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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15239#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1085 fasta sequence
[GCTTGTGTGACCGGCTCCTACGGCCCTACCATTGAGGGTTCGCCTCCGATCTTCTGCCGGAACCCATAGCCATGAGGACTTCCCTTGTTCGTTTCTTCCTTACTATCCTCGCCAACACGTTTCTCCATTCCCCCTACCAGCACTCCTCACCTCCTGAATCATCCCAATGTTCGACGCCGCTTGGTAGCGAGAGTGGAGGAAAGAGGAGGCGGGGGAGGAGGGGGAAGCAGAAGGGCTTGGGTGAGGTGGTGTCTGTTCATGAGAAAAAGGAGGCAAAAACATCACCTTTCCCCCTCCTGCTGTTGTGCCGTGCAACGAGACGGCGGATCACAGAGGTGTATGATGAGATGTACCAAATTGTTCGTGCTAAAAGGAATGATACTGGCAGGGTTCACGAGTTCATTAACTGTTTGGTAGATGCAAGAAATGAACTGCTGCACAAGTCGGAGATGGTTCAAAGAAGCTGCGGAATAAAGAAGGCCTTACTATCCAACCCTTGTAGTCGCAGGGCTAACAGTTATGACCGCCTCTGCGAACAGCTGCATAAATTGGAAGCCGAGCACAAAAGGCTAAAGAAGGATGCGGATATCTACAACTATATTCAAGAGCAGCTTCAGATGTCAGAGTCATACAAACTGGTGATTGAGCTTAGTGCGTTGGTGGAGAANGCCAAACGTGANGATGCCCTTGCCACCGAGGCCGCAGAGATGACACTCGAGGAGCTGCTGGCTCAGGANAANANCGATGCCGNCTTCTGGCAGCGTCACAGGAAGCTGACCTCAATCNTACCC-AGTAGAGNTTGATAACTGACCGGGCGATTT-ANCATCGTC-ATAGTAGCCCGAACCCGT-ACCAGAANTTGTTCCTGGGGGAGCTTTTAATGTTGCTAGTTGCAACCGTGGTGTAATGCGCTTGCCAAGCTCTTGGGCGCCTGAAAGTCCAGAGTCCTTGACCATAAAACCTGAGAGATTCAGGTGGTTGGCTGACGACCAGCAAATGCTCTCATATATCCTATCTGGTACTTCGGCCATGAAGATTTCTTGCCTGTGGATGCCCTGATGGAATTGAGCTTTCTTCAATGCAAAAAA]
[+] EMBL CA764143 [GCTTGTGTGACCGGCTCCTACGGCCCTACCATTGAGGGTTCGCCTCCGATCTTCTGCCGGAACCCATAGCCATGAGGACTTCCCTTGTTCGTTTCTTCCTTACTATCCTCGCCAACACGTTTCTCCATTCCCCCTACCAGCACTCCTCACCTCCTGAATCATCCCAATGTTCGACGCCGCTTGGTAGCGAGAGTGGAGGAAAGAGGAGGCGGGGGAGGAGGGGGAAGCAGAAGGGCTTGGGTGAGGTGGTGTCTGTTCATGAGAAAAAGGAGGCAAAAACATCACCTTTCCCCCTCCTGCTGTTGTGCCGTGCAACGAGACGGCGGATCACAGAGGTGTATGATGAGATGTACCAAATTGTTCGTGCTAAAAGGAATGATACTGGCAGGGTTCACGAGTTCATTAACTGTTTGGTAGATGCAAGAAATGAACTGCTGCACAAGTCGGAGATGGTTCAAAGAAGCTGCGGAATAAAGAAGGCCTTACTATCCAACCCTTGTAGTCGCAGGGCTAACAGTTATGACCGCCTCTGCGAACAGCTGCATAAATTGGAAGCCGAGCACAAAAGGCTAAAGAAGGATGCGGATATCTACAACTATATTCAAGAGCAGCTTCAGATGTCAGAGTCATACAAACTGGTGATTGAGCTTAGTGCGTTGGTGGAGAANGCCAAACGTGANGATGCCCTTGCCACCGAGGCCGCAGAGATGACACTCGAGGAGCTGCTGGCTCAGGANAANANCGATGCCGNCTTCTGGCAGCGTCACAGGAAGCTGACCTCAATCNTACCC AGTAGAGNTTGATAACTGACCGGGCGATTT ANCATCGTC ATAGTAGCCCGAACCCGT ACCAGAANTTGTTCCTGGGGGA ]
[-] EMBL CF316779 [ ACAGTTATGACCGCCTCTGCGAACAGGTGCATAAATTGGAAGCCGAGCACAAAAGGCTAAAGAAGGATGCGGATATCTACAACTATATTCAAGAGCAGCTTCAGATGTCAGAGTCATACAAACTGTTGATTGAGCTTAGTGCGTTGGTGGAGAAGGCCGAACGTGAGGATGCCCTTGCCACCGAGGCCGCAGAGATGACATTCGAGGAGCTGCTGGCTCAGGAGAAGAGCGACGCCGCCTTCTGGCAGCGTCACAGGAAGCTGACCTCAATCTTACCCAAGTAGAGTTTGATAACTGACCGCGCGATTTCACCATCGTCAATAGTAGCCCGAACCCGTAACCAGAATTTGTTCCTGGTGGAGCTTTTAATGTTGCTAGTTGCAACCGTGGTGTAATGCGCTTGCCAAGCTCTTGGGCGCCTGAAAGTCCAGAGTCCTTGACCATAAAACCTGAGAGATTCAGGTGGTTGGCTGACGACCAGCAAATGCTCTCATATATCCTATCTGGTACTTCGGCCATGAAGATTTCTTGCCTGTGGATGCCCTGATGGAATTGAGCTTTCTTCAATGCAAAAAA]
