|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15263#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1466 fasta sequence
[TTTTTTTTTGTTTGGAAAACAGGCATTTGAAGCCTCTTGCAGCACCAATGACCAATGCATCACATTTATTTCATCAGCTACACAACACAGGATAACATGATACCAACACCAACATCAAACACAGTGACAAACCACACAACTACCCAACGCTCAGAAGGGAAGCACGCGGACACCTGCATGACGGAGGTCGACAAGGTCGCTCGCCGGTTCAGGAATTATTAAGCCAGCGGCGGAGTGAAGAAGTAGATGTCGCCGAGGCGATCGTTCGTCGGCGAGTTGCCGCCGTACACCAGCAGCCCTCGCCGGCCGTCCACCTCCCCCGCCGAGAACGCGCACCATCCCCTCGGCCCCGGGTGGTGCTCGCCCGCGTCGTCCAGCCTCGCCCACGCGCCCGTCTCCGTGTCCAGCGCGAACGCCTCGGCGGAGAATTTGCCGGCGCCGAGGTGCCCCAGGTCGCTCGGGTCCACCTCGCCGNCGAACACCACCACGTGCTTCCCGATCCCCGCGGCACAGAACACGCTGCGCGGGGACGGCTTGTCGCCGCCGCCGCCGCCGCCGGTGGTCTCGACCGTGGACCACGCGCCCGTGCCCGGGTCGTAGCAGTGCACGTCGTCCAGCTTCTTCGCCGGAGAAGCCCGT-CACCACCCACACCTTCCCGCCGGCGACGGCCAGCCCGGGGCCTCCCCGCGGCTTGCACGCCTCGCCCGGCGACGGCAGCGCCTCCCACCGCCCGGCGGCGACGTCGTAGGCCCACAGGTCGTTGAGGCGGCCGGCGTCGCCGCACCCGCCGAACACGTACACCTTCCCGCCCCCCGCGGCGTCGGCCACCATGGAGTGGTAGCTCCGGTGCGGCGGGCCGTCGCCGGCGCCGGAGGACAGCAGCGTCCATCTGTTGGTCGCCGTGTCAAACGAGTAGAGCTCGTTCAGCTCCTTGTGCTCCTGGTCGCGACCGCCGAACATGTAGACGGTGGCGCCGACGGACGCCATGGTGACGCCGACGCGCGGCGGCGGCACGTCGCCGGAGGCGTCCAGCGCCGACCAGCACTGCGACTTGAGGTCGAAGGCGTACATGGCGTTGTCCACCGGCACGCGCGGCGTGAACTCGCCGCCGAACGCGTACGCCGTGCCGCCGACGAGGGTGATGGCGTGGGAGCTTCTTGCTCCCGGCCCATCTCCCTTCTGCTCTAGCTGCGCGTGATTAATTAATTAATTAACTGATGTCAATTACTAATCAAATTAGACAAAACTGGATGCTGCAATCTGCAAAGAAAATTACTACTCTCTCGCTGAGCAATTTGTGTTCGAAGATTATTAGTATTTGCTATGAAATTCTTGCGTTCTATACAGGATTGTAATTTCTATAAAATTTCCAGGAATTCACTAATTAGTTTAAGTGACATCTAATATGTGGATGTCTATATGTGGCGGCGCTTTTTATTTGCATATGTTCATGAGCCTAATGGCCC]
[-] EMBL AU184171 [TTTTTTTTTGTTTGGAAAACAGGCATTTGAAGCCTCTTGCAGCACCAATGACCAATGCATCACATTTATTTCATCAGCTACACAACACAGGATAACATGATACCAACACCAACATCAAACACAGTGACAAACCACACAACTACCCAACGCTCAGAAGGGAAGCACGCGGACACCTGCATGACGGAGGTCGACAAGGTCGCTCGCCGGTTCAGGAATTATTAAGCCAGCGGCGGAGTGAAGAAGTAGATGTCGCCGAGGCGATCGTTCGTCGGCGAGTTGCCGCCGTACACCAGCAGCCCTCGCCGGCCGTCCACCTCCCCCGCCGAGAACGCGCACCATCCCCTCGGCCCCGGGTGGTGCTCGCCCGCGTCGTCCAGCCTCGCCCACGCGCCCGTCTCCGTGTCCAGCGCGAACGCCTCGGCGGAGA ]
[-] EMBL AU184431 [TTTTTTTTTGTTTGGAAAACAGGCATTTGAAGCCTCTTGCAGCACCAATGACCAATGCATCACATTTATTTCATCAGCTACACAACACAGGATAACATGATACCAACACCAACATCAAACACAGTGACAAACCACACAACTACCCAACGCTCAGAAGGGAAGCACGCGGACACCTGCATGACGGAGGTCGACAAGGTCGCTCGCCGGTTCAGGAATTATTAAGCCAGCGGCGGAGTGAAGAAGTAGATGTCGCCGAGGCGATCGTTCGTCGGCGAGTTGCCGCCGTACACCAGCAGCCCTCGCCGGCCGTNCACCTTCCCCGCCGAGAACGCGCACCATCCCCTCGGCCCCGGGTGGTGCT ]
[-] EMBL OSR05021A [ GCATTTGAAGCCTCTTGCAGCAACAATGACCAATGCATCACATTTATTTCATCAGCTACACAACACAGGATAACATGATACCAACACCAACATCAAACACAGTGACAAACCACACAACTACCCAACGCTCAGAAGGGAAGCACGCGGACACCTGCATGACGGAGGTCGACAAGGTCGCTCGCCGGTTCAGGAATTATTAAGCCAGCGGCGGAGTGA ]
