|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15453#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 789 fasta sequence
[AATCACATACACAAGAAGAGCGTGGAAGAGAGGGAGGAGAGGGGAGAGAGCAATGCCGACGGGGAGGTTGAGCGGCAACATCACGCAGGACTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCG-AAGGCGGC-GGACCTTAAGTCGACGAGGG-CGGTGAACCAGGCGATGCGGACGGGGGCGCCGGTGGAGACGGTGCGGAAGGCGGCAGCGGGCACGAACAAGGCGGCGGC-GGGGGCGGCGGCGCCCGCGCGGAAGCTGGACGAGTCGACGGAGCCGGCGGGGC-TGGGGCGCGTGGGCGCGGAGGTGCGCGGCGCGA-TCCAGAAGGCCCGGGTGGCGAAGGGGTGGAGCCAGGCGGAGCTCGCCAAGCGCATCAACGAGCGGGCGCAGGTGGTGCAGGAGTACGAGAGCGGCAAGGCCGTCCCCGTCCAGGCCGTGCTCGCCAAGATGGAGCGCGCGCTCGAGGTCAAGCTCCGCGGCAAGGCGGTCGGCGCGCCGGCCGCGCCCGCCGGCGCCAAGTGAATCCTTCGTGGCCGGAATCGCACCTCCGATCCCTCCTAGTTAGGCGTTGATCCGTTTGTGAATGTGCAGTTTGTTTGTGTTCTTGGCTTAATTTTGGGGGGAAACTATGATATGCTAACTGGCTCAGACGCATGTGAAGTGATGATGGCTAGAAATTGAATTTCCGTTGGATTTGTGAACACATAGTTTAGTTGAAGCGCTTTTCGATCCGGTTGTGTTCAATCGTCGTTGTGCTCTGCTTCTAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK122052 [AATCACATACACAAGAAGAGCGTGGAAGAGAGGGAGGAGAGGGGAGAGAGCAATGCCGACGGGGAGGTTGAGCGGCAACATCACGCAGGACTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCG AAGGCGGC GGACCTTAAGTCGACGAGGG CGGTGAACCAGGCGATGCGGACGGGGGCGCCGGTGGAGACGGTGCGGAAGGCGGCAGCGGGCACGAACAAGGCGGCGGC GGGGGCGGCGGCGCCCGCGCGGAAGCTGGACGAGTCGACGGAGCCGGCGGGGC TGGGGCGCGTGGGCGCGGAGGTGCGCGGCGCGA TTCAGAAGGCCCGGGTGGCGAAGGGGTGGAGCCAGGCGGAGCTCGCCAAGCGCATCAACGAGCGGGCGCAGGTGGTGCAGGAGTACGAGAGCGGCAAGGCCGTCCCCGTCCAGGCCGTGCTCGCCAAGATGGAGCGCGCGCTCGAGGTCAAGCTCCGCGGCAAGGCGGTCGGCGCGCCGGCCGCGCCCGCCGGCGCCAAGTGAATCCTTCGTGGCCGGAATCGCACCTCCGATCCCTCCTAGTTAGGCGTTGATCCGTTTGTGAATGTGCAGTTTGTTTGTGTTCTTGGCTTAATTTTGGGGGGAAACTATGATATGCTAACTGGCTCAGACGCATGTGAAGTGATGATGGCTAGAA ]
[+] EMBL AK119729 [ TACACAAGAAGAGCGTGGAAGAGAGGGAGGAGAGGGGAGAGAGCAATGCCGACGGGGAGGTTGAGCGGCAACATCACGCAGGACTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCG AAGGCGGC GGACCTTAAGTCGACGAGGG CGGTGAACCAGGCGATGCGGACGGGGGCGCCGGTGGAGACGGTGCGGAAGGCGGCAGCGGGCACGAACAAGGCGGCGGC GGGGGCGGCGGCGCCCGCGCGGAAGCTGGACGAGTCGACGGAGCCGGCGGGGC TGGGGCGCGTGGGCGCGGAGGTGCGCGGCGCGA TCCAGAAGGCCCGGGTGGCGAAGGGGTGGAGCCAGGCGGAGCTCGCCAAGCGCATCAACGAGCGGGCGCAGGTGGTGCAGGAGTACGAGAGCGGCAAGGCCGTCCCCGTCCAGGCCGTGCTCGCCAAGATGGAGCGCGCGCTCGAGGTCAAGCTCCGCGGCAAGGCGGTCGGCGCGCCGGCCGCGCCCGCCGGCGCCAAGTGAATCCTTCGTGGCCGGAATCGCACCTCCGATCCCTCCTAGTTAGGCGTTGATCCGTTTGTGAATGTGCAGTTTGTTTGTGTTCTTGGCTTAATTTTGGGGGGAAACTATGATATGCTAACTGGCTCAGACGCATGTGAAGTGATGATGGCTAGAAATTAAATTTCCGTTGG ]
[+] EMBL OS0224A [ ctatatGAAGAGCGTNGAAGATAGGGAGGAGAGGGGAGATAGCAATGCCTACGGGGAGGTTGAGCGGCAACATCACGCAGGACTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCG AA CGTCTGGACCTTAAGTCGACGAGGG CGGTGAACCAGGCGATGCGGACGGGGGCGCCGGTGGAGACGGTGCGGAAGGCGGCAGCTGGCACGAACAAGGCGGCGGCGGGGGGCGGCGGCG CCGCGCGGAAGCTGGACGAGTCGACGGAGCCGGCGGGGC TTGGGCGCGTTGGC CGGAGGTTCGCTGCGCGA TCCAGAAGGCCCGGGTGGCGAAGGGTTGGAGCCAGGCGGACTTCGCCAAGCGCATCAACGATNGNGCNCANGTtg ]
