cluster # 15246

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Oryza sativa
cluster # 15246 cluster # 15246 Sequences # 20 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_15246#0 length = 934 sequences # 10
consensus_15246#1 length = 519 sequences # 1

consensus_15246#2 length = 488 sequences # 6
consensus_15246#3 length = 463 sequences # 2
consensus_15246#4 length = 253 sequences # 1

consensusID : consensus_15246#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 934
fasta sequence

                              [CCGCCCACGCNTCCGGTACGTGTGGTGGTAGGAGAGGGAATCCATCCATGGTGATGGACGCAGCTAGAGCGGTGGCGATGCCGTCGCTGTCGCCGGCCACCGTCGCGGCGAGGCCGAGCAGCCGCCGCCTTCACAAGGTCGCCGCCATGGCCACCCAGAAGCCCACCTCCGGCACAAGAAGGGGGACGACGGTGTACTTCCCGGTGGGGGAGCCGGGGCCGAGGCAGACGACGAGCGGGAAGGCGGCGGCGC-CGCCGGTG-AAGCTGC-TGACGAACGTGGAGAAGCTGCGGCTGC-TGACGAAGGCGGAGAAGGCGGGGCTCCTGTCGGCGGCGGAGCGCGCCGGGCTGTCGCTGTCGGCGGTGGAGCGGCTGGGCCTGTTGTCCAAGGCGGAGGAGCTGGAGGTGCTGTCGGCGGCGACCGACCCGGGCACCCCCGGCGCGCTGC-TC-GGCGTCGCGCTGCTGCTGCTCGCCGCCGGCCCCGCC-GTC-GTCTACCTCGTCCCGGA-GGAGTACCCATGGGAGGTCGCCGTCCAGGCCGTGGTCGCGCTCGCCTGCGTCGTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGATTAATTACCACTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCAATTACTGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAAATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAATGGCTTGGCAAGGTTAATTTACCTAGCTGATGTTGATTAGGATGTGACGTGCATACGTATGAGTATGTATAAAACATGCTATATTTATAAATTTTTTTCTCTAAAAAAAAAAAAAAAA]