[-] EMBL OSR00751A [ GCATTTGAAGCCTCTTGCAGCAACAATGACCAATGCATCACATTTATTTCATCAGCTACACAACACAGGATAACATGATACCAACACCAACATCAAACACAGTGACAAACCACACAACTACCCAACGCTCAGAAGGGAAGCACGCGGACACCTGCATGACGGAGGTCGANAAGGTCGCTCGCCGGTTCAGGAATTATTAAGCCAGCGGCGGAGTGA ]
[+] EMBL CB648693 [ ATGACCAATGCATCACATTTATCTTATCAGCTACACAACACAGGATAACATGATACCAACACCAACATCAAACACAGTGACAAACCACACAACTACCCAACGCTCAGAAGGGAAGCACGCGGACACCTGCATGACGGAGGTCGACAAGGTCGCTCGCCGGTTCAGGAATTATTAAGCCAGCGGCGGAGTGAAGAAGTAGATGTCGCCGAGGCGATCGTTCGTCGGCGAGTTGCCGCCGTACACCAGCAGCCCTCGCCGGCCGTCCACCTCCCCCGCCGAGAACGCGCATCATCCCC ]
[-] EMBL AU101621 [ tttttTGACCAATGCATCACATTTATTTCATCAGCTACACAACACAGGATAACATGATACCAACACCAACATCAAACACAGTGACAAACCACACAACTACCCAACGCTCAGAAGGGAAGCACGCGGACACCTGCATGACGGAGGTCGACAAGGTCGCTCGCCGGTTCAGGAATTATTAAGCCAGCGGCGGAGTGAAGAAGTAGATGTCGCCGAGGCGATCGTTCGTCGGCGAGTTGCCGCCGTACACCAGCAGCCCTCGCCGGCCGTCCACCTCCCCCGCCGAGAACGCGCACCATCCCCTCGGCCCCGGGTGGTGCTCGCCCGCGTCGTCCAGCCTCGCCCACGCGCCCGTCTCCGTGTCCAGCGCGAACGCCTCGGCGGAGAATTTGCCGGCGCCGAGGTGCCCCAGGTCGCTCGGGTCCACCTCGCCGNCGAACACCACCACGTGCTTCCCGATCCCCGCGGCACAGAACACGCTGCGCGGGGACGGCTTGTCGCCGCCGCCGCCGCCGCCGGTGGTCTCGACCGTGGACCACGCGCCCGTGCCCGGGTCGTAGCAGTGCACGTCGTCCAGCTTCTTCGCCGGAGAAGCCCGT CACCACCCAC ]
[+] EMBL AK109884 [ ACCAACATCAAACACAGTGACAAACCACACAACTACCCAACGCTCAGAAGGGAAGCACGCGGACACCTGCATGACGGAGGTCGACAAGGTCGCTCGCCGGTTCAGGA ATTAAGCCAGCGGCGGAGTGAAGAAGTAGATGTCGCCGAGGCGATCGTTCGTCGGCGAGTTGCCGCCGTACACCAGCAGCCCTCGCCGGCCGTCCACCTCCCCCGCCGAGAACGCGCACCATCCCCTCGGCCCCGGGTGGTGCTCGCCCGCGTCGTCCAGCCTCGCCCACGCGCCCGTCTCCGTGTCCAGCGCGAACGCCTCGGCGGAGAATTTGCCGGCGCCGAGGTGCCCCAGGTCGCTCGGGTCCACCTCGCCGCCGAACACCACCACGTGCTTCCCGATCCCCGCGGCACAGAACACGCTGCGCGGGGACGGCTTGTCGCCGCCGCCGCCGCCGCCGGTGGTCTCGACCGTGGACCACGCGCCCGTGCCCGGGTCGTAGCAGTGCACGTCGTCCAGC TCCTCGCCGGAGAAG CCGTACACCACCCACACCTTCCCGCCGGCGACGGCCAGCCCGGGGCCTCCCCGCGGCTTGCACGCCTCGCCCGGCGACGGCAGCGCCTCCCACCGCCCGGCGGCGACGTCGTAGGCCCACAGGTCGTTGAGGCGGCCGGCGTCGCCGCACCCGCCGAACACGTACACCTTCCCGCCCCCCGCGGCGTCGGCCACCATGGAGTGGTAGCTCCGGTGCGGCGGGCCGTCGCCGGCGCCGGAGGACAGCAGCGTCCATCTGTTGGTCGCCGTGTCAAACGAGTAGAGCTCGTTCAGCTCCTTGTGCTCCTGGTCGCGACCGCCGAACATGTAGACGGTGGCGCCGACGGACGCCATGGTGACGCCGACGCGCGGCGGCGGCACGTCGCCGGAGGCGTCCAGCGCCGACCAGCACTGCGACTTGAGGTCGAAGGCGTACATGGCGTTGTCCACCGGCACGCGCGGCGTGAACTCGCCGCCGAACGCGTACGCCGTGCCGCCGACGAGGGTGATGGCGTGGGAGCTTCTTGCTCCCGGCCCATCTCCCTTCTGCTCTAGCTGCGCGTGATTAATTAATTAATTAACTGATGTCAATTACTAATCAAATTAGACAAAACTGGATGCTGCAATCTGCAAAGAAAATTACTACTCTCTCGCTGAGCAATTTGTGTTCGAAGATTATTAGTATTTGCTATGAAATTCTTGCGTTCTATACAGGATTGTAATTTCTATAAAATTTCCAGGAATTCACTAATTAGTTTAAGTGACATCTAATATGTGGATGTCTATATGTGGCGGCGCTTTTTATTTGCATATGTTCATGAGCCTAATGGCCC]
consensusID : consensus_15263#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1259 fasta sequence