[+] EMBL OSC21621 [ GAAGAGCGTGGAAGAGAGGGAGGAGAGGGGAGAGAGCAATGCCGACGGGGAGGTTGAGCGGCAACATCACGCAGGACTNGGAGCCGGTGGTGCTGCGGCGGACGAAGCCG AAGGNNCN GGACCTTAAGTCGACGAGGG CGGTGAACCAGGCGATGCGGACGGGGGCGCCGGTGGAGACGGTGCGGAAGGCGGCAGCGGGCACGNACAAGGCGGCGGC GGGGGCGGCGGNG CCGCGCGGAAG TGGACGAGTCGACGGAGCCGGCGGGGCTTNGGGTGCNTTGGC CGGAGGTNCGCGGCGCGATTCCAGA ]
[+] EMBL OSC08051 [ TGGAAGAGAGGGAGGAGAGGGGAGAGAGCAATGCCGACGGGGAGGTTGAGCGGCAACATCACGCAGGACTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCG AANG TNC GGACCTTAAGTCGACGAGGG CGGTGAACCAGGCGATGCGGACGGGGGCGCCGGTGGAGACGGTGCGGAAGGCGGCAGCGGGCACGAACAAGGCGGCGGC GGGGGCGGCGGCG CCGCGCGGAAGCTGGACGAGTCGACGGAGCCGGCGGGNC TNNGACGCGTNGGCGCGGAGGTGCGCGGCGC ]
[+] EMBL AU197629 [ GGAGGAGAGGGGAGAGAGCAATGCCGACGGGGAGGTTGAGCGGCAACATCACGCAGGACTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCG AAGGCGGC GGACCTTAAGTCGACGAGGGCCGGTGAACCAGGCGATGCGGACGGGGGCGCCGGTGGAGACGGTGCGGAAGGCGGCAGCGGGCACGAACAAGGCGGCGGC GGGGGCGGCGGCGCCCGCGCGGAAGCTGGACGAGTCGACGGAGCCGGCGGGGC TGGGGCGCGTGGGCGCGGAGGTGCGCGGCGCGA TCCAGAAGGCCCGGGTGGCGAAGGGGTGGAGCCAGGCGGAGCTCGCCAAGCGCATCAACGAGCGGGCGCAGGTGGTGCAGGAGTACGAGAGCGGCAAGGCCGTCCCCGTCCAGGCCGTGCTCGCCAAGATGGAGCGCGCGCTCGAGGTC ]
[+] EMBL AU165257 [ GAGGGGAGAGAGCAATGCCGACGGGGAGGTTGAGCGGCAACATCACGCAGGACTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCG AAGGCGGC GGACCTTAAGTCGACGAGGG CGGTGAACCAGGCGATGCGGACGGGGGCGCCGGTGGAGACGGTGCGGAAGGCGGCAGCGGGCACGAACAAGGCGGCGGC GGGGGCGGCGGCGCCCGCGCGGAAGCTGGACGAGTCGACGGAGCCGGCGGGGC TGGGGCGCGTGGGCGCGGAGGTGCGCGGCGCGA TCCAGAAGGCCCGGGTGGCGAAGGGGTGGAGCCAGGCGGAGCTCGCCAAGCGCATCAACGAGC GGCGCAGGTGGTGCAGGAGTACGAGAGCGGCAAGGCCGTCCCCGTCCAGGCCGTGCTCGCCAAGATGGAGCGCGCGCTCGAGGTCAAGCTCCGC ]
[+] EMBL OSC28281 [ GAGAGAGCAATGCCGACGGGGAGGTTGAGCGGCAACATCACGCAGGACTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCG AANG GTC GGACCTTAAGTCGACGAGGG CGGTGAACCAGGCGATGCGGACGGGGGCGCCGGTGGAGACGGTGCGGAAGGCGGCAGCGGGCACGAACAAGGCGGCGGC GGGGGCGGCGGCG CCNCNCGGAAGCTGGACGAGTCGACGGAGCCGGCGGGGC T ]
[+] EMBL OSC05331 [ GGAGGTTGAGCGGCAACATCACGCAGGACTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCG AA CGTCNGGACCTTAAGTCGACGAGGG CGGTGAACCAGGCGATGCGGACGGGGGCGCCGGTGGAGACGGTGCGGAAGGCGGCAGCGGGCACGAACAAGGCGGCGGC GGGGGCGGCGGCG CCGCGCGGAAGCTGGACGAGTCGACGGAGCCGTCGGGGC TGGGGCGCGTGGGC CGGAGGTGCGCGGCG GA TCCAGAAGGCCCGGGTGGCGAAGGGGTGGAGCCAGGCGGA NTCGNCAAGCGCATCAACGAGCGGTCGCAGGTGGTGCAGGAGTACGAGAGC ]
[+] EMBL OSC05511 [ GGAGGTTGAGCGGCAACATCACGCAGGACTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCG AA CGNCTGGACCTTAAGTCGACGAGGG CGGTGAACCAGGCGATGCGGACGGGGGCGCCGGTGGAGACGGTGCGGAAGGCGGCAGCGGGCACGAACAAGGCGGCGGC GGGGGCGGCGGCG CCGCGCGGAAGCTGGACGAGTCGACGGAGCCGGCGGGGC TGGGGCGCGTNGGCGCGGAGGTGCGCGGCGCGA TCCAGAAGGCCCGGGTGGCGAAGGGGTGGAGCCAGGCGGANTTNGCCAAGCGCATCA ]
