cluster # 1529

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Oryza sativa
cluster # 1529 cluster # 1529 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1529#0 length = 1473 sequences # 1

consensus_1529#1 length = 880 sequences # 1

consensusID : consensus_1529#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1473
fasta sequence

                              [AGCAGCTAAAAGTCAATCCACGCCACCATCGATCTCTCTATCCAATCCAAGCGCGCAAATCAATGGCAGAGCATTTCAGCCACGCCGGCATGTACATCGGCTACACGGCAGACGCCGCCGCGTCCTCCTCCTCCTCCTCCTCGTCTTCGTCGTCTTCCTCCTCGGAGATGCTTCGGTTCGACACGGGCTGGCCCGACGAGACACCTGCGCCATCCTCCGTGGCGGGGAGGAGGAGGAGCGCGGGCGGTGATCATCGTCAAGGTCGGGGACAGACGGAGGCGGCGGCGGCGTTCATCGGGGTGCGGAGGCGGCCGTGGGGCAGGTTCGCGGCGGAGATCCGGGACTCGACGCGGAACGGCGCGCGGGTGTGGATCGGCACGTTCGACAGCGCCGAGGCCGCCGCGATGGCCTACGACCAGGCCGCGCTCTCGGCGCGTGGCGCCGCCGCGGCGCTCAACTTCCCCGTGGAGCGCGTCCGCGAGTCGCTCCACGCGCTCTCCCTCGGCGCGGCCGGGGGCTCCCCCGTGCTGGCGCTGAAGCGGCGGCACTCGAAGCGAAAGCGGCGCAAGAAAGCTGAACTACTCGCCGCCGCCGCCGCCACCGCCGCGACGGCGAATGCCACGCCGCAGACGCGGAGGATCAGCAAGAGCACGGAATTGACTACTGCGACGACGGACGAGCAGAAGCGGTTCGTCGTGGAGCTTGAGGACCTCGGCGCCGAGTACCTGGAGGAGCTTCTCTGGCTGTCGGAGATCAATGGTGGTAGTGACCCTGCTGACTGATCATCCAAAAGGTTGGCAATTTGCAAGGCACCTCTTGCGAATTACATTTCGCGCGCATGCAGTTGCAATGGAACGTGCAAACTGCAAAAAGCTGCATGCAAGTATGCAACTGCAACTGGAAGTACTACTTGAACACATGCAAGTATGCAACTGCAAGTACTACTTGAACACATGCATGTGTGTTATTGCATCCTACTACTTGCTGTCTGGCTCTCTCTAGAGTGCCAATAAAGTGCAGACAATGCAACACATGCTGGAGCAAGCAACAATTTGGTGGTCACCACCATATTATACGCACAACATGCTGAAGTATTTTCAAGGTGTGTACTTTGGGCGGGGACTGAACTTTATGTCTTTATCGGACACAAGGACCTACTTCCCAAAAGCTAGCTAGCTTGATGCATGCATCTTGCCCCATGGGTACACATAATAATATTATTAAACTTTGTATGGCATGTGCCCAAATTAGTACTATCAACATTTATATGTACTAGTATGACCGTGATTTTACTCTCGAAATTCACTGTACTTAACAACTTTCTATGCTCCCTCGAGTAATTAAGGTAAAAGAGAGTAACTCAAAAATACGTTAAGCTACCATTAAACACTTTCAGCTTGTTGTTAAACGGAATACTAGCTAGTGTGTACAAGAAGATGAACTGAATGAACAAAAGGAAAATCTAGCGGGGAA]