consensusID : consensus_15239#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1036 fasta sequence
[CATGGACTAAGGAGTAGAAAGAGGGTTCGCCTCCGATCTTCTGCCGGAACCCATAGCCATGAGGACTTCCCTTGTTCGTTTCTTCCTTACTATCCTCGCCAACACGTTTCTCCATTCCCCCTACCAGCACTCCTCACCTCCTGAATCATCCCAATGTTCGACGCCGCTTGGTAGCGAGAGTGGAGGAAAGAGGAGGCGGGGGAGGAGGGGGAAGCAGAAGGGCTTGGGTGA-GGTGGTGTCTGTTCACGAGAAAAAGGAGGCAAAAACATCACCTTTCCCCCTCCTGCTGTTGTGCCGTGCAACGAGACGGCGGATCACAGAGGTGTATGATGAGATGTACCAAATTGTTCGTGCTAAAAGGAATGATACTGGCAAGGTTCACGAGTTCATTAACTGTTTGGTAGATGCAAGAAATGAACTGCTGCACAAGTCGGAGATGGTTCAAAGAAGCTGCAGAATAAAGAAGGCCTTACTATCCAACCCTTGTAGTCGCAGGGCTAACAGTTATGACCGCCTC-TGCGAACA-GGTGC-ATAAATTGGAA-GCCGAGCACAAAAGGCTAAAGAA-GGATGCGGATATC-T-AC-AACTATATTCAAGAGCAGCTTCAGATGTCAGAGTCAT-AC-AA-ACTGTTGATTGAGCTTAGTGCGTTGGTGGAGAAGGCC-GAACGTGAGGATGCCCTTGCCACCGAGGCCG-CAGAGATGACATTCGAGGAG-CTGCTGGCT-CA-GGAGAAGAGCGATGCCGCCTTCTGGCAGCGTCA-CA-GGAAGCTGACCTCAATCTTACCCA-AGTAGAGTTTGATAACTGA-CCGCGCGATTTCA-CCA-TCGTCA-ATAGTAGCCCGAACCCGTAACCA-GAA-TTTGTTCCTGGTGGAGCTTTTAATGTT-G-CTAGTTGCAA-CC--GTGGTGTAATGCGCTTGCCAAGCTCTTGGGCGCCTGAAAGTCCAGAGTCCTTGACCATAAAACCTGAGAGATTCAGGTGGTTGGCTGACGACCAGCAAATGCTCTCATATATCCTATCTGGTACTTCGGCCAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF313868 [CATGGACTAAGGAGTAGAAAGAGGGTTCGCCTCCGATCTTCTGCCGGAACCCATAGCCATGAGGACTTCCCTTGTTCGTTTCTTCCTTACTATCCTCGCCAACACGTTTCTCCATTCCCCCTACCAGCACTCCTCACCTCCTGAATCATCCCAATGTTCGACGCCGCTTGGTAGCGAGAGTGGAGGAAAGAGGAGGCGGGGGAGGAGGGGGAAGCAGAAGGGCTTGGGTGA GGTGGTGTCTGTTCACGAGAAAAAGGAGGCAAAAACATCACCTTTCCCCCTCCTGCTGTTGTGCCGTGCAACGAGACGGCGGATCACAGAGGTGTATGATGAGATGTACCAAATTGTTCGTGCTAAAAGGAATGATACTGGCAAGGTTCACGAGTTCATTAACTGTTTGGTAGATGCAAGAAATGAACTGCTGCACAAGTCGGAGATGGTTCAAAGAAGCTGCAGAATAAAGAAGGCCTTACTATCCAACCCTTGTAGTCGCAGGGCTAACAGTTATGACCGCCTC TGCGAACA GGTGC ATAAATTGGAA GCCGAGCACAAAAGGCTAAAGAA GGATGCGGATATC T AC AACTATATTCAAGAGCAGCTTCAGATGTCAGAGTCAT AC AA ACT ]
[+] EMBL CF337436 [ GGGTTCACCTCCGATCTTCTGCCGGAACCCATAGCCATGAGGACTTCCCTTGTTCGTTTCTTCCTTACTATCCTCGCCAACACGTTTCTCCATTCCCCCTACCAGCACTCCTCACCTCCTGAATCATCCCAATGTTCGACGCCGCTTGGTAGCGAGAGTGGAGGAAAGAGGAGGCGGGGGAGGAGGGAGAAGCAGAAGGGCTTGGGTGAGGGTGGTGTCTGTTCACGAGAAAAAGGAGGCAAAAACATCACCTTTCCCCCTCCTGCTGTTGTGCCGTGCAACGAGACGGCGGATCACAGAGGTGTATGATGAGATGTACCAAATTGTTCGTGCTAAAAGGAATGATACTGGCAAGGTTCACGAGTTCATTAACTGTTTGGTAGATGCAAGAAATGAACTGCTGCACAAGTCGGAGATGGTTCAAAGAAGCTGCAGAATAAAGAAGGCCTTACTATCCAACCCTTGTAGTCGCAGGGCTAACAGTTATGACCGCCTC TGCGAACA GGTGC ATAAATTGGAA GCCGAGCACAAAAGGCTAAAGAA GGATGCGGATATC T AC AACTATATTCAAGAGCAGCTTCAGATGTCAGAGTCAT AC AA ACT ]
