGCGATGTCACAGAGGATCCCCTCTCCAGCTAGAGGGAGGATGGGCGCCACCCATGAACCGGCGACGGGATGGGT-GG-GGATGCATCCAGCGCCCCGACTGCTCCTTGCCGACGACAGCCGCTGCCCTGACCGCTTCCTCGCCGTGCAGGTCATGCCGGCGGCCGCCCCCACTGTTCCCTCGCTTTGAAGAGTTGGACCAAATTTCCGGAAGCTGCCGTTGATGGAGGTCAACGCCCTGCCCTGAAGCGGTTGGTGTATGAAGTAGAGAAGGACTGCATGAAAGTTCTAAGGTTTTGTGGATCATACTGTGACCATGGCCCGGCGGCTGATATTAAGAAATTGTTCCGAATATCAACTGATCGTCATCCTCGACACGGCCATCGTCAACGCTCGTCGCCGGCGGCCAACATGAAGGGCAGGGGTGATGCAGAGATGTCGACTTGGGATGAGCGCGCCGCAAATAACGACTGGCTCCGGTGGCAGGAGATTTGAAGAATCTTGGCGGCTGATGTCCTCTGCACTGTAATTTTTTTGGAAAGAACCCATTTCTACTTCGTTGATGCCACCGTCTGGCATTCACAGTCATGTAATACTAGTGTTCAAGATGAATGTCTATAAAAAATCTCCCGTGTGTAATTTTCTTTAAAAAAAAAATTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF334990             [GAAGGAGTAGAAACTTTCTCTCCACTTTTTACGGATCTGCCGTTCCCCTCCCCCCGCGCCGCCGCCGCCGCCGTCGAGTCGTGCCCGTATC GGCGTGC GGCTTCGGCAGC GGCAGC GGCAGTTCAGGGATGAGGAGGAGTGGCGGCAAGGC GGATCCAGCGACGGCTCGGAGACGAGGAGGTTCGGGCGGTGG ATCCGGTGATGCCGAGGCGCGTGGGTGCCGGATCTAGTAGCGTCGGCGTCGTCCTTCGCTCTGCCTCTGCTTCGTCAACTACTCGGCCGGCAGTGGCGATGTCACAGAGGATCCCCTCTCCAGCTAGAGGGAGGATGGGCGCCACCCATGAACCGGCGACGGGATGGGT GG GGATGCATCCAGCGCCCCGACTGCTCCTTGCCGACGACAGCCGCTGCCCTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CF296024             [               TTCTCTCCACTTTTTATGGATCTGCCGTTCCCCTCCCCCCGCGCCGCCGCCGCCGCCGTCGAGTCGTGCCCGTATC GGCGTGC GGCTTCGGCAGC GGCAGC GGCAGTTCAGGGATGAGGAGGAGTGGCGGCAAGGC GGATCCAGCGACGGCTCtg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CF279767             [                 CTCTCCACTTTTTACGGATCTGCCGTTCCCCTCCCCCCGCGCCGCCGCCGCCGCCGTCGAGTCGTGCCCGTATC GGCGTGC GGCTTCGGCAGC GGCAGC GGCAGTTCAGGGATGAGGAGGAGTGGCGGCAAGGC GGATCCAGCGACGGCTCGGAGACGAGGAGGTTCGGGCGGTGG ATCCGGTGATGCCGAGGCGCGTGGGTGCCGGATCTAGTAGCGTCGGCGTCGTCCTTCGCTCTGCCTCTGCTTCGTCAACTACTCGGCCGGCAGTGGCGATGTCACAGAGGATCCCCTCTCCAGCTAGAGGGAGGATGGGCGCCACCCATGAACCGGCGACGGGATGGGTGGG GGATGCATCCAGCGCCCCGACTGCTCCTTGCCGACGACAGCCGCTGCCCTGACCGCTTCCTCGCCGTGCAGGTCATGCCGGCGGCCGCCCCCACTGTTCCCTCGCTTTGAAGAGTTGGACCAAATTTCCGGAAGCTGCCGTTGATGGAGGTCAACGCCCTGCCCTGAAGCGGTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CF279089             [                  TCTCCACTTTTTACGGATCTTCCGTTCCCCTCCCCCCGCGCCGCCGCCGCCGCCGTCGAGTCGTGCCCGTATC GGCGTGC GGCTTCGGCAGC GGCAGC GGCAGTTCAGGGATGAGGAGGAGTGGCGGCAAGGC GGATCCAGCGACGGCTTTTTTACTAGGAGGTTCGGGCGGTGGTATCCGGTGATGCCGAGGCGCGTTGGNGCCGGATCTAGTATCGTCGGCGTCGTCCTTCGCTCTGCCTCTGCTTCGTCAACTACTCGGCCGGCAGTGGCGATGTCACAGAGGATCCCCTCTCCAGCTAGAGGGAGGATGGGCGCCACCCATGAACCGGCGACGGGATGGGT GG GGATGCATCCAGCGCCCCGACTGCTCCTTGCCGACGACAGCCGCTGCCCTGACCGCTTCCTCGCCGTGCAGGTCATGCCGGCGGCCGCCCCCACTGTTCCCTCGCTTTGAAGAGTTGGACCAAATTTCCGGAAGCTGCCGTTGATGGAGGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CF312654             [                  TCTCCACTTTTTACGGATCTGCCGTTCCCCTCCCCCCGCGCCGCCGCCGCCGCCGTCGAGTCGTGCCCGTATC GGCGTGC GGCTTCGGCAGC GGCAGC GGCAGTTCAGGGATGAGGAGGAGTGGCAGCAAGGC GGATCCAGCGACGGCTCGGAGACGAGGAGGTTCGGGCGGTGG ATCCGGTGATGCCGAGGCGCGTGGGTGCCGGATCTAGTAGCGTCGGCGTCGTCCTTCGCTCTGCCTCTGCTTCGTCAACTACTCGGCCGGCAGTGGCGATGTCACAGAGGATCCCCTCTCCAGCTAGAGGGAGGATGGGCGCCACCCATGAACCGGCGACGGGATGGGT GG GGATGCATCCAGCGCCCCGACTGCTCCTTGCCGACGACAGCCGCTGCCCTGACCGCTTCCTCGCCGTGCAGGTCATGCCGGCGGCCGCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CF333731             [                   CTCCACTTTTTACGGATCTGCCGTTCCCCTCCCCCCGCGCCGCCGCCGCCGCCGTCGAGTCGTGCCCGTATC GGCGTGC GGCTTCGGCAGC GGCAGC GGCAGTTCAGGGATGAGGAGGAGTGGCGGCAAGGC GGATCCAGCGACGGCTCGGAGACGAGGAGGTTCGGGCGGTGG ATCCGGTGATGCCGAGGCGCGTGGGTGCCGGATCTAGTAGCGTCGGCGTCGTCCTTCGCTCTGCCTCTGCTTCGTCAACTACTCGGCCGGCAGTGGCGATGTCACAGAGGATCCCCTCTCCAGCTAGAGGGAGGATGGGCGCCACCCATGAACCGGCGACGGGATGGGT