[+] EMBL AK062612             [AGCAGCTAAAAGTCAATCCACGCCACCATCGATCTCTCTATCCAATCCAAGCGCGCAAATCAATGGCAGAGCATTTCAGCCACGCCGGCATGTACATCGGCTACACGGCAGACGCCGCCGCGTCCTCCTCCTCCTCCTCCTCGTCTTCGTCGTCTTCCTCCTCGGAGATGCTTCGGTTCGACACGGGCTGGCCCGACGAGACACCTGCGCCATCCTCCGTGGCGGGGAGGAGGAGGAGCGCGGGCGGTGATCATCGTCAAGGTCGGGGACAGACGGAGGCGGCGGCGGCGTTCATCGGGGTGCGGAGGCGGCCGTGGGGCAGGTTCGCGGCGGAGATCCGGGACTCGACGCGGAACGGCGCGCGGGTGTGGATCGGCACGTTCGACAGCGCCGAGGCCGCCGCGATGGCCTACGACCAGGCCGCGCTCTCGGCGCGTGGCGCCGCCGCGGCGCTCAACTTCCCCGTGGAGCGCGTCCGCGAGTCGCTCCACGCGCTCTCCCTCGGCGCGGCCGGGGGCTCCCCCGTGCTGGCGCTGAAGCGGCGGCACTCGAAGCGAAAGCGGCGCAAGAAAGCTGAACTACTCGCCGCCGCCGCCGCCACCGCCGCGACGGCGAATGCCACGCCGCAGACGCGGAGGATCAGCAAGAGCACGGAATTGACTACTGCGACGACGGACGAGCAGAAGCGGTTCGTCGTGGAGCTTGAGGACCTCGGCGCCGAGTACCTGGAGGAGCTTCTCTGGCTGTCGGAGATCAATGGTGGTAGTGACCCTGCTGACTGATCATCCAAAAGGTTGGCAATTTGCAAGGCACCTCTTGCGAATTACATTTCGCGCGCATGCAGTTGCAATGGAACGTGCAAACTGCAAAAAGCTGCATGCAAGTATGCAACTGCAACTGGAAGTACTACTTGAACACATGCAAGTATGCAACTGCAAGTACTACTTGAACACATGCATGTGTGTTATTGCATCCTACTACTTGCTGTCTGGCTCTCTCTAGAGTGCCAATAAAGTGCAGACAATGCAACACATGCTGGAGCAAGCAACAATTTGGTGGTCACCACCATATTATACGCACAACATGCTGAAGTATTTTCAAGGTGTGTACTTTGGGCGGGGACTGAACTTTATGTCTTTATCGGACACAAGGACCTACTTCCCAAAAGCTAGCTAGCTTGATGCATGCATCTTGCCCCATGGGTACACATAATAATATTATTAAACTTTGTATGGCATGTGCCCAAATTAGTACTATCAACATTTATATGTACTAGTATGACCGTGATTTTACTCTCGAAATTCACTGTACTTAACAACTTTCTATGCTCCCTCGAGTAATTAAGGTAAAAGAGAGTAACTCAAAAATACGTTAAGCTACCATTAAACACTTTCAGCTTGTTGTTAAACGGAATACTAGCTAGTGTGTACAAGAAGATGAACTGAATGAACAAAAGGAAAATCTAGCGGGGAA]