[+] EMBL OSS14129A            [CCGCCCACGCNTCCGGTACGTNTGGTGGTAGGAGAGGGAATCCATCCATGGTGATGGACGCAGCTAGAGCGGTGGCGATGCCGTCNCTGTCGCCGGCCACCGTCGCGGCGAGGCCGAGCAGTCGCCGCCTTCACAAGGTCGCCGCCATGGCCACCCAGAAGCCCACCTCCGGCACAANAAGGGGGACGACGGTNTACTTCCCGGTGGGGGAGCCGGGGCCGAGGCAGACGACGAGCGGGAAGACGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AK059885             [        gagaggtGTACGTGTGGTGGTAGGAGAGGGAATCCATCCATGGTGATGGACGCAGCTAGAGCGGTGGCGATGCCGTCGCTGTCGCCGGCCACCGTCGCGGCGAGGCCGAGCAGCCGCCGCCTTCACAAGGTCGCCGCCATGGCCACCCAGAAGCCCACCTCCGGCACAAGAAGGGGGACGACGGTGTACTTCCCGGTGGGGGAGCCGGGGCCGAGGCAGACGACGAGCGGGAAGGCGGCGGCGC CGCCGGTG AAGCTGC TGACGAACGTGGAGAAGCTGCGGCTGC TGACGAAGGCGGAGAAGGCGGGGCTCCTGTCGGCGGCGGAGCGCGCCGGGCTGTCGCTGTCGGCGGTGGAGCGGCTGGGCCTGTTGTCCAAGGCGGAGGAGCTGGAGGTGCTGTCGGCGGCGACCGACCCGGGCACCCCCGGCGCGCTGC TC GGCGTCGCGCTGCTGCTGCTCGCCGCCGGCCCCGCC GTC GTCTACCTCGTCCCGGA GGAGTACCCATGGGAGGTCGCCGTCCAGGCCGTGGTCGCGCTCGCCTGCGTCGTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGATTAATTACCACTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCAATTACTGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAAATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAATGGCTTGGCAAGGTTAATTTACCT                                                                                              ]
[+] EMBL AK104945             [                    TGTGGTGGTAGGAGAGGGAATCCATCCATGGTGATGGACGCAGCTAGAGCGGTGGCGATGCCGTCGCTGTCGCCGGCCACCGTCGCGGCGAGGCCGAGCAGCCGCCGCCTTCACAAGGTCGCCGCCATGGCCACCCAGAAGCCCACCTCCGGCACAAGAAGGGGGACGACGGTGTACTTCCCGGTGGGGGAGCCGGGGCCGAGGCAGACGACGAGCGGGAAGGCGGCGGCGC CGCCGGTG AAGCTGC TGACGAACGTGGAGAAGCTGCGGCTGC TGACGAAGGCGGAGAAGGCGGGGCTCCTGTCGGCGGCGGAGCGCGCCGGGCTGTCGCTGTCGGCGGTGGAGCGGCTGGGCCTGTTGTCCAAGGCGGAGGAGCTGGAGGTGCTGTCGGCGGCGACCGACCCGGGCACCCCCGGCGCGCTGC TC GGCGTCGCGCTGCTGCTGCTCGCCGCCGGCCCCGCC GTC GTCTACCTCGTCCCGGA GGAGTACCCATGGGAGGTCGCCGTCCAGGCCGTGGTCGCGCTCGCCTGCGTCGTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGTTCACTGCCTTAGCTTTGAGTGATTAATTACCACTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCAATTACTGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAAATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAATGGCTTGGCAAGGTTAATTTACCTAGCTGATGTTGATTAGGATGTGACGTGCATACGTATGAGTATGTATAAAACATGCTATATTTATAAATTTTT                      ]
[+] EMBL OSS13807A            [                       GGTGGTAGGAGAGGGAATCCATCCATGGTGATGGACGCAGCTAGAGCGGTGGCGATGCCGTCGCTGTCGCCGGCCACCGTCGCGGCGAGGCCGAGCAGNCGCCGCCTTCACAAGGTCGCCGCCATGGCCACCCAGAAGCCCACCTCCGGCACAANAAGGGGGACGACGGTGTACTTCCCGGTGGGGGAGCCGGGGCCGAGGCAGACGACGAGCGGGAAGNCGGCGGCGC CG GNTTGAAAGCTGC TGACGAACGTGGAGAAGCTGCGGCTGC TGACGAAGGCGGAGAAGGCGGGGCTCCTGTCGGCGGCGGA NGCGCGGGGCTGTCGCTGTCGGCGGTGGAGCGGCTGGGCCTGTTGTCCAAGGCGGAGGAGCTNGAGGTNCTGTCGGCGGCGACCGACCCGGGCAACCCCGGCGCGCTTCTTC GGCGTCGgg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL OSS14878A            [                                             CCATGGTGATGGACGCAGCTAGAGCGGTGGCGATGCCGTCGCTGTCGNCGGCCACCGTCGCGGCGAGGCCGAGCAGCCGCCGCCTTCACAAGGTCGCCGTCATGGCCACCCAGAAGCCCACCTCCGGCACAAGAAGGGGGACGACGGTGTACTTCCCGGTGGGGGAGCCGTGGCCGAGGCAGACGACGAGCGGGAAGGCGGCGGCGCGCG NNTTG AAGCTGCTTGACGAACGTGGAGAAGCTTCGGCTTCTTGACGAAGGCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU198235             [                                             CCATGGTGATGGACGCAGCTAGAGCGGTGGCGATGCCGTCGCTGTCGCCGGCCACCCTCGCGGCGAGGCCGAGCAGCCGCCGCCTTCACAAGGTCGCCGCCATGGCCACCCAGAAGCCCACCTCCGGCACAAGAAGGGGGACGACGGTGTACTTCCCGGTGGGGGAGCCGGGGCCGAGGCAGACGACGAGCGGGAAGGCGGCGGCGC CGCCGGTG AAGCTGC TGACGAACGTGGAGAAGCTGCGGCTGC TGACGAAGGCGGAGAAGGCGGGGCTCCTGTCGGCGGCGGAGCGCGCCGGGCTGTCGCTGTCGGCGGTGGAGCGGCTGGGCCTGTTGTCCAAGGCGGAGGAGCTGGAGGTGCTGTCGGCGGCGACCGACCCGGGCACCCCCGGCGCGCTGC TC GGCGTCGCGCTGCTGCTGCTCGCCGCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL OSS15866A            [                                               ATGGTGATGGACGCAGCTAGAGCGGTGGCGATGCCGTCGCTGTCGCCGGCCACCGTCGCGGCGAGGCCGAGCAGCCGCCGCCTTCACAAGGTCGCCGCCATGGNCACCCAGAAGCCCACCTCCGGCACAAGAAGGGGGACGACGGTGTACTTCCCGGTNGGGGAGCCGNGGCCGAGGCAGACGACGAGCGGAAAGNCGGCGNCGC CG CTTNA AAGCTNC TGACGAACGTGGAGAAGCTGCGGCTGC TGACGAAGGCGGAGAAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CB664899             [                                                                                                                                                                                                                                                                                                TGCGTCTGT TGACGAAGGCGGAGAAGGCGGGGCTCCTGTCGTCGGAGGAGCGCGCCGGGCTGTCGCTGTCGGCGGTGGAGCGGATGGGCCTGCTGTCCAAGTCGGAGGAGCTGGAGGTGATGTAGGGGGAGCCAGACCCGGGCACCCCCTGCGCGTTGC TC GGCGTCGAGCTGCTGTTGCTCCCCGCCGGCCCCGCT GTC GTCTACCTCGTCCCGGA GGAGTACCCATGGGAGGTCGCCGTCCAGGCCGTGGTCGCGCTCGCCTGCGTCGTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTAGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGATTAATTACCACTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCAATTACTGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAAATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAATGGTTTGGCAAGGCTAATTTTCCTACCTGATGAAGTTTACGA                                                                            ]
[+] EMBL AU075874             [                                                                                                                                                                                                                                                                                                                                                                                                      cCGAAGAAGCTGAAGGTNCTGTCGCCGGCGACCGACCCGGGCACCCCCGGCGCGCTGC TCGGGCGTCGCGCTGCTGCTGCTCGCCGCCGGCCCCGCC GTC GTCTACCTCGTCCCGGA GGAGTACCCATGGGAGGTCGCCGTCCAGGCCGTGGTCGCGCTCGCCTGCGTCGTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGATTAATTACCACTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCAATTACTGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAAATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAATGGCTTGGCAAGGTTAATTTACCTAGCTGATGTTGATTAGGATGTGACGTGCATACGTATGAGTATGTATAAAACATGCTATATTTATAAATTTTTTTCTCTAAAAAAAAAAAAAAAA]
[+] EMBL BI805331             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ctGCCTGTCGGTCTACCTCGTCCCGGATGGAGTACCCATGGGAGTTC CCGTCCA GCCGT GTCGCGCTCGCCTGCGTCGTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGATTAATTACCACTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCAATTACTGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAAATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAATGGCTTGGCAAGGTTAATTTACCTAGCTGATGTTGATTAGGATGTGACGTGCATACGTATGAGTATGTATAAAACATGCTATATTTATAAATTTTTTTCTCTACTTTAAAAAAAAAA ]