[TTTTTTTTTGACCAATGCATCACATTTATTTCATCAGCTACACAACACAGGATAACATGATACCAACACCAACATCAAACACAGTGACAAACCACACAACTACCCAACGCTCAGAAGGGAAGCACGCGGACACCTGCATGACGGAGGTCGACAAGGTCGCTCGCCGGTTCAGGAATTATTAAGCCAGCGGCGGAGTGAAGAAGTAGATGTCGCCGAGGCGATCGTTCGTCGGCGAGTTGCCGCCGTACACCAGCAGCCCTCGCCGGCCGTCCACCTCCCCCGCCGAGAACGCGCACCATCCCCTCGGCCCCGGGTGGTGCTCGCCCGCGTCGTCCAGCCTCGCCCACGCGCCCGTCTCCGTGTCCAGCGCGAACGCCTCGGCGGAGAATTTGCCGGCGCCGAGGTGCCCCAGGTCGCTCGGGTCCACCTCGCCGTCGAACACCACCACGTGCTTCCCGATCCCCGNGGCACAGAACACGCTGCGCGGGGACGGCTTGTCG-CCGCCGCCGCCGCCGCCGGTGGTCTCGACCGTGGACCACGCGCCCGTGCCCGGGTCGTAGCAGTGCACGTCGTCCAGCTCCTCGCCGGAGAAGCCGTACACCACCCACACCTTCCCGCCGGCGACGGCCAGCCCGGGGCCTCCCCGCGGCTTGCACGCCTCGCCCGGCGACGGCAGCGCCTCCCACCGCCCGGCGGCGACGTCGTAGGCCCACAGGTCGTTGAGGCGGCCGGCGTCGCCGCACCCGCCGAACACGTACACCTTCCCGCCCCCCGCGGCGTCGGCCACCATGGAGTGGTAGCTCCGGTGCGGCGGGCCGTCGCCGGCGCCGGAGGACAGCAGCGTCCATCTGTTGGTCGCCGTGTCAAACGAGTAGAGCTCGTTC-AGCTCCTTGTGCTCCTGGTCGCGACCGCCGAACATGT-AGACGGTGGCGCCGACGGACGCCATGGTG-ACGCCGACGCGCGGCGGCGGCACG-T-C-CCGGAGGCGTCCAGCGCCGACCAGCACTGCGACTTGAGGTCGAAGGCGTACATGGCGTTGTCCACC-GGCACGCGCGGCGTGAACTCGCCGCCGAANGCGTACGCCGTGCCGCCGACGAGGGTGATGGCGTGGGAGCTTCTTGCTCCCGGCCCATCTCCCTTCTGCTCTAGCTTCACCCAGGTGCCAGCAGCCATTGGCATGAACAGATTGGAGCTCTGCTTCCTCTGCAGCCTGAGAACTTGCCTTTCTCCACCAATCTGGCCAGAGGCCAAGTGATATACAA]
[-] EMBL AU184587 [TTTTTTTTTGACCAATGCATCACATTTATTTCATCAGCTACACAACACAGGATAACATGATACCAACACCAACATCAAACACAGTGACAAACCACACAACTACCCAACGCTCAGAAGGGAAGCACGCGGACACCTGCATGACGGAGGTCGACAAGGTCGCTCGCCGGTTCAGGAATTATTAAGCCAGCGGCGGAGTGAAGAAGTAGATGTCGCCGAGGCGATCGTTCGTCGGCGAGTTGCCGCCGTACACCAGCAGCCCTCGCCGGCCGTCCACCTCCCCCGCCGAGAACGCGCACCATCCCCTCGGCCCCGGGTGGTGCTCGCCCGCGTCGTCCAGCCTCGCCCACGCGCCCGTCTCCGTGTCCAGCGCGAACGCCTCGGCGGAGAATTT ]
[-] EMBL AU095429 [ TTTTTNACCAATGCATCACATTTATTTCATCAGCTACACAACACAGGATAACATGATACCAACACCAACATCAAACACAGTGACAAACCACACAACTACCCAACGCTCAGAAGGGAAGCACGCGGACACCTGCATGACGGAGGTCGACAAGGTCGCTCGCCGGTTCAGGAATTATTAAGCCAGCGGCGGAGTGAAGAAGTAGATGTCGCCGAGGCGATCGTTCGTCGGCGAGTTGCCGCCGTACACCAGCAGCCCTCGCCGGCCGTCCACCTCCCCCGCCGAGAACGCGCACCATCCCCTCGGCCCCGGGTGGTGCTCGCCCGCGTCGTCCAGCCTCGCCCACGCGCCCGTCTCCGTGTCCAGCGCGAACGCCTCGGCGGAGAATTTGCCGGCGCCGAGGTGCCCCAGGTCGCTCGGGTCCACCTCGCCGTCGAACACCACCACGTGCTTCCCGATCCCCGNGGCACAGAACACGCTGCGCGGGGACGGCTTGTCGCCCGNCGCCGCCGTCGCCGGTGGTCTCGACCGTGGACCACGCGCCCGTGCCCGGGTCGTAGCANTGCACGTTGTTCAGCTCCTCGCCGGAGAA CCGTACA ]
[-] EMBL AK072805 [ TGACCAATGCATCACATTTATTTCATCAGCTACACAACACAGGATAACATGATACCAACACCAACATCAAACACAGTGACAAACCACACAACTACCCAACGCTCAGAAGGGAAGCACGCGGACACCTGCATGACGGAGGTCGACAAGGTCGCTCGCCGGTTCAGGAATTATTAAGCCAGCGGCGGAGTGAAGAAGTAGATGTCGCCGAGGCGATCGTTCGTCGGCGAGTTGCCGCCGTACACCAGCAGCCCTCGCCGGCCGTCCACCTCCCCCGCCGAGAACGCGCACCATCCCCTCGGCCCCGGGTGGTGCTCGCCCGCGTCGTCCAGCCTCGCCCACGCGCCCGTCTCCGTGTCCAGCGCGAACGCCTCGGCGGAGAATTTGCCGGCGCCGAGGTGCCCCAGGTCGCTCGGGTCCACCTCGCCGCCGAACACCACCACGTGCTTCCCGATCCCCGCGGCACAGAACACGCTGCGCGGGGACGGCTTGTCG