GGNGGATGCATCCAGCGCCCCGACTGCTCCTTGCCGACGACAGCCGCTGCCCTGACCGCCTCCTCGCCGTGCAGGTCATGCCGGCGGCCGCCCCCACTGTTCCCTCGCTNTGAAGAGTTGGACCAAATTTCCGGAAGCTGCCGTTGATGGAGGTCAACGCCCTGCCCTGAAGCGGTTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU174408             [                            TTACGGATCTGCCGTTCCCCTCCCCCCGCGCCGCCGCCGCCGCCGTCGAGTCGTGCCCGTATCAGGCGTGCAGGCTTCGGCAGCAGGCAGCAGGCAGTTCAGGGATGAGGAGGAGTGGCGGCAAGGCAGGATCCAGCGACGGCTCGGAGACGAGGAGGTTCGGGCGGTGG ATCCGGTGATGCCGAGGCGCGTGGGTGCCGGATCTAGTAGCGTCGGCGTCGTCCTTCGCTCTGCCTCTGCTTCGTCAACTACTCGGCCGGCAGTGGCGATGTCACAGAGGATCCCCTCTCCAGCTAGAGGGAGGATGGGCGCCACCCATGAACCGGCGACGGGATGGGT GG GGATGCATCCAGCGCCCCGACTGCTCCTTGCCGACGACAGCCGCTGCCCTGACCGCTTCCTCGCCGTGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU033300             [                            TTACGGATCTGCCGTTCCCCTCCCCCCGCNTCGCCGCCGCCGCCGTCGAGTCGTGCCCGTATC GGCGTGC GGCTTCGGCAGC GGCAG  GCCAGTTCAGGGATGAGGAGGAGTGGCGGCAAGGC GGATCCAGCGACGCCTCGGAGACGAGGAGGTTCGGGCGGTGG ATCCGGTGATGCCGAGGCGCGTGGGTGCCGGATCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CF312655             [                                                                                                                                                                                                                                                                                                                                                                             GGT GG GGATGCATCCAGCGCCCCGACTGCTCC TGCCGACGACAGCCGCTGCCCTGACCGCTTCCTCGCCGTGCAGGTCATGCCGGCGGCCGCCCCCACTGTTCCCTCGCTTTGAAGAGTTGGACCAAATTTCCGGAAGCTGCCGTTGATGGAGGTCAACGCCCTGCCCTGAAGCGGTTGGTGTATGAAGTAGAGAAGGACTGCATGAAAGTTCTAAGGTTTTGTGGATCATACTGTGACCATGGCCCGGCGGCTGATATTAAGAAATTGTTCCGAATATCAACTGATCGTCATCCTCGACACGGCCATCGTCAACGCTCGTCGCCGGCGGCCAACATGAAGGGCAGGGGTGATGCAGAGATGTCGACTTGGGATGAGCGCGCCGCAAATAACGACTGGCTCCGGTGGCAGGAGATTTGAAGAATCTTGGCGGCTGATGTCCTCTGCACTGTAATTTTTTTGGAAAGAACCCATTTCTACTTCGTTGATGCCACCGTCTGGCATTCACAGTCATGTAATACTAGTGTTCAAGATGAATGTCTATAAAAAA                                                                                                             ]
[+] EMBL CF329702             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ACTGGCTCCGGTGGCAGGAGATTTGAAGAATCTTGGCGGCTGATGTCCTCTGCACTGTAATTTTTTTGGAAAGAACCCATTTCTACTTCGTTGATGCCACCGTCTGGCATTCACAGTCATGTAATACTAGTGTTCAAGATGAATGTCTATATATTGTCTCCCGTGTGTAATTTTCTTTAAAAAAAAAATTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_15101#0
GAAGGAGTAGAAACTTTCTCTCCACTTTTTACGGATCTGCCGTTCCCCTCCCCCCGCGCC
GCCGCCGCCGCCGTCGAGTCGTGCCCGTATCGGCGTGCGGCTTCGGCAGCGGCAGCGGCA
GTTCAGGGATGAGGAGGAGTGGCGGCAAGGCGGATCCAGCGACGGCTCGGAGACGAGGAG
GTTCGGGCGGTGGATCCGGTGATGCCGAGGCGCGTGGGTGCCGGATCTAGTAGCGTCGGC
GTCGTCCTTCGCTCTGCCTCTGCTTCGTCAACTACTCGGCCGGCAGTGGCGATGTCACAG
AGGATCCCCTCTCCAGCTAGAGGGAGGATGGGCGCCACCCATGAACCGGCGACGGGATGG
GTGGGGATGCATCCAGCGCCCCGACTGCTCCTTGCCGACGACAGCCGCTGCCCTGACCGC
TTCCTCGCCGTGCAGGTCATGCCGGCGGCCGCCCCCACTGTTCCCTCGCTTTGAAGAGTT
GGACCAAATTTCCGGAAGCTGCCGTTGATGGAGGTCAACGCCCTGCCCTGAAGCGGTTGG
TGTATGAAGTAGAGAAGGACTGCATGAAAGTTCTAAGGTTTTGTGGATCATACTGTGACC
ATGGCCCGGCGGCTGATATTAAGAAATTGTTCCGAATATCAACTGATCGTCATCCTCGAC
ACGGCCATCGTCAACGCTCGTCGCCGGCGGCCAACATGAAGGGCAGGGGTGATGCAGAGA
TGTCGACTTGGGATGAGCGCGCCGCAAATAACGACTGGCTCCGGTGGCAGGAGATTTGAA
GAATCTTGGCGGCTGATGTCCTCTGCACTGTAATTTTTTTGGAAAGAACCCATTTCTACT
TCGTTGATGCCACCGTCTGGCATTCACAGTCATGTAATACTAGTGTTCAAGATGAATGTC
TATAAAAAATCTCCCGTGTGTAATTTTCTTTAAAAAAAAAATTTTTTAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_15101#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 988
fasta sequence