[+] EMBL AU093167 [ AGCCGTTGGTGCTGCGGCGGACGAAGCCGAAAGGCGGC GGACCTTAAGTCGACGAGGG CGTTGAACCAGGCGATGCGGACGGGGGCGCCGGTGGAGACGGTGCGGAAGGCGGCAGCGGGNACGAACAAGGCGGCGGC GGGGGCGGCGGCGCCCGCGCGGAAGCTGGACGAGTCGACGGAGCCGGCGGGGC TGGGGCGCGTGGGCGCGGAGGTGCGCGGCGCGA TCCAGAAGGCCCGGGTGGCGAAGGGGTGGAGCCAGGCGGAGCTCGCCAAGCGCATCAACGAGCGGGCGCAGGTGGTGCAGGAGTACGAGAGCGGCAAGGCCGTCCCCGTCCAGGCCGTGCTCGCCAAGATGGAGCGCGCGCTCGAGGTCAAGCTCCGCGGCAAGGCGGTCGGCGCGCCGGCCGCGCCCGCCGGCGCCAAGTGAATCCTTCGTGGCCGGAATCGCACCTCCGATCCCTCCTAGTTAGGCGTTGATCCGTTTGTGAATGTGCAGTTTGTTTGTGTTCTTGGCTTAATTTTGGGGGGAAACTATGATATGCTAACTGGCTCAGACGCATGTGAAGTGATGATGGCTAGAAATTGAATTTCCGTTGGATTTGTGAACACATAGTTTAGTTGAAGCGCTTTTCGATCCGGTTGTGTTCAATCGTCGTTGTGCTCTGCTTCTAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU077570 [ CGCCGGTGGAGACGGTGCGGAAGGCGGCAGCGGGCACGAACAAGGCGGCGGC GGGGGCGGCGGCGCCCGCGCGGAAGCTGGACGAGTCGACGGAGCCGGCGGGGC TGGGGCGCGTGGGCGCGGAGGTGCGCGGCGCGA TCCAGAAGGCCCGGGTGGCGAAGGGGTGGAGCCAGGCGGAGCTCGCCAAGCGCATCAACGAGCGGGCGCAGGTGGTGCAGGAGTACGAGAGCGGCAAGGCCGTCCCCGTCCAGGCCGTGCTCGCCAAGATGGAGCGCGCGCTCGAGGTCAAGCTCCGCGGCAAGGCGGTCGGCGCGCCGGCCGCGCCCGCCGGCGCCAAGTGAATCCTTCGTGGCCGGAATCGCACCTCCGATCCCTCCTAGTTAGGCGTTGATCCGTTTGTGAATGTGCAGTTTGTTTGTGTTCTTGGCTTAATTTTGGGGGGAAACTATGATATGCTAACTGGCTCAGACGCATGTGAAGTGATGATGGCTAGAAATTGAATTTCCGTTGGATTTGTGAACAaaaaaaaa ]
[+] EMBL C98004 [ CGCCAAGTGAATCCTTCGTGGCCGGAATCGNNCCTCCGATCCCTCCTAGTTAGGCGTTGATCCGTTTGTGAATGTGCAGTTTGTTTGTGTTCTTGGCTTAATTTTGGGGGGAAACTATGATATGCTAACTGGNTCAGACGCATGTGAAGTGATGATGGCTAGAAATTGAATTTCCGTTGGATTTGTGAACACATAGTTTAGTTGAAGCGCTTTTCGATCCGGTTGTGTTCAATCGTCGTTGTGCTCTGCTTCTAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15453#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 677 fasta sequence
[CAGTCCAACGCGGCTTCGCTTCCGGTGCCGTGTCCTCCCTAGAAATCATCGTCCCTA-AATTGGACAAAATTACACTGAACTACGCAGATCCATCGTTGCGACCACGCAGAAGATCTCCGTGCTCG--GG-TGGC--G-CGGCGGGATGGCGTCCTCATCGGCGGCGGCGGCGACGTACCGGTGCGCGGAGTGGGGGGCGGACCTGAACCTGACGGCGGCGCAGCTATACCCGGAGGGGGTCTACTTCGAGGCCGGCAACAAGGGGACGCTCTCCTTCTCGTGGGTGGACGAGTCGCGGCTGCGGTTCGCGCCGGAGGACAAGATCCGCCCCTTCTTCGAGACGCTCAACTACTGGGGGATCCAGCGGAAGCGCACCCGCATCAGCTGCGACGCCTGCGGCCGCCTCCTCGGCTACGTCTACGACGACGGGCCGCCGGCCATGGACGGCACCGGCCAGTTCGGGATGGGCCCCAGCCAGGTCATCCCTCGCCGGCCGAGGTACCGGGTCAAGACCAAGGCCGTCACCGTGGTCAATCCTCCGGCTACCGCACCGTACAGATGAGATGAAACCTTGTACATCAACATCGTAGTAGCGTTCGGTGTTACAAGTAGGACATGTAAAACGTATTCCATTGTGATCTTGGTTCGCCGTTGTTGCAAATAAATAAATTGTAGTAGTACTA]
[+] EMBL AK107476 [CAGTCCAACGCGGCTTCGCTTCCGGTGCCGTGTCCTCCCTAGAAATCATCGTCCCTA AATTGGACAAAATTACACTGAACTACGCAGATCCATCGTTGCGACCACGCAGAAGATCTCCGTGCTCG GG TGGC G CGGCGGGATGGCGTCCTCATCGGCGGCGGCGGCGACGTACCGGTGCGCGGAGTGGGGGGCGGACCTGAACCTGACGGCGGCGCAGCTATACCCGGAGGGGGTCTACTTCGAGGCCGGCAACAAGGGGACGCTCTCCTTCTCGTGGGTGGACGAGTCGCGGCTGCGGTTCGCGCCGGAGGACAAGATCCGCCCCTTCTTCGAGACGCTCAACTACTGGGGGATCCAGCGGAAGCGCACCCGCATCAGCTGCGACGCCTGCGGCCGCCTCCTCGGCTACGTCTACGACGACGGGCCGCCGGCCATGGACGGCACCGGCCAGTTCGGGATGGGCCCCAGCCAGGTCATCCCTCGCCGGCCGAGGTACCGGGTCAAGACCAAGGCCGTCACCGTGGTCAATCCTCCGGCTACCGCACCGTACAGATGAGATGAAACCTTGTACATCAACATCGTAGTAGCGTTCGGTGTTACAAGTAGGACATGTAAAACGTATTCCATTGTGATCTTGGTTCGCCGTTGTTGCAAATAAATAAATTGTAGTAGTACTA]