CCGCCGCCGCCGCCGCCGGTGGTCTCGACCGTGGACCACGCGCCCGTGCCCGGGTCGTAGCAGTGCACGTCGTCCAGCTCCTCGCCGGAGAAGCCGTACACCACCCACACCTTCCCGCCGGCGACGGCCAGCCCGGGGCCTCCCCGCGGCTTGCACGCCTCGCCCGGCGACGGCAGCGCCTCCCACCGCCCGGCGGCGACGTCGTAGGCCCACAGGTCGTTGAGGCGGCCGGCGTCGCCGCACCCGCCGAACACGTACACCTTCCCGCCCCCCGCGGCGTCGGCCACCATGGAGTGGTAGCTCCGGTGCGGCGGGCCGTCGCCGGCGCCGGAGGACAGCAGCGTCCATCTGTTGGTCGCCGTGTCAAACGAGTAGAGCTCGTTC AGCTCCTTGTGCTCCTGGTCGCGACCGCCGAACATGT AGACGGTGGCGCCGACGGACGCCATGGTG ACGCCGACGCGCGGCGGCGGCACG T CGCCGGAGGCGTCCAGCGCCGACCAGCACTGCGACTTGAGGTCGAAGGCGTACATGGCGTTGTCCACC GGCACGCGCGGCGTGAACTCGCCGCCGAACGCGTACGCCGTGCCGCCGACGAGGGTGATGGCGTGGGAGCTTCTTGCTCCCGGCCCATCTCCCTTCTGCTCTAGCTTCACCCAGGTGCCAGCAGCCATTGGCATGAACAGATTGGAGCTCTGCTTCCTCTGCAGCCTGAGAACTTGCCTTTCTCCACCAATCTGGCCAGAGGCCAAGTGATATACAA]
[-] EMBL CA766941 [ AATGCATCACATTTATTTCATCAGCTACACAACACAGGATAACATGATACCAACACCAACATCAAACACAGTGACAAACCACACAACTACCCAACGCTCAGAAGGGAAGCACGCGGACACCTGCATGACGGAGGTCGACAAGGTCGCTCGCCGGTTCAGGAATTATTAAGCCAGCGGCGGAGTGAAGAAGTAGATGTCGCCGAGGCGATCGTTCGTTGGCGAGTTGCCGCCGTACACCAGCAGCCCTCGCCGGCCG ]
[-] EMBL CB648665 [ GGACGGCTTGTCG CCGCCGCCGCCGCCGCCGGTGGTCTCGACCGTGGACCACGCGCCCGTGCCCGGGTCGTAGCAGTGCACGTCGTCCAGCTCCTCGCCGGAGAAGCCGTACACCACCCACACCTTCCCGCCGGCGACGGCCAGCCCGGGGCCTCCCCGCGGCTTGCACGCCTCGCCCGGCGACGGCAGCGCCTCCCACCGCCCGGCGGCGACGTCGTAGGCCCACAGGTCGTTGAGGCGGCCGGCGTCGCCGCACCCGCCGAACACGTACACCTTCCCGCCCCCCGCGGCGTCGGCCACCATGGAGTGGTAGCTCCGGTGCGGCGGGCCGTCGCCGGCGCCGGAGGACAGCAGCGTCCATCTGTTGGTCGCCGTGTCAAACGAGTAGAGCTCGTTC AGCTCCTTGTGCTCCTGGTCGCGACCGCCGAACATGT AGACGGTGGCGCCGACGGACGCCATGGTG ACGCCGACGCGCGGCGGCGGCACG T CGCCGGAGGCGTCCAGCGCCGACCAGCACTGCGACTTGAGGTCGAAGGCGTACATGGCGTTGTCCACC GGCACGCGCGGCGTGAACTCGCCGCCGAACGCGTACGCCGTGCCGCCGACGAGGGTGATGGCGTGGGAGCTTCTTGCTCCCGGCCCATCTCCCTTCTGCTCTAGCTTCACCCAGGTGCCAGCAGCCATTGGCATGAACAGATTGGAGCTCTGCTTCCTGTGCAGCC ]
[-] EMBL OSR05841A [ GGCTTGTCG CCGCCGCCGCCGCCNCCGGTGGTNTCGACCGTGGACCANGCGCCCGTGCCCGGGTNGTAGCAGTGCACGTCGTCCAGCTCCTCGCCGGAGAAGCCGTACACCACCCANACCTTCCCGCCGGCGACGGCCAGCCCGGGGCCTCCCCGCGGCTTGCACGCCTCGCCCGGCGACGGCAGCGCCTCCCACCGCCCGGCG ]
[-] EMBL OSR3054A [ CATCTGTTGGTCGCCGTGTCAAACNAGTAGAGCTCGTTC AGCTCCTTGTGCTCCTGGTCGCGACCGCCGAACATGT AGACGGTGGCGCCNACGGACGCCATGGTGAACACCNACNCGCGGCGGCGGCACGTT C NCGGAGNCGTCCAGCGCCGACCAGCACTGCGACTTGAGGTCGAAGGCGTACATGGCGTTGTCCACC GNTACGCGCGGCGTGAACTCGCCGCCGAACGCGTACGCCGTGCCGCCGACGAGGGTGATGGCGTGGGAGCTTCTTGCTCCCGGCCCATCTCCCTTCTGCTCTAGCTTCACCCAGGTGCCAGCAGCCATTGGCATGAACAGATTG ]
[-] EMBL OSR27901A [ ATCTGTTGGTCGCCGTGTCAAACGAGTAGAGCTCGTTC AGCTCCTTGTGCTCCTGGTCGCGACCGCCGAACATGT AGACGGTGGCGCCGACGGACGCCATGGTG ANGCCGACGCGCGGCGGCGGCACG T C CCGGAGGCGTCCAGCGCCGACCAGCACTGCGACTTGAGGTCGAAGGCGTACATGGCGTTGTCCACCGGGCACGCGCGGCGTGAACTCGCCGCCGAANGCGTACGCCGTGCCNCCGACGAGGGTGATGGCGTGGGAGCTTCTTGCTCCCGGCCCATCTCCCTTCTGCTCTAGCTTCACCCAGGTGCCAGCAGCCATTGGCATGAACAGATTGG ]
[-] EMBL OSS2858A [ AGAGCTCGTTCAAGCTCCTTGTGCTCCTGGTCGCGACCGCCGAACATGT AGACGGTGGCGCCGACGGACGCCATGGTG ACGCCGACGCGCGGCGGCGGCACG TCC CCGGAGGCGTCCAGCGCCGACCAGCACTGCGACTTGAGGTCGAAGGCGTACATGGCGTTGTCCACC GGCACGCGCGGCGTGAACTCGCCGCCGAANGCGTACGCCGTGCCGCCGACGAGGGTGATGGCGTGGGAGCTTCTTGCTCCCGGCCCATCTCCCTTCTGCTCTAGCTTCACCCAGGTGCCAGCAGCCATTGGCATGAACAGATTGGAGCTCTGCTTCCTCTGCAGCCTGAG ]
[-] EMBL OSS2857A [ TTCAAGCTCCTTGTGCTCCTGGTCGCGACCGCCGAACATGTAAGACGGTGGCGCCGACGGACGCCATGGTG ACGCCGACGCGCGGCGGCGGCACG T C CCGGAGGCGTCCAGCGCCGACCAGCACTGCGACTTGAGGTCGAAGGCGTACATGGCGTTGTCCACC GGCACGCGCGGCGTGAACTCGCCGCCGAANGCGTACGCCGTGCCGCCGACGAGGGTGATGGCGTGGGAGCTTCTTGCTCCCGGCCCATCTCCCTTCTGCTCTAGCTTCACCCAGGTGCCAGCAGCCATTGGCATGAACAGATTGGAGCTCTGCTTCCTCTGCAGCCTGAG ]
[-] EMBL OSR22961A [ ACG T C CCGGAGGCGTCCAGCGCCGACCAGCACTGCGACTTGAGGTNGAANGCGTACATGGCGTTGTCCACC GGCANGCGCGGCGTGAACTCGCCGCCGAAAGCGTACGCCGTGCCGCCGACGAGGGTGATGGCGTGGGAGCTTCTTGCTCCCGGCCCATCTCCCTTCTGCTCTAGCTTCACCCAGGTGCCAGCAGCCATTGGCATGAACAGATTGGAGCTCTGCTTCCTCTGC ]
[-] EMBL OSR14652A [ CGTCCAGCGCCGACCAGCACTGCNACTTGAGGTNGAANGCGTACATGGCGTTGTCCACCNGGNACGCGCGGCGTGAACTCGCCGCCGAANGCGTACGCCGTGCCNCCGACGAGGGTGATAGNGTGGGAGCNTCTTGCTCCCGGCCCATCTCCCNTCTGCTCTAGCTTCACCCAGGTGCCAGCAGCCATTGGCATGAACAGATTGGAGCTCTGCTTCCTCTGC ]
consensusID : consensus_15263#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 389 fasta sequence
[TTTTTTTTTTTTTGACCAATGCATCACATTTATTTCATCAGCTACACAACACAGGATAACATGATACCAACACCAACATCAAACACAGTGACAAACCACACAACTACCCAACGCTCAAAAGGGAAGCACGCGGACACCTGCATGACGGAGGTCGACAAGGTCGCTCGCCGGTTCAGGAATTATTAAGCCAGCGGCGGAGTGAAAAAGTAAATGTCGCCAAGGCGATCGTTCGTTGGCGAGTTGCCGCCGTACACCAGCAGCCCTCGCCGGCCGTCCACCTCCCCCTTGTCTCGTCCTCTGGCCACCTAGAGCCACAAAAGCAGGATGCCCAGCACTCCAGGCAGACGTGTCAATGTGACAGACGGCGACACCGCTGTTGATCTTCCCCT]
[+] EMBL CA759886 [TTTTTTTTTTTTTGACCAATGCATCACATTTATTTCATCAGCTACACAACACAGGATAACATGATACCAACACCAACATCAAACACAGTGACAAACCACACAACTACCCAACGCTCAAAAGGGAAGCACGCGGACACCTGCATGACGGAGGTCGACAAGGTCGCTCGCCGGTTCAGGAATTATTAAGCCAGCGGCGGAGTGAAAAAGTAAATGTCGCCAAGGCGATCGTTCGTTGGCGAGTTGCCGCCGTACACCAGCAGCCCTCGCCGGCCGTCCACCTCCCCCTTGTCTCGTCCTCTGGCCACCTAGAGCCACAAAAGCAGGATGCCCAGCACTCCAGGCAGACGTGTCAATGTGACAGACGGCGACACCGCTGTTGATCTTCCCCT]
consensusID : consensus_15263#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 129 fasta sequence
[TGGTTTTTCTCTGTGTTTGATGTTGGTGTTGGTATCATGTTNTCCTGTGTTGTGTAGCTGATGAAATAAATGTGATGCATTGGTCATTGGTGCTTNAANATAAAATNAATGGAGNANAAAAAANAANAN]
[+] EMBL AU097214 [TGGTTTTTCTCTGTGTTTGATGTTGGTGTTGGTATCATGTTNTCCTGTGTTGTGTAGCTGATGAAATAAATGTGATGCATTGGTCATTGGTGCTTNAANATAAAATNAATGGAGNANAAAAAANAANAN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15263#0 TTTTTTTTTGTTTGGAAAACAGGCATTTGAAGCCTCTTGCAGCACCAATGACCAATGCAT 60
consensus_15263#1 ----------------------------------------TTTTTTTTTGACCAATGCAT 20
consensus_15263#2 ------------------------------------TTTTTTTTTTTTTGACCAATGCAT 24
consensus_15263#3 -----------------------------------TGGTTTTTCTCTGTGTTTGATGT-T 24
** *** *
consensus_15263#0 CACATTTATTTCATCAGCTACACAACACAGGATAAC--ATGATACCAACACCA-ACATCA 117
consensus_15263#1 CACATTTATTTCATCAGCTACACAACACAGGATAAC--ATGATACCAACACCA-ACATCA 77
consensus_15263#2 CACATTTATTTCATCAGCTACACAACACAGGATAAC--ATGATACCAACACCA-ACATCA 81
consensus_15263#3 GGTGTTGGTATCAT--GTTNTCCTGTGTTGTGTAGCTGATGAAATAAATGTGATGCATTG 82
** * **** * * * * ** * **** * ** * ***
consensus_15263#0 AACAC-AGTGACAAACCACACAACTACCCAACGCTCAGAAGGGAAGCACGCGGACACCTG 176
consensus_15263#1 AACAC-AGTGACAAACCACACAACTACCCAACGCTCAGAAGGGAAGCACGCGGACACCTG 136
consensus_15263#2 AACAC-AGTGACAAACCACACAACTACCCAACGCTCAAAAGGGAAGCACGCGGACACCTG 140
consensus_15263#3 GTCATTGGTGCTTNAANATAAAATNAATGGAGNANAAAAAANAANAN------------- 129
** *** * * * ** * * * ** *
consensus_15263#0 CATGACGGAGGTCGACAAGGTCGCTCGCCGGTTCAGGAATTATTAAGCCAGCGGCGGAGT 236
consensus_15263#1 CATGACGGAGGTCGACAAGGTCGCTCGCCGGTTCAGGAATTATTAAGCCAGCGGCGGAGT 196
consensus_15263#2 CATGACGGAGGTCGACAAGGTCGCTCGCCGGTTCAGGAATTATTAAGCCAGCGGCGGAGT 200
consensus_15263#3 ------------------------------------------------------------
consensus_15263#0 GAAGAAGTAGATGTCGCCGAGGCGATCGTTCGTCGGCGAGTTGCCGCCGTACACCAGCAG 296
consensus_15263#1 GAAGAAGTAGATGTCGCCGAGGCGATCGTTCGTCGGCGAGTTGCCGCCGTACACCAGCAG 256
consensus_15263#2 GAAAAAGTAAATGTCGCCAAGGCGATCGTTCGTTGGCGAGTTGCCGCCGTACACCAGCAG 260
consensus_15263#3 ------------------------------------------------------------
consensus_15263#0 CCCTCGCCGGCCGTCCACCTCCCCCGCCGAGAACGCGCACCATCCCCTCGGCCCCGGGTG 356
consensus_15263#1 CCCTCGCCGGCCGTCCACCTCCCCCGCCGAGAACGCGCACCATCCCCTCGGCCCCGGGTG 316
consensus_15263#2 CCCTCGCCGGCCGTCCACCTCCCCCT---------TGTCTCGTCCTCTGGCCACCTAGAG 311
consensus_15263#3 ------------------------------------------------------------
consensus_15263#0 GTGCTCGCCCGCGTCGTCCAGCCTCGCCCACGCGCCCGTCTCCGTGTCCAGCGCGAACGC 416
consensus_15263#1 GTGCTCGCCCGCGTCGTCCAGCCTCGCCCACGCGCCCGTCTCCGTGTCCAGCGCGAACGC 376
consensus_15263#2 CCACAAAAGCAGGATGCCCAGCACTCCAGGCAGACGTGTCAATGTGACAGACGGCGACAC 371
consensus_15263#3 ------------------------------------------------------------
consensus_15263#0 CTCGGCGGAGAATTTGCCGGCGCCGAGGTGCCCCAGGTCGCTCGGGTCCACCTCGCCGNC 476
consensus_15263#1 CTCGGCGGAGAATTTGCCGGCGCCGAGGTGCCCCAGGTCGCTCGGGTCCACCTCGCCGTC 436
consensus_15263#2 CGCTGTTGATCTTCCCCT------------------------------------------ 389
consensus_15263#3 ------------------------------------------------------------
consensus_15263#0 GAACACCACCACGTGCTTCCCGATCCCCGCGGCACAGAACACGCTGCGCGGGGACGGCTT 536
consensus_15263#1 GAACACCACCACGTGCTTCCCGATCCCCGNGGCACAGAACACGCTGCGCGGGGACGGCTT 496
consensus_15263#2 ------------------------------------------------------------
consensus_15263#3 ------------------------------------------------------------
consensus_15263#0 GTCGCCGCCGCCGCCGCCGCCGGTGGTCTCGACCGTGGACCACGCGCCCGTGCCCGGGTC 596
consensus_15263#1 GTCGCCGCCGCCGCCGCCGCCGGTGGTCTCGACCGTGGACCACGCGCCCGTGCCCGGGTC 556
consensus_15263#2 ------------------------------------------------------------
consensus_15263#3 ------------------------------------------------------------
consensus_15263#0 GTAGCAGTGCACGTCGTCCAGCTTCTTCGCCGGAGAAGCCCGTCACCACCCACACCTTCC 656
consensus_15263#1 GTAGCAGTGCACGTCGTCCAGCT-CCTCGCCGGAGAAGCCGTACACCACCCACACCTTCC 615
consensus_15263#2 ------------------------------------------------------------
consensus_15263#3 ------------------------------------------------------------
consensus_15263#0 CGCCGGCGACGGCCAGCCCGGGGCCTCCCCGCGGCTTGCACGCCTCGCCCGGCGACGGCA 716
consensus_15263#1 CGCCGGCGACGGCCAGCCCGGGGCCTCCCCGCGGCTTGCACGCCTCGCCCGGCGACGGCA 675
consensus_15263#2 ------------------------------------------------------------
consensus_15263#3 ------------------------------------------------------------
consensus_15263#0 GCGCCTCCCACCGCCCGGCGGCGACGTCGTAGGCCCACAGGTCGTTGAGGCGGCCGGCGT 776
consensus_15263#1 GCGCCTCCCACCGCCCGGCGGCGACGTCGTAGGCCCACAGGTCGTTGAGGCGGCCGGCGT 735
consensus_15263#2 ------------------------------------------------------------
consensus_15263#3 ------------------------------------------------------------
consensus_15263#0 CGCCGCACCCGCCGAACACGTACACCTTCCCGCCCCCCGCGGCGTCGGCCACCATGGAGT 836
consensus_15263#1 CGCCGCACCCGCCGAACACGTACACCTTCCCGCCCCCCGCGGCGTCGGCCACCATGGAGT 795
consensus_15263#2 ------------------------------------------------------------
consensus_15263#3 ------------------------------------------------------------
consensus_15263#0 GGTAGCTCCGGTGCGGCGGGCCGTCGCCGGCGCCGGAGGACAGCAGCGTCCATCTGTTGG 896
consensus_15263#1 GGTAGCTCCGGTGCGGCGGGCCGTCGCCGGCGCCGGAGGACAGCAGCGTCCATCTGTTGG 855
consensus_15263#2 ------------------------------------------------------------
consensus_15263#3 ------------------------------------------------------------
consensus_15263#0 TCGCCGTGTCAAACGAGTAGAGCTCGTTCAGCTCCTTGTGCTCCTGGTCGCGACCGCCGA 956
consensus_15263#1 TCGCCGTGTCAAACGAGTAGAGCTCGTTCAGCTCCTTGTGCTCCTGGTCGCGACCGCCGA 915
consensus_15263#2 ------------------------------------------------------------
consensus_15263#3 ------------------------------------------------------------
consensus_15263#0 ACATGTAGACGGTGGCGCCGACGGACGCCATGGTGACGCCGACGCGCGGCGGCGGCACGT 1016
consensus_15263#1 ACATGTAGACGGTGGCGCCGACGGACGCCATGGTGACGCCGACGCGCGGCGGCGGCACGT 975