                              [TGGACTGAAGGAGTAGAAACTCTCCACTTTTTACGGATCTGCCGTTCCCCTCCCCCCGCGCCGCCGCCGCCGCCGTCGAGTCGTGCCCGTATCGGCGTGCGGCTTCGGCAGCGGCAGCGGCAGTTCAGGGATGAGGAGGAGTGGCGGCAAGGCGGATCCAGCGACGGCTCGGAGACGAGGAGGTTCGGGCGGTGGATCCGGTGATGCCGAGGCGCGTGGGTGCCGGATCTAGTAGCGTCGGCGTCGTCCTTCGCTCTGCCTCTGCTTCGTCAACTACTCGGCCGGCAGTGGCGATGTCACAGAGGATCCCCTCTCCAGCTAGAGGGNAGGATGGGCGCCACCCATGAACCGGCGACGGGATGGGTCATGCCGGCGGCCGCCCCCACTGTTCCCTCGCTTTGAAGAGTTGGACCAAATTTCCGGAAGCTGCCGTTGATGGAGGTCAACGCCCTGCCCTGAAGCGGTTGGTGTATGAAGTANAGAAGGACTGCATGAAAGTTCTAAGGTTTTGTGGATCATACTGTGACCATGGCCCGGCGGCTGATATTAAGAAATTGTTCCGAATATCAACTGATCGTCATCCTCGACACGGCCATCGTCAACGCTCGTCGCCGGCGGCCAACATGAAGGGCAGGGGTGATGCAGAGATGTCGACTTGGGATGAGCGCGCCGCAAATAACGACTGGCTCCGGTGGCAGGAGATTTGAAGAATCTTGGCGGCTGATGTCCTCTGCACTGTAATTTTTTTGGAAAGAACCCATTTCTACTTCGTTGATGCCACCGTCTGGCATTCACAGTCATGTAATACTAGTGTTCAAGATGAATGTCTATATATTGTCTCCCGTGTGTAATTTTCTTTACTGGTCATGTGATAGAACCAAAATACAATTGTCCTGATATCACCATGTTTTTGGTGATCTTAATACTATTCGTAAAGATATTACTGAAGAGATTAAAATTATAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF281870             [TGGACTGAAGGAGTAGAAACTCTCCACTTTTTACGGATCTGCCGTTCCCCTCCCCCCGCGCCGCCGCCGCCGCCGTCGAGTCGTGCCCGTATCGGCGTGCGGCTTCGGCAGCGGCAGCGGCAGTTCAGGGATGAGGAGGAGTGGCGGCAAGGCGGATCCAGCGACGGCTCGGAGACGAGGAGGTTCGGGCGGTGGATCCGGTGATGCCGAGGCGCGTGGGTGCCGGATCTAGTAGCGTCGGCGTCGTCCTTCGCTCTGCCTCTGCTTCGTCAACTACTCGGCCGGCAGTGGCGATGTCACAGAGGATCCCCTCTCCAGCTAGAGGGNAGGATGGGCGCCACCCATGAACCGGCGACGGGATGGGTCATGCCGGCGGCCGCCCCCACTGTTCCCTCGCTTTGAAGAGTTGGACCAAATTTCCGGAAGCTGCCGTTGATGGAGGTCAACGCCCTGCCCTGAAGCGGTTGGTGTATGAAGTANAGAAGGACTGCATGAAAGTTCTAAGGTTTTGTGGATCATACTGTGACCATGGCCCGGCGGCTGATATTAAGAAATTGTTCCGAATATCAACTGATCGTCATCCTCGACACGGCCATCGTCAACGCTC                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AK071086             [                                ACGGATCTGCCGTTCCCCTCCCCCCGCGCCGCCGCCGCCGCCGTCGAGTCGTGCCCGTATCGGCGTGCGGCTTCGGCAGCGGCAGCGGCAGTTCAGGGATGAGGAGGAGTGGCGGCAAGGCGGATCCAGCGACGGCTCGGAGACGAGGAGGTTCGGGCGGTGGATCCGGTGATGCCGAGGCGCGTGGGTGCCGGATCTAGTAGCGTCGGCGTCGTCCTTCGCTCTGCCTCTGCTTCGTCAACTACTCGGCCGGCAGTGGCGATGTCACAGAGGATCCCCTCTCCAGCTAGAGGG AGGATGGGCGCCACCCATGAACCGGCGACGGGATGGGTCATGCCGGCGGCCGCCCCCACTGTTCCCTCGCTTTGAAGAGTTGGACCAAATTTCCGGAAGCTGCCGTTGATGGAGGTCAACGCCCTGCCCTGAAGCGGTTGGTGTATGAAGTAGAGAAGGACTGCATGAAAGTTCTAAGGTTTTGTGGATCATACTGTGACCATGGCCCGGCGGCTGATATTAAGAAATTGTTCCGAATATCAACTGATCGTCATCCTCGACACGGCCATCGTCAACGCTCGTCGCCGGCGGCCAACATGAAGGGCAGGGGTGATGCAGAGATGTCGACTTGGGATGAGCGCGCCGCAAATAACGACTGGCTCCGGTGGCAGGAGATTTGAAGAATCTTGGCGGCTGATGTCCTCTGCACTGTAATTTTTTTGGAAAGAACCCATTTCTACTTCGTTGATGCCACCGTCTGGCATTCACAGTCATGTAATACTAGTGTTCAAGATGAATGTCTATATATTGTCTCCCGTGTGTAATTTTCTTTACTGGTCATGTGATAGAACCAAAATACAATTGTCCTGATATCACCATGTTTTTGGTGATCTTAATACTATTCGTAAA                                                    ]
[+] EMBL CB682544             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TGCATGAAAGTTCTAAGGTTTTGTGGATCATACTGTGACCATGGCCCGGCGGCTGATATTAAGAAATTGTTCCGAATATCAACTGATCGTCATCCTCGACACGGCCATCGTCAACGCTCGTCGCCGGCGGCCAACATGAAGGGCAGGGGTGATGCAGAGATGTCGACTTGGGATGAGCGCGCCGCAAATAACGACTGGCTCCGGTGGCAGGAGATTTGAAGAATCTTGGCGGCTGATGTCCTCTGCACTGTAATTTTTTTGGAAAGAACCCATTTCTACTTCGTTGATGCCACCGTCTGGCATTCACAGTCATGTAATACTAGTGTTCAAGATGAATGTCTATATATTGTCTCCCGTGTGTAATTTTCTTTACTGGTCATGTGATAGAACCAAAATACAATTGTCCTGATATCACCATGTTTTTGGTGATCTTAATACTATTCGTAAAGATATTAC                                            ]
[-] EMBL CF279088             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ATGAAAGTTTTAAGGTTTTGTGGATCATACTGTGACCATGGCCCGGCGGCTGATATTAAGAAATTGCTCCGAATATCAACTGATCGTCATCCTTGACACGGCCATTGTCAACGTTTGTCGCCGGCGGCCAACATGAAGGGCAGGGGTGATGCAAAAATGTCGACTTGGGATGAGCGCCCCGCAAATAACGACTGGCTCCGGTGGCAGGAGGTTTGAAGAATTTTGGCGGCTGATGTCCTCTGCCCTGTAATTTTTTTGGAAAGAACCCATTTTTACTTCGTTGATGCCCCCGTTTGGCATTCACAGTCATGTAATACTAGTGTTCAAGATGAATGTCTATATATTGTCTCCCGTGGGTAATTTTCTTTACTGGTCATGTGATAGAACCAAAATACAATTGTCCTGATATCCCCATGTTTTTGGTGATTTTAATACTATTCGTAAAGATATTACTGAAGAGATTAAAATTATAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF279768             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GTTCCGAATATCAACTGATCGTCATCCTCGACACGGCCATCGTCAACGCTCGTCGCCGGCGGCCAACATGAAGGGCAGGGGTGATGCAGAGATGTCGACTTGGGATGAGCGCGCCGCAAATAACGACTGGCTCCGGTGGCAGGAGATCTGAAGAATCTTGGCGGCTGATGTCCTCTGCACTGTAATTTTTTTGGAAAGAACCCATTTCTACTTCGTTGATGCCACCGTCTGGCATTCACAGTCATGTAATACTAGTGTTCAAGATGAATGTCTATATATTGTCTCCCGTGTGTAATTTTCTTTACTGGTCATGTGATAGAACCAAAATACAATTGTCCTGATATCACCATGTTTTTGGTGATCTTAATACTATTCGTAAAGATATTACTGAAGAGATTAAAATTATAAAAAAAA                  ]
[-] EMBL CF296025             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TGATCGTCATCCTCGACACGGCCATCGTCAACGCTCGTCGCCGGCGGCCAACATGAAGGGCAGGGGTGATGCAGAGATGTCGACTTGGGATGAGCGCGCCGCAAATAACGACTGGCTCCGGTGGCAGGAGATTTGAAGAATCTTGGCGGCTGATGTCCTCTGCACTGTAATTTTTTTGGAAAGAACCCATTTCTACTTCGTTGATGCCACCGTCTGGCATTCACAGTCATGTAATACTAGTGTTCAAGATGAATGTCTATATATTGTCTCCCGTGTGTAATTTTCTTTACTGGTCATGTGATAGAACCAAAATACAATTGTCCTGATATCACCATGTTTTTGGTGATCTTAATACTATTCGTAAAGATATTACTGAAGAGATTAAAATTATAAAAAA                    ]
[-] EMBL CF334991             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTTTTTGGAAAGAACCCATTTCTACTTCGTTGATGCCACCGTCTGGCATTCACAGTCATGTAATACTAGTGTTCAAGATGAATGTCTATATATTGTCTCCCGTGTGTAATTTTCTTTACTGGTCATGTGATAGAACCAAAATACAATTGTCCTGATATCACCATGTTTTTGGTGATCTTAATACTATTCGTAAAGATATTACTGAAGAGATTAAAAaaaaa                         ]