>consensus_15246#0
CCGCCCACGCNTCCGGTACGTGTGGTGGTAGGAGAGGGAATCCATCCATGGTGATGGACG
CAGCTAGAGCGGTGGCGATGCCGTCGCTGTCGCCGGCCACCGTCGCGGCGAGGCCGAGCA
GCCGCCGCCTTCACAAGGTCGCCGCCATGGCCACCCAGAAGCCCACCTCCGGCACAAGAA
GGGGGACGACGGTGTACTTCCCGGTGGGGGAGCCGGGGCCGAGGCAGACGACGAGCGGGA
AGGCGGCGGCGCCGCCGGTGAAGCTGCTGACGAACGTGGAGAAGCTGCGGCTGCTGACGA
AGGCGGAGAAGGCGGGGCTCCTGTCGGCGGCGGAGCGCGCCGGGCTGTCGCTGTCGGCGG
TGGAGCGGCTGGGCCTGTTGTCCAAGGCGGAGGAGCTGGAGGTGCTGTCGGCGGCGACCG
ACCCGGGCACCCCCGGCGCGCTGCTCGGCGTCGCGCTGCTGCTGCTCGCCGCCGGCCCCG
CCGTCGTCTACCTCGTCCCGGAGGAGTACCCATGGGAGGTCGCCGTCCAGGCCGTGGTCG
CGCTCGCCTGCGTCGTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGC
TCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGATTAAT
TACCACTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCAATTA
CTGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAAATTG
TATAAAACCTAGTATTATCTGATAATTGTATCTAAATGGCTTGGCAAGGTTAATTTACCT
AGCTGATGTTGATTAGGATGTGACGTGCATACGTATGAGTATGTATAAAACATGCTATAT
TTATAAATTTTTTTCTCTAAAAAAAAAAAAAAAA