>consensus_1529#0
AGCAGCTAAAAGTCAATCCACGCCACCATCGATCTCTCTATCCAATCCAAGCGCGCAAAT
CAATGGCAGAGCATTTCAGCCACGCCGGCATGTACATCGGCTACACGGCAGACGCCGCCG
CGTCCTCCTCCTCCTCCTCCTCGTCTTCGTCGTCTTCCTCCTCGGAGATGCTTCGGTTCG
ACACGGGCTGGCCCGACGAGACACCTGCGCCATCCTCCGTGGCGGGGAGGAGGAGGAGCG
CGGGCGGTGATCATCGTCAAGGTCGGGGACAGACGGAGGCGGCGGCGGCGTTCATCGGGG
TGCGGAGGCGGCCGTGGGGCAGGTTCGCGGCGGAGATCCGGGACTCGACGCGGAACGGCG
CGCGGGTGTGGATCGGCACGTTCGACAGCGCCGAGGCCGCCGCGATGGCCTACGACCAGG
CCGCGCTCTCGGCGCGTGGCGCCGCCGCGGCGCTCAACTTCCCCGTGGAGCGCGTCCGCG
AGTCGCTCCACGCGCTCTCCCTCGGCGCGGCCGGGGGCTCCCCCGTGCTGGCGCTGAAGC
GGCGGCACTCGAAGCGAAAGCGGCGCAAGAAAGCTGAACTACTCGCCGCCGCCGCCGCCA
CCGCCGCGACGGCGAATGCCACGCCGCAGACGCGGAGGATCAGCAAGAGCACGGAATTGA
CTACTGCGACGACGGACGAGCAGAAGCGGTTCGTCGTGGAGCTTGAGGACCTCGGCGCCG
AGTACCTGGAGGAGCTTCTCTGGCTGTCGGAGATCAATGGTGGTAGTGACCCTGCTGACT
GATCATCCAAAAGGTTGGCAATTTGCAAGGCACCTCTTGCGAATTACATTTCGCGCGCAT
GCAGTTGCAATGGAACGTGCAAACTGCAAAAAGCTGCATGCAAGTATGCAACTGCAACTG
GAAGTACTACTTGAACACATGCAAGTATGCAACTGCAAGTACTACTTGAACACATGCATG
TGTGTTATTGCATCCTACTACTTGCTGTCTGGCTCTCTCTAGAGTGCCAATAAAGTGCAG
ACAATGCAACACATGCTGGAGCAAGCAACAATTTGGTGGTCACCACCATATTATACGCAC
AACATGCTGAAGTATTTTCAAGGTGTGTACTTTGGGCGGGGACTGAACTTTATGTCTTTA
TCGGACACAAGGACCTACTTCCCAAAAGCTAGCTAGCTTGATGCATGCATCTTGCCCCAT
GGGTACACATAATAATATTATTAAACTTTGTATGGCATGTGCCCAAATTAGTACTATCAA
CATTTATATGTACTAGTATGACCGTGATTTTACTCTCGAAATTCACTGTACTTAACAACT
TTCTATGCTCCCTCGAGTAATTAAGGTAAAAGAGAGTAACTCAAAAATACGTTAAGCTAC
CATTAAACACTTTCAGCTTGTTGTTAAACGGAATACTAGCTAGTGTGTACAAGAAGATGA
ACTGAATGAACAAAAGGAAAATCTAGCGGGGAA

consensusID : consensus_1529#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 880
fasta sequence

                              [AAGGGAATAATCAAACACGCCCCGTCACTTCGCCGCACACATCACAGTGATCGCAGCCGCTAAGTCAAACATTCCCAGCTCACAGAGTCACACACATGGAGCAACACAGCCACTGCTGGTACTACGGCGGCGGCATGGCTGTCACCGCAGCCGCCGGTGCCGGCGCGGCGTCGTCGACATCCTCGGAATCGCAGCCGTCTGGCTACGACTACGAGACGGCGGGGAGCGCCGAGGTGTCGGCGCCCGGCGGCGGCGGCGGGCTTCATCGGCGTGCGGAAGCGGCCGTGGGGGAGGTTCGCGGCGGAGATCAGGGACTCCACGCGGAACGGCGTGCGGGTGTGGCTCGGCACGTTCGAGACGGCCGAGGCCGCCGCGATGGCCTACGACCAGGCCGCGCTCTCGGCGCGGGGCGCGGCCGCGGCGCTCAACTTCCCCGTGGAACGCGTGCGCGAGTCGCTCCGCGCGCTCGCGCTCGGCGCGGCCGGAGGCTCGCCCGTGCTGGCGCTGAAGGGGCGGCACTCCAAGCGAAAGCGGCGGAAGAGATCAGAGCTGGCCGGTGCCACGGCGACGGCGAACAAGACGACGACGACGACGTCCGCCACGACCGGCGGGGAGCACAAGCAGATCGTCCTCGAGCTGGAGGACCTCGGCGCCGACTACCTAGAGGAGCTCCTCTGGATGTCCGAGCAAACTAGCCATTGATGATGATGCGAACGAACCTGCAAAAACATAGCTCTCGCGCGCGATCGATCGCGAGTTCAATACTTCAACTCGATCACATCCATGCCTTGCAATGCAGTGTGTGAACTCGACCGATCAGTTGGTAGTGGATTCCATGTGAAAAAAGGCTGCAACGTAACTGCTTCAAATCGTGACATAA]

