cluster # 15108

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Oryza sativa
cluster # 15108 cluster # 15108 Sequences # 20 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_15108#0 length = 1346 sequences # 6

consensus_15108#1 length = 1037 sequences # 9
consensus_15108#2 length = 643 sequences # 5

consensusID : consensus_15108#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1346
fasta sequence

                              [GCTGCACAATCGACCTCCGCCTCCCCAATCCATCCCGTCTCGTCGCCCGCCGCCGTCGACGACTCCCGTCTCCTCCGCCTGCCGCCGGCGCCGATCTCCATCCTGCTAGCAGAGGTGGCGCCGGCGTTCTCCTGCTCCCGCCGCATCATCGCTCACCGGTGAGCATCCTAATCCATCCCGTCCGGCCTCGAATTTCGGTCTCCTCGCCCGCCGCTTGTGCCGAACCACCCCAATCCGGCGAGCAGAGGTCGGCGCCCGTGGTCCTCCTGCAGTCCTGCTTCCGCCGCATCGTCGCTCGCCTGTGAGCATCCTTCATAAGGTATTTTGTGTTTTTCTCGAGACATCGAACCAGCCTCGTCGTCGCCGGCGACCGCCGCCGAGGATGCCGGTGAGGGTGGCAGACACCGCAACCCCTTCCTCCCAGCCCTCATCAGGTCAAGATGCAAATGCTGGGCATCCGTCTCCTCCTAGCTGTTCCCTCTTAAGTGCTGGAAGATGTTATGCTGGAACCCAAAATGTCTCTAATATACAAAAAGAAGAAGCTTGGAAAGTTAATGTGCGGATCCATGGCTGTGATCTTGAACAGGGTTATTTATGTGGAACAATGGAAGCACTTAATGTTCCCTTAGCTGATACCCCTGTGGTAACGTTCTGGGAGGGGGAGATAGTGGATGCTAAAAATTATACATTTTTCACTGGCAAGTGGGAAGCATCCCCAGAGGATGATATTAGACACTGGTCCAAGTTCCCATCATTTACGCCTCTTCTGAGTCAGATTGAGACAGATGGTGGCAAGTCCGTGGACCTCAGCAACTATGCTTACATATTCATGAGATGGAAAGAGCAGTACTTTGTCAATGTTGGAGTGGACTGTGGGTTGACCATAGCTGGTTTCTACTATGTCTGCTTTTCATGTAGCGACGGTTCCATTAGCGGGTATTATTATGATCCAAACAGCAGTCCGTTTCAGAAGCTTGAACTGAAGTGTACCAATGAGAAAGATTCTGGATTTACCTTTTCGTCCTACGAGCTGCAGTGAGAGACTGACAGGCCTGCTGTCATTATAGTATGTGCGGATGTTAATATACACAATGTATGTACTGAACTCATAATTCTGAATGGTGTCCCATTAAAAGGGCTGAGATGGCATGTTTGTAACA-GTGATTTGGAGCCAG-ATGTATTTTATTTTCTTTGTAATATGAATATAAGCTGGTAAACTTTCTAGTTTGAACTACTTGTGTGTTCTCTTTGTGCTAATCATGGCATGGTTATGTCCAAAATAAATAAGACAAGAATGTGAGGGCTAGTTGCTCGTTCAAAGAAATATATACTTCTTTCCAAAAAAA]