>consensus_15101#1
TGGACTGAAGGAGTAGAAACTCTCCACTTTTTACGGATCTGCCGTTCCCCTCCCCCCGCG
CCGCCGCCGCCGCCGTCGAGTCGTGCCCGTATCGGCGTGCGGCTTCGGCAGCGGCAGCGG
CAGTTCAGGGATGAGGAGGAGTGGCGGCAAGGCGGATCCAGCGACGGCTCGGAGACGAGG
AGGTTCGGGCGGTGGATCCGGTGATGCCGAGGCGCGTGGGTGCCGGATCTAGTAGCGTCG
GCGTCGTCCTTCGCTCTGCCTCTGCTTCGTCAACTACTCGGCCGGCAGTGGCGATGTCAC
AGAGGATCCCCTCTCCAGCTAGAGGGNAGGATGGGCGCCACCCATGAACCGGCGACGGGA
TGGGTCATGCCGGCGGCCGCCCCCACTGTTCCCTCGCTTTGAAGAGTTGGACCAAATTTC
CGGAAGCTGCCGTTGATGGAGGTCAACGCCCTGCCCTGAAGCGGTTGGTGTATGAAGTAN
AGAAGGACTGCATGAAAGTTCTAAGGTTTTGTGGATCATACTGTGACCATGGCCCGGCGG
CTGATATTAAGAAATTGTTCCGAATATCAACTGATCGTCATCCTCGACACGGCCATCGTC
AACGCTCGTCGCCGGCGGCCAACATGAAGGGCAGGGGTGATGCAGAGATGTCGACTTGGG
ATGAGCGCGCCGCAAATAACGACTGGCTCCGGTGGCAGGAGATTTGAAGAATCTTGGCGG
CTGATGTCCTCTGCACTGTAATTTTTTTGGAAAGAACCCATTTCTACTTCGTTGATGCCA
CCGTCTGGCATTCACAGTCATGTAATACTAGTGTTCAAGATGAATGTCTATATATTGTCT
CCCGTGTGTAATTTTCTTTACTGGTCATGTGATAGAACCAAAATACAATTGTCCTGATAT
CACCATGTTTTTGGTGATCTTAATACTATTCGTAAAGATATTACTGAAGAGATTAAAATT
ATAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_15101#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 540
fasta sequence