[+] EMBL AK102992 [ CCTCCGATCTTCTGCCGGAACCCATAGCCATGAGGACTTCCCTTGTTCGTTTCTTCCTTACTATCCTCGCCAACACGTTTCTCCATTCCCCCTACCAGCACTCCTCACCTCCTGAATCATCCCAATGTTCGACGCCGCTTGGTAGCGAGAGTGGAGGAAAGAGGAGGCGGGGGAGGAGGGGGAAGCAGAAGGGCTTGGGTGA GGTGGTGTCTGTTCACGAGAAGAAGGAGGCAAAAACATCACCTTTCCCCCTCCTGCTGTTGTGCCGTGCAACGAGACGGCGGATCACAGAGGTGTATGATGAGATGTACCAAATTGTTCGTGCTAAAAGGAATGATACTGGCAAGGTTCACGAGTTCATTAACTGTTTGGTAGATGCAAGAAATGAACTGCTGCACAAGTCGGAGATGGTTCAAAGAAGCTGCAGAATAAAGAAGGCCTTACTATCCAACCCTTGTAGTCGCAGGGCTAACAGTTATGACCGCCTC TGCGAACA GGTGC ATAAATTGGAA GCCGAGCACAAAAGGCTAAAGAA GGATGCGGATATC T AC AACTATATTCAAGAGCAGCTTCAGATGTCAGAGTCAT AC AA ACTGTTGATTGAGCTTAGTGCGTTGGTGGAGAAGGCC GAACGTGAGGATGCCCTTGCCACCGAGGCCG CAGAGATGACATTCGAGGAG CTGCTGGCT CA GGAGAAGAGCGACGCCGCCTTCTGGCAGCGTCA CA GGAAGCTGACCTCAATCTTACCCA AGTAGAGTTTGATAACTGA CCGCGCGATTTCA CCA TCGTCA ATAGTAGCCCGAACCCGTAACCA GAA TTTGTTCCTGGTGGAGCTTTTAATGTT G CTAGTTGCAA CC GTGGTGTAATGCGCTTGCCAAGCTCTTGGGCGCCTGAAAGTCCAGAGTCCTTGACCATAAAACCTGAGAGATTCAGGTGGTTGGCTGACGACCAGCAAATGCTCTCATATATCCTATCTGG ]
[+] EMBL CF316778 [ CTTCCTTACTATCCTCGCCAACACGTTTCTCCATTCCCCCTACCAGCACTCCTCACCTCCTGAATCATCCCAATGTTCGACGCCGCTTGGTAGCGAGAGTGGAGGAAAGAGGAGGCGGGGGAGGAGGGGGAAGCAGAAGGGCTTGGGTGA GGTGGTGTCTGTTCACGAGAAAAAGGAGGCAAAAACATCACCTTTCCCCCTCCTGCTGTTGTGCCGTGCAACGAGACGGCGGATCACAGAGGTGTATGATGAGATGTACCAAATTGTTCGTGCTAAAAGGAATGATACTGGCAAGGTTCACGAGTTCATTAACTGTTTGGTAGATGCAAGAAATGAACTGCTGCACAAGTCGGAGATGGTTCAAAGAAGCTGCAGAATAAAGAAGGCCTTACTATCCAACCCTTGTAGTCGCAGGGCTAACAGTTATGACCGCCTC TGCGAACA GGTGC ATAAATTGGAA GCCGAGCACAAAAGGCTAAAGAA GGATGCGGATATC T AC AACTATATTCAAGAGCAGCTTCAGATGTCAGAGTCAT AC AA ACTGTTGATTGAGCTTA ]
[-] EMBL CF320135 [ GTTCAAAGAAGCTGCAGAATAAAGAAGGCCTTACTATCCAACCCTTGTAGTCGCAGGGCTAACAGTTATGACCGCCTC TGCGAACA GGTGC ATAAATTGGAA GCCGAGCACAAAAGGCTAAAGAA GGATGCGGATATC T AC AACTATATTCAAGAGCAGCTTCAGATGTCAGAGTCAT AC AA ACTGTTGATTGAGCTTAGTGCGTTGGTGGAGAAGGCC GAACGTGAGGATGCCCTTGCCACCGAGGCCG CAGAGATGACATTCGAGGAG CTGCTGGCT CA GGAGAAGAGCGACGCCGCCTTCTGGCAGCGTCA CA GGAAGCTGACCTCAATCTTACCCA AGTAGAGTTTGATAACTGA CCGCGCGATTTCA CCA TCGTCA ATAGTAGCCCGAACCCGTAACCA GAA TTTGTTCCTGGTGGAGCTTTTAATGTT G CTAGTTGCAA CC GTGGTGTAATGCGCTTGCCAAGCTCTTGGGCGCCTGAAAGTCCAGAGTCCTTGACCATAAAACCTGAGAGATTCAGGTGGTTGGCTGACGACCAGCAAATGCTCTCATATATCCTATCTGGTA AAAAAAAAAAAA ]
[+] EMBL BI800243 [ aGCCTTACTATCCAACCCTTGTAGTCGCAGGGCTAACAGTTATGACCGCCTC TGCGAACA GGTGC ATAAATTGGAA GCCGAGCAC AAAGGCTAAAGAA GGATGCGGATATC T AC AACTATATTCAAGAGCAGCTTCAGATGTCAGAGTCAT AC A ACTGTTGATTGAGCTTAGTGCGTTGGTGGAGAAGGCC AACGTGAGGATGCCCTTGCCACCGAGGCCG CAGAGATGACATTCGAGGAG CTGCTGGCT CA GGAGAAGAGCGATGCCGCCTTCTGGCAGCGTCA CA GGAAGCTGACCTCAATCTTACCCA AGTAGAGTTTGATAACTGA CCGCGCGATTTCA CCA TCGTCA ATAGTAGCCCGAACCCGTAACCA GAA TTTGTTCCTGGTGGAGCTTTTAATGTT G CTAGTTGCAA CC ATGGTGTAATGCGCTTCCCAAGCTCTTGGGCGCCTGAAAGTCCAGAGTCCTTGACCATAAAACCTGAGAGATTCAGGTGGTTGGCTGACGACCAGCAAAaa ]
[-] EMBL CF317977 [ GCTAACAGTTATGACCGCCTC TGCGAACA GGTGC ATAAATTGGAA GCCGAGCACAAAAGGCTAAAGAA GGATGCGGATATC T AC AACTATATTCAAGAGCAGCTTCAGATGTCAGAGTCAT AC AA ACTGTTGATTGAGCTTAGTGCGTTGGTGGAGAAGGCC GAACGTGAGGATGCCCTTGCCACCGAGGCCG CAGAGATGACATTCGAGGAG CTGCTGGCT CA GGAGAAGAGCGACGCCGCCTTTTGGCAGCGTCA CA GGAAGCTGACCTCAATTTTACCCA AGTAGAGTTTGATAACTGA CCGCGCGATTTCA CCA TCGTCA ATAGTAGCCCGAACCCGTAACCA GAA TTTGTTCCTGGTGGAGCTTTTAATGTT G CTAGTTGCAA CC GTGGTGTAATGCGCTTGCCAAGCTCTTGGGCGCCTGAAAGTCCAGAGTCCTTGACCATAAAACCTGAGAGATTCAGGTGGTTGGCTGACGACCAGCAAATGCTCTCATATATCCTATCTGGTACTTCGGCCAAAAAAAAA ]