consensus_15263#2 ------------------------------------------------------------
consensus_15263#3 ------------------------------------------------------------
consensus_15263#0 CGCCGGAGGCGTCCAGCGCCGACCAGCACTGCGACTTGAGGTCGAAGGCGTACATGGCGT 1076
consensus_15263#1 C-CCGGAGGCGTCCAGCGCCGACCAGCACTGCGACTTGAGGTCGAAGGCGTACATGGCGT 1034
consensus_15263#2 ------------------------------------------------------------
consensus_15263#3 ------------------------------------------------------------
consensus_15263#0 TGTCCACCGGCACGCGCGGCGTGAACTCGCCGCCGAACGCGTACGCCGTGCCGCCGACGA 1136
consensus_15263#1 TGTCCACCGGCACGCGCGGCGTGAACTCGCCGCCGAANGCGTACGCCGTGCCGCCGACGA 1094
consensus_15263#2 ------------------------------------------------------------
consensus_15263#3 ------------------------------------------------------------
consensus_15263#0 GGGTGATGGCGTGGGAGCTTCTTGCTCCCGGCCCATCTCCCTTCTGCTCTAGCTGCGCGT 1196
consensus_15263#1 GGGTGATGGCGTGGGAGCTTCTTGCTCCCGGCCCATCTCCCTTCTGCTCTAGCTTCACCC 1154
consensus_15263#2 ------------------------------------------------------------
consensus_15263#3 ------------------------------------------------------------
consensus_15263#0 GATTAATTAATTAATTAACTGATGTCAATTACTAATCAAATTAGACAAAACTGGATGCTG 1256
consensus_15263#1 AGGTG------CCAGCAGCCATTGGCA-----TGAACAGATTGGAGCTCTGCTTCCTCTG 1203
consensus_15263#2 ------------------------------------------------------------
consensus_15263#3 ------------------------------------------------------------
consensus_15263#0 CAATCTGCAAAGAAAATTACTACTCTCTCGCTGAGCAATTTGTGTTCGAAGATTATTAGT 1316
consensus_15263#1 CAGCCTG----AGAACTTGCCTTTCTCC-----ACCAATCTG-GCCAGAGGCCAAGTGAT 1253
consensus_15263#2 ------------------------------------------------------------
consensus_15263#3 ------------------------------------------------------------
consensus_15263#0 ATTTGCTATGAAATTCTTGCGTTCTATACAGGATTGTAATTTCTATAAAATTTCCAGGAA 1376
consensus_15263#1 ATACAA------------------------------------------------------ 1259
consensus_15263#2 ------------------------------------------------------------
consensus_15263#3 ------------------------------------------------------------
consensus_15263#0 TTCACTAATTAGTTTAAGTGACATCTAATATGTGGATGTCTATATGTGGCGGCGCTTTTT 1436
consensus_15263#1 ------------------------------------------------------------
consensus_15263#2 ------------------------------------------------------------
consensus_15263#3 ------------------------------------------------------------
consensus_15263#0 ATTTGCATATGTTCATGAGCCTAATGGCCC 1466
consensus_15263#1 ------------------------------
consensus_15263#2 ------------------------------
consensus_15263#3 ------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||