[+] EMBL AK108503             [AAGGGAATAATCAAACACGCCCCGTCACTTCGCCGCACACATCACAGTGATCGCAGCCGCTAAGTCAAACATTCCCAGCTCACAGAGTCACACACATGGAGCAACACAGCCACTGCTGGTACTACGGCGGCGGCATGGCTGTCACCGCAGCCGCCGGTGCCGGCGCGGCGTCGTCGACATCCTCGGAATCGCAGCCGTCTGGCTACGACTACGAGACGGCGGGGAGCGCCGAGGTGTCGGCGCCCGGCGGCGGCGGCGGGCTTCATCGGCGTGCGGAAGCGGCCGTGGGGGAGGTTCGCGGCGGAGATCAGGGACTCCACGCGGAACGGCGTGCGGGTGTGGCTCGGCACGTTCGAGACGGCCGAGGCCGCCGCGATGGCCTACGACCAGGCCGCGCTCTCGGCGCGGGGCGCGGCCGCGGCGCTCAACTTCCCCGTGGAACGCGTGCGCGAGTCGCTCCGCGCGCTCGCGCTCGGCGCGGCCGGAGGCTCGCCCGTGCTGGCGCTGAAGGGGCGGCACTCCAAGCGAAAGCGGCGGAAGAGATCAGAGCTGGCCGGTGCCACGGCGACGGCGAACAAGACGACGACGACGACGTCCGCCACGACCGGCGGGGAGCACAAGCAGATCGTCCTCGAGCTGGAGGACCTCGGCGCCGACTACCTAGAGGAGCTCCTCTGGATGTCCGAGCAAACTAGCCATTGATGATGATGCGAACGAACCTGCAAAAACATAGCTCTCGCGCGCGATCGATCGCGAGTTCAATACTTCAACTCGATCACATCCATGCCTTGCAATGCAGTGTGTGAACTCGACCGATCAGTTGGTAGTGGATTCCATGTGAAAAAAGGCTGCAACGTAACTGCTTCAAATCGTGACATAA]




>consensus_1529#1
AAGGGAATAATCAAACACGCCCCGTCACTTCGCCGCACACATCACAGTGATCGCAGCCGC
TAAGTCAAACATTCCCAGCTCACAGAGTCACACACATGGAGCAACACAGCCACTGCTGGT
ACTACGGCGGCGGCATGGCTGTCACCGCAGCCGCCGGTGCCGGCGCGGCGTCGTCGACAT
CCTCGGAATCGCAGCCGTCTGGCTACGACTACGAGACGGCGGGGAGCGCCGAGGTGTCGG
CGCCCGGCGGCGGCGGCGGGCTTCATCGGCGTGCGGAAGCGGCCGTGGGGGAGGTTCGCG
GCGGAGATCAGGGACTCCACGCGGAACGGCGTGCGGGTGTGGCTCGGCACGTTCGAGACG
GCCGAGGCCGCCGCGATGGCCTACGACCAGGCCGCGCTCTCGGCGCGGGGCGCGGCCGCG
GCGCTCAACTTCCCCGTGGAACGCGTGCGCGAGTCGCTCCGCGCGCTCGCGCTCGGCGCG
GCCGGAGGCTCGCCCGTGCTGGCGCTGAAGGGGCGGCACTCCAAGCGAAAGCGGCGGAAG
AGATCAGAGCTGGCCGGTGCCACGGCGACGGCGAACAAGACGACGACGACGACGTCCGCC
ACGACCGGCGGGGAGCACAAGCAGATCGTCCTCGAGCTGGAGGACCTCGGCGCCGACTAC
CTAGAGGAGCTCCTCTGGATGTCCGAGCAAACTAGCCATTGATGATGATGCGAACGAACC
TGCAAAAACATAGCTCTCGCGCGCGATCGATCGCGAGTTCAATACTTCAACTCGATCACA
TCCATGCCTTGCAATGCAGTGTGTGAACTCGACCGATCAGTTGGTAGTGGATTCCATGTG
AAAAAAGGCTGCAACGTAACTGCTTCAAATCGTGACATAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1529#0      AGCAGCTAAAAGTCAATCCACGCCACCATCGATCTCTCTATCCAATCCAAGCG--CGCAA 58
consensus_1529#1      --AAGGGAATAATCAAAC-ACGCC-CCGTCACTTCGCCGCACACATCACAGTGATCGCAG 56
                         **  ** * **** * ***** ** **  *    *   *  ***  ** *  **** 