consensusID : consensus_15246#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 519
fasta sequence

                              [ATTCGGCACGAGCGGCGGCNACCGACCGGGCANCCCCGGCGCGCTGCTCGGCGTCNCGCTGCTGCTGCTCGCCGCCGGCCCCGCCGTCGTCTACCTCGTCCCGGANGAGTACCCATGGGAGGTCGCCGTCCAAGCCGTGGTCNCGCTCGCCTGCGTCNTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGATTAATTATCACTTAATTTGCAATTAGTGTGTAATTAAGCAGANTATTTAGTGTGTATATCAATTACTGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAAATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAATGGCTTGGCAAGGTTAATTTACCTAACTGATGTTGATTAAGATNTGACNTGCATACGTATANTGAGTATGTATAAAACATGCNATATTTATAATTTNNNT]

[+] EMBL BE228317             [ATTCGGCACGAGCGGCGGCNACCGACCGGGCANCCCCGGCGCGCTGCTCGGCGTCNCGCTGCTGCTGCTCGCCGCCGGCCCCGCCGTCGTCTACCTCGTCCCGGANGAGTACCCATGGGAGGTCGCCGTCCAAGCCGTGGTCNCGCTCGCCTGCGTCNTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGATTAATTATCACTTAATTTGCAATTAGTGTGTAATTAAGCAGANTATTTAGTGTGTATATCAATTACTGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAAATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAATGGCTTGGCAAGGTTAATTTACCTAACTGATGTTGATTAAGATNTGACNTGCATACGTATANTGAGTATGTATAAAACATGCNATATTTATAATTTNNNT]




>consensus_15246#1
ATTCGGCACGAGCGGCGGCNACCGACCGGGCANCCCCGGCGCGCTGCTCGGCGTCNCGCT
GCTGCTGCTCGCCGCCGGCCCCGCCGTCGTCTACCTCGTCCCGGANGAGTACCCATGGGA
GGTCGCCGTCCAAGCCGTGGTCNCGCTCGCCTGCGTCNTCGGTGGCTCCACCGCCTTCGC
CGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCAC
TGCCTTAGCTTTGAGTGATTAATTATCACTTAATTTGCAATTAGTGTGTAATTAAGCAGA
NTATTTAGTGTGTATATCAATTACTGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAG
CATTGGTGTACCTGCAAAAATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAAT
GGCTTGGCAAGGTTAATTTACCTAACTGATGTTGATTAAGATNTGACNTGCATACGTATA
NTGAGTATGTATAAAACATGCNATATTTATAATTTNNNT

consensusID : consensus_15246#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 488
fasta sequence