[+] EMBL CF328919             [GCTGCACAATCGACCTCCGCCTCCCCAATCCATCCCGTCTCGTCGCCCGCCGCCGTCGACGACTCCCGTCTCCTCCGCCTGCCGCCGGCGCCGATCTCCATCCTGCTAGCAGAGGTGGCGCCGGCGTTCTCCTGCTCCCGCCGCATCATCGCTCACCGGTGAGCATCCTAATCCATCCCGTCCGGCCTCGAATTTCGGTCTCCTCGCCCGCCGCTTGTGCCGAACCACCCCAATCCGGCGAGCAGAGGTCGGCGCCCGTGGTCCTCCTGCAGTCCTGCTTCCGCCGCATCGTCGCTCGCCTGTGAGCATCCTTCATAAGGTATTTTGTGTTTTTCTCGAGACATCGAACCAGCCTCGTCGTCGCCGGCGACCGCCGCCGAGGATGCCGGTGAGGGTGGCAGACACCGCAACCCCTTCCTCCCAGCCCTCATCAGGTCAAGATGCAAATGCTGGGCATCCGTCTCCTCCTAGCTGTTCCCTCTTAAGTGCTGGAAGATGTTATGCTGGAACCCAAAATGTCTCTAATATACAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AK059913             [    CACAATCGACCTCCGCCTCCCCAATCCATCCCGTCTCGTCGCCCGCCGCCGTCGACGACTCCCGTCTCCTCCGCCTGCCGCCGGCGCCGATCTCCATCCTGCTAGCAGAGGTGGCGCCGGCGTTCTCCTGCTCCCGCCGCATCATCGCTCACCGGTGAGCATCCTAATCCATCCCGTCCGGCCTCGAATTTCGGTCTCCTCGCCCGCCGCTTGTGCCGAACCACCCCAATCCGGCGAGCAGAGGTCGGCGCCCGTGGTCCTCCTGCAGTCCTGCTTCCGCCGCATCGTCGCTCGCCTGTGAGCATCCTTCATAAGGTATTTTGTGTTTTTCTCGAGACATCGAACCAGCCTCGTCGTCGCCGGCGACCGCCGCCGAGGATGCCGGTGAGGGTGGTAGACACCGCAACCCCTTCCTCCCAGCCCTCATCAGGTCAAGATGCAAATGCTGGGCATCCGTCTCCTCCTAGCTGTTCCCTCTTAAGTGCTGGAAGATGTTATGCTGGAACCCAGAATGTCTCTAATATACAAAAAGAAGAAGCTTGGAAAGTTAATGTGCGGATCCATGGCTGTGATCTTGAACAGGGTTATTTATGTGGAACAATGGAAGCACTTAATGTTCCCTTAGCTGATACCCCTGTGGTAACGTTCTGGGAGGGGGAGATAGTGGATGCTAAAAATTATACATTTTTCACTGGCAAGTGGGAAGCATCCCCAGAGGATGATATTAGACACTGGTCCAAGTTCCCATCATTTACGCCTCTTCTGAGTCAGATTGAGACAGATGGTGGCAAGTCCGTGGACCTCAGCAACTATGCTTACATATTCATGAGATGGAAAGAGCAGTACTTTGTCAATGTTGGAGTGGACTGTGGGTTGACCATAGCTGGTTTCTACTATGTCTGCTTTTCATGTAGCGACGGTTCCATTAGCGGGTATTATTATGATCCAAACAGCAGTCCGTTTCAGAAGCTTGAACTGAAGTGTACCAATGAGAAAGATTCTGGATTTACCTTTTCGTCCTACGAGCTGCAGTGAGAGACTGACAGGCCTGCTGTCATTATAGTATGTGCGGATGTTAATATACACAATGTATGTACTGAACTCATAATTCTGAATGGTGTCCCATTAAAAGGGCTGAGATGGCATGTTTGTAACA GTGATTTGGAGCAAG ATGTATTTTATTTTCTTTGTAATATGAATATAAGCTGGTAAACTTTCT                                                                                                                           ]
[+] EMBL C72807               [                                          TCGCCCGCCGCCGTCGACGACTCCCGTCTCCTCCGCCTGCCGCCGGCGCCGATCTCCATCCTGCTAGCAGAGGTGGCGCCGGCGTTCTCCTGCTCCCGCCGCATCATCGCTCACCGGTGAGCATCCTAATCCATCCCGTCCGGCCTCGAATTTCGGTCTCCTCGCCCGCCGCTTGTGCCGAACCACCCCAATCCGGCGAGCAGAGGTCGGCGCCCGTGGTCCTCCTGCAGTCCTGCTTCCGCCGCATCGTCGCTCGCCTGTGAGCATCCTTCATAAGGTATTTTGTGTTTTTCTCGAGACATCGAACCAGCNTCGTCGTCGCCGGCGAACG CGCCGAGGATGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CF331147             [                                                                                                         CTAGCAGAGGTGGCGCCGGCGTTCTCCTGCTCCCGCCGCATCATCGCTCACCGGTGAGCATCCTAATCCATCCCGTCCGGCCTCGAATTTCGGTCTCCTCGCCCGCCGCTTGTGCCGAACCACCCCAATCCGGCGAGCAGAGGTCGGCGCCCTTGGTCCTCCTGCAGTCCTGCTTCCGCCGCATCGTCGCTCGCCTGTGAGCATCCTTCATAAGGTATTTTGTGTTTTTCTCGAGACATCGAACCAGCCTCGTCGTCGCCGGCGACCGCCGTCGAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CF331148             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TGGTAACGTTCTGGGAGGGGGAGATAGTGGATGCTAAAAATTATACATTTTTCACTGGCAAGTGGGAAGCATCCCCAGAGGATGATATTAGACACTGGTCCAAGTTCCCATCATTTACGCCTCTTCTGAGTCAGATTGAGACAGATGGTGGCAAGTCCGTGGACCTCAGCAACTATGCTTACATATTCATGAGATGGAAAGAGCAGTACTTTGTCAATGTTGGAGTGGACTGTGGGTTGACCATAGCTGGTTTCTACTATGTCTGCTTTTCATGTAGCGACGGTTCCATTAGCGGGTATTATTATGATCCAAACAGCAGTCCGTTTCAGAAGCTTGAACTGAAGTGTACCAATGAGAAAGATTCTGGATTTACCTTTTCGTCCTACGAGCTGCAGTGAGAGACTGACAGGCCTGCTGTCATTATAGTATGTGCGGATGTTAATATACACAATGTATGTACTGAACTCATAATTCTGTATGGTGTCCCATTAAAAGGGCTGAGATGGCATGTTTGTAACA GTGATTTGGAGCCAGAATGTATTTTATTTTCTTTGTAAaaaa                                                                                                                                                 ]
[+] EMBL BI800684             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GAGTGGACTGT GGTTGACCATA CTGGTTTCTACTATGTCTGCTTTTCATGTAGCGACGGTTCCATTAGCGGGTATTATTATGATCCCAACA CAGTCCGTTTCAGAAGCTTGAACTGAAGTGTACCAATGAGAAAGATTCTGGATTTACCTTTTCGTCCTACGAGCTGCAGTGAGAGACTGACAGGCCTGCTGTCATTATAGTATGTGCGGATGTTAATATACAC ATGTATGTACTGAACTCATAATTCTGAATGGTGTCCCATTAAAAGGGCTGAGATGGCATGTTTGTAACACGTGATTTGGAGCCAG ATGTATTTTATTTTCTTTGTAATATGAATATAAGCTGGTAAACTTTCTAGTTTGAACTACTTGTGTGTTCTCTTTGTGCTAATCATGGCATGGTTATGTCCAAAATAAATAAGACAAGAATGTGAGGGCTAGTTGCTCGTTCAAAGAAATATATACTTCTTTCCAAAAAAA]




