These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15456#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 1217 fasta sequence [TGAATTACTAGAGTATCTTCCCCTTCCTTCCCTTGGGCCTTGGCGTAAAAGAAAGAGAAATCTCCATTCTCGTCGTCTCCTCAGCTGCTTGCGCCAAGACGAGTCGCGGCTCAACAGGGGGAGGGGCGGCGATCTCCATCCATCCGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTGGAAAATGCTAAACCTTATTAAGATAAAGGGTCAAAAGAAGGAAGATGCAGCCAATGCAAATGGAAAGCCTCCTGCCAAAAAGCAAAGTCCAGGGGAGTTGCGTCTTCACAAAGATATTGCTGAACTTAACCTTCCTAAGTCGACTAGAATTTCTTTTCCT-AATGGCAAGGATGATTTGATGAACTTTGAAGTTACTATTCGACCTGATGAGGGATACTATGTAGGTGGTAAATTTATTTTTACTTTCCAAGTTCCTCCTGCCTATCCTCATGAACCACCCAAAGTCAAGTGCAAGACTAAGGTCTATCATCCCAATATTGACTTGGAGGGAAATGTCTGCCTTAACATTCTGCGTGAAGATTGGAAGCCTGTCCTGAATGTCAACA-CGATT-GTATATGGCTTGAATCTTCTTTTCTCACAA-CCTAATGATGAGGACCCTCTAAATCATGAGGCGGCAGCAGTTCTTCGAGACA-ACCCAGAAAAGTTTGAGAGAAATGTCCAGAGGGCAATGGCTGGAGGCTATGTTGGTGAAACCCACTTCCCTAGATGTATGTAAGGCCTGAAGATGGTGATCGGTACCTGACTTATCTGCTGCTGCCATTTCTCCTACCAATGCACTATGGTAAAAGCAGTATATGTAACCAAGAAGGAACTTCTCTGTTATGTAACAACAGCAGTTGCTAGAAAGTAAGTTAGTGAGGCAATTGAACTCACGTTCATAACCCGCAATCCGAAGACTCTGGGTTAACCTGTTGTGGCAAATGTTCTCTTTTGGCCCTCGCGCGCATCTCAGTCATTCTGATTCATACCAGTTTCTGAGATGCTTTTGTATAATGCCAGCTAGAGAAAATGCTGAACAGTATGTGTGTGCTGCACTTACTGCCTGTTATGACTTATGGCTACCAGGAAGTAAGAACAAGTTCACTAACATTGCTTAATGTAACATGCTACCTTGGGTAGTTGTGTTGTTCTTTTTTCCAAGCTCTGTAACTGGAAAAGTCTTCTCCACCTAAATGTTCTGAAAGGCATTTCATGGCTA] [+] EMBL C97077 [TGAATTACTAGAGTATCTTCCCCTTCCTTCCCTTGGGCCTTGGCGTAAAAGAAAGAGAAATCTCCATTCTCGTCGTCTCCTCAGCTGCTTGCGCCAAGACGAGTCGCGGCTCAACAGGGGGAGGGGCGGCGATCTCCATCCATCCGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTGGAAAATGCTAAACCTTATTAAGATAAAGGGTCAAAAGAAGGAAGATGCAGCCAATGCAAATGGAAAGCCTCCTGCCAAAAAGCAAAGTCCAGGGGAGTTGCGTCTTCACAAAGATATTGCTGAACTTAACCTTCCTAAGTCGNCTAGANTTTTTTTTCCTAAATGGCAAGGATGATTTGATGAACTTTGAAGTTACTATTCGACCTGATGAGGGATACT ] [+] EMBL AK070541 [ GGCGTAAAAGAAAGAGAAATCTCCATTCTCGTCGTCTCCTCAGCTGCTTGCGCCAAGACGAGTCGCGGCTCAACAGGGGGAGGGGCGGCGATCTCCATCCATCCGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTGGAAAATGCTAAACCTTATTAAGATAAAGGGTCAAAAGAAGGAAGATGCAGCCAATGCAAATGGAAAGCCTCCTGCCAAAAAGCAAAGTCCAGGGGAGTTGCGTCTTCACAAAGATATTGCTGAACTTAAACTTCCTAAGTCGACTAGAATTTCTTTTCCT