                              [AGAAGCTGCGGCTGCTGACGAAGGCGGAGAAGGCGGGGCTCCTGTCGGCGGCGGAGCGCGCCGNGCTGTCGCTGTCGGCGGTGGAGCGGCTGGG-CCTGTTGT-CCAAGGCCGTGGTC-GCGCTCGCCTGCGTCGTCGGTGGCT-CCACCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGATTAATTACCACTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCAATTAC-TGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAAATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAATGGCTTGGCAAGGTTAATTTACCTAGCTGAT-GTTGATTAGGATGTGACGTGCATACGTATGAGTATGTATAAAACATGCTATATTTATAAAAAAA]

[+] EMBL OSC8741              [AGAAGCTGCGGCTGCTGACGAAGGCGGAGAAGGCGGGGCTCCTGTCGGCGGCGGAG GCGCNGNGCTGTCGCTGTCGGCGGTGGAGCGGCTGGG CCTGTTGT CCAAGGCCGTGGTC GCGCTCGCCTGCGTCGTCGGTGGCT CCACCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGATTAATTACCACTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCAATTACTTGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAAATTGTATAAAACCTAGTATTATCTGAT ATTGTATCTAAATGGTTTGGCAAGGTTAATTTACCTAGCTGATGGTTGATTAag                                                      ]
[+] EMBL AU083560             [ GAAGCTNCGGCTGCTGACGAAGGCGGAGAAGCCGGGGCTCCTGTCGGCGGCGGAGCGCGCCGGGCTGTCGCTGTCGNCGGTGGAGCGNCTGGGCCCTGTTGTCCCAAGGCCGTGGTCNCCGCTCCNCTGCGTCGTCGGTGGCTCCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGATTAATTACCACTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCAATTAC TGTGCCCCTACCCTACGCCTTGATTTTGTNCGAGAGCATTGGTGTACCTGCAAAAATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAATGGCTTGGCAAGGTTAATTTACCTAGCTGAT GTTGATTAGGATGTGACGTGCATACGTATGAGTATGTATAAAACATGCTATATTTATAAAAAAA]
[+] EMBL OSS15552A            [ GAAGCTGCGGCTGCTGACGAAGGCGGAGAAGGCGGGGCTCCTGTCGGCGGCGGA NGCGCCGNGCTGTCGCTGTCGGCGGTGGAGCGGCTGGG CCTGTTGT CCAAGGCCGTGGTC GCGCTCGCCTGCGTCGTCGGTGGCT CCACCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGATTAATTACCACTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCAATTAC TGTGCCCCTACCCTACGGCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAAATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAATGGCTTGGCAAGGTTAATTTACCTAGCTGAT GTTGATTAGGATGTTACGNGCATACGNATGAGTATGTATAAAACATGCTA              ]
[+] EMBL AU075886             [                                                                                                             GCCNTGGTC GCGCTCGCCTNCGTCGTCGGTGGCT CNACCG CTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGATTAATTACCACTTNATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCAATTAC TGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAAATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAATGGCTTGGCAAGGTTAATTTACCTAGCTGAT GTTGATTAGGATGTGACGTGCATACGTATGAGTATGTATAAAACATGCTATATTTATAAAAAAA]
[+] EMBL AU096737             [                                                                                                                                     CGTCGGTGGCT CCACCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGATTAATTACCACTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCAATTAC TGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAAATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAATGGCTTGGCAAGGTTAATTTAaaaaaaa                                                                    ]
[+] EMBL AU162077             [                                                                                                                                                caacCCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGATTAATTACCACTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCAATTAC TGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAAATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAATGGCTTGGCAAGGTTAATTTAaaaaaa                                                                     ]




>consensus_15246#2
AGAAGCTGCGGCTGCTGACGAAGGCGGAGAAGGCGGGGCTCCTGTCGGCGGCGGAGCGCG
CCGNGCTGTCGCTGTCGGCGGTGGAGCGGCTGGGCCTGTTGTCCAAGGCCGTGGTCGCGC
TCGCCTGCGTCGTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCC
AGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGATTAATTAC
CACTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCAATTACTG
TGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAAATTGTAT
AAAACCTAGTATTATCTGATAATTGTATCTAAATGGCTTGGCAAGGTTAATTTACCTAGC
TGATGTTGATTAGGATGTGACGTGCATACGTATGAGTATGTATAAAACATGCTATATTTA
TAAAAAAA

consensusID : consensus_15246#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 463
fasta sequence