>consensus_15108#0
GCTGCACAATCGACCTCCGCCTCCCCAATCCATCCCGTCTCGTCGCCCGCCGCCGTCGAC
GACTCCCGTCTCCTCCGCCTGCCGCCGGCGCCGATCTCCATCCTGCTAGCAGAGGTGGCG
CCGGCGTTCTCCTGCTCCCGCCGCATCATCGCTCACCGGTGAGCATCCTAATCCATCCCG
TCCGGCCTCGAATTTCGGTCTCCTCGCCCGCCGCTTGTGCCGAACCACCCCAATCCGGCG
AGCAGAGGTCGGCGCCCGTGGTCCTCCTGCAGTCCTGCTTCCGCCGCATCGTCGCTCGCC
TGTGAGCATCCTTCATAAGGTATTTTGTGTTTTTCTCGAGACATCGAACCAGCCTCGTCG
TCGCCGGCGACCGCCGCCGAGGATGCCGGTGAGGGTGGCAGACACCGCAACCCCTTCCTC
CCAGCCCTCATCAGGTCAAGATGCAAATGCTGGGCATCCGTCTCCTCCTAGCTGTTCCCT
CTTAAGTGCTGGAAGATGTTATGCTGGAACCCAAAATGTCTCTAATATACAAAAAGAAGA
AGCTTGGAAAGTTAATGTGCGGATCCATGGCTGTGATCTTGAACAGGGTTATTTATGTGG
AACAATGGAAGCACTTAATGTTCCCTTAGCTGATACCCCTGTGGTAACGTTCTGGGAGGG
GGAGATAGTGGATGCTAAAAATTATACATTTTTCACTGGCAAGTGGGAAGCATCCCCAGA
GGATGATATTAGACACTGGTCCAAGTTCCCATCATTTACGCCTCTTCTGAGTCAGATTGA
GACAGATGGTGGCAAGTCCGTGGACCTCAGCAACTATGCTTACATATTCATGAGATGGAA
AGAGCAGTACTTTGTCAATGTTGGAGTGGACTGTGGGTTGACCATAGCTGGTTTCTACTA
TGTCTGCTTTTCATGTAGCGACGGTTCCATTAGCGGGTATTATTATGATCCAAACAGCAG
TCCGTTTCAGAAGCTTGAACTGAAGTGTACCAATGAGAAAGATTCTGGATTTACCTTTTC
GTCCTACGAGCTGCAGTGAGAGACTGACAGGCCTGCTGTCATTATAGTATGTGCGGATGT
TAATATACACAATGTATGTACTGAACTCATAATTCTGAATGGTGTCCCATTAAAAGGGCT
GAGATGGCATGTTTGTAACAGTGATTTGGAGCCAGATGTATTTTATTTTCTTTGTAATAT
GAATATAAGCTGGTAAACTTTCTAGTTTGAACTACTTGTGTGTTCTCTTTGTGCTAATCA
TGGCATGGTTATGTCCAAAATAAATAAGACAAGAATGTGAGGGCTAGTTGCTCGTTCAAA
GAAATATATACTTCTTTCCAAAAAAA

consensusID : consensus_15108#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1037
fasta sequence

                              [CTTTACGAACAAATCCCTATCCTGCATACCGCCATCGTCTCTTTCTCGTCGTCGCCGGCGACGCCTCCCGCCGCCGCCGAGGATGCCAGTGAGGGTGGTCGACACCGCAACCCCATCCTCCCAGCCCACCTCAGGTCAAGATGCAAATGCTGGGCATCCGTCTCCTCCTAGCTGTTCCCTCTTAAGTGCTGGAAGATGTTATGCTGGAACCCAGAATGTCTCTACTATACAAAAAGAAGAAGCTTGGAAAGTTAATGTGCGGATCAATGACTGTGATCTTGAACAGGGTTATTTATGTGGAACAATGGAAGCAGTTAATGTTCCCTTAGCTGATACCCCTGTGGTAACATTCTGGGAGGGGGAGATAGTGGATGCTAAAAATTATACATTTTTCACTGGCAAGTGGGAGGCATCCCCAGAGGATGATATTAGACACTGGTCCAAGTTCCCATCATTTACACCTCTTCTGAGTCAGATAGAGACAGATGGTGGCAAGTCTGTGGACTTCAGCAACTATGCTTACATATTCATGAGATGGAAAGAGCAGTACTTTGTCAATGTTGGAGTGGACTGTGGGTTGACCATAGCTGGTTTCTACTATGTCTGCTTTTCATGTAGCGATGGTTCCATTAGCGGGTATTATTATGATCCAAACAGCAGTCCGTTTCAGAAGCTTGAACTGAAGTGTACCAATGAGAAAGATTCTGGATTTACCTTTTCATCCTACGAGCTGCAGTGAGAGACTGACAGGCCTGTTGTCATTATAGTATTTGCGGATGTTAATATACACAATGTGTGTACTGAACTCATAATTTTGAATGGCGTCCCATTAAAAGAGCTGAGATGGCATGTTTGTAACAGTGATTTTGAGCAAGATGTATTTTATTCTCTTTGTAATATGATTATAAGCTGGTAAAATTTCTAATTTGAACCAAAAAAAATGTTCTTTTTGTGCTAATCACGGCATGGTTATGTCCAGAATAAATAAGACAAGAATGTGAGGGCTAGTTGCTCGTTCAAAGAAATATATATACTTC]