consensus_1529#0      ATCAATGGCAGAGCATTTCAGCCACGCCGGCATGTACATCGGCTACACGGCAGACGCCGC 118
consensus_1529#1      CCGCTAAGTCAAACATTCCCAGCTCACAGAGTCACACACATGGAGCAACACAGCCACTGC 116
                             *   * **** *   * * * *      ***   *   **   *** * * **

consensus_1529#0      CGCGTCCTCCTCCTCCTCCTCCTCGTCTTCGTCGTCTTCCTCCTCGGAGATGCTTCGGTT 178
consensus_1529#1      TGGTACTACGGCGGCGGCATGGCTGTCACCGCAGCCGCCGGTGCCGGCGCGGCGTCG--T 174
                       *   *  *  *  *  * *    ***  **  * *  *     *** *  ** ***  *

consensus_1529#0      CGACACGGGCTGGCCCGACGAGACACCTGCGCCATCCTCCGTGGCGGGGAGGAGGAGGAG 238
consensus_1529#1      CGACATCCTCGGAATCGC--AGCCGTCTGGCTACGACTACGAGACGGCGGGGAG------ 226
                      *****    * *   **   ** *  ***       ** ** * *** * ****      

consensus_1529#0      CGCGGGCGGTGATCATCGTCAAGGTCGGGGACAGACGGAGGCGGCGGCGGCGTTCATCGG 298
consensus_1529#1      ----------------CGCCGAGGT-GTCGGCGCCCGGCGGCGGCGGCGGGCTTCATCGG 269
                                      ** * **** *  * *   *** ***********  ********

consensus_1529#0      GGTGCGGAGGCGGCCGTGGGGCAGGTTCGCGGCGGAGATCCGGGACTCGACGCGGAACGG 358
consensus_1529#1      CGTGCGGAAGCGGCCGTGGGGGAGGTTCGCGGCGGAGATCAGGGACTCCACGCGGAACGG 329
                       ******* ************ ****************** ******* ***********

consensus_1529#0      CGCGCGGGTGTGGATCGGCACGTTCGACAGCGCCGAGGCCGCCGCGATGGCCTACGACCA 418
consensus_1529#1      CGTGCGGGTGTGGCTCGGCACGTTCGAGACGGCCGAGGCCGCCGCGATGGCCTACGACCA 389
                      ** ********** ************* *  *****************************

consensus_1529#0      GGCCGCGCTCTCGGCGCGTGGCGCCGCCGCGGCGCTCAACTTCCCCGTGGAGCGCGTCCG 478
consensus_1529#1      GGCCGCGCTCTCGGCGCGGGGCGCGGCCGCGGCGCTCAACTTCCCCGTGGAACGCGTGCG 449
                      ****************** ***** ************************** ***** **

consensus_1529#0      CGAGTCGCTCCACGCGCTCTCCCTCGGCGCGGCCGGGGGCTCCCCCGTGCTGGCGCTGAA 538
consensus_1529#1      CGAGTCGCTCCGCGCGCTCGCGCTCGGCGCGGCCGGAGGCTCGCCCGTGCTGGCGCTGAA 509
                      *********** ******* * ************** ***** *****************

consensus_1529#0      GCGGCGGCACTCGAAGCGAAAGCGGCGCAAGAAAGCTGAACTACTCGCCGCCGCCGCCGC 598
consensus_1529#1      GGGGCGGCACTCCAAGCGAAAGCGGCGGAAGAGATCAGAGCTG------------GCCGG 557
                      * ********** ************** **** * * ** **             **** 

consensus_1529#0      CACCGCCGCGACGGCGAATGCCACGCCGCAGACGCGGAGGATCAGCAAGAGCACGGAATT 658
consensus_1529#1      TGCCACGGCGACGGCGAACAAGACGACGACGACGA------------------------C 593
                        ** * ***********    *** **  ****                          