                              [TGTACGTGTGGTGGTAGGAGAGGGAATCCATCCATGGTGATGGACGCAGCTAGAGCGGCGGCGCCGCCGGTGAAGCTGCTGACGAACGTGGAGAAGCTGCTCGCCGCCGGCCCCGCCGTCGTCTACCTCGTCCCGGAGGAGTACCCATGGGAGGTCGCCGTCCAGGCCGTGGTCGCGCTCGCCTGCGTCGTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGATTAATTACCACTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCAATTACTGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAAATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAAAAAAAAAAAAAA]

[+] EMBL AU163865             [TGTACGTGTGGTGGTAGGAGAGGGAATCCATCCATGGTGATGGACGCAGCTAGAGCGGCGGCGCCGCCGGTGAAGCTGCTGACGAACGTGGAGAAGCTGCTCGCCGCCGGCCCCGCCGTCGTCTACCTCGTCCCGGAGGAGTACCCATGGGAGGTCGCCGTCCAGGCCGTGGTCGCGCTCGCCTGCGTCGTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGATTAATTACCACTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCAATTACTGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAAATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAAAAAA        ]
[-] EMBL CF324822             [                                                                                                                                                                                                                                                                                                                                                                                                                      CAAAAATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAAAAAAAAAAAAAA]




>consensus_15246#3
TGTACGTGTGGTGGTAGGAGAGGGAATCCATCCATGGTGATGGACGCAGCTAGAGCGGCG
GCGCCGCCGGTGAAGCTGCTGACGAACGTGGAGAAGCTGCTCGCCGCCGGCCCCGCCGTC
GTCTACCTCGTCCCGGAGGAGTACCCATGGGAGGTCGCCGTCCAGGCCGTGGTCGCGCTC
GCCTGCGTCGTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAG
AGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGATTAATTACCA
CTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCAATTACTGTG
CCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAAATTGTATAA
AACCTAGTATTATCTGATAATTGTATCTAAAAAAAAAAAAAAA

consensusID : consensus_15246#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 253
fasta sequence

                              [GTGTACGTNTGGTGGTAGGAGAGGGAATCCATCCATGGTGATNGACGCAGCTAGAGCTGCNGCNCCGGTNNAGNGCTGCTGACGAACGTGGAGAAGCTGCTCGCCGCCGNCCCGCCTACGTCTACCTCGTCCCGGAGAGTACCCATNGGAGGTCGCCGTCCAGGCGTGGTCGCGCTCGCCTGCGTCGTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAA]

[+] EMBL OSC933               [GTGTACGTNTGGTGGTAGGAGAGGGAATCCATCCATGGTGATNGACGCAGCTAGAGCTGCNGCNCCGGTNNAGNGCTGCTGACGAACGTGGAGAAGCTGCTCGCCGCCGNCCCGCCTACGTCTACCTCGTCCCGGAGAGTACCCATNGGAGGTCGCCGTCCAGGCGTGGTCGCGCTCGCCTGCGTCGTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGCTCGTCCAGCTGAA]




>consensus_15246#4
GTGTACGTNTGGTGGTAGGAGAGGGAATCCATCCATGGTGATNGACGCAGCTAGAGCTGC
NGCNCCGGTNNAGNGCTGCTGACGAACGTGGAGAAGCTGCTCGCCGCCGNCCCGCCTACG
TCTACCTCGTCCCGGAGAGTACCCATNGGAGGTCGCCGTCCAGGCGTGGTCGCGCTCGCC
TGCGTCGTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCCAAGCTCCAGAGC
TCGTCCAGCTGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15246#0      CCGCCCACGCNTCCGGTACGTGTGGTGGTAGGAGAGGGAATCCATCCATGGTGATGGACG 60
consensus_15246#2      ------------------------------------------------------------
consensus_15246#1      ------------------------------------------------------------
consensus_15246#3      ------------------------------------------------------------
consensus_15246#4      ------------------------------------------------------------
                                                                                   