[+] EMBL AK059740             [CTTTACGAACAAATCCCTATCCTGCATACCGCCATCGTCTCTTTCTCGTCGTCGCCGGCGACGCCTCCCGCCGCCGCCGAGGATGCCAGTGAGGGTGGTCGACACCGCAACCCCATCCTCCCAGCCCACCTCAGGTCAAGATGCAAATGCTGGGCATCCGTCTCCTCCTAGCTGTTCCCTCTTAAGTGCTGGAAGATGTTATGCTGGAACCCAGAATGTCTCTACTATACAAAAAGAAGAAGCTTGGAAAGTTAATGTGCGGATCAATGACTGTGATCTTGAACAGGGTTATTTATGTGGAACAATGGAAGCAGTTAATGTTCCCTTAGCTGATACCCCTGTGGTAACATTCTGGGAGGGGGAGATAGTGGATGCTAAAAATTATACATTTTTCACTGGCAAGTGGGAGGCATCCCCAGAGGATGATATTAGACACTGGTCCAAGTTCCCATCATTTACACCTCTTCTGAGTCAGATAGAGACAGATGGTGGCAAGTCTGTGGACTTCAGCAACTATGCTTACATATTCATGAGATGGAAAGAGCAGTACTTTGTCAATGTTGGAGTGGACTGTGGGTTGACCATAGCTGGTTTCTACTATGTCTGCTTTTCATGTAGCGATGGTTCCATTAGCGGGTATTATTATGATCCAAACAGCAGTCCGTTTCAGAAGCTTGAACTGAAGTGTACCAATGAGAAAGATTCTGGATTTACCTTTTCATCCTACGAGCTGCAGTGAGAGACTGACAGGCCTGTTGTCATTATAGTATTTGCGGATGTTAATATACACAATGTGTGTACTGAACTCATAATTTTGAATGGCGTCCCATTAAAAGAGCTGAGATGGCATGTTTGTAACAGTGATTTTGAGCAAGATGTATTTTATTCTCTTTGTAATATGATTATAAGCTGGTAAAATTTCTAATTTGAACCTACCTGTGTGTTCTTTTTGTGCTAATCACGGCATGGTTATGTCCAGAATAAATAAGACAAGAATGTGAGGGCTAGTTGCTCGTTCAAAGAAATATATATACTTC]
[+] EMBL CF316051             [                        CATACCGCCATCGTCTCTTTCTCGTCGTCGCCGGCGACGCCTCCCGCCGCCGCCGAGGATGCCAGTGAGGGTGGTCGACACCGCAACCCCATCCTCCCAGCCCACCTCAGGTCAAGATGCAAATGCTGGGCGTCCGTCTCCTCCTAGCTGTTCCCTCTTAAGTGCTGGAAGATGTTATGCTGGAACCCAGAATGTCTCTACTATACAAAAAGAAGAAGCTTGGAAAGTTAATGTGCGGATCAATGACTGTGATCTTGAACAGGGTTATTTATGTGGAACAATGGAAGCAGTTAATGTTCCCTTAGCTGATACCCCTGTGGTAACATTCTGGGAGGGGGAGATAGTGGATGCTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CF277544             [                                                TCGTCGCCGGCGACGCCTCCCGCCGCCGCCGAGGATGCCAGTGAGGGTGGTCGACACCGCAACCCCATCCTCCCAGCCCACCTCAGGTCAAGATGCAAATGCTGGGCATCCGTCTCCTCCTAGCTGTTCCCTCTTAAGTGCTGGAAGATGTTATGCTGGAACCCAGAATGTCTCTACTATACAAAAAGAAGAAGCTTGGAAAGTTAATGTGCGGATCAATGACTGTGATCTTGAACAGGGTTATTTATGTGGAACAATGGAAGCAGTTAATGTTCCCTTAGCTGATACCCCTGTGGTAACATTCTGGGAGGGGGAGATAGTGGATGCTAAAAATTATACATTTTTCACTGGCAAGTGGGAGGCATCCCCAGAGGATGATATTAGACACTGGTCCAAGTTCCCATCATTTACACCTCTTCTGAGTCAGATAGAGACAGATGGTGGCAAGTCTGTGGACTTCAGCAACTATGCTTACATATTCATGAGATGGAAAGAGCAGTACTTTGTCAATGTTGGAGTGGACTGTGGGTTGACCATAGCTGGTTTCTACTATGTCTGCTTTTCATGTAGCGATGGTTCCATTAGCGGGTATTATTATGATCCAAACAGCAGTCCGTTTCAGAAGCTTGAACTGAAG                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CF276361             [                                                                                                                                                                                                                                                                    GGATCAATGACTGTGATCTTGAACAGGGTTATTTATGTGGAACAATGGAAGCAGTTAATGTTCCCTTAGCTGATACCCCTGTGGTAACATTCTGGGAGGGGGAGATAGTGGATGCTAAAAATTATACATTTTTCACTGGCAAGTGGGAGGCATCCCCAGAGGATGATATTAGACACTGGTCCAAGTTCCCATCATTTACACCTCTTCTGAGTCAGATAGAGACAGATGGTGGCAAGTCTGTGGACTTCAGCAACTATGCTTACATATTCATGAGATGGAAAGAGCAGTACTTTGTCAATGTTGGAGTGGACTGTGGGTTGACCATAGCTGGTTTCTACTATGTCTGCTTTTCATGTAGCGATGGTTCCATTAGCGGGTATTATTATGATCCAAACAGCAGTCCGTTTCAGAAGCTTGAACTGAAGTGTACCAATGAGAAAGATTCTGGATTTACCTTTTCATCCTACGAGCTGCAGTGAGAGACTGACAGGCCTGTTGTCATTATAGTATTTGCGGATGTTAATATACACAATGTGTGTACTGAACTCATAATTTTGAATGGCGTCCCATTAAAAGAGCTGAGATGGCATGTTTGTAACAGTGATTTTGAGCAAGATGTATTTTATTCTCTTTGTAATATGATTATAAGCTGGTAAAATTTCTAATTTGAACCTAAAAAA                                                                                                 ]
[-] EMBL CF317520             [                                                                                                                                                                                                                                                                                                                                                                                                                                  GAGGATGATATTAGACACTGGTCCAAGTTCCCATCATTTACACCTCTTCTGAGTCAGATAGAGACAGATGGTGGCAAGTCTGTGGACTTCAGCAACTATGCTTACATATTCATGAGATGGAAAGAGCAGTACTTTGTCAATGTTGGAGTGGACTGTGGGTTGACCATAGCTGGTTTCTACTATGTCTGCTTTTCATGTAGCGATGGTTCCATTAGCGGGTATTATTATGATCCAAACAGCAGTCCGTTTCAGAAGCTTGAACTGAAGTGTACCAATGAGAAAGATTCCGGATTTACCTTTTCATCCTACGAGCTGCAGTGAGAGACTGACAGGCCTGTTGTCATTATAGTATTTGCGGATGTTAATATACACAATGTGTGTACTGAACTCATAATTTTGAATGGCGTCCCATTAAAAGAGCTGAGATGGCATGTTTGTAACAGTGATTTTGAGCAAGATGTATTTTATTCTCTTTGTAATATGATTATAAGCTGGTAAAATTTCTAATTTGAACCAAAAAA                                                                                                  ]
[-] EMBL CF335500             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GAGACAGATGGTGGCAAGTCTGTGGACTTCAGCAACTATGCTTACATATTCATGAGATGGAAAGAGCAGTACTTTGTCAATGTTGGAGTGGACTGTGGGTTGACCATAGCTGGTTTCTACTATGTCTGCTTTTCATGTAGCGATGGTTCCATTAGCGGGTATTATTATGATCCAAACAGCAGTCCGTTTCAGAAGCTTGAACTGAAGTGTACCAATGAGAAAGATTCTGGATTTACCTTTTCATCCTACGAGCTGCAGTGAGAGACTGACAGGCCTGTTGTCATTATAGTATTTGCGGATGTTAATATACACAATGTGTGTACTGAACTCATAATTTTGAATGGCGTCCCATTAAAAGAGCTGAGATGGCATGTTTGTAACAGTGATTTTGAGCAAGATGTATTTTATTCTCTTTGTAATATGATTATAAGCTGGTAAAATTTCTAATTTGACCCAAAAAAAAa                                                                                               ]
[-] EMBL CF277545             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TGAGATGGAAAGAGCAGTACTTTGTCAATGTTGGAGTGGACTGTGGGTTGACCATAGCTGGTTTCTACTATGTCTGCTTTTCATGTAGCGATGGTTCCATTAGCGGGTATTATTATGATCCAAACAGCAGTCCGTTTCAGAAGCTTGAACTGAAGTGTACCAATGAGAAAGATTCTGGATTTACCTTTTCATCCTACGAGCTGCAGTGAGAGACTGACAGGCCTGTTGTCATTATAGTATTTGCGGATGTTAATATACACAGTGTGTGTACTGAACTCATAATTTTGAATGGCGTCCCATTAAAAGAGCTGAGATGGCATGTTTGTAACAGTGATTTTGAGCAAGATGTATTTTATTCTCTTTGTAATATGATTATAAGCGGGTAAAATTTCTAATTTGACCCAAAAAAAA                                                                                                ]
[-] EMBL CF294267             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GAGTGGGCTGTGGGTTGACCATAGCTGGTTTGGCCTATGTGTGCTTTTCATGTAGCGATGGTTCCATTAGCGGGTATTATTATGATCCAAACAGCAGTCCGTTTCAGAAGCTTGAACTGAAGTGTACCAATGAGAAAGATTCTGGATTTACCTTTTCATCCTACGAGCTGCAGAAAGAAACTGACAGGCCTGTTGTCAAAATAGTATTTGCGGATGTTAAAATACACAGTGTGTGTACTGAACTCATAATTTTGAATGGCGTCCCATTAAAAGAGCTGAGATGG                                                                                                                                                                                              ]
[-] EMBL CF279345             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ACTGAACTCATAATTTTGAATGGCGTCCCATTAAAAGAGCTGAGATGGCATGTTTGTAACAGTGATTTTGAGCAAGATGTATTTTATTCTCTTTGTAATATGATTATAAGCTGGTAAAATTTCTAATTTGACCCAAAAAAAA                                                                                                ]




>consensus_15108#1
CTTTACGAACAAATCCCTATCCTGCATACCGCCATCGTCTCTTTCTCGTCGTCGCCGGCG
ACGCCTCCCGCCGCCGCCGAGGATGCCAGTGAGGGTGGTCGACACCGCAACCCCATCCTC
CCAGCCCACCTCAGGTCAAGATGCAAATGCTGGGCATCCGTCTCCTCCTAGCTGTTCCCT
CTTAAGTGCTGGAAGATGTTATGCTGGAACCCAGAATGTCTCTACTATACAAAAAGAAGA
AGCTTGGAAAGTTAATGTGCGGATCAATGACTGTGATCTTGAACAGGGTTATTTATGTGG
AACAATGGAAGCAGTTAATGTTCCCTTAGCTGATACCCCTGTGGTAACATTCTGGGAGGG
GGAGATAGTGGATGCTAAAAATTATACATTTTTCACTGGCAAGTGGGAGGCATCCCCAGA
GGATGATATTAGACACTGGTCCAAGTTCCCATCATTTACACCTCTTCTGAGTCAGATAGA
GACAGATGGTGGCAAGTCTGTGGACTTCAGCAACTATGCTTACATATTCATGAGATGGAA
AGAGCAGTACTTTGTCAATGTTGGAGTGGACTGTGGGTTGACCATAGCTGGTTTCTACTA
TGTCTGCTTTTCATGTAGCGATGGTTCCATTAGCGGGTATTATTATGATCCAAACAGCAG
TCCGTTTCAGAAGCTTGAACTGAAGTGTACCAATGAGAAAGATTCTGGATTTACCTTTTC
ATCCTACGAGCTGCAGTGAGAGACTGACAGGCCTGTTGTCATTATAGTATTTGCGGATGT
TAATATACACAATGTGTGTACTGAACTCATAATTTTGAATGGCGTCCCATTAAAAGAGCT
GAGATGGCATGTTTGTAACAGTGATTTTGAGCAAGATGTATTTTATTCTCTTTGTAATAT
GATTATAAGCTGGTAAAATTTCTAATTTGAACCAAAAAAAATGTTCTTTTTGTGCTAATC
ACGGCATGGTTATGTCCAGAATAAATAAGACAAGAATGTGAGGGCTAGTTGCTCGTTCAA
AGAAATATATATACTTC

consensusID : consensus_15108#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 643
fasta sequence

                              [CAGTGGCCTGAAGGAGTAGACTAGTCTCTTTCTCGTCGTCGCCGGCGACGCCTCCCGCCGCCGCCGAGGATGCCAGTGAGGGTGGTCGACACCGCAACCCCATCCTCCCAGCCCACCTCAGGTCAAGATGCAAATGCTGGGCATCCGTCTCCTCCTAGCTGTTCCCTCTTAAGTGCTGGAAGATGTTATGCTGGAACCCAGAATGTCTCTACTATACAAAAAGAAGAAGCTTGGAAAGTTAATGTGCGGATCAATGACTGTGATCTTGAACAGGGTTATTTATGTGGAACAATGGAAGCAGTTAATGTTCCCTTAGCTGATACCCCTGTGGTAACATTCTGGGAGGGGGAGATAGTGGATGCTAAAAATTATACATTTTTCACTGGCAAGTGGGAGGCATCCCCAGAGGATGATATTAGACACTGGTCCAAGTTCCCATCATTTACACCTCTTCTGAGTCAGATAGAGACAGATGGTGGCAAGTCTGTGGACTTCAGCAACTATGCTTACATATTCATGAGATGGAAAGAGCAGTACTTTGTCAATGTTGGAGTGGACTGTGGGTTGACCATAGCTGGTTTCTACTATGTCTGCTTTTCATGTAGCGATGGTTCCATTAGCGGGTATTATTATGATCCAAACA]

[+] EMBL CF335499             [CAGTGGCCTGAAGGAGTAGACTAGTCTCTTTCTCGTCGTCGCCGGCGACGCCTCCCGCCGCCGCCGAGGATGCCAGTGAGGGTGGTCGACACCGCAACCCCATCCTCCCAGCCCACCTCAGGTCAAGATGCAAATGCTGGGCATCCGTCTCCTCCTAGCTGTTCCCTCTTAAGTGCTGGAAGATGTTATGCTGGAACCCAGAATGTCTCTACTATACAAAAAGAAGAAGCTTGGAAAGTTAATGTGCGGATCAATGACTGTGATCTTGAACAGGGTTATTTATGTGGAACAATGGAAGCAGTTAATGTTCCCTTAGCTGATACCCCTGTGGTAACATTCTGGGAGGGGGAGATAGTGGATGCTAAAAATTATACATTTTTCACTGGCAAGTGGGAGGCATCCCCAGAGGATGATATTAGACACTGGTCCAAGTTCCCATCATTTACACCTCTTCTGAGTCAGATAGAGACAGATGGTGGCAAGTCTGTGGACTTCAGCAACTATGCTTACATATTCATGAGATGGAAAGAGCAGTACTTTGTCAATGTTGGAGTGGACTGTGGGTTGACCATAGCTGGTTTCTACTATGTCTGCTTTTCATGTAGCGATGGTTCCATTAGCGGGTATTATTATGATCCAAACA]
[+] EMBL CF336978             [                            TTTCTCGTCGTCGCCGGCGACGCCTCCCGCCGCCGCCGAGGATGCCAGTGAGGGTGGTCGACACCGCAACCCCATCCTCCCAGCCCACCTCAGGTCAAGATGCAAATGCTGGGCATCCGTCTCCTCCTAGCTGTTCCCTCTTAAGTGCTGGAAGATGTTATGCTGGAACCTAGAATGTCTCTACTATACAAAAAGAAGAAGCTTGGAAAGTTAATGTGCGGATCAATGACTGTGATCTTGAACAGGGTTATTTATGTGGAACAATGGAAGCAGTTAATGTTCCCTTAGCTGATACCCCTGTGGTAACATTCTGGGAGGGGGAGATAGTGGATGCTAAAAATTATACATTTTTCACTGGCAAGTGGGAGGCATCCCCAGAGGATGATATTAGACACTGGTCCAAGTTCCCATCATTTACACCTCTTCTGAGTCAGATAGAGACAGATGGTGGCAAGTCTGTGGACTTCAGCAACTATGCTTACATATTCATGAGATGGAAAGAGCAGTACTTTGTCAATGTTGGAGTGGACTGTGGGTTGACCATAGCTGGTTTCTACTATGTCTG                                                  ]
[+] EMBL CF279344             [                                   TCGTCGCCGGCGACGCCTCCCGCCGCCGCCGAGGATGCCAGTGAGGGTGGTCGACACCGCAACCCCATCCTCCCAGCCCACCTCAGGTCAAGATGCAAATGCTGGGCATCCGTCTCCTCCTAGCTGTTCCCTCTTAAGTGCTGGAAGATGTTATGCTGGAACCCAGAATGTCTCTACTATACAAAAAGAAGAAGCTTGGAAAGTTAATGTGCGGATCAATGACTGTGATCTTGAACAGGGTTATTTATGTGGAACAATGGAAGCAGTTAATGTTCCCTTAGCTGATACCCCTGTGGTAACATTCTGGGAGGGGGAGATAGTGGATGCTAAAAATTATACATTTTTCACTGGCAAGTGGGAGGCATCCCCAGAGGATGATATTAGACACTGGTCCAAGTTCCCATCATTTACAC                                                                                                                                                                                                   ]
[+] EMBL CF317434             [                                    CGTCGCCGGCGACGCCTCCCGCCGCCGCCGAGGATGCCAGTGAGGGTGGTCGACACCGCAACCCCATCCTCCCAGCCCACCTCAGGTCAAGATGCAAATGCTGGGCATCCGTCTCCTCCTAGCTGTTCCCTCTTAAGTGCTGGAAGATGTTATGCTGGAACCCAGAATGTCTCTACTATACAAAAAGAAGAAGCTTGGAAAGTTAATGTGCGGATCAATGACTGTGATCTTGAACAGGGTTATTTATGTGGAACAATGGAAGCAGTTAATGTTCCCTTAGCTGATACCCCTGTGGTAACATTCTGGGAGGGGGAGATAGTGGATGCTAAAAATTATACATTTTTCACTGGCAAGTGGGAGGCATCCCCAGAGGATGATATTAGACACTGGTCCAAGTTCCCATCATTTACACCTCTTCTGAGTCAGATAGAGACAGATGGTGGCAAGTCTGTGGACTTCAGCAACTATGCTTACATATTCATGA                                                                                                                           ]
[+] EMBL CF276360             [                                          CGGCGACGCCTCCCGCCGCCGCCGAGGATGCCAGTGAGGGTGGTTGACACCGCAACCCCATCCTCCCAGCCCACCTCANGTCAAGATGCAAATGCTGGGCATCCGTCTCCTCCTAGCTGTTCCCTCTTAAGTGCTGGAAGATGTTATGCTGGAACCCAGAATGTCTCTACTATACAAAAAGAATAAGCTTGTAAAGTTAATGTGCGGATCAATGACTGTGATCT                                                                                                                                                                                                                                                                                                                                                                                         ]




>consensus_15108#2
CAGTGGCCTGAAGGAGTAGACTAGTCTCTTTCTCGTCGTCGCCGGCGACGCCTCCCGCCG
CCGCCGAGGATGCCAGTGAGGGTGGTCGACACCGCAACCCCATCCTCCCAGCCCACCTCA
GGTCAAGATGCAAATGCTGGGCATCCGTCTCCTCCTAGCTGTTCCCTCTTAAGTGCTGGA
AGATGTTATGCTGGAACCCAGAATGTCTCTACTATACAAAAAGAAGAAGCTTGGAAAGTT
AATGTGCGGATCAATGACTGTGATCTTGAACAGGGTTATTTATGTGGAACAATGGAAGCA
GTTAATGTTCCCTTAGCTGATACCCCTGTGGTAACATTCTGGGAGGGGGAGATAGTGGAT
GCTAAAAATTATACATTTTTCACTGGCAAGTGGGAGGCATCCCCAGAGGATGATATTAGA
CACTGGTCCAAGTTCCCATCATTTACACCTCTTCTGAGTCAGATAGAGACAGATGGTGGC
AAGTCTGTGGACTTCAGCAACTATGCTTACATATTCATGAGATGGAAAGAGCAGTACTTT
GTCAATGTTGGAGTGGACTGTGGGTTGACCATAGCTGGTTTCTACTATGTCTGCTTTTCA
TGTAGCGATGGTTCCATTAGCGGGTATTATTATGATCCAAACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15108#1      ------------------------------------------------------------
consensus_15108#2      ------------------------------------------------------------
consensus_15108#0      GCTGCACAATCGACCTCCGCCTCCCCAATCCATCCCGTCTCGTCGCCCGCCGCCGTCGAC 60
                                                                                   

consensus_15108#1      ------------------------------------------------------------
consensus_15108#2      ------------------------------------------------------------
consensus_15108#0      GACTCCCGTCTCCTCCGCCTGCCGCCGGCGCCGATCTCCATCCTGCTAGCAGAGGTGGCG 120
                                                                                   

consensus_15108#1      ------------------------------------------------------------
consensus_15108#2      ------------------------------------------------------------
consensus_15108#0      CCGGCGTTCTCCTGCTCCCGCCGCATCATCGCTCACCGGTGAGCATCCTAATCCATCCCG 180
                                                                                   

consensus_15108#1      ------------------------------------------------------------
consensus_15108#2      ------------------------------------------------------------
consensus_15108#0      TCCGGCCTCGAATTTCGGTCTCCTCGCCCGCCGCTTGTGCCGAACCACCCCAATCCGGCG 240
                                                                                   

consensus_15108#1      -------------------------------------------------CTTTACGAACA 11
consensus_15108#2      ------------------------------------------------------------
consensus_15108#0      AGCAGAGGTCGGCGCCCGTGGTCCTCCTGCAGTCCTGCTTCCGCCGCATCGTCGCTCGCC 300
                                                                                   

consensus_15108#1      AATCCCTATCCTGCAT-ACCGCCATCGTCTCTTTCTCG----------TCGTCGCCGGCG 60
consensus_15108#2      ---CAGTGGCCTGAAGGAGTAGACTAGTCTCTTTCTCG----------TCGTCGCCGGCG 47
consensus_15108#0      TGTGAGCATCCTTCATAAGGTATTTTGTGTTTTTCTCGAGACATCGAACCAGCCTCGTCG 360
                                ***  *  *      * ** * *******           *  *  ** **

consensus_15108#1      ACGCCTCCCGCCGCCGCCGAGGATGCCAGTGAGGGTGGTCGACACCGCAACCCCATCCTC 120
consensus_15108#2      ACGCCTCCCGCCGCCGCCGAGGATGCCAGTGAGGGTGGTCGACACCGCAACCCCATCCTC 107
consensus_15108#0      TCGCCGGCGACCGCCGCCGAGGATGCCGGTGAGGGTGGCAGACACCGCAACCCCTTCCTC 420
                        ****  *  ***************** **********  ************** *****

consensus_15108#1      CCAGCCCACCTCAGGTCAAGATGCAAATGCTGGGCATCCGTCTCCTCCTAGCTGTTCCCT 180
consensus_15108#2      CCAGCCCACCTCAGGTCAAGATGCAAATGCTGGGCATCCGTCTCCTCCTAGCTGTTCCCT 167
consensus_15108#0      CCAGCCCTCATCAGGTCAAGATGCAAATGCTGGGCATCCGTCTCCTCCTAGCTGTTCCCT 480
                       ******* * **************************************************

consensus_15108#1      CTTAAGTGCTGGAAGATGTTATGCTGGAACCCAGAATGTCTCTACTATACAAAAAGAAGA 240
consensus_15108#2      CTTAAGTGCTGGAAGATGTTATGCTGGAACCCAGAATGTCTCTACTATACAAAAAGAAGA 227
consensus_15108#0      CTTAAGTGCTGGAAGATGTTATGCTGGAACCCAAAATGTCTCTAATATACAAAAAGAAGA 540
                       ********************************* ********** ***************