                              [GAAGAGTTGGACCAAATTTCCGGAAGCTGCCGTTGATGGAGGTCAACGCCCCTGCCCTGAAGCGGTTGGTGTATGAAGTAGAGAAGGACTGCATGAAAGTTCTAAGGTTTTGTGGATCATACTGTGACCATGGCCCGGCGGCTGATATTAAGAAATTGTTCCGAATATCAACTGATCGTCATCCTCGACACGGCCATCGTCAACGCTCGTCGCCGGCGGCCAACATGAAGGGCAGGGGTGATGCAGAGATGTCGACTTGGGATGAGCGCGCCGCAAATAACGACTGGCTCCGGTGGCAGGAGATTTGAAGAATCTTGGCGGCTGATGTCCTCTGCACTGTAATTTTTTTGGAAAGAACCCATTTCTACTTCGTTGATGCCACCGTCTGGCATTCACAGTCATGTAATACTAGTGTTCAAGATGAATGTCTATATATTGTCTC-CCGTGTGTAATTTTCTTTAAAAATCATGTGATAGAACCAAAATACAATTGTCCTGATATCACCATGTTTTTGGTGATCTTAATACTAAAAAAAAAAAA]

[-] EMBL CF333732             [GAAGAGTTGGACCAAATTTCCGGAAGCTGCCGTTGATGGAGGTCAACGCCCCTGCCCTGAAGCGGTTGGTGTATGAAGTAGAGAAGGACTGCATGAAAGTTCTAAGGTTTTGTGGATCATACTGTGACCATGGCCCGGCGGCTGATATTAAGAAATTGTTCCGAATATCAACTGATCGTCATCCTCGACACGGCCATCGTCAACGCTCGTCGCCGGCGGCCAACATGAAGGGCAGGGGTGATGCAGAGATGTCGACTTGGGATGAGCGCGCCGCAAATAACGACTGGCTCCGGTGGCAGGAGATTTGAAGAATCTTGGCGGCTGATGTCCTCTGCACTGTAATTTTTTTGGAAAGAACCCATTTCTACTTCGTTGATGCCACCGTCTGGCATTCACAGTCATGTAATACTAGTGTTCAAGATGAATGTCTATATATTGTCTC CCGTGTGTAATTTTCTTTACTGGTCATGTGATAGAACCAAAATACAATTGTCCTGATATCACCATGTTTTTGGTGATCTTAATACTAAAAAAAAAAAA]
[+] EMBL CF331856             [                                                                                                                                              TGATATTAAGAAATTGTTCCGAATATCAACTGATCGTCATCCTCGACACGGCCATCGTCAACGCTCGTCGCCGGCGGCCAACATGAAGGGCAGGGGTGATGCAGAGATGTCGACTTGGGATGAGCGCGCCGCAAATAACGACTGGCTCCGGTGGCAGGAGATTTGAAGAATCTTGGCGGCTGATGTCCTCTGCACTGTAATTTTTTTGGAAAGAACCCATTTCTACTTCGTTGATGCCACCGTCTGGCATTCACAGTCATGTAATACTAGTGTTCAAGATGAATGTCTATATATTGTCTC CCGTGTGTAATTTTCTTTAAAAA                                                                           ]
[-] EMBL CF331855             [                                                                                                                                               GATATTAAGAAATTGTTCCGAATATCAACTGATCGTCATCCTCGACACGGCCATCGTCAACGCTCGTCGCCGGCGGCCAACATGAAGGGCAGGGGTGATGCAGAGATGTCGACTTGGGATGAGCGCGCCGCAAATAACGACTGGCTCCGGTGGCAGGAGATTTGAAGAATCTTGGCGGCTGATGTCCTCTGCACTGTAATTTTTTTGGAAAGAACCCATTTCTACTTCGTTGATGCCACCGTCTGGCATTCACAGTCATGTAATACTAGTGTTCAAGATGAATGTCTATATATTGTCTCNCCGTGTGTAATTTTCTTTAAAAAa                                                                          ]