[+] EMBL BI795825 [ TCCGGTGCCGTGTCCTCCCTAGAAATCATCGTCCCTATAATTGGAC AAATTACACTGAACTACGCAGATCCATCGTTGCGGCCACGCAGAAGATCTCCGTGCTCGGTGGCCGGCCGGCCGGCGGGATGGCGTCCTCATCGGCGGCGGCGGCGACGTACCGGTGCGCGGAGT GCGGGCGGACCTGAACCTGACGGCGGCGCAGCTATACCCGGAGGGGGTCTACTTCGAGGCCGGCAACAAGGGGACGCTCTCCTTCTCGTGGGTGGACGAGTCGC GCTGCGGTTCGCGCCGGAGGACAAGATCCGCCCCTTCTTCGAGACGCTCAAC ]
consensusID : consensus_15453#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 546 fasta sequence
[CGGANCCCGNCGGGGCTGGGGCGCGTTGGGCGCGAAGGTGCGCGGCGCGATCCAGAAGGCCCGGGTGGCGAAGGGGTGGAGCCAGCGGAGCTCGCCAAGCGCATCAACGAGCGGGCGCAGGTGGTGCAGGAGTACGAGAGCGGCAAGGCCGTCCCCGTCCAGGCCGTGCTCGCCAAGATGGAGCGCGCGCTCGAGGTCAAGCTCCGCGGCAAGGCGGTCGGCGCGCCGGCCGCGCCCGCCGGCGCCAAGTGAATCCTTCGTGGCCGGAATCGCACCTCCGATCCCTCCTAGTTAGGCGTTGATCCGTTTGTGAATGTGCAGTTTGTTTGTGTTCTTGGCTTAATTTTGGGGGGAAACTATGATATGCTAACTGGCTCAGACGCATGTGAAGTGATGATGGCTAGAAATTGAATTTCCGTTGGATTTGTGAACACATAGTTTAGTTGAAGCGCTTTTCGATCCGGTTGTGTTCAATCGTCGTTGTGCTCTGCTTCTAGTTGTGACTAGCTTTGTTCTCTGCTCATATTTCANTGATTGATCCAAAAA]
[+] EMBL AU165258 [CGGANCCCGNCGGGGCTGGGGCGCGTTGGGCGCGAAGGTGCGCGGCGCGATCCAGAAGGCCCGGGTGGCGAAGGGGTGGAGCCAGCGGAGCTCGCCAAGCGCATCAACGAGCGGGCGCAGGTGGTGCAGGAGTACGAGAGCGGCAAGGCCGTCCCCGTCCAGGCCGTGCTCGCCAAGATGGAGCGCGCGCTCGAGGTCAAGCTCCGCGGCAAGGCGGTCGGCGCGCCGGCCGCGCCCGCCGGCGCCAAGTGAATCCTTCGTGGCCGGAATCGCACCTCCGATCCCTCCTAGTTAGGCGTTGATCCGTTTGTGAATGTGCAGTTTGTTTGTGTTCTTGGCTTAATTTTGGGGGGAAACTATGATATGCTAACTGGCTCAGACGCATGTGAAGTGATGATGGCTAGAAATTGAATTTCCGTTGGATTTGTGAACACATAGTTTAGTTGAAGCGCTTTTCGATCCGGTTGTGTTCAATCGTCGTTGTGCTCTGCTTCTAGTTGTGACTAGCTTTGTTCTCTGCTCATATTTCANTGATTGATCCAAAAA]
consensusID : consensus_15453#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 443 fasta sequence
[AAATCATCGTCCCTAAATTGGACAAAATTACACTGAACTACGCAGATCCATCGTTGCGACCACGCAGAAGATCTCCGTGCTCGGGTGGCGCGGCGGGATGGCGTCCTCATCGGCGGCGGCGGCGACGTACCGGTGCGCGGAGTGCGAGAGCGGCAAGGCCGTCCCCGTCCAGGCCGTGCTCGCCAAGATGGAGCGCGCGCTCGAGGTCAAGCTCCGCGGCAAGGCGGTCGGCGCGCCGGCCGCGCCCGCCGGCGCCAAGTGAATCCTTCGTGGCCGGAATCGCACCTCCGATCCCTCCTAGTTAGGCGTTGATCCGTTTGTGAATGTGCAGTTTGTTTGTGTTCTTGGCTTAATTTTGGGGGGAAACTATGATATGCTAACTGGCTCAGACGCATGTGAAGTGATGATGGCTAGAAATTGAATTTCCGTTGGATTTGTGACAA]
[+] EMBL AU069394 [AAATCATCGTCCCTAAATTGGACAAAATTACACTGAACTACGCAGATCCATCGTTGCGACCACGCAGAAGATCTCCGTGCTCGGGTGGCGCGGCGGGATGGCGTCCTCATCGGCGGCGGCGGCGACGTACCGGTGCGCGGAGTGCGAGAGCGGCAAGGCCGTCCCCGTCCAGGCCGTGCTCGCCAAGATGGAGCGCGCGCTCGAGGTCAAGCTCCGCGGCAAGGCGGTCGGCGCGCCGGCCGCGCCCGCCGGCGCCAAGTGAATCCTTCGTGGCCGGAATCGCACCTCCGATCCCTCCTAGTTAGGCGTTGATCCGTTTGTGAATGTGCAGTTTGTTTGTGTTCTTGGCTTAATTTTGGGGGGAAACTATGATATGCTAACTGGCTCAGACGCATGTGAAGTGATGATGGCTAGAAATTGAATTTCCGTTGGATTTGTGACAA]
[+] EMBL AU069529 [AAATCATCGTCCCTAAATTGGACAAAATTACACTGAACTACGCAGATCCATCGTTGCGACCACGCAGAAGATCTCCGTGCTCGGGTGGCGCNGCGGGATGGCGTCCTCATCGGCGGCGGCGGCGACGTACCGGTGCGCGGAGTGCGAGANCGGCAAGGCCGTCCCCGTCCAGGCCGTGCTCGCCAAGATGGAGCGCGCGCTCGAGGTCAAGCTCCGCGGCAAGGCGGTCGGCGCGNCGGCCGNGCCCGGCGGCGCCAAGTGAATCCTTCGTGGNCGGAATCGCACCTCCGATCCCTCCTAGTTAGGCGTTGATCCGTTTGTGAATGTGCAGTTTGTNTGTGTTCTTGGCTTA ]