consensus_15246#0      CAGCTAGAGCGGTGGCGATGCCGTCGCTGTCGCCGGCCACCGTCGCGGCGAGGCCGAGCA 120
consensus_15246#2      ------------------------------------------------------------
consensus_15246#1      ------------------------------------------------------------
consensus_15246#3      ------------------------------------------------------------
consensus_15246#4      ------------------------------------------------------------
                                                                                   

consensus_15246#0      GCCGCCGCCTTCACAAGGTCGCCGCCATGGCCACCCAGAAGCCCACCTCCGGCACAAGAA 180
consensus_15246#2      ------------------------------------------------------------
consensus_15246#1      ------------------------------------------------------------
consensus_15246#3      ------------------------------------------------------------
consensus_15246#4      ------------------------------------------------------------
                                                                                   

consensus_15246#0      GGGGGACGACGGTGTACTTCCCGGTGGGGGAGCCGGGGCCGAGGCAGACGACGAGCGGGA 240
consensus_15246#2      ------------------------------------------------------------
consensus_15246#1      ------------------------------------------------------------
consensus_15246#3      ------------------------------------------------------------
consensus_15246#4      ------------------------------------------------------------
                                                                                   

consensus_15246#0      AGGCGGCGGCGCCGCCGGTGAAGCTGCTGACGAACGTGGAGAAGCTGCGGCTGCTGACGA 300
consensus_15246#2      ------------------------------------------------------------
consensus_15246#1      ------------------------------------------------------------
consensus_15246#3      ------------------------------------------------------------
consensus_15246#4      ------------------------------------------------------------
                                                                                   

consensus_15246#0      AGGCGGAGAAGGCGGGGCTCCTGTCGGCGGCGGAGCGCGCCGGGCTGTCGCTGTCGGCGG 360
consensus_15246#2      ------------------------------------------------------------
consensus_15246#1      ------------------------------------------------------------
consensus_15246#3      ------------------------------------------------------------
consensus_15246#4      ------------------------------------------------------------
                                                                                   

consensus_15246#0      TGGAGCGGCTGGGCCTGTTGTCCAAGGCGGAGGAGCTGGAGGTGCTGTCGGCGGCGACCG 420
consensus_15246#2      ------------------------------AGAAGCTGCGGCTGCTGACGAAGGCGGAGA 30
consensus_15246#1      -----------------------------------ATTCGGC-ACGAGCGGCGGCNACCG 24
consensus_15246#3      --------TGTACGTGTGGTGGTAGGAGAGGGAATCCATCCATGGTGATGGACGCAGCTA 52
consensus_15246#4      -------GTGTACGTNTGGTGGTAGGAGAGGGAATCCATCCATGGTGATNGACGCAGCTA 53
                                                                            **     

consensus_15246#0      ACCCGGGCACCCCCGGCG---CGCTGCTCGGCGTCGCGCTGCTGCTGCTCGCCGCCGGCC 477
consensus_15246#2      AGGCGGG-GCTCCTGTCG----GCGGCGGAGCG-CGCCGNGCTG----TCGCTGTCGGC- 79
consensus_15246#1      AC-CGGGCANCCCCGGCG---CGCTGCTCGGCGTCNCGCTGCTGCTGCTCGCCGCCGGCC 80
consensus_15246#3      GAGCGGCGGCGCCGCCGGTGAAGCTGCTGACGAACGTGGAGAAGCTGCTCGCCGCCGGCC 112
consensus_15246#4      GAGCTGCNGCNCCGGTNN-AGNGCTGCTGACGAACGTGGAGAAGCTGCTCGCCGCCGNCC 112
                          * *     **         ** **       *     *  *    **** * ** * 