>consensus_15101#2
GAAGAGTTGGACCAAATTTCCGGAAGCTGCCGTTGATGGAGGTCAACGCCCCTGCCCTGA
AGCGGTTGGTGTATGAAGTAGAGAAGGACTGCATGAAAGTTCTAAGGTTTTGTGGATCAT
ACTGTGACCATGGCCCGGCGGCTGATATTAAGAAATTGTTCCGAATATCAACTGATCGTC
ATCCTCGACACGGCCATCGTCAACGCTCGTCGCCGGCGGCCAACATGAAGGGCAGGGGTG
ATGCAGAGATGTCGACTTGGGATGAGCGCGCCGCAAATAACGACTGGCTCCGGTGGCAGG
AGATTTGAAGAATCTTGGCGGCTGATGTCCTCTGCACTGTAATTTTTTTGGAAAGAACCC
ATTTCTACTTCGTTGATGCCACCGTCTGGCATTCACAGTCATGTAATACTAGTGTTCAAG
ATGAATGTCTATATATTGTCTCCCGTGTGTAATTTTCTTTAAAAATCATGTGATAGAACC
AAAATACAATTGTCCTGATATCACCATGTTTTTGGTGATCTTAATACTAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15101#1      TGGACTGAAGGAGTAGAAACT----CTCCACTTTTTACGGATCTGCCGTTCCCCTCCCCC 56
consensus_15101#2      ------------------------------------------------------------
consensus_15101#0      ------GAAGGAGTAGAAACTTTCTCTCCACTTTTTACGGATCTGCCGTTCCCCTCCCCC 54
                                                                                   