consensusID : consensus_15453#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 348 fasta sequence
[TGGAAGAGAAGGGAGGAGAGGGGAGAGAGCAATGCCGACGGGGAGGTTGAGCGGCAACATACGAGGCTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCGACGCGGACCTTAAGTCGACGAGGGCGGTGAACCAGGCGATGCGGACGGGGGCGCGGTGGAGACGTGCGAAGGCGCACGGGCACGACAAGCGCGCGGGGGCGCGCGCCGGCGGAANTGGACGAGTCGACGAGCCGCGGGCTGGGCGCTGGCCGGAGGTGCGCGGCGCGATCCAGAAGGCCGGTGGCGAAGGGGTGAGCAGGCCGACTCGCAAGCGCATCAACGAGCGGCCAGGTGGTCAGAGTACGAAG]
[+] EMBL OS0359A [TGGAAGAGAAGGGAGGAGAGGGGAGAGAGCAATGCCGACGGGGAGGTTGAGCGGCAACATACGAGGCTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCGACGCGGACCTTAAGTCGACGAGGGCGGTGAACCAGGCGATGCGGACGGGGGCGCGGTGGAGACGTGCGAAGGCGCACGGGCACGACAAGCGCGCGGGGGCGCGCGCCGGCGGAANTGGACGAGTCGACGAGCCGCGGGCTGGGCGCTGGCCGGAGGTGCGCGGCGCGATCCAGAAGGCCGGTGGCGAAGGGGTGAGCAGGCCGACTCGCAAGCGCATCAACGAGCGGCCAGGTGGTCAGAGTACGAAG]
consensusID : consensus_15453#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 315 fasta sequence
[TGGAAGAGAGGGAGGAGAGGGGAGAGAGCAATGCCGACGGGGAGGTTGAGCGGCAACATCACGCAGGACTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCGAACGTACTGGNACCTTAAGTCGACGAGGGCGGTGAACCAGGCGATGCGGACGGGGGCGCCGGTGGAGACGGTGCGGAAGGCGGCACGGGCACGAACAAGGCGGCGGCGGNNGCGNCGNCGCCGNGCGGNAAGTNTGACGAGTCGACGNAGCCGGCGNGGCTTGTGGTCGCGTGGGCNNANAGGTGCGNGGCGCGATTCCAGAAGGNCCTTGTA]
[+] EMBL OSC03152 [TGGAAGAGAGGGAGGAGAGGGGAGAGAGCAATGCCGACGGGGAGGTTGAGCGGCAACATCACGCAGGACTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCGAACGTACTGGNACCTTAAGTCGACGAGGGCGGTGAACCAGGCGATGCGGACGGGGGCGCCGGTGGAGACGGTGCGGAAGGCGGCACGGGCACGAACAAGGCGGCGGCGGNNGCGNCGNCGCCGNGCGGNAAGTNTGACGAGTCGACGNAGCCGGCGNGGCTTGTGGTCGCGTGGGCNNANAGGTGCGNGGCGCGATTCCAGAAGGNCCTTGTA]
[+] EMBL AU069658 [ GAGGGGAGANAGCAATGCCGACGGGGAGGTTGAGCGGCAACATCACGCAGGACTGGGNGCCGGTGGTGCTGCGGCGGACGAAGCCGAANGTNC GG ACCTTAANTCGACGAGGGCGGTGAACCAGGCGATGCGGACGGGGGCGCCGGTGGAGACGGTNCGGAAGGCGGCACNGGCACGAACAANGCGG ]
consensusID : consensus_15453#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 311 fasta sequence
[AGCGTGGAAGAGAGGGAGGAGAGGGGAGAGAGCAATGCCGACGGGGAGGTTGAGCGGCAACATCACGCAGGACTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCGAACGTACGGTACCTTAAGTNGACGAGGGCGNTGNACCAGGCGATGCGGACGNGGGCGCCGGTGGAGACGTTGCGGAAGGCGTCACGNGCACGAACAAGTNCGACGGNGNTGGCGTACGGCGACCNCGCGGAANCTGAGACGAGTNGACGGAGNCNNCGAGNCTTTTGTACGCGTCNNCGNNNNGATTNCGCGANGCNNTCCANAA]
[+] EMBL OSC19861 [AGCGTGGAAGAGAGGGAGGAGAGGGGAGAGAGCAATGCCGACGGGGAGGTTGAGCGGCAACATCACGCAGGACTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCGAACGTACGGTACCTTAAGTNGACGAGGGCGNTGNACCAGGCGATGCGGACGNGGGCGCCGGTGGAGACGTTGCGGAAGGCGTCACGNGCACGAACAAGTNCGACGGNGNTGGCGTACGGCGACCNCGCGGAANCTGAGACGAGTNGACGGAGNCNNCGAGNCTTTTGTACGCGTCNNCGNNNNGATTNCGCGANGCNNTCCANAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15453#5 -------------------------------------------------------TGGAA 5