[+] EMBL BI799803 [ TATGACCGCCTC TGCGAACA GGTGC ATAAATTGGAA GCCGAGCACAAAAGGCTAAAGAA GGATGCGGATATC T ACAAACTATATTCAAGAGCAGCTTCAGATGTCAGAGTCAT AC AA ACTGTTGATTGAGCTTAGTGCGTTGGTGGAGAAGGCC AAACGTGAGGATGCCCTTGCCACCGAGGCCG CAGAGATGACATTCGAGGAG CTGCTGGCT CA GGAGAAGAGCGATGCCGCCTTCTGGCAGCGTCA CA GGAAGCTGACCTCAATCTTACCCA AGTAGAGTTTGATAACTGA CCGCGCGATTTCA CCA TCGTCA ATAGTAGCCCGAACCCGTAACCA GAA TTTGTTCCTGGTGGAGCTTTTAATGTT G CTAGTTGCAA CC ATGGTGTAATGCGCTTGCCAAGCTCTTGGGCGCCTGAAAGTCCAGAGTCCTTGACCATAAAACCTGAGAGATTCAGGTGGTTGGCTGACGACCAGCAAATGCTCTCATATATCCTATCTGGTACTTCGGCCAAAA ]
[+] EMBL BI797124 [ acCCGCCTCGTGCGAACAGGGTGCAATGAATTGGAACGCCGAGCACAAAAGGCTAAAGAAGGGATGCGGATATC T AC AACTATATTCAAGA CAGCTTCAGATCTCAGAGTCAT ACAAA ACTGTTGATTGAGCTTAGTGCGTTGGTGGAGAAGGCC AAACGTGAGGATGCCCTT CCACCGA GCC CAGAGATGACATTCGAGGAG CTGCTGGCT CA GGAGAAGAGCGATCCAACCTTCTGGCAGCGTCA CA GGAAGCTGACCTC ATCTTACCCA AGTAGAGTTTGATAACTGA CCGCGCGATTTCA CCA TCGTCA ATAGTAGCCCGAACCCGTAACCA GAACTTTGTTCCTGGTGGAGCTTTTAATGTTCGCCTAGTTCCAA CC ATGGTGTAATGCGCTTGCCAAGCTCTTGGGCGCCTGAAAGTCCAGAGTCCTTGACCATAAAACCTGAGAGATTCA GT GTTGCCTGACGACCAGCAAATGCTCTCATATATCCTATCTGGTACTTCGcc ]
[+] EMBL BI798739 [ GCGAACA GGTGC ATAAATTGGAA CCGAGCACAAAAGGCTAAAGAA GGAT CGGATATC T AC AACTATATTCAAGACCAGCTTCAGATGTCAGAGTCAT AC CA ACTGTTGATTGAGCTTAGTGC TTGGTGGAGAAGCCCACAACGTGAGGATGCCCTTGCCACCGAGGCCGCCAGAGATGACATTCGAGGAG CTGCTGGCT CA GGAGAAGAGCGATGCCCCCTTCTGGCAGCGTCA CA GGAAGCTGACCTCAATCTTACCCA AGTAGAGTTTGATAACTGA CCGCGCGATTTCA CCA TCGTCA ATAGTAGCCCGAACCCGTAACCA GAA TTTGTTCCTGGTGGAGCTTTTAATGTT G CTAGTTGCAA CCCACTGGTGTAATGCGCTTGCCAAGCTCTTGGGCGCCTGAAAGTCCAGAGTCCTTGACCATAAAACCTGAGAGATTCAGGTGGTTGGCTGACGACCAGCAAATGCTCTCATATATCCTATCTGGTACTTCGGCCCAAAAAAAAAA ]
[+] EMBL CF197315 [ TAAATTGGAA GCCGAGCACAAAAGGCTAAAGAA GGATGCGGATATC T AC AACTATATTCAAGAGCAGCTTCAGATGTCAGAGTCAT AC AA ACTGTTGATTGAGCTTAGTGCGTTGGTGGAGAAGGCC AAACGTGAGGATGCCCTTGCCACCGAGGCCG CAGAGATGACATTCGAGGAG CTGCTGGCT CA GGAGAAGAGCGATGCCGCCTTCTGGCAGCGTCA CA GGAAGCTGACCTCAATCTTACCCA AGTAGAGTTTGATAACTGA CCGCGCGATTTCA CCA TCGTCA ATAGTAGCCCGAACCCGTAACCA GAA TTTGTTCCTGGTGGAGNNNNNAATGTT G CTAGTTGCAA CC ATGGnnnn ]
[+] EMBL BI798332 [ TAAAGAA GGAT CGGATATC T AC AACTATATTCAAGACAAGCTTCAGATGTCAGAGTCAT AC A ACTGTTGATTGAGCTTAGTGCGTTGGTGGAGAAGGCC AAACGTGAGGATGCCCTTGCCACCGAGGCCG CAGAGATGACATTCGAGGAG CTGCTGGCT CA GGAGAAGAGCGAT CCGCCTTCTGGCAGCGTCA CA GGAAGCTGACCTCAATCTTACCCA AGTAGAGTTTGATAACTGA CCGCGCGATTTCA CCA TCGTCA ATAGTAGCCCGAACCCGTAACCA GAA TTTGTTCCTGGTGGAGCTTTTAATGTT G CTAGTTGCAACCC ATGGTGTAATGCGCTTGCCAAGCTCTTGGGCGCCTGAAAGTCCAGAGTCCTTGACCATAAAACCTGAGAGATTCAGGTGGTTGGCTGACGACCA C AATGCTCTCATATATCCTATCTGGTACTTC GCCAAAA ]