consensus_15101#1      CGCGCCGCCGCCGCCGCCGTCGAGTCGTGCCCGTATCGGCGTGCGGCTTCGGCAGCGGCA 116
consensus_15101#2      ------------------------------------------------------------
consensus_15101#0      CGCGCCGCCGCCGCCGCCGTCGAGTCGTGCCCGTATCGGCGTGCGGCTTCGGCAGCGGCA 114
                                                                                   

consensus_15101#1      GCGGCAGTTCAGGGATGAGGAGGAGTGGCGGCAAGGCGGATCCAGCGACGGCTCGGAGAC 176
consensus_15101#2      ------------------------------------------------------------
consensus_15101#0      GCGGCAGTTCAGGGATGAGGAGGAGTGGCGGCAAGGCGGATCCAGCGACGGCTCGGAGAC 174
                                                                                   

consensus_15101#1      GAGGAGGTTCGGGCGGTGGATCCGGTGATGCCGAGGCGCGTGGGTGCCGGATCTAGTAGC 236
consensus_15101#2      ------------------------------------------------------------
consensus_15101#0      GAGGAGGTTCGGGCGGTGGATCCGGTGATGCCGAGGCGCGTGGGTGCCGGATCTAGTAGC 234
                                                                                   

consensus_15101#1      GTCGGCGTCGTCCTTCGCTCTGCCTCTGCTTCGTCAACTACTCGGCCGGCAGTGGCGATG 296
consensus_15101#2      ------------------------------------------------------------
consensus_15101#0      GTCGGCGTCGTCCTTCGCTCTGCCTCTGCTTCGTCAACTACTCGGCCGGCAGTGGCGATG 294
                                                                                   

consensus_15101#1      TCACAGAGGATCCCCTCTCCAGCTAGAGGGNAGGATGGGCGCCACCCATGAACCGGCGAC 356
consensus_15101#2      ------------------------------------------------------------
consensus_15101#0      TCACAGAGGATCCCCTCTCCAGCTAGAGGGA-GGATGGGCGCCACCCATGAACCGGCGAC 353
                                                                                   

consensus_15101#1      GGGATGGGT--------------------------------------------------- 365
consensus_15101#2      ------------------------------------------------------------
consensus_15101#0      GGGATGGGTGGGGATGCATCCAGCGCCCCGACTGCTCCTTGCCGACGACAGCCGCTGCCC 413
                                                                                   

consensus_15101#1      ------------------------CATGCCGGCGGCCGCCCCCACTGTTCCCTCGCTTTG 401
consensus_15101#2      -----------------------------------------------------------G 1
consensus_15101#0      TGACCGCTTCCTCGCCGTGCAGGTCATGCCGGCGGCCGCCCCCACTGTTCCCTCGCTTTG 473
                                                                                  *