consensus_15246#0      CCGCCGTCGTCTACCTCGTCCCGGAGGAGTACCCATGGGAGGTCGCCGTCCA-GGCCGTG 536
consensus_15246#2      ----------------------GGTGGAGCGGCT----GGGCCTGTTGTCCAAGGCCGTG 113
consensus_15246#1      CCGCCGTCGTCTACCTCGTCCCGGANGAGTACCCATGGGAGGTCGCCGTCCA-AGCCGTG 139
consensus_15246#3      CCGCCGTCGTCTACCTCGTCCCGGAGGAGTACCCATGGGAGGTCGCCGTCCA-GGCCGTG 171
consensus_15246#4      C-GCCTACGTCTACCTCGTCCCGGAG-AGTACCCATNGGAGGTCGCCGTCCA-GGC-GTG 168
                                             **   **   *     * *   *  *****  ** ***

consensus_15246#0      GTCGCGCTCGCCTGCGTCGTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCC 596
consensus_15246#2      GTCGCGCTCGCCTGCGTCGTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCC 173
consensus_15246#1      GTCNCGCTCGCCTGCGTCNTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCC 199
consensus_15246#3      GTCGCGCTCGCCTGCGTCGTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCC 231
consensus_15246#4      GTCGCGCTCGCCTGCGTCGTCGGTGGCTCCACCGCCTTCGCCGCCTCCAGCTTCGTGTCC 228
                       *** ************** *****************************************

consensus_15246#0      AAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGAT 656
consensus_15246#2      AAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGAT 233
consensus_15246#1      AAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGAT 259
consensus_15246#3      AAGCTCCAGAGCTCGTCCAGCTGAAGCGATTACATGCTCACTGCCTTAGCTTTGAGTGAT 291
consensus_15246#4      AAGCTCCAGAGCTCGTCCAGCTGAA----------------------------------- 253
                       *************************                                   

consensus_15246#0      TAATTACCACTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCA 716
consensus_15246#2      TAATTACCACTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCA 293
consensus_15246#1      TAATTATCACTTAATTTGCAATTAGTGTGTAATTAAGCAGANTATTTAGTGTGTATATCA 319
consensus_15246#3      TAATTACCACTTAATTTGCAATTAGTGTGTAATTAAGCAGAGTATTTAGTGTGTATATCA 351
consensus_15246#4      ------------------------------------------------------------
                                                                                   

consensus_15246#0      ATTACTGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAA 776
consensus_15246#2      ATTACTGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAA 353
consensus_15246#1      ATTACTGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAA 379
consensus_15246#3      ATTACTGTGCCCCTACCCTACGCCTTGATTTTGTACGAGAGCATTGGTGTACCTGCAAAA 411
consensus_15246#4      ------------------------------------------------------------
                                                                                   

consensus_15246#0      ATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAATGGCTTGGCAAGGTTAATTT 836
consensus_15246#2      ATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAATGGCTTGGCAAGGTTAATTT 413
consensus_15246#1      ATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAATGGCTTGGCAAGGTTAATTT 439
consensus_15246#3      ATTGTATAAAACCTAGTATTATCTGATAATTGTATCTAAAAAAAAAAAAAAA-------- 463
consensus_15246#4      ------------------------------------------------------------
                                                                                   

consensus_15246#0      ACCTAGCTGATGTTGATTAGGATGTGACGTGCATACGTAT---GAGTATGTATAAAACAT 893
consensus_15246#2      ACCTAGCTGATGTTGATTAGGATGTGACGTGCATACGTAT---GAGTATGTATAAAACAT 470
consensus_15246#1      ACCTAACTGATGTTGATTAAGATNTGACNTGCATACGTATANTGAGTATGTATAAAACAT 499
consensus_15246#3      ------------------------------------------------------------
consensus_15246#4      ------------------------------------------------------------
                                                                                   

consensus_15246#0      GCTATATTTATAAATTTTTTTCTCTAAAAAAAAAAAAAAAA 934
consensus_15246#2      GCTATATTTATAAAAAAA----------------------- 488
consensus_15246#1      GCNATATTTATAATTTNNNT--------------------- 519
consensus_15246#3      -----------------------------------------
consensus_15246#4      -----------------------------------------