[+] EMBL BI797560 [ AGAA GGATCCGGATATCGTCAC CACTATATTCAAGACCAGCTTCAGATGTCAGAGTCATCAC CA ACTGTTGATTGAGCTTAGTGCCTTGGTGGAGAAGGCC CAACGTGAGGATGCCCTTGCCCCCGAGGCCC CAGAGATGACATTCGAGGAGCCTGCTGGCTCCACGGAGAAGAGCGATGCCCCCTTCTGGCAGCGTCACCACGGAAGCTGACCTCAATCTTACCCACAGTAGAGTTTGATAACTGACCCGCGCGATTTCACCCACTCGTCACATAGTAGCCCGAACCCGTAACCACGAA TTTGTTCCTGGTGGAGCTTTTAATGTT G CTAGTTGCCA CCA CTGGTGTAATGCGCTTGCC AGCTCTTGGGCGCCTGAAAGTCCCGAGTCCTTGACCATAAAACCTGAGAGATTCAGGTGGTTGGCTGACGACCAGCCAATGCTCTCATATATCCTATCTGGTACTTCGGCCCTGAAAAAAAAAA ]
[+] EMBL CB667437 [ AT AC AACCCTTTTGATTGAGCTTAGTGCGTTGGTGGAGAAGGCC GAACGTGAGGATGCCCTTGCCACCGAGGCCG CAGAGATGACATTCGAGGAG CTGCTGGCT CA GGAGAAGAGCGACGCCGCCTTCTGGCAGCGTCA CA GGAAGCTGACCTCAATCTTACCCA AGTAGAGTTTGATAACTGA CCGCGCGATTTCA CCA TCGTCA ATAGTAGCCCGAACCCGTAACCA GAA TTTGTTCCTGGTGGAGCTTTTAATGTT G CTAGTTGCAA CC GTGGTGTAATGCGCTTGCCAAGCTCTTGGGCGCCTGAAAGTCCAGAGTCCTTGACCATAAAACCTGAGAGATTCAGGTGGTTGGCTGACGACCAGCAAATGCTCTCATATATCCTATCTGGTAC ]
[+] EMBL AU032813 [ AGTTTGATAACTGA CCGCGCGATTTCA CCA TCGTCA ATAGTAGCCCGAACCCGTAACCA GAA TTTGTTCCTGGTGGAGCTTTTAATGTT G CTAGTTNCAA CC GTGGTGTAATGCGCTTGCCAAGCTCTTGGGCGCCTGAAAGTCCAGAGTCCTTGNCCATAAAACCTGAGAGATTCAGGTGGTTGGCTGACGACCAGCAAATGCTCTCATATATCCTATCTGGTACTTCGGCCAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15239#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 984 fasta sequence
[CATGGACTGAGGAGTAGAAACGGAACCCATAGCCATGAGGGCTTCCCCTGTTCGTTTCCTCCTTACTATCCTCGCCAACACGTTTCTCCATTCCCCCTACCAGCACTCCTCACCTCCTGAATCATCCCAATGTTCGACGCCGCTTGGTAGCGAGAGTGGAGGAAAGAGGAGGCGGGGGAGGAGGGGGAAGCAGAAGGGCTTGGGTGAGGTGGTGTCTGTTCACGAGAAAAAGGAGGCAAAAACATCACCTTTCCCCCTCCTGCTGTTGTGCCGTGCAACGAGACGGCGGATCACAGAGGTGTATGATGAGATGTACCAAATTGTTCGTGCTAAAAGGAATGATACTGGCAAGGTTCACGAGTTCATTAACTGTTTGGTAGATGCAAGAAATGAACTGCTGCACAAGTCGGAGATGGTTCAAAGAAGCTGCAGAATAAAGAAGGCCTTACTATCCAACCCTTGTAGTCGCAGGGCTAACAGTTATGACCGCCTCTGCGAACAGGTGCATAAATTGGAAGCCGAGCACAAAAGGCTAAAGAAGGATGCGGATATCTACAACTATATTCAAGAGCAGCTTCAGATGTCAGAGTCATACAAACTGTTGATTGAGCTTAGTGCGTTGGTGGAGAAGGCCGAACGTGAGGATGCCCTTGCCACCGAGGCCGCAGAGATGACATTCGAGGAGCTGCTGGCTCAGGAGAAGAGCGACGCCGCCTTTTGGCAGCGTCACAGGAAGCTGACCTCAATTTTACCCAAGTAGAGTTTGATAACTGACCGCGCGATTTCACCATCGTCAATAGTAGCCCGAACCCGTAACCAGAATTTGTTCCTGGTGGAGCTTTTAATGTTGCTAGTTGCAACCGTGGTGTAATGCGCTTGCCAAGCTTTTGGGCGCCTGAAAGTCCAGAGTCCTTGACCATAAAACCTGAGAGATTCAGGTGGTTGGCTGACGACCAGCAAATGCTTTCATAAAAAAAAAAAAAA]
[+] EMBL CF320136 [CATGGACTGAGGAGTAGAAACGGAACCCATAGCCATGAGGGCTTCCCCTGTTCGTTTCCTCCTTACTATCCTCGCCAACACGTTTCTCCATTCCCCCTACCAGCACTCCTCACCTCCTGAATCATCCCAATGTTCGACGCCGCTTGGTAGCGAGAGTGGAGGAAAGAGGAGGCGGGGGAGGAGGGGGAAGCAGAAGGGCTTGGGTGAGGTGGTGTCTGTTCACGAGAAAAAGGAGGCAAAAACATCACCTTTCCCCCTCCTGCTGTTGTGCCGTGCAACGAGACGGCGGATCACAGAGGTGTATGATGAGATGTACCAAATTGTTCGTGCTAAAAGGAATGATACTGGCAAGGTTCACGAGTTCATTAACTGTTTGGTAGATGCAAGAAATGAACTGCTGCACAAGTCGGAGATGGTTCAAAGAAGCTGCAGAATAAAGAAGGCCTTACTATCCAACCCTTGTAGTCGCAGGGCTAACAGTTATGACCGCCTCTGCGAACAGGTGCATAAATTGGAAGCCGAGCACAAAAGGCTAAAGAAGGATGCGGATATCTACAACTATATTCAAGAGCAGCTTCAGATGTCAGAGTCATACAAACTGTTGATTGAGCTTAG ]
[-] EMBL CF313867 [ AGTTATGACCGCCTCTGCGAACAGGTGCATAAATTGGAAGCCGAGCACAAAAGGCTAAAGAAGGATGCGGATATCTACAACTATATTCAAGAGCAGCTTCAGATGTCAGAGTCATACAAACTGTTGATTGAGCTTAGTGCGTTGGTGGAGAAGGCCGAACGTGAGGATGCCCTTGCCACCGAGGCCGCAGAGATGACATTCGAGGAGCTGCTGGCTCAGGAGAAGAGCGACGCCGCCTTTTGGCAGCGTCACAGGAAGCTGACCTCAATTTTACCCAAGTAGAGTTTGATAACTGACCGCGCGATTTCACCATCGTCAATAGTAGCCCGAACCCGTAACCAGAATTTGTTCCTGGTGGAGCTTTTAATGTTGCTAGTTGCAACCGTGGTGTAATGCGCTTGCCAAGCTTTTGGGCGCCTGAAAGTCCAGAGTCCTTGACCATAAAACCTGAGAGATTCAGGTGGTTGGCTGACGACCAGCAAATGCTTTCATAAAAAAAAAAAAAA]
consensusID : consensus_15239#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence
[GGATTCGGCCGATCTATATTCTAGNACATCTTCNGANNTCAGAGTCNNNCAACCTGTTGANTGANCTTAGTGCGTTGGTGGAGAAGGCCGAACGTGAGGATGCCCTTGCCACCGAGGNCGCAGAGATGACATTCGANGAGCTGCTGGCTCAGGAGAAGAGCGACGCCGCCTTCTGGCAGCGTCACAGGAAGCTGACCTCAATCTTACCCAAGTNGAGTTTGATAACTGACCGCGCGATTTCACCATCGTCAATAGTAGCCCGAACCCGTAACCAGAATTTGTTCCTGGTGGAGCTTTTAATGTTGCTAGTTGCAACCGTGGTGTNATGCGCTTGCCAAGCTCTTGGGCGCCTGAAAGTCCAGANTCCTTGACCATAAAACCTGAGANATTCANGTGGTTGGCTGACGACCAGCAAATGCTCTCATATATCCTATCTGGTACTT]
[+] EMBL AA752987 [GGATTCGGCCGATCTATATTCTAGNACATCTTCNGANNTCAGAGTCNNNCAACCTGTTGANTGANCTTAGTGCGTTGGTGGAGAAGGCCGAACGTGAGGATGCCCTTGCCACCGAGGNCGCAGAGATGACATTCGANGAGCTGCTGGCTCAGGAGAAGAGCGACGCCGCCTTCTGGCAGCGTCACAGGAAGCTGACCTCAATCTTACCCAAGTNGAGTTTGATAACTGACCGCGCGATTTCACCATCGTCAATAGTAGCCCGAACCCGTAACCAGAATTTGTTCCTGGTGGAGCTTTTAATGTTGCTAGTTGCAACCGTGGTGTNATGCGCTTGCCAAGCTCTTGGGCGCCTGAAAGTCCAGANTCCTTGACCATAAAACCTGAGANATTCANGTGGTTGGCTGACGACCAGCAAATGCTCTCATATATCCTATCTGGTACTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15239#0 GCTTGTGTGACCGGCTCCTACGGCCCTACCATTGAGGGTTCGCCTCCGATCTTCTGCCGG 60
consensus_15239#2 -------------------------------------CATGGACTGAGGAGTAGAAACGG 23
consensus_15239#1 -----------CATGGACTAAGGAGTAGAAA--GAGGGTTCGCCTCCGATCTTCTGCCGG 47
consensus_15239#3 ------------------------------------------------------------
consensus_15239#0 AACCCATAGCCATGAGGACTTCCCTTGTTCGTTTCTTCCTTACTATCCTCGCCAACACGT 120
consensus_15239#2 AACCCATAGCCATGAGGGCTTCCCCTGTTCGTTTCCTCCTTACTATCCTCGCCAACACGT 83
consensus_15239#1 AACCCATAGCCATGAGGACTTCCCTTGTTCGTTTCTTCCTTACTATCCTCGCCAACACGT 107
consensus_15239#3 ------------------------------------------------------------
consensus_15239#0 TTCTCCATTCCCCCTACCAGCACTCCTCACCTCCTGAATCATCCCAATGTTCGACGCCGC 180
consensus_15239#2 TTCTCCATTCCCCCTACCAGCACTCCTCACCTCCTGAATCATCCCAATGTTCGACGCCGC 143
consensus_15239#1 TTCTCCATTCCCCCTACCAGCACTCCTCACCTCCTGAATCATCCCAATGTTCGACGCCGC 167
consensus_15239#3 ------------------------------------------------------------
consensus_15239#0 TTGGTAGCGAGAGTGGAGGAAAGAGGAGGCGGGGGAGGAGGGGGAAGCAGAAGGGCTTGG 240
consensus_15239#2 TTGGTAGCGAGAGTGGAGGAAAGAGGAGGCGGGGGAGGAGGGGGAAGCAGAAGGGCTTGG 203
consensus_15239#1 TTGGTAGCGAGAGTGGAGGAAAGAGGAGGCGGGGGAGGAGGGGGAAGCAGAAGGGCTTGG 227
consensus_15239#3 ------------------------------------------------------------
consensus_15239#0 GTGAGGTGGTGTCTGTTCATGAGAAAAAGGAGGCAAAAACATCACCTTTCCCCCTCCTGC 300
consensus_15239#2 GTGAGGTGGTGTCTGTTCACGAGAAAAAGGAGGCAAAAACATCACCTTTCCCCCTCCTGC 263
consensus_15239#1 GTGAGGTGGTGTCTGTTCACGAGAAAAAGGAGGCAAAAACATCACCTTTCCCCCTCCTGC 287
consensus_15239#3 ------------------------------------------------------------
consensus_15239#0 TGTTGTGCCGTGCAACGAGACGGCGGATCACAGAGGTGTATGATGAGATGTACCAAATTG 360
consensus_15239#2 TGTTGTGCCGTGCAACGAGACGGCGGATCACAGAGGTGTATGATGAGATGTACCAAATTG 323
consensus_15239#1 TGTTGTGCCGTGCAACGAGACGGCGGATCACAGAGGTGTATGATGAGATGTACCAAATTG 347
consensus_15239#3 ------------------------------------------------------------
consensus_15239#0 TTCGTGCTAAAAGGAATGATACTGGCAGGGTTCACGAGTTCATTAACTGTTTGGTAGATG 420
consensus_15239#2 TTCGTGCTAAAAGGAATGATACTGGCAAGGTTCACGAGTTCATTAACTGTTTGGTAGATG 383
consensus_15239#1 TTCGTGCTAAAAGGAATGATACTGGCAAGGTTCACGAGTTCATTAACTGTTTGGTAGATG 407
consensus_15239#3 ------------------------------------------------------------
consensus_15239#0 CAAGAAATGAACTGCTGCACAAGTCGGAGATGGTTCAAAGAAGCTGCGGAATAAAGAAGG 480
consensus_15239#2 CAAGAAATGAACTGCTGCACAAGTCGGAGATGGTTCAAAGAAGCTGCAGAATAAAGAAGG 443
consensus_15239#1 CAAGAAATGAACTGCTGCACAAGTCGGAGATGGTTCAAAGAAGCTGCAGAATAAAGAAGG 467
consensus_15239#3 ------------------------------------------------------------
consensus_15239#0 CCTTACTATCCAACCCTTGTAGTCGCAGGGCTAACAGTTATGACCGCCTCTGCGAACAGC 540
consensus_15239#2 CCTTACTATCCAACCCTTGTAGTCGCAGGGCTAACAGTTATGACCGCCTCTGCGAACAGG 503
consensus_15239#1 CCTTACTATCCAACCCTTGTAGTCGCAGGGCTAACAGTTATGACCGCCTCTGCGAACAGG 527
consensus_15239#3 ------------------------------------------------------------
consensus_15239#0 TGCATAAATTGGAAGCCGAGCACAAAAGGCTAAAGAAGGATGCGGATATCTACAACTATA 600
consensus_15239#2 TGCATAAATTGGAAGCCGAGCACAAAAGGCTAAAGAAGGATGCGGATATCTACAACTATA 563
consensus_15239#1 TGCATAAATTGGAAGCCGAGCACAAAAGGCTAAAGAAGGATGCGGATATCTACAACTATA 587
consensus_15239#3 -------------------------------------GGATTCGGCCG-----ATCTATA 18
**** *** * *****
consensus_15239#0 TTCAAGAGCAGCTTCAGATGTCAGAGTCATACAAACTGGTGATTGAGCTTAGTGCGTTGG 660
consensus_15239#2 TTCAAGAGCAGCTTCAGATGTCAGAGTCATACAAACTGTTGATTGAGCTTAGTGCGTTGG 623
consensus_15239#1 TTCAAGAGCAGCTTCAGATGTCAGAGTCATACAAACTGTTGATTGAGCTTAGTGCGTTGG 647
consensus_15239#3 TTCTAGNACATCTTCNGANNTCAGAGTCNNNCAACCTGTTGANTGANCTTAGTGCGTTGG 78
*** ** ** **** ** ******** *** *** *** *** *************
consensus_15239#0 TGGAGAANGCCAAACGTGANGATGCCCTTGCCACCGAGGCCGCAGAGATGACACTCGAGG 720
consensus_15239#2 TGGAGAAGGCCGAACGTGAGGATGCCCTTGCCACCGAGGCCGCAGAGATGACATTCGAGG 683
consensus_15239#1 TGGAGAAGGCCGAACGTGAGGATGCCCTTGCCACCGAGGCCGCAGAGATGACATTCGAGG 707
consensus_15239#3 TGGAGAAGGCCGAACGTGAGGATGCCCTTGCCACCGAGGNCGCAGAGATGACATTCGANG 138
******* *** ******* ******************* ************* **** *
consensus_15239#0 AGCTGCTGGCTCAGGANAANANCGATGCCGNCTTCTGGCAGCGTCACAGGAAGCTGACCT 780
consensus_15239#2 AGCTGCTGGCTCAGGAGAAGAGCGACGCCGCCTTTTGGCAGCGTCACAGGAAGCTGACCT 743
consensus_15239#1 AGCTGCTGGCTCAGGAGAAGAGCGATGCCGCCTTCTGGCAGCGTCACAGGAAGCTGACCT 767
consensus_15239#3 AGCTGCTGGCTCAGGAGAAGAGCGACGCCGCCTTCTGGCAGCGTCACAGGAAGCTGACCT 198
**************** ** * *** **** *** *************************
consensus_15239#0 CAATCNTACCCA-GTAGAGNTTGATAACTGACCGGGCGATTT-ANCATCGTCA-TAGTAG 837
consensus_15239#2 CAATTTTACCCAAGTAGAGTTTGATAACTGACCGCGCGATTTCACCATCGTCAATAGTAG 803
consensus_15239#1 CAATCTTACCCAAGTAGAGTTTGATAACTGACCGCGCGATTTCACCATCGTCAATAGTAG 827
consensus_15239#3 CAATCTTACCCAAGTNGAGTTTGATAACTGACCGCGCGATTTCACCATCGTCAATAGTAG 258
**** ****** ** *** ************** ******* * ******** ******
consensus_15239#0 CCCGAACCCGTA-CCAGAANTTGTTCCTGGGGGAGCTTTTAATGTTGCTAGTTGCAACCG 896
consensus_15239#2 CCCGAACCCGTAACCAGAATTTGTTCCTGGTGGAGCTTTTAATGTTGCTAGTTGCAACCG 863
consensus_15239#1 CCCGAACCCGTAACCAGAATTTGTTCCTGGTGGAGCTTTTAATGTTGCTAGTTGCAACCG 887
consensus_15239#3 CCCGAACCCGTAACCAGAATTTGTTCCTGGTGGAGCTTTTAATGTTGCTAGTTGCAACCG 318
************ ****** ********** *****************************
consensus_15239#0 TGGTGTAATGCGCTTGCCAAGCTCTTGGGCGCCTGAAAGTCCAGAGTCCTTGACCATAAA 956
consensus_15239#2 TGGTGTAATGCGCTTGCCAAGCTTTTGGGCGCCTGAAAGTCCAGAGTCCTTGACCATAAA 923
consensus_15239#1 TGGTGTAATGCGCTTGCCAAGCTCTTGGGCGCCTGAAAGTCCAGAGTCCTTGACCATAAA 947
consensus_15239#3 TGGTGTNATGCGCTTGCCAAGCTCTTGGGCGCCTGAAAGTCCAGANTCCTTGACCATAAA 378
****** **************** ********************* **************
consensus_15239#0 ACCTGAGAGATTCAGGTGGTTGGCTGACGACCAGCAAATGCTCTCATATATCCTATCTGG 1016
consensus_15239#2 ACCTGAGAGATTCAGGTGGTTGGCTGACGACCAGCAAATGCTTTCATAAAAAAAAAAAAA 983
consensus_15239#1 ACCTGAGAGATTCAGGTGGTTGGCTGACGACCAGCAAATGCTCTCATATATCCTATCTGG 1007
consensus_15239#3 ACCTGAGANATTCANGTGGTTGGCTGACGACCAGCAAATGCTCTCATATATCCTATCTGG 438
******** ***** *************************** ***** * *
consensus_15239#0 TACTTCGGCCATGAAGATTTCTTGCCTGTGGATGCCCTGATGGAATTGAGCTTTCTTCAA 1076
consensus_15239#2 A----------------------------------------------------------- 984
consensus_15239#1 TACTTCGGCCAAAAAAAAAAAAAAAAAAA------------------------------- 1036
consensus_15239#3 TACTT------------------------------------------------------- 443
consensus_15239#0 TGCAAAAAA 1085
consensus_15239#2 ---------
consensus_15239#1 ---------
consensus_15239#3 ---------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||