consensus_15101#1      AAGAGTTGGACCAAATTTCCGGAAGCTGCCGTTGATGGAGGTCAACGCCC-TGCCCTGAA 460
consensus_15101#2      AAGAGTTGGACCAAATTTCCGGAAGCTGCCGTTGATGGAGGTCAACGCCCCTGCCCTGAA 61
consensus_15101#0      AAGAGTTGGACCAAATTTCCGGAAGCTGCCGTTGATGGAGGTCAACGCCC-TGCCCTGAA 532
                       ************************************************** *********

consensus_15101#1      GCGGTTGGTGTATGAAGTANAGAAGGACTGCATGAAAGTTCTAAGGTTTTGTGGATCATA 520
consensus_15101#2      GCGGTTGGTGTATGAAGTAGAGAAGGACTGCATGAAAGTTCTAAGGTTTTGTGGATCATA 121
consensus_15101#0      GCGGTTGGTGTATGAAGTAGAGAAGGACTGCATGAAAGTTCTAAGGTTTTGTGGATCATA 592
                       ******************* ****************************************

consensus_15101#1      CTGTGACCATGGCCCGGCGGCTGATATTAAGAAATTGTTCCGAATATCAACTGATCGTCA 580
consensus_15101#2      CTGTGACCATGGCCCGGCGGCTGATATTAAGAAATTGTTCCGAATATCAACTGATCGTCA 181
consensus_15101#0      CTGTGACCATGGCCCGGCGGCTGATATTAAGAAATTGTTCCGAATATCAACTGATCGTCA 652
                       ************************************************************

consensus_15101#1      TCCTCGACACGGCCATCGTCAACGCTCGTCGCCGGCGGCCAACATGAAGGGCAGGGGTGA 640
consensus_15101#2      TCCTCGACACGGCCATCGTCAACGCTCGTCGCCGGCGGCCAACATGAAGGGCAGGGGTGA 241
consensus_15101#0      TCCTCGACACGGCCATCGTCAACGCTCGTCGCCGGCGGCCAACATGAAGGGCAGGGGTGA 712
                       ************************************************************

consensus_15101#1      TGCAGAGATGTCGACTTGGGATGAGCGCGCCGCAAATAACGACTGGCTCCGGTGGCAGGA 700
consensus_15101#2      TGCAGAGATGTCGACTTGGGATGAGCGCGCCGCAAATAACGACTGGCTCCGGTGGCAGGA 301
consensus_15101#0      TGCAGAGATGTCGACTTGGGATGAGCGCGCCGCAAATAACGACTGGCTCCGGTGGCAGGA 772
                       ************************************************************

consensus_15101#1      GATTTGAAGAATCTTGGCGGCTGATGTCCTCTGCACTGTAATTTTTTTGGAAAGAACCCA 760
consensus_15101#2      GATTTGAAGAATCTTGGCGGCTGATGTCCTCTGCACTGTAATTTTTTTGGAAAGAACCCA 361
consensus_15101#0      GATTTGAAGAATCTTGGCGGCTGATGTCCTCTGCACTGTAATTTTTTTGGAAAGAACCCA 832
                       ************************************************************

consensus_15101#1      TTTCTACTTCGTTGATGCCACCGTCTGGCATTCACAGTCATGTAATACTAGTGTTCAAGA 820
consensus_15101#2      TTTCTACTTCGTTGATGCCACCGTCTGGCATTCACAGTCATGTAATACTAGTGTTCAAGA 421
consensus_15101#0      TTTCTACTTCGTTGATGCCACCGTCTGGCATTCACAGTCATGTAATACTAGTGTTCAAGA 892
                       ************************************************************

consensus_15101#1      TGAATGTCTATATATTGTCTCCCGTGTGTAATTTTCTTTACTGGTCATGTGATAGAACCA 880
consensus_15101#2      TGAATGTCTATATATTGTCTCCCGTGTGTAATTTTCTTTAAAAATCATGTGATAGAACCA 481
consensus_15101#0      TGAATGTCTATAAAAAATCTCCCGTGTGTAATTTTCTTTAAAAAAAAAATTTTTTAAAAA 952
                       ************ *   ***********************      *  *  *  **  *

consensus_15101#1      AAATACAATTGTCCTGATATCACCATGTTTTTGGTGATCTTAATACTATTCGTAAAGATA 940
consensus_15101#2      AAATACAATTGTCCTGATATCACCATGTTTTTGGTGATCTTAATACTAAAAAAAAAAAA- 540
consensus_15101#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1012
                       *** * **        * *  *  *           *    ** *  *     *** *  

consensus_15101#1      TTACTGAAGAGATTAAAATTATAAAAAAAAAAAAAAAAAAAAAAAAAA 988
consensus_15101#2      ------------------------------------------------
consensus_15101#0      AAAAAA------------------------------------------ 1018