consensus_15453#6 ---------------------------------------------------AGCGTGGAA 9
consensus_15453#4 -------------------------------------------------------TGGAA 5
consensus_15453#0 ---------------------------------AATCACATACACAAGAAGAGCGTGGAA 27
consensus_15453#2 -------------------------------------------------CGGANCCCGNC 11
consensus_15453#3 ------------------------------------------AAATCATCGTCCCTAAAT 18
consensus_15453#1 CAGTCCAACGCGGCTTCGCTTCCGGTGCCGTGTCCTCCCTAGAAATCATCGTCCCTAAAT 60
consensus_15453#5 GAGA-GGGAGGAGAGGGGAGAGAGCAATGCCGACGGGGAGGTT-----GAGCGGCAACAT 59
consensus_15453#6 GAGA-GGGAGGAGAGGGGAGAGAGCAATGCCGACGGGGAGGTT-----GAGCGGCAACAT 63
consensus_15453#4 GAGAAGGGAGGAGAGGGGAGAGAGCAATGCCGACGGGGAGGTT-----GAGCGGCAACAT 60
consensus_15453#0 GAGA-GGGAGGAGAGGGGAGAGAGCAATGCCGACGGGGAGGTT-----GAGCGGCAACAT 81
consensus_15453#2 GGGGCTGGGGCGCGTTGGGC-GCGAAGGTGCG-CGGCGCGATC---CAGAAGGCCCGGGT 66
consensus_15453#3 TGGACAAAATTACACTGAACTACGCAGATCCATCGTTGCGACCACGCAGAAGATCTCCGT 78
consensus_15453#1 TGGACAAAATTACACTGAACTACGCAGATCCATCGTTGCGACCACGCAGAAGATCTCCGT 120
* * * * * ** * * ** * *
consensus_15453#5 CACGCAGGACTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCGA--ACGTACTGGNACCT 117
consensus_15453#6 CACGCAGGACTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCGA--ACGTAC-GGTACCT 120
consensus_15453#4 ---ACGAGGCTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCGA---CGC----GGACCT 110
consensus_15453#0 CACGCAGGACTGGGAGCCGGTGGTGCTGCGGCGGACGAAGCCGA--AGGCGG-CGGACCT 138
consensus_15453#2 GGCGAAGGGGTGGAGCCAGCGGAGCTCGCCAAGCGCATCAACGAGCGGGCGCAGGTGGTG 126
consensus_15453#3 GCTCGGGTGGCGCGGCGGGATGGCGTCCTCATCGGCGGCGGCGGCGACGTACCGGTG-CG 137
consensus_15453#1 GCTCGGGTGGCGCGGCGGGATGGCGTCCTCATCGGCGGCGGCGGCGACGTACCGGTGCGC 180
* * * * ** * *
consensus_15453#5 TAAGTCGACGAGGGCGGTGAACCAGGCGATGC---GGACGGGGGCGCC--GG-------T 165
consensus_15453#6 TAAGTNGACGAGGGCGNTGNACCAGGCGATGC---GGACGNGGGCGCC--GG-------T 168
consensus_15453#4 TAAGTCGACGAGGGCGGTGAACCAGGCGATGC---GGACGGGGGCGC---GG-------T 157
consensus_15453#0 TAAGTCGACGAGGGCGGTGAACCAGGCGATGC---GGACGGGGGCGCC--GG-------T 186
consensus_15453#2 CAGGAGTACGAGAGCGGCAAGGCCGTCCCCGTCCAGGCCGTGCTCGCCAAGA-------T 179
consensus_15453#3 C-GGAGTGCGAGAGCGGCAAGGCCGTCCCCGTCCAGGCCGTGCTCGCCAAGA-------T 189
consensus_15453#1 GGAGTGGGGGGCGGACCTGAACCTGACGGCGGCGCAGCTATACCCGGAGGGGGTCTACTT 240
* * * * * * * * ** * *
consensus_15453#5 GGAG-ACGGTGCGGAAG---------GCGGCA-CGGGCACGAA----CAAG-GCGGCGGC 209
consensus_15453#6 GGAG-ACGTTGCGGAAG---------GCGTCA-CGNGCACGAA----CAAGTNCGACGGN 213
consensus_15453#4 GGAG-ACG-TGCGAAGGCGCACGGGCACGACA-AGCGCGCGGG----GGCGCGCGCCGGC 210
consensus_15453#0 GGAG-ACGGTGCGGAAG---------GCGGCAGCGGGCACGAA----CAAG-GCGGCGGC 231
consensus_15453#2 GGAGCGCGCGCTCGAGGTCAAGCTCCGCGGCAAGGCGGTCGGCGCGCCGGCCGCGCCCGC 239