AATGGCAAGGATGATTTGATGAACTTTGAAGTTACTATTCGACCTGATGAGGGATACTATGTAGGTGGTAAATTTATTTTTACTTTCCAAGTTCCTCCTGCCTATCCTCATGAACCACCCAAAGTCAAGTGCAAGACTAAGGTCTATCATCCCAATATTGACTTGGAGGGAAATGTCTGCCTTAACATTCTGCGTGAAGATTGGAAGCCTGTCCTGAATGTCAACA CGATT GTATATGGCTTGAATCTTCTTTTCTCACAA CCTAATGATGAGGACCCTCTAAATCATGAGGCGGCAGCAGTTCTTCGAGACA ACCCAGAAAAGTTTGAGAGAAATGTCCAGAGGGCAATGGCTGGAGGCTATGTTGGTGAAACCCACTTCCCTAGATGTATGTAAGGCCTGAAGATGGTGATCGGTACCTGACTTATCTGCTGCTGCCATTTCTCCTACCAATGCACTATGGTAAAAGCAGTATATGTAACCAAGAAGGAACTTCTCTGTTATGTAACAACAGCAGTTGCTAGAAAGTAAGTTAGTGAGGCAATTGAACTCACGTTCATAACCCGCAATCCGAAGACTCTGGGTTAACCTGTTGTGGCAAATGTTCTCTTTTGGCCCTCGCGCGCATCTCAGTCATTCTGATTCATACCAGTTTCTGAGATGCTTTTGTATAATGCCAGCTAGAGAAAATGCTGAACAGTATGTGTGTGCTGCACTTACTGCCTGTTATGACTTATGGCTACCAGGAAGTAAGAACAAGTTCACTAACATTGCTTAATGTAACATGCTACCTTGGGTAGTTGTGTTGTTCTTTTTTCCAAGCTCTGTAACTGGAAAAGTCTTCTCCACCTAAATGTTCTGAAAGGCATTTCATGGCTA] [+] EMBL CF336852 [ AGAGAAATCTCCATTCTCGTCGTCTCCTCAGCTGCTTGCGCCAAGACGAGTCGCGGCTCAACAGGGGGAGGGGCGGCGATCTCCATCCATCCGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTGGAAAATGCTAAACCTTATTAAGATAAAGGGTCAAAAGAAGGAAGATGCAGCCAATGCAAATGGAAAGCCTCCTGCCAAAAAGCAAAGTCCAGGGGAGTTGCGTCTTCACAAAGATATTGCTGAACTTAACCTTCCTAAGTCGACTAGAATTTCTTTTCCT AATGGCAAGGATGATTTGATGAACTTTGAAGTTACTATCCGACCTGATGAGGGATACTATGTAGGTGGTAAATTTATTTTTACTTTCCAAGTTCCTCCTGCCTATCCTCATGAACCACCCAAAGTCAAGTGCAAGACTAAGGTCTATCATCCCAATATTGACTTGGAGGGAAATGTCTGCCTT ACATTCTGCGTGAAGATTGGAAGCCTGT ] [+] EMBL CF306697 [ TCCATTCTCGTCGTCTCCTCAGCTGCTTGCGCCAAGACGAGTCGCGGCTCAACAGGGGGAGGGGCGGCGATCTCCATCCATCCGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTGGAAAATGCTAAACCTTATTAAGATAAAGGGTCAAAAGAAGGAAGATGCAGCCAATGCAAATGGAAAGCCTCCTGCCAAAAAGCAAAGTCCAGGGGAGTTGCGTCTTCACAAAGATATTGCTGAACTTAACCTTCCTAAGTCGACTAGAATTTCTTTTCCT AATGGCAAGGATGATTTGATGAACTTTGAAGTTACTATTCGACCTGATGAGGGATACTATGTAGGTGGTAAATTTATTTTTACTTTCCAAGTTCCTCCTGCCTATCCTCATGAACCACCCAAAGTCAAGTGCAAGACTAAGGTCTATCATCCCAATATTGACTTGGAGGGAAATGTCTGCCTTAACATTCTGCGTGAAGATTGGAAGCCTGTCCTGAATGTCAACA CGATT GTATATGGCTTGAATCTTCTTTTCTCACAA ] [+] EMBL OSC28471 [ ATTCTCGTCGTCTCCTCAGCTGCTTGCGCCAAGACGAGTCGCGGCTCAACAGGGGGAGGGGCGGCGATCTCCATCCATCCGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTGGAAAATGCTAAACCTTATTAAGATAAAGGGTCAAAAGAAGGAAGATGCAGCCAATGCAAATGGAAAGCCTCCTGCCAAAAAGCAAAGTCCAGGGGAGTTGCGTCTTCACAAAGATATTGCTGAACTTAACCTTCCTAAGTCGACTAGAATTTCTTTTCCT AATGGCAAGGATGATTTGATGAACTTTGAAGTTACTATTCGACCTGATGAGGGATACTATGTAGGTGGTAAATTTATTTTTACTTTCCAAGTTCCTCCTGCCTATCCTCATGAACCACCCAAgt ] [+] EMBL OS0273A [ TTCTCGTCGTCTCCTCAGCTGCTTNCGCCAAGACGAGTCGCGGCTCAACAGGGGGAGGGGCGGCGATCTCCATCCATCCGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTGGAAAATGCTAAACCTTATTAAGATAAAGGGTCAAAAGAAGGAAGATGCAGCCAATGCAAATGGAAAGCCTCCTGCCAAAAAGCAAAGTCCAGGGGAGTTGCGTCTTCACAAAGATATTGCTGAACTTAACCTTCCTAAGTCGACTAGAATTTCTTTTCCT AATGGCAAGGATGATTTGATGAACTTTGAAGTTACTATTCGACCTGATGAGGGATACTA ] [+] EMBL AK104511 [ CTCGTCGTCTCCTCAGCTGCTTGCGCCAAGACGAGTCGCGGCTCAACAGGGGGAGGGGCGGCGATCTCCATCCATCCGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTGGAAAATGCTAAACCTTATTAAGATAAAGGGTCAAAAGAAGGAAGATGCAGCCAATGCAAATGGAAAGCCTCCTGCCAAAAAGCAAAGTCCAGGGGAGTTGCGTCTTCACAAAGATATTGCTGAACTTAACCTTCCTAAGTCGACTAGAATTTCTTTTCCT AATGGCAAGGATGATTTGATGAACTTTGAAGTTACTATTCGACCTGATGAGGGATACTATTTAGGTGGTAAATTTATTTTTACTTTCCAAGTTCCTCCTGCCTATCCTCATGAACCACCCAAAGTCAAGTGCAAGACTAAGGTCTATCATCCCAATATTGACTTGGAGGGAAATGTCTGCCTTAACATTCTGCGTGAAGATTGGAAGCCTGTCCTGAATGTCAACA CGATT GTATATGGCTTGAATCTTCTTTTCTCACAA CCTAATGATGAGGACCCTCTAAATCATGAGGCGGCAGCAGTTCTTCGAGACA ACCCAGAAAAGTTTGAGAGAAATGTCCAGAGGGCAATGGCTGGAGGCTATGTTGGTGAAACCCACTTCCCTAGATGTATGTAAGGCCTGAAGATGGTGATCGGTACCTGACTTATCTGCTGCTGCCATTTCTCCTACCAATGCACTATGGTAAAAGCAGTATATGTAACCAAGAAGGAACTTCTCTGTTATGTAACAACAGCAGTTGCTAGAAAGTAAGTTAGTGAGGCAATTGAACTCACGTTCATAACCCGCAATCCGAAGACTCTGGGTTAACCTGTTGTGGCAAATGTTCTCTTTTGGCCCTCGCGCGCATCTCAGTCATTCTGATTCATACCAGTTTCTGAGATGCTTTTGTATAATGCCAGCTAGAGAAAATGCTGAACAGTATGTGTGTGCTGCACTTACTGCCTGTTATGACTTATGGCTACCAGGAAGTAAGAACAAGTTCACTAACATTGCTTAATGTAACATGCTACCTTGGGTAGTTGTGTTGTTCTTTTTTCCAAGCTCTGTAACTGGAAAAGTC ] [+] EMBL CB680393 [ CGTCGCCCCCTCAGCTGCTTGCGCCAAGACGAGTCGCGGCTCAACAGGGGGAGGGGCGGCGATCTCCATCCATCCGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTGGAAAATGCTAAACCTTATTAAGATAAAGGGTCAAAAGAAGGAAGATGCAGCCAATGCAAATGGAAAGCCTCCTGCCAAAAAGCAAAGTCCAGGGGAGTTGCGTCTTCACAAAGATATTGCTGAACTTAACCTTCCTAAGTCGACTAGