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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15128#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1233 fasta sequence
[CGAATTCCCTTGGACCTGACTGGACTGAAGGAGTAGAAAAACACAACGACATCCTCTCCTCATCGCCTTCTAGAAACATCCCACGACGAGCCTCTCCTCTGATCCTCTCCTCCCCCACTCCACCGCCACCGCCGCCGTCGCCGCTGCCGCCGCCGCCGCGCGAGGAGGACGGGCGGATCTCCCAATGAGGTGTGAGGCTTGTTGATTGGGGAGCTGCTGGTTGTAGTTTGCAATTGCAAATGGTGGATTCCTCGGAAGGGCTCCGACGGCTCGCCGCGTTGCTGTTCAAGTGCTGCAGCCTTGACAGCTCCAATCGTCCCAACGGCCTGCAGGATCCTGAACGGTTGGCGAGGGAAACAGTTTTTAACGTAAATGAAATAGAGGCGCTGTATGAGCTGTTCAAGAAGATTAGCAGTGCTGTGGTTGATGATGGCTTGATCAATAAGGAAGAATTCCAACTGGCACTGTTTAAGACCAACAGAAAAGACAGCATGTTTGCTGATCGGGTATTTGATTTGTTTGACACGAAGCACAATGGGATTCTTGGATTCGAAGAATTTGCACGGGCTCTTTCTGTGTTTCATCCCAATGCTCCAATTGATGACAAAATTGATTTTGCTTTCAAACTTTATGATCTCAAACAACAAGGTTTCATTGAGAAGCAAGAGGTGAAGCAAAT-GGTGGTCG-CCAC-ACTTGCTGAAT-CAGGAATGAACCTTTCAGATGAGATTATAGAAGGC-ATTATTGACAAGACATTTGAGGAAGCAGATACAAAGCATGATGGGAAAATTGA-CAAGGAGGAGTGGCGCAACCTTGTGTTGAGGCATCCATCTTTATTAAAGAATATGACACTCCCATATCTCAGGGATATAACTACAACATTTCCAAGTTTTGTATTCAACTCCCAGGTTGAGGACGCATGAGGTCAAGCTTCAGACCATATTCTAGGGTCCAGTTCGTTTTATTTCATTTTGTTGATATCTTTCTCGTGCTTGGAACAAACTTTTATGATTGCTCCGCTTCAAGATGTGAATCCGTAGCAAGGATGAAGTTTTTACCATTTTTTA-TGTATATACTTGAAGATGGCCTTCAACTCTTCATGTGTAGACTTGTAGGATGAACCGTTTCTCGTGATGTAGAAATGTTCTTCAATCCTAAGATAAACGGTTGCCTCTAAAAAAAGCAACTCTCGTTACCGAGTATGCAAACCTAGGTCCTCTTCTACCCAAAAAAAAA]
[+] EMBL CF328494 [CGAATTCCCTTGGACCTGACTGGACTGAAGGAGTAGAAAAACACAACGACATCCTCTCCTCATCGCCTTCTAGAAACATCCCACGACGAGCCTCTCCTCTGATCCTCTCCTCCCCCACTCCACCGCCACCGCCGCCGTCGCCGCTGCCGCCGCCGCCGCGCGAGGAGGACGGGCGGATCTCCCAATGAGGTGTGAGGCTTGTTGATTGGGGAGCTGCTGGTTGTAGTTTGCAATTGCAAATGGTGGATTCCTCGGAAGGGCTCCGACGGCTCGCCGCGTTGCTGTTCAAGTGCTGCAGCCTTGACAGCTCCAATCGTCCCAACGGCCTGCAGGATCCTGAACGGTTGGCGAGGGAAACAGTTTTTAACGTAAATGAAATAGAGGCGCTGTATGAGCTGTTCAAGAAGATTAGCAGTGCTGTGGTTGATGATGGCTTGATCAATAAGGAAGAATTCCAACTGGCACTGTTTAAGACCAACAGAAAAGACAGCATGTTTGCTGATCGGGTATTTGATTTGTTTGACACGAAGCACAATGGGATTCTTGGATTCGAAGAATTTGCACGGGCTCTTTCTGTGTTTCATCCCAATGCTCC ]
[+] EMBL CF308813 [ CCTCTCCTCATCGCCTTCTAGAAACATCCCACGACGAGCCTCTCCTCTGATCCTCTCCTCCCCCACTCCACCGCCACCGCCGCCGTCGCCGCTGCCGCCGCCGCCGCGCGAGGAGGACGGGCGGATCTCCCAATGAGGTGTGAGGCTTGTTGATTGGGGAGCTGCTGGTTGTAGTTTGCAATTGCAAATGGTGGATTCCTCGGAAGGGCTCCGACGGCTCGCCGCGTTGCTGTTCAAGTGCTGCAGCCTTGACAGCTCCAATCGTCCCAACGGCCTGCAGGATCCTGAACGGTTGGCGAGGGAAACAGTTTTTAACGTAAATGAAATAGAGGCGCTGTATGAGCTGTTCAAGAAGATTAGCAGTGCTGTGGTTGATGA ]
[+] EMBL AK111505 [ CCCCACTCCACCGCCACCGCCGCCGTCGCCGCTGCCGCCGCCGCCGCGCGAGGAGGACGGGCGGATCTCCCAATGAGGTGTGAGGCTTGTTGATTGGGGAGCTGCTGGTTGTAGTTTGCAATTGCAAATGGTGGATTCCTCGGAAGGGCTCCGACGGCTCGCCGCGTTGCTGTTCAAGTGCTGCAGCCTTGACAGCTCCAATCGTCCCAACGGCCTGCAGGATCCTGAACGGTTGGCGAGGGAAACAGTTTTTAACGTAAATGAAATAGAGGCGCTGTATGAGCTGTTCAAGAAGATTAGCAGTGCTGTGGTTGATGATGGCTTGATCAATAAGGAAGAATTCCAACTGGCACTGTTTAACACCAACAGAAAAGACAGCATGTTTGCTGATCGGGTATTTGATTTGTTTGACACGAAGCACAATGGGATTCTTGGATTCGAAGAATTTGCACGGGCTCTTTCTGTGTTTCATCCCAATGCTCCAATTGATGACAAAATTGATTTTGCTTTCAAACTTTATGATCTCAAACAACAAGGTTTCATTGAGAAGCAAGAGGTGAAGCAAAT GGTGGTCG CCAC ACTTGCTGAAT CAGGAATGAACCTTTCAGATGAGATTATAGAAGGC ATTATTGACAAGACATTTGAGGAAGCAGATACAAAGCATGATGGGAAAATTGA CAAGGAGGAGTGGCGCAACCTTGTGTTGAGGCATCCATCTTTATTAAAGAATATGACACTCCCATATCTCAGGGATATAACTACAACATTTCCAAGTTTTGTATTCAACTCCCAGGTTGAGGACGCATGAGGTCAAGCTTCAGACCATATTCTAGGGTCCAGTTCGTTTTATTTCATTTTGTTGATATCTTTCTCGTGCTTGGAACAAACTTTTATGATTGCTCCGCTTCAAGATGTGAATCCGTAGCAAGGATGAAGTTTTTACCATTTTTTA TGCATATACTTGAAGATGGCCTTCAACTCTTCATGTGTAGACTTGTAGGATGAACCGTTTCTCGTGATGTAGAAATGTTCTTCAATCCTAAGATAAACGGTTGC ]
[+] EMBL CF196839 [ CCGCCGCCGCGCGAGGAGGACGGGCGGATCTCCCAATGAGGTGTGAGGCTTGTTGATTGGGGAGCTGCTGGTTGTAGTTTGCAATTGCAAATGGTGGATTCCTCGGAAGGGTTCCGACGGCTCGCCGCGTTGCTGTTCAAGTGCTGCAGCCTTGACAGCTCCAATCGTCCCAACGGCCTGCAGGATCCTGAACGGTTGGCGAGGGAAACAGTTTTTAACGTAAATGAAATAGAGGCGCTGTATGAGCTGTTCAAGAAGATTAGCAGTGCTGTGGTTGATGATGGCTTGATCAATAAGGAAGAATTCCAACTGGCACTGTTTAAGACCAACAGAAAAGACAGCATGTTTGCTGATCGGGTATTTGATTTGTTTGACACAAAGCACAATGGGATTCTTGGATTCGAAGAATTTGCACGGGCTCTTTCTGTGTTTCATCCCAATGCTCCAATTGATGACAAAATTGATTTTGCTTTCAAACTTTATGATCTCAAACAACAAGGTTTCATTGAGAAGCAAGAGGTGAAGCAAAT GGTGGTCG CCAC ACTTGCTGAAT CNNNAATGAACCTTNCANNTGAGNNNATAGAAGGC ATTATTGACnn ]
[-] EMBL CF308814 [ TGATTTGTTTGACACGAAGCACAATGGGATTCTTGGATTCGAAGAATTTGCACGGGCTCTTTCTGTGTTTCATCCCAATGCTCCAATTGATGACAAAATTGATTTTGCTTTCAAACTTTATGATCTCAAACAACAAGGTTTCATTGAGAAGCAAGAGGTGAAGCAAAT GGTGGTCG CCAC ACTTGCTGAAT CAGGAATGAACCTTTCAGATGAGATTATAGAAGGC ATTATTGACAAGACATTTGAGGAAGCAGATACAAAGCATGATGGGAAAATTGA CAAGGAGGAGTGGCGCAACCTTGTGTTGAGGCATCCATCTTTATTAAAGAATATGACACTCCCATATCTCAGGGATATAACTACAACATTTCCAAGTTTTGTATTCAACTCCCAGGTTGAGGACGCATGAGGTCAAGCTTCAGACCATATTCTAGGGTCCAGTTCGTTTTATTTCATTTTGTTGATATCTTTCTCGTGCTTGGAACAAACTTTTATGATTGCTCCGCTTCAAGATGTGAATCCGTAGCAAGGATGAAGTTTTTACCATTTTTTA TGTATATACTTGAATATGGCCTTCAAaaaa ]
[+] EMBL AU082672 [ GGATTCTTGGATTCGAAGAATTTGCACGGGNTCTTTCTGTGTTTCATCCC ATGCTCCAATTGATGACAAAATTGATTTTGCTTTCAAACTTTATGATCTCAAACAACAAGGTTTCATTGAGAAGCAAGAGGTGAAGCAAAT GGTGGTCG CCAC ACTTGCTGAAT CAGGAATGAACCTTTCAGATGAGATTATAGAAGGC ATTATTGACAAGACATTTGAGGAAGCAGATACAAAGCATGATGGGAAAATTGA CAAGGAGGAGTGGCGCAACCTTGTGTTGAGGCATCCATCTTTATTAAAGAATATGACACTCCCATATCTCAGGGATATAACTACAACATTTCCAAGTTTTGTATTCAACTCCCAGGTTGAGGACGCATGAGGTCAAGCTTCAGACCATATTCTAGGGTCCAGTTCGTTTTATTTCATTTTGTTGATATCTTTCTCGTGCTTGGAACAAACTTTTATGATTGCTCCGCTTCAAGATGTGAATCCGTAGCAAGGATGAAGTTTTTACCATTTTTTA TGTATATACTTGAAGATGGCCTTCAACTCTTCATGTGTAGACTTGTAGGATGAACCGTTTCTCGTGATGTAGAAATGTTCTTCAATCCTAAGATAAACGGTTGCCTCTACCGTCAGCAACTCTCGTTACCGAGTATGCAAACCTAGGTCCTCTTCTACCCAAAAAAAAA]
[+] EMBL CA998498 [ TCTTGGATTCGAAGAATTTGCACGGGCTCTTTCTGTGTTTCATCCCAATGCTCCAATTGATGACAAAATTGATTTTGCTTTCAAACTTTATGATCTCAAACAACAAGGTTTCATTGAGAAGCAAGAGGTGAAGCAAAT GGTGGTCG CCAC ACTTGCTGAAT CAGGAATGAACCTTTCAGATGAGATTATAGAAGGC ATTATTGACAAGACATTTGAGGAAGCAGATACAAAGCATGATGGGAAAATTGA CAAGGAGGAGTGGCGCAACCTTGTGTTGAGGCATCCATCTTTATTAAAGAATATGACACTCCCATATCTCAGGGATATAACTACAACATTTCCAAGTTTTGTATTCAACTCCCAGGTTGAGGACGCATGAGGTCAAGCTTCAGACCATATTCTAGGGTCCAGTTCGTTTTATTTCATTTTGTTGATATCTTTCTCGTGCTTGGAACAAACTTTTATGATTGCTCCGCTTCAAGATGTGAATCCGTAGCAAGGATGAAGTTTTTACCATTTTTTA TGTATATACTTGAAGATGGCCTTCAAC ]
[-] EMBL CF328495 [ TTGGATTCGAAGAATTTGCACGGGCTCTTTCTGTGTTTCATCCCAATGCTCCAATTGACGACAAAATTGATTTTGCTTTCAAACTTTATGATCTCAAACAACAAGGTTTCATTGAGAAGCAAGAGGTGAAGCAAAT GGTGGTCG CCAC ACTTGCTGAAT CAGGAATGAACCTTTCAGATGAGATTATAGAAGGC ATTATTGACAAGACATTTGAGGAAGCAGATACAAAGCATGATGGGAAAATTGA CAAGGAGGAGTGGCGCAACCTTGTGTTGAGGCATCCATCTTTATTAAAGAATATGACACTCCCATATCTCAGGGATATAACTACAACATTTCCAAGTTTTGTATTCAACTCCCAGGTTGAGGACGCATGAGGTCAAGCTTCAGACCATATTCTAGGGTCCAGTTCGTTTTATTTCATTTTGTTGATATCTTTCTCGTGCTTGGAACAAACTTTTATGATTGCTCCGCTTCAAGATGTGAATCCGTAGCAAGGATGAAGTTTTTACCATTTTTTAGTGTATATACTTGAAGATGGCCTTCAAaaaaaaaaa ]
[-] EMBL CF309473 [ CAATGCTCCAATTGATGACAAAATTGATTTTGCTTTCAAACTTTATGATCTCAAACAACAAGGTTTCATTGAGAAGCAAGAGGTGAAGCAAAT GGTGGTCG CCAC ACTTGCTGAAT CAGGAATGAACCTATCAGATGAGATTATAGAAGGC ATTATTGACAAGACACTTGAGGAAGCAGATACAAAGCATGATGGGAAAATTGA CAAGGAGGAGTGGCGCAACCTTGTGTTGAGGCATCCATCTTTATTAAAGAATATGACACTCCCATATCTCAGGGATATAACTACAACATTTCCAAGTTTTGTATTCAACTCCCAGGTTGAGGACGCATGAGGTCAAGCTTCAGACCATATTCTAGGGTCCAGTTCGTTTTATTTCATTTTGTTGATATCTTTCTCGTGCTTGGAACAAACTTTTATGATTGCTCCGCTTCAAGATGTGAATCCGTAGCAAGGATGAAGTTTTTACCATTTTTTA TGTATATACTTGAAGATGGCCTTCAACTCTTCATGTGTAGACTTGTAGGATGAACCGTTTCTCGTGATGTAGAAATGTTCTTCAATCCTAAGATAAACGGTTGCCTCTAAAAAA ]
[+] EMBL BI806966 [ TCATTGAGAAGCAAGAGGTGAA CAAATGGGTGGTCG CCAC ACTTGCTGAATCCAGGAATGAACCTTTCAGATGAGATTATAGAAGGC ATTATTGACAAGACATTTGAGGAA CAGATACAAAGCATGATGGGAAAATTGACCAAGGAGGAGTGGCGCAACCTTGTGTTGAGGCATCCATCTTTATTAAAGAATATGACACTCCCATATCTCAGGGATATAACTACAACATTTCCAAGTTTTGTATTCAACTCCCAGGTTGAGGACGCATGAGGTCAAGCTTCAGACCATATTCTAGGGTCCAGTTCGTTTTATTTCATTTTGTTGATATCTTTCTCGTGCTTGGAACCNACTTTTATGATTGCTCCGCTTCAAGATGTGAATCCGTAGCAAGGATGAAGTTTTTACCATTTTTTA TGTATATACTTGAAGATGGCCTTCAACTCTTCATGTGTAGACTTGTAGGATGAACCGTTTCTCGTGATGTAGAAATGTTCTTCAATCCTCAGATAAACGGTTGCCTCTAAAAAAA ]
[+] EMBL AU056635 [ GTCGCCCACAACTTGCTGAAT CAGNAATGAACCTTTCAGATGAGATTATAGAAGGCAATTATTGACAAGACATTTGAGGAAGCAGATACAAAGCATGATGGGAAAATTGA CAAGGAGGAGTGGCGCAACCTTGTGTTGAGGCATCCATCTTTANTAAAGAATATGACACTCCCATATCTCAGGGATATAACTACAACATTTCCAAGTTTTGTATTCAACTCCCNGGTTGAGGACGCATGAGGTCAAGCTTCAGACCATATTCTAGGGTCCAGTTCGTTTTATTTCATTTTGTTGATATCTTTCTCGTGCTTGGAACAAACTTTTATGATT NTCCGCTTCAAGATGTGAATCCGTAGCAAGGATGAAGTTTTTACCATTTTTTA TGTATATACTTGAAGATGGCCTTCAACTCTTCATGTGTAGACTTGTAGGATGAACCGTTTCTCGTGATGTAGAAATGTTCTTCAATCCTAAGATAAACGGTTGCCTCTAAAAAAAa ]
consensusID : consensus_15128#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1024 fasta sequence
[CATGGATTGAAGGAGTAGAAATGAGGCTTGTTGATTGGGGAGCTGCTGGTTGTAGTTTGCAATTGCAAATGGTGGATTCCTCGGAAGGGCTCCGACGGCTCGCCGCGTTGCTGTTCAAGTGCTGCAGCCTTGACAGCTCCAATCGTCCCAACGGCCTGCAGGATCCTGAACGGTTGGCGAGGGAAACAGTTTTTAACGTAAATGAAATAGAGGCGCTGTATGAGCTGTTCAAGAAGATTAGCAGTGCTGTGGTTGATGATGGCTTGATCAATAAGGAAGAATTCCAACTGGCACTGTTTAAGACCAACAGAAAAGACGGCATGTTTGCTGATCGGGTATTTGATTTGTTTGACACGAAGCACAATGGGATTCTTGGATTCGAAGAATTTGCACGGGCTCTTTCTGTGTTTCATCCCAATGCTCCAATTGATGACAAAATTGATTTTGCTTTCAAACTTTATGATCTCAAACAACAAGGTTTCATTGAGAAGCAAGAGGTGAA-CAAATGGTGGTCGCCACACTTGCTGAATCAGGAATGAACCTTTCAGATGAGATTATAGAAGGCATTATTGACAAGACATTTGAGGAAGCAGATACAAAGCATGATGGGAAAATTGACAA-GGAGGAGTGGCGCAA-CCTTGTGTTGAGGCATCCATCTTTATTAAAGAATATGACACTCCCATATCTCAGGGATATAACTACAACATTTCCAAGTTTTGTATTCAACTCCCAGGTTGAGGACGCATGAGGTCAAGCTTCAGACCATATTCTAGGGTCCAGTTCGTTTTATTTCATTTTGTTGATATCTTTCTCGTGCTTGGAACAAACTTTTATGATTGCTCCGCTTCAAGATGTGAATCCGTAGCAAGGATGAAGTTTTTACCATTTTTTATGTATATACTTGAAGATGGCCTTCAACTCTTCATGTGTAGACTTGTAGGATGAACCGTTTCTCGTGATGTAGAAATGTTCTTCAATCCTAAGATAAACGGTTGCCTCTACCGTCAGCAAAAAAAAAAAAAAA]
[+] EMBL CF309472 [CATGGATTGAAGGAGTAGAAATGAGGCTTGTTGATTGGGGAGCTGCTGGTTGTAGTTTGCAATTGCAAATGGTGGATTCCTCGGAAGGGCTCCGACGGCTCGCCGCGTTGCTGTTCAAGTGCTGCAGCCTTGACAGCTCCAATCGTCCCAACGGCCTGCAGGATCCTGAACGGTTGGCGAGGGAAACAGTTTTTAACGTAAATGAAATAGAGGCGCTGTATGAGCTGTTCAAGAAGATTAGCAGTGCTGTGGTTGATGATGGCTTGATCAATAAGGAAGAATTCCAACTGGCACTGTTTAAGACCAACAGAAAAGACGGCATGTTTGCTGATCGGGTATTTGATTTGTTTGACACGAAGCACAATGGGATTCTTGGATTCGAAGAATTTGCACGGGCTCTTTCTGTGTTTCATCCCAATGCTCCAATTGATGACAAAATTGATTTTGCTTTCAAACTTTATGATCTCAAACAACAAGGTTTCATTGAGAAGCAAGAGGTGAA CAAATGGTGGTCGCCACACTTGCTGAATCAGGAATGAACCTATCAGATGAGATTATAGAAGGCATTATTGACAAGACACTTGAGGAAGCAGATACAAAGCATGATGGGAAAATTG CAAGGGAGGAGTGGCGCAACCCTTGTGTTGAGGCATCCATCTTTATTAAAGAATATGACACT ]
[+] EMBL AU083358 [ CACGGGCTCTTTCTGTGTTTCATCCCAATGCCCCAATTGATGAC AAATTGATTTTGCTTTCAAACTTTATGATCTCAAACAACAAGGTTTCATTGAGAANCAAGAGGTGAAGCAAATGGTGGTCGCCACACTTGCTGAATCAGGAATGACCCTTTCAGATGAGATTATAGAAGGCATTNTTGACAAGACATTTGAGGAAGCAGATNCAAAGCATGATGGGAAAATTGACAA GGAGGAGTGGCGCAA CCTTGTGTTGAGGCATCCATCTTTATTAAAGAATATGACACTCCCATATCTCAGGGATATAACTACAACATTTCCAAGTTTTGTATTCAACTCCCAGGTTGAGGACGCATGAGGTCAAGCTTCAGACCATATTCTAGGGTCCAGTTCGTTTTATTTCATTTTGTTGATATCTTTCTCGTGCTTGGAACAAACTTTTATGATTGCTCCGCTTCAAGATGTGAATCCGTAGCAAGGATGAAGTTTTTACCATTTTTTATGTATATACTTGAAGATGGCCTTCAACTCTTCATGTGTAGACTTGTAGGATGAACCGTTTCTCGTGATGTAGAAATGTTCTTCAATCCTAAGATAAACGGTTGCCTCTACCGTCAGCAAAAAAAAAAAAAAA]
[-] EMBL CF279880 [ TGAACCTTTCAGATGAGATTATAGAAGGCATTATTGACAAGACATTTGAGGAAGCAGATACAAAGCATGATGGGAAAATTGACAA GGAGGAGTGGCGCAA CCTTGTGTTGAGGCATCCATCTTTATTAAAGAATATGACACTCCCATATCTCAGGGATATAACTACAACATTTCCAAGTTTTGTATTCAACTCCCAGGTTGAGGACGCATGAGGTCAAGCTTCAGACCATATTTTAGGGTCCAGCTCGTTTTATTTCATTTTGTTGATATCTTTCTCGTGCTTGGAACAAACTTTTATGATTGCTCCGCTTCAAGATGTGAATCCGTAGCAAGGATGAAGTTTTTACCATTTTTTATGTATATACTTGAAGATGGCCTTCAACTCTTCATGTGTAGACTTGTAGGATGAACCGTTTCTCGTGATGTAGAAATGTTCTTCAATCCTAAGATAAACGGTTGCCTCTCCCGTCA AAAAAAAAAAAA ]
[+] EMBL CA766361 [ CAA CCTTGTGTTGAGGCATCCATCTTTATTAAAGAATATGACACTCCCATATCTCAGGAATATAACTACAACATTTCCAAGTTTTGTATTCAACTCCCAGGTTGAGGACGCATGAGGTCAAGCTTCAGACCATATTCTAGGGTCCAGTTCGTTTTATTTCATTTTGTTGATATCTTTCTCGTGCTTGGAACAAACTTTTATGATTGCTCCGCTTCAAGATGTGAATTCGTAGCAAGGATGAAGTTTTTACCATTTTTTATGTATATACTTGAAGATGGCCTTCAACTCTTCATGTGTAGACTTGTAGGATGAACCGTTTCTCGTGATGTAGAAATGTTCTTCAATCCTAAGATAAACGGTTGCCTC ]
consensusID : consensus_15128#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 636 fasta sequence
[CATGGACTGAGGAGTAGAAAATCCCCGACGAGCCTCTCCTCTGATCCTCTCCTCCCCCACTCCACCGCCACCGCCGCCGTCGCCGCTGCCGCCGCCGCCGCGCGAGGAGGACGGGCGGATCTCCCAATGAGGTGTGAGGCTTGTTGATTGGGGAGCTGCTGGTTGTAGTTTGCAATTGCAAATGGTGGATTCCTCGGAAGGGCTCCGACGGCTCGCCGCGTTGCTGTTCAAGTGCTGCAGCCTTGACAGCTCCAATCGTCCCAACGGCCTGCAGGATCCTGAACGGTTGGCGAGGGAAACAGTTTTTAACGTAAATGAAATAGAGGCGCTGTATGAGCTGTTCAAGAAGATTAGCAGTGCTGTGG-TTGATGATGGCTTGATCAATAAGGAAGAATTCCAACTGGCACTGTTTAAGACCAACA-GAAAAGACAGCATGTTT-GCTGA-TCGGGTATTTGATTTGTTTGACACGAAGCACAAT-GGGATTCTTG-GATTCGAAGAATTT-GCACGGGC-TC-TTTCTGTGTTTCATCCCAATGCTCCAATTGATGACAAAATTGATTTTGCTTTCAAAC-TTTATGATCTCAAACAACAAGGTTTCATTGAGAAGCAAGAGGTGAAGCAAATGGGTGGTCGCCACAC]
[+] EMBL CF336464 [CATGGACTGAGGAGTAGAAAATCCCCGACGAGCCTCTCCTCTGATCCTCTCCTCCCCCACTCCACCGCCACCGCCGCCGTCGCCGCTGCCGCCGCCGCCGCGCGAGGAGGACGGGCGGATCTCCCAATGAGGTGTGAGGCTTGTTGATTGGGGAGCTGCTGGTTGTAGTTTGCAATTGCAAATGGTGGATTCCTCGGAAGGGCTCCGACGGCTCGCCGCGTTGCTGTTCAAGTGCTGCAGCCTTGACAGCTCCAATCGTCCCAACGGCCTGCAGGATCCTGAACGGTTGGCGAGGGAAACAGTTTTTAACGTAAATGAAATAGAGGCGCTGTATGAGCTGTTCAAGAAGATTAGCAGTGCTGTGG TTGATGATGGCTTGATCAATAAGGAAGAATTCCAACTGGCACTGTTTAAGACCAACA GAAAAGACAGCATGTTT GCTGA TCGGGTATTTGATTTGTTTGACACGAAGCACAAT GGGATTCTTG GATTCGAAGAATTT GCACGGGC TC TTTCTGTGTTTCATCCCAATGCTCCAATTGATGACAAAATTGATTTTGCTTTCAAAC TTTATGATCTCAAACAACAAGGTTTCATTGAGAAGCAAGAGGTGAAGCAAATGGGTGGTCGCCACAC]
[+] EMBL AU165961 [ CCGCCGTCGCCGCTGCCGCCGCCGCCGCGCGAGGAGGACGGGCGGATCTCCCAATGAGGTGTGAGGCTTGTTGATTGGGGAGCTGCTGGTTGTAGTTTGCAATTGCAAATGGTGGATTCCTCGGAAGGGCTCCGACGGCTCGCCGCGTTGCTGTTCAAGTGCTGCAGCCTTGACAGCTCCAATCGTCCCAACGGCCTGCAGGATCCTGAACGGTTGGCGAGGGAAACAGTTTTTAACGTAAATGAAATAGAGGCGCTGTATGAGCTGTTCAAGAAGATTAGCAGTGCTGTGGNTGGATGATGGCTTGATCAATAAGGAAGAATTCCAACTGGCACTGTTTAAGACCAACAGGAAAAGACAGCATGTTTGGCTGATTCGGGTATTTGATTTGTTTGACACGAAGCACAATGGGGATTCTTGNGATTCGAAGAATTTGGCACGGGCTTCTTTTCTGTGTTTCATCCCAATGCTCCAATTGATGACAAAATTGATTTTGNTTTCAAACTTTTATGATCT ]
[+] EMBL CF279881 [ TGCCGCCGCCGCCGCGCGAGGAGGACGGGCGGATCTCCCAATGAGGTGTGAGGCTTGTTGATTGGGGAGCTGCTGGTTGTAGTTTGCAATTGCAAATGGTGGATTCCTCGGAAGGGCTCCGACGGCTCGCCGCGTTGCTGTTCAAGTGCTGCAGCCTTGACAGCTCCAATCGACCCAACGGCCTGCAGGATCCTGAACGGTTGGCGAGGGAAACAGTTTTTAACGTAAATGAAATAGAGGCGCTGTATGAGCTGTTCAAGAAGATTAGCAGTGCTGTGG TTGATGATGGCTTGATCAATAAGGAAGAATTCCAACTGGCACTGTTTA ]
consensusID : consensus_15128#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 375 fasta sequence
[CGAGCCGCCGCCGGGGAGGAAGGMCGGGGCGGATCTCCCAATGAGGTGTGAGGCTBKTTRTTTGGGAGCTCTCTKTGKTGTAGKTTKCAATTGCAAATGTGTKGGTTTCYCGCGGAGGGGSTCTCCGCGCGCTCTCGCCCGCGTTGCTGTTCAAGTGCTGCAGCCTTGACAGCTCCAATCGTCCCAACGCYCTGCAGGATCCTGAACGSTTGGCGAGRGAAACAGTTTTTAACGTAAATGAAATAGAGGCGCTGTATGAGCTGTTCAAGAAGATTAGCAGTGCTGTGGTTGATGATGGCTTGAWCAATAAGGAAGAATTCCAACTGGCACTGTTTAAGACCAACAGAAAAGACAGCATGTTTGCTGATCGGGTAT]
[+] EMBL BE229497 [CGAGCCGCCGCCGGGGAGGAAGGMCGGGGCGGATCTCCCAATGAGGTGTGAGGCTBKTTRTTTGGGAGCTCTCTKTGKTGTAGKTTKCAATTGCAAATGTGTKGGTTTCYCGCGGAGGGGSTCTCCGCGCGCTCTCGCCCGCGTTGCTGTTCAAGTGCTGCAGCCTTGACAGCTCCAATCGTCCCAACGCYCTGCAGGATCCTGAACGSTTGGCGAGRGAAACAGTTTTTAACGTAAATGAAATAGAGGCGCTGTATGAGCTGTTCAAGAAGATTAGCAGTGCTGTGGTTGATGATGGCTTGAWCAATAAGGAAGAATTCCAACTGGCACTGTTTAAGACCAACAGAAAAGACAGCATGTTTGCTGATCGGGTAT]
consensusID : consensus_15128#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 296 fasta sequence
[GCATCCATCTTTATTAAAGAATATGACACTCCCATATTTCAGGGATATAACTACAACATTTCCAAGTTTTGTATTCAACTCCCAGGTTGAGGACGCATGAGGTCAAGTTTCAGACCATATTTTAGGGTCCAGTTCGTTTTATTTCATTTTGTTGATATCTTTTTGGGGCTTGGAACAAACTTTTATGATTGCTCCGCTTCAAAATGTGAATCCGTAGCAAGGATGAAGTTTTTACCATTTTTTATGTATATACTTGAAAATGGCCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF336463 [GCATCCATCTTTATTAAAGAATATGACACTCCCATATTTCAGGGATATAACTACAACATTTCCAAGTTTTGTATTCAACTCCCAGGTTGAGGACGCATGAGGTCAAGTTTCAGACCATATTTTAGGGTCCAGTTCGTTTTATTTCATTTTGTTGATATCTTTTTGGGGCTTGGAACAAACTTTTATGATTGCTCCGCTTCAAAATGTGAATCCGTAGCAAGGATGAAGTTTTTACCATTTTTTATGTATATACTTGAAAATGGCCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15128#2 ----------------------------------------------------------CA 2
consensus_15128#3 ------------------------------------------------------------
consensus_15128#0 CGAATTCCCTTGGACCTGACTGGACTGAAGGAGTAGAAAAACACAACGACATCCTCTCCT 60
consensus_15128#1 ------------------------------------------------------------
consensus_15128#4 ------------------------------------------------------------
consensus_15128#2 TGGACTGAGGAGTAGAAAATCCCCGACGAGCCTCTCCTCTGATCCTCTCCTCCCCCACTC 62
consensus_15128#3 ------------------------------------------------------------
consensus_15128#0 CATCGCCTTCTAGAAACATCCCACGACGAGCCTCTCCTCTGATCCTCTCCTCCCCCACTC 120
consensus_15128#1 ------------------------------------------------------------
consensus_15128#4 ------------------------------------------------------------
consensus_15128#2 CACCGCCACCGCCGCCGTCGCCGCTGCCGCCGCCGCCGCGCGAGGAGGACGGG-CGGATC 121
consensus_15128#3 -------------------------CGAGCCGCCGCCGGGGAGGAAGGMCGGGGCGGATC 35
consensus_15128#0 CACCGCCACCGCCGCCGTCGCCGCTGCCGCCGCCGCCGCGCGAGGAGGACGGG-CGGATC 179
consensus_15128#1 ----------------------------------------------------CATGGATT 8
consensus_15128#4 ----------------------------GCATCCATCTTTATTAAAGAATATGACACTCC 32
consensus_15128#2 TCCCAATGAGGTGTGAGGCT-TGTTGATTGGGGAGCTGCTG-----GTTGTAGTTTGCAA 175
consensus_15128#3 TCCCAATGAGGTGTGAGGCT-BKTTRTTTGGGAGCTCTCTKT----GKTGTAGKTTKCAA 90
consensus_15128#0 TCCCAATGAGGTGTGAGGCT-TGTTGATTGGGGAGCTGCTG-----GTTGTAGTTTGCAA 233
consensus_15128#1 GAAGGAGTAGAAATGAGGCT-TGTTGATTGGGGAGCTGCTG-----GTTGTAGTTTGCAA 62
consensus_15128#4 CATATTTCAGGGATATAACTACAACATTTCCAAGTTTTGTATTCAACTCCCAGGTTGAGG 92
** * ** ** * ** **
consensus_15128#2 TTGCAAATG-GTGGATTCC---TCG----GAAGGGCTCCGACGGCTC---GCCGCGTTGC 224
consensus_15128#3 TTGCAAATGTGTKGGTTTC---YCGCGGAGGGGSTCTCCGCGCGCTCTCGCCCGCGTTGC 147
consensus_15128#0 TTGCAAATG-GTGGATTCC---TCG----GAAGGGCTCCGACGGCTC---GCCGCGTTGC 282
consensus_15128#1 TTGCAAATG-GTGGATTCC---TCG----GAAGGGCTCCGACGGCTC---GCCGCGTTGC 111
consensus_15128#4 ACGCATGAGGTCAAGTTTCAGACCATATTTTAGGGTCCAGTTCGTTTTATTTCATTTTGT 152
*** * ** * * * * * * * * ***
consensus_15128#2 TGTTCAAGTGCTGCAGCCTTGAC--AGCTCCAATCGTCCCAACGGCCTGCAGGATCCTGA 282
consensus_15128#3 TGTTCAAGTGCTGCAGCCTTGAC--AGCTCCAATCGTCCCAACGCYCTGCAGGATCCTGA 205
consensus_15128#0 TGTTCAAGTGCTGCAGCCTTGAC--AGCTCCAATCGTCCCAACGGCCTGCAGGATCCTGA 340
consensus_15128#1 TGTTCAAGTGCTGCAGCCTTGAC--AGCTCCAATCGTCCCAACGGCCTGCAGGATCCTGA 169
consensus_15128#4 TGATATCTTTTTGGGGCTTGGAACAAACTTTTATGATTGCTCCG--CTTCAAAATG-TGA 209
** * * ** ** * ** * ** ** * * ** ** ** ** ***
consensus_15128#2 ACGGTTGGCGAGGGAAACAGTTTTTAACGTAAATGAAATAGAGGCGCTGTATGAGCTGTT 342
consensus_15128#3 ACGSTTGGCGAGRGAAACAGTTTTTAACGTAAATGAAATAGAGGCGCTGTATGAGCTGTT 265
consensus_15128#0 ACGGTTGGCGAGGGAAACAGTTTTTAACGTAAATGAAATAGAGGCGCTGTATGAGCTGTT 400
consensus_15128#1 ACGGTTGGCGAGGGAAACAGTTTTTAACGTAAATGAAATAGAGGCGCTGTATGAGCTGTT 229
consensus_15128#4 ATCCGTAGCAAGGATGA-AGTTTTTACCATTTTTTATGTATATAC-TTGAAAATGGCCTT 267
* * ** ** * ******** * * * * ** * * ** * * **
consensus_15128#2 CAAGAAGATTAGCAGTGCTGTGGTTGATGATGGCTTGATCAATAAGGAAGAATTCCAACT 402
consensus_15128#3 CAAGAAGATTAGCAGTGCTGTGGTTGATGATGGCTTGAWCAATAAGGAAGAATTCCAACT 325
consensus_15128#0 CAAGAAGATTAGCAGTGCTGTGGTTGATGATGGCTTGATCAATAAGGAAGAATTCCAACT 460
consensus_15128#1 CAAGAAGATTAGCAGTGCTGTGGTTGATGATGGCTTGATCAATAAGGAAGAATTCCAACT 289
consensus_15128#4 CAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------------- 296
*** ** * * * *
consensus_15128#2 GGCACTGTTTAAGACCAACAGAAAAGACAGCATGTTTGCTGATCGGGTATTTGATTTGTT 462
consensus_15128#3 GGCACTGTTTAAGACCAACAGAAAAGACAGCATGTTTGCTGATCGGGTAT---------- 375
consensus_15128#0 GGCACTGTTTAAGACCAACAGAAAAGACAGCATGTTTGCTGATCGGGTATTTGATTTGTT 520
consensus_15128#1 GGCACTGTTTAAGACCAACAGAAAAGACGGCATGTTTGCTGATCGGGTATTTGATTTGTT 349
consensus_15128#4 ------------------------------------------------------------
consensus_15128#2 TGACACGAAGCACAATGGGATTCTTGGATTCGAAGAATTTGCACGGGCTCTTTCTGTGTT 522
consensus_15128#3 ------------------------------------------------------------
consensus_15128#0 TGACACGAAGCACAATGGGATTCTTGGATTCGAAGAATTTGCACGGGCTCTTTCTGTGTT 580
consensus_15128#1 TGACACGAAGCACAATGGGATTCTTGGATTCGAAGAATTTGCACGGGCTCTTTCTGTGTT 409
consensus_15128#4 ------------------------------------------------------------
consensus_15128#2 TCATCCCAATGCTCCAATTGATGACAAAATTGATTTTGCTTTCAAACTTTATGATCTCAA 582
consensus_15128#3 ------------------------------------------------------------
consensus_15128#0 TCATCCCAATGCTCCAATTGATGACAAAATTGATTTTGCTTTCAAACTTTATGATCTCAA 640
consensus_15128#1 TCATCCCAATGCTCCAATTGATGACAAAATTGATTTTGCTTTCAAACTTTATGATCTCAA 469
consensus_15128#4 ------------------------------------------------------------
consensus_15128#2 ACAACAAGGTTTCATTGAGAAGCAAGAGGTGAAGCAAATGGGTGGTCGCCACAC------ 636
consensus_15128#3 ------------------------------------------------------------
consensus_15128#0 ACAACAAGGTTTCATTGAGAAGCAAGAGGTGAAGCAAATGG-TGGTCGCCACACTTGCTG 699
consensus_15128#1 ACAACAAGGTTTCATTGAGAAGCAAGAGGTGAA-CAAATGG-TGGTCGCCACACTTGCTG 527
consensus_15128#4 ------------------------------------------------------------
consensus_15128#2 ------------------------------------------------------------
consensus_15128#3 ------------------------------------------------------------
consensus_15128#0 AATCAGGAATGAACCTTTCAGATGAGATTATAGAAGGCATTATTGACAAGACATTTGAGG 759
consensus_15128#1 AATCAGGAATGAACCTTTCAGATGAGATTATAGAAGGCATTATTGACAAGACATTTGAGG 587
consensus_15128#4 ------------------------------------------------------------
consensus_15128#2 ------------------------------------------------------------
consensus_15128#3 ------------------------------------------------------------
consensus_15128#0 AAGCAGATACAAAGCATGATGGGAAAATTGACAAGGAGGAGTGGCGCAACCTTGTGTTGA 819
consensus_15128#1 AAGCAGATACAAAGCATGATGGGAAAATTGACAAGGAGGAGTGGCGCAACCTTGTGTTGA 647
consensus_15128#4 ------------------------------------------------------------
consensus_15128#2 ------------------------------------------------------------
consensus_15128#3 ------------------------------------------------------------
consensus_15128#0 GGCATCCATCTTTATTAAAGAATATGACACTCCCATATCTCAGGGATATAACTACAACAT 879
consensus_15128#1 GGCATCCATCTTTATTAAAGAATATGACACTCCCATATCTCAGGGATATAACTACAACAT 707
consensus_15128#4 ------------------------------------------------------------
consensus_15128#2 ------------------------------------------------------------
consensus_15128#3 ------------------------------------------------------------
consensus_15128#0 TTCCAAGTTTTGTATTCAACTCCCAGGTTGAGGACGCATGAGGTCAAGCTTCAGACCATA 939
consensus_15128#1 TTCCAAGTTTTGTATTCAACTCCCAGGTTGAGGACGCATGAGGTCAAGCTTCAGACCATA 767
consensus_15128#4 ------------------------------------------------------------
consensus_15128#2 ------------------------------------------------------------
consensus_15128#3 ------------------------------------------------------------
consensus_15128#0 TTCTAGGGTCCAGTTCGTTTTATTTCATTTTGTTGATATCTTTCTCGTGCTTGGAACAAA 999
consensus_15128#1 TTCTAGGGTCCAGTTCGTTTTATTTCATTTTGTTGATATCTTTCTCGTGCTTGGAACAAA 827
consensus_15128#4 ------------------------------------------------------------
consensus_15128#2 ------------------------------------------------------------
consensus_15128#3 ------------------------------------------------------------
consensus_15128#0 CTTTTATGATTGCTCCGCTTCAAGATGTGAATCCGTAGCAAGGATGAAGTTTTTACCATT 1059
consensus_15128#1 CTTTTATGATTGCTCCGCTTCAAGATGTGAATCCGTAGCAAGGATGAAGTTTTTACCATT 887
consensus_15128#4 ------------------------------------------------------------
consensus_15128#2 ------------------------------------------------------------
consensus_15128#3 ------------------------------------------------------------
consensus_15128#0 TTTTATGTATATACTTGAAGATGGCCTTCAACTCTTCATGTGTAGACTTGTAGGATGAAC 1119
consensus_15128#1 TTTTATGTATATACTTGAAGATGGCCTTCAACTCTTCATGTGTAGACTTGTAGGATGAAC 947
consensus_15128#4 ------------------------------------------------------------
consensus_15128#2 ------------------------------------------------------------
consensus_15128#3 ------------------------------------------------------------
consensus_15128#0 CGTTTCTCGTGATGTAGAAATGTTCTTCAATCCTAAGATAAACGGTTGCCTCTAAAAAAA 1179
consensus_15128#1 CGTTTCTCGTGATGTAGAAATGTTCTTCAATCCTAAGATAAACGGTTGCCTCTACCGTCA 1007
consensus_15128#4 ------------------------------------------------------------
consensus_15128#2 ------------------------------------------------------
consensus_15128#3 ------------------------------------------------------
consensus_15128#0 GCAACTCTCGTTACCGAGTATGCAAACCTAGGTCCTCTTCTACCCAAAAAAAAA 1233
consensus_15128#1 GCAAAAAAAAAAAAAAA------------------------------------- 1024
consensus_15128#4 ------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||