consensus_1529#0      GACTACTGCGACGACGGACGAGCAGAAGCGGTTCGTCGTGGAGCTTGAGGACCTCGGCGC 718
consensus_1529#1      GTCCGCCACGACCGGCGGGGAGCACAAGCAGATCGTCCTCGAGCTGGAGGACCTCGGCGC 653
                      * *  *  ****    *  ***** **** * ***** * ***** **************

consensus_1529#0      CGAGTACCTGGAGGAGCTTCTCTGGCTGTCGGAGATCAATGGTGGTAG-TGACCCTGCTG 777
consensus_1529#1      CGACTACCTAGAGGAGCTCCTCTGGATGTCCGAGCAAACTAGCCATTGATGATGATGC-G 712
                      *** ***** ******** ****** **** ***   * * *   * * ***   *** *

consensus_1529#0      ACTGATCATCCAAAAGGTTGGCAATTTGCAAGGCACCTCTTGCGAATTACATTTCGCGCG 837
consensus_1529#1      AACGAACCTGCAAAAACATAGCT-CTCGCGCGCGATCGATCGCGAGTTCAATACTTCA-- 769
                      *  ** * * *****   * **   * **  *  * *  * **** **  **    *   

consensus_1529#0      CATGCAGTTGCAATGGAACGTGCAAACTGCAAAAAGCTGCATGCAAGTATGCAACTGCAA 897
consensus_1529#1      -ACTCGATCACATCCATGCCT-TGCAATGCAGTGTG-TGAACTCGACCGATCAGTTGGTA 826
                       *  *  *  **      * *    * ****    * ** *  * *     **  **  *

consensus_1529#0      CTGGAAGTACTACTTGAACACATGCAAGTATGCAACTGCAAGTACTACTTGAACACATGC 957
consensus_1529#1      GTGGA--TTCCATGTGAAAAAAGGCTGCAACGTAACTGCTTCAAATCGTGACATAA---- 880
                       ****  * * *  **** * * **    * * ******    * *  *   * *     

consensus_1529#0      ATGTGTGTTATTGCATCCTACTACTTGCTGTCTGGCTCTCTCTAGAGTGCCAATAAAGTG 1017
consensus_1529#1      ------------------------------------------------------------
                                                                                  

consensus_1529#0      CAGACAATGCAACACATGCTGGAGCAAGCAACAATTTGGTGGTCACCACCATATTATACG 1077
consensus_1529#1      ------------------------------------------------------------
                                                                                  

consensus_1529#0      CACAACATGCTGAAGTATTTTCAAGGTGTGTACTTTGGGCGGGGACTGAACTTTATGTCT 1137
consensus_1529#1      ------------------------------------------------------------
                                                                                  

consensus_1529#0      TTATCGGACACAAGGACCTACTTCCCAAAAGCTAGCTAGCTTGATGCATGCATCTTGCCC 1197
consensus_1529#1      ------------------------------------------------------------
                                                                                  

consensus_1529#0      CATGGGTACACATAATAATATTATTAAACTTTGTATGGCATGTGCCCAAATTAGTACTAT 1257
consensus_1529#1      ------------------------------------------------------------
                                                                                  

consensus_1529#0      CAACATTTATATGTACTAGTATGACCGTGATTTTACTCTCGAAATTCACTGTACTTAACA 1317
consensus_1529#1      ------------------------------------------------------------
                                                                                  

consensus_1529#0      ACTTTCTATGCTCCCTCGAGTAATTAAGGTAAAAGAGAGTAACTCAAAAATACGTTAAGC 1377
consensus_1529#1      ------------------------------------------------------------
                                                                                  

consensus_1529#0      TACCATTAAACACTTTCAGCTTGTTGTTAAACGGAATACTAGCTAGTGTGTACAAGAAGA 1437
consensus_1529#1      ------------------------------------------------------------
                                                                                  

consensus_1529#0      TGAACTGAATGAACAAAAGGAAAATCTAGCGGGGAA 1473
consensus_1529#1      ------------------------------------