consensus_15453#3 GGAGCGCGCGCTCGAGGTCAAGCTCCGCGGCAAGGCGGTCGGCGCGCCGGCCGCGCCCGC 249
consensus_15453#1 CGAGGCCGGCAACAAGGGGACGCTCTCCTTCT-CGTGGGTGGACGAGTCGCGGCTGCGGT 299
*** ** * * * * * * * * * *
consensus_15453#5 -GGNNGCGN-CGN---CG-CCGNGCGGNAAGTNTG---ACGAGTCGACGNAGC-CGGCGN 259
consensus_15453#6 -GNTGGCGTACGG---CGACCNCGCGGAANCTGAG---ACGAGTNGACGGAGN-CNNCGA 265
consensus_15453#4 -GGAANTGGACGAGT-CGACGAGCCGCGGGCTGGGC--GCTGGCCGGAGGTGCGCGGCGC 266
consensus_15453#0 -GGGGGCGG-CGG---CGCCCGCGCGGAAGCTGGA----CGAGTCGACGGAGC-CGGCGG 281
consensus_15453#2 CGGCGCCAAGTGAATCCTTCGTGGCCGGAATCGCACCTCCGATCCCTCCTAGTTAGGCGT 299
consensus_15453#3 CGGCGCCAAGTGAATCCTTCGTGGCCGGAATCGCACCTCCGATCCCTCCTAGTTAGGCGT 309
consensus_15453#1 TCGCGCCGGAGGACAAGATCCGCCCCTTCTTCGAGACGCTCAACTACTGGGGGATCCAGC 359
* * * * *
consensus_15453#5 -GGCTTGTGGTCGCGTGGGCNNANA-GGT-GCGN----GGCGCGATTCCAGAAGGNCCTT 312
consensus_15453#6 -GNCTTTTGTACGCGTCNNCGNNNN-GATTNCGC----GANGCNNT-CCANAA------- 311
consensus_15453#4 -GATCCAGAAGGCCGGTGGCGAAGG-GGT-GAGC----AGGCCGACTCGCAAGCGCATCA 319
consensus_15453#0 -GGCT--GGGGCGCGTGGGCGCGGA-GGT-GCGC----GGCGCGAT-CCAGAAGGCCCGG 331
consensus_15453#2 TGATCCGTTTGTGAATGTGCAGTTT-GTTTGTGTTCTTGGCTTAATTTTGGGGGGAAACT 358
consensus_15453#3 TGATCCGTTTGTGAATGTGCAGTTT-GTTTGTGTTCTTGGCTTAATTTTGGGGGGAAACT 368
consensus_15453#1 GGAAGCGCACCCGCATCAGCTGCGACGCCTGCGGCCGCCTCCTCGGCTACGTCTACGACG 419
* * * *
consensus_15453#5 GTA--------------------------------------------------------- 315
consensus_15453#6 ------------------------------------------------------------
consensus_15453#4 ACGAGCGGCCAGGTGGTCAGAGTACGAAG------------------------------- 348
consensus_15453#0 GTGGCGAAGGGGTGGAGCCAGGCGGAGCTCGCCAAGCGCATCAACGAGCGGGCGCAGGTG 391
consensus_15453#2 ATGATATGCTAACTGGCTCAGACGCATGTGAAGTGATGATGGCTAGAAATTGAATTTCCG 418
consensus_15453#3 ATGATATGCTAACTGGCTCAGACGCATGTGAAGTGATGATGGCTAGAAATTGAATTTCCG 428
consensus_15453#1 ACGGGCCGCCGGCCATGGACGGCACCGGCCAGTTCGGGATGGGCCCCAGCCAGGTCATCC 479
consensus_15453#5 ------------------------------------------------------------
consensus_15453#6 ------------------------------------------------------------
consensus_15453#4 ------------------------------------------------------------
consensus_15453#0 GTGCAGGAGTACGAGAGCGGCAAGGCCGTCCCCGTCCAGGCCGTGCTCGCCAAGATGGAG 451
consensus_15453#2 TTGGATTTGTGAACACATAGTTTAGTTGAAGCGCTTTTCGATCCGGTTGTGTTCAATCGT 478
consensus_15453#3 TTGGATTTGTGACAA--------------------------------------------- 443
consensus_15453#1 CTCGCCGGCCGAGGTACCGGGTCAAGACCAAGGCCGTCACCGTGGTCAATCCTCCGGCTA 539
consensus_15453#5 ------------------------------------------------------------
consensus_15453#6 ------------------------------------------------------------
consensus_15453#4 ------------------------------------------------------------
consensus_15453#0 CGCGCGCTCGAGGTCAAGCTCCGCGGCAAGGCGGTCGGCGCGCCGGCCGCGCCCGCCGGC 511
consensus_15453#2 CGTTGTGCTCTGCTTCTAGTTGTGACTAGCTTTGTTCTCTGCTCATATTTCANTGATTGA 538