consensus_15108#1      AGCTTGGAAAGTTAATGTGCGGATCAATGACTGTGATCTTGAACAGGGTTATTTATGTGG 300
consensus_15108#2      AGCTTGGAAAGTTAATGTGCGGATCAATGACTGTGATCTTGAACAGGGTTATTTATGTGG 287
consensus_15108#0      AGCTTGGAAAGTTAATGTGCGGATCCATGGCTGTGATCTTGAACAGGGTTATTTATGTGG 600
                       ************************* *** ******************************

consensus_15108#1      AACAATGGAAGCAGTTAATGTTCCCTTAGCTGATACCCCTGTGGTAACATTCTGGGAGGG 360
consensus_15108#2      AACAATGGAAGCAGTTAATGTTCCCTTAGCTGATACCCCTGTGGTAACATTCTGGGAGGG 347
consensus_15108#0      AACAATGGAAGCACTTAATGTTCCCTTAGCTGATACCCCTGTGGTAACGTTCTGGGAGGG 660
                       ************* ********************************** ***********

consensus_15108#1      GGAGATAGTGGATGCTAAAAATTATACATTTTTCACTGGCAAGTGGGAGGCATCCCCAGA 420
consensus_15108#2      GGAGATAGTGGATGCTAAAAATTATACATTTTTCACTGGCAAGTGGGAGGCATCCCCAGA 407
consensus_15108#0      GGAGATAGTGGATGCTAAAAATTATACATTTTTCACTGGCAAGTGGGAAGCATCCCCAGA 720
                       ************************************************ ***********

consensus_15108#1      GGATGATATTAGACACTGGTCCAAGTTCCCATCATTTACACCTCTTCTGAGTCAGATAGA 480
consensus_15108#2      GGATGATATTAGACACTGGTCCAAGTTCCCATCATTTACACCTCTTCTGAGTCAGATAGA 467
consensus_15108#0      GGATGATATTAGACACTGGTCCAAGTTCCCATCATTTACGCCTCTTCTGAGTCAGATTGA 780
                       *************************************** ***************** **

consensus_15108#1      GACAGATGGTGGCAAGTCTGTGGACTTCAGCAACTATGCTTACATATTCATGAGATGGAA 540
consensus_15108#2      GACAGATGGTGGCAAGTCTGTGGACTTCAGCAACTATGCTTACATATTCATGAGATGGAA 527
consensus_15108#0      GACAGATGGTGGCAAGTCCGTGGACCTCAGCAACTATGCTTACATATTCATGAGATGGAA 840
                       ****************** ****** **********************************

consensus_15108#1      AGAGCAGTACTTTGTCAATGTTGGAGTGGACTGTGGGTTGACCATAGCTGGTTTCTACTA 600
consensus_15108#2      AGAGCAGTACTTTGTCAATGTTGGAGTGGACTGTGGGTTGACCATAGCTGGTTTCTACTA 587
consensus_15108#0      AGAGCAGTACTTTGTCAATGTTGGAGTGGACTGTGGGTTGACCATAGCTGGTTTCTACTA 900
                       ************************************************************

consensus_15108#1      TGTCTGCTTTTCATGTAGCGATGGTTCCATTAGCGGGTATTATTATGATCCAAACAGCAG 660
consensus_15108#2      TGTCTGCTTTTCATGTAGCGATGGTTCCATTAGCGGGTATTATTATGATCCAAACA---- 643
consensus_15108#0      TGTCTGCTTTTCATGTAGCGACGGTTCCATTAGCGGGTATTATTATGATCCAAACAGCAG 960
                       ********************* **********************************    

consensus_15108#1      TCCGTTTCAGAAGCTTGAACTGAAGTGTACCAATGAGAAAGATTCTGGATTTACCTTTTC 720
consensus_15108#2      ------------------------------------------------------------
consensus_15108#0      TCCGTTTCAGAAGCTTGAACTGAAGTGTACCAATGAGAAAGATTCTGGATTTACCTTTTC 1020
                                                                                   

consensus_15108#1      ATCCTACGAGCTGCAGTGAGAGACTGACAGGCCTGTTGTCATTATAGTATTTGCGGATGT 780
consensus_15108#2      ------------------------------------------------------------
consensus_15108#0      GTCCTACGAGCTGCAGTGAGAGACTGACAGGCCTGCTGTCATTATAGTATGTGCGGATGT 1080
                                                                                   

consensus_15108#1      TAATATACACAATGTGTGTACTGAACTCATAATTTTGAATGGCGTCCCATTAAAAGAGCT 840
consensus_15108#2      ------------------------------------------------------------
consensus_15108#0      TAATATACACAATGTATGTACTGAACTCATAATTCTGAATGGTGTCCCATTAAAAGGGCT 1140
                                                                                   

consensus_15108#1      GAGATGGCATGTTTGTAACAGTGATTTTGAGCAAGATGTATTTTATTCTCTTTGTAATAT 900
consensus_15108#2      ------------------------------------------------------------
consensus_15108#0      GAGATGGCATGTTTGTAACAGTGATTTGGAGCCAGATGTATTTTATTTTCTTTGTAATAT 1200
                                                                                   

consensus_15108#1      GATTATAAGCTGGTAAAATTTCTAATTTGAACCAAAAAAAATGTTCTTTTTGTGCTAATC 960
consensus_15108#2      ------------------------------------------------------------
consensus_15108#0      GAATATAAGCTGGTAAACTTTCTAGTTTGAACTACTTGTG-TGTTCTCTTTGTGCTAATC 1259
                                                                                   

consensus_15108#1      ACGGCATGGTTATGTCCAGAATAAATAAGACAAGAATGTGAGGGCTAGTTGCTCGTTCAA 1020
consensus_15108#2      ------------------------------------------------------------
consensus_15108#0      ATGGCATGGTTATGTCCAAAATAAATAAGACAAGAATGTGAGGGCTAGTTGCTCGTTCAA 1319
                                                                                   

consensus_15108#1      AGAAATATATATACTTC---------- 1037
consensus_15108#2      ---------------------------
consensus_15108#0      AGAAATATATACTTCTTTCCAAAAAAA 1346