consensus_15453#3 ------------------------------------------------------------
consensus_15453#1 CCGCACCGTACAGATGAGATGAAACCTTGTACATCAACATCGTAGTAGCGTTCGGTGTTA 599
consensus_15453#5 ------------------------------------------------------------
consensus_15453#6 ------------------------------------------------------------
consensus_15453#4 ------------------------------------------------------------
consensus_15453#0 GCCAAGTGAATCCTTCGTGGCCGGAATCGCACCTCCGATCCCTCCTAGTTAGGCGTTGAT 571
consensus_15453#2 TCCAAAAA---------------------------------------------------- 546
consensus_15453#3 ------------------------------------------------------------
consensus_15453#1 CAAGTAGGACATGTAAAACGTATTCCATTGTGATCTTGGTTCGCCGTTGTTGCAAATAAA 659
consensus_15453#5 ------------------------------------------------------------
consensus_15453#6 ------------------------------------------------------------
consensus_15453#4 ------------------------------------------------------------
consensus_15453#0 CCGTTTGTGAATGTGCAGTTTGTTTGTGTTCTTGGCTTAATTTTGGGGGGAAACTATGAT 631
consensus_15453#2 ------------------------------------------------------------
consensus_15453#3 ------------------------------------------------------------
consensus_15453#1 TAAATTGTAGTAGTACTA------------------------------------------ 677
consensus_15453#5 ------------------------------------------------------------
consensus_15453#6 ------------------------------------------------------------
consensus_15453#4 ------------------------------------------------------------
consensus_15453#0 ATGCTAACTGGCTCAGACGCATGTGAAGTGATGATGGCTAGAAATTGAATTTCCGTTGGA 691
consensus_15453#2 ------------------------------------------------------------
consensus_15453#3 ------------------------------------------------------------
consensus_15453#1 ------------------------------------------------------------
consensus_15453#5 ------------------------------------------------------------
consensus_15453#6 ------------------------------------------------------------
consensus_15453#4 ------------------------------------------------------------
consensus_15453#0 TTTGTGAACACATAGTTTAGTTGAAGCGCTTTTCGATCCGGTTGTGTTCAATCGTCGTTG 751
consensus_15453#2 ------------------------------------------------------------
consensus_15453#3 ------------------------------------------------------------
consensus_15453#1 ------------------------------------------------------------
consensus_15453#5 --------------------------------------
consensus_15453#6 --------------------------------------
consensus_15453#4 --------------------------------------
consensus_15453#0 TGCTCTGCTTCTAAAAAAAAAAAAAAAAAAAAAAAAAA 789
consensus_15453#2 --------------------------------------
consensus_15453#3 --------------------------------------
consensus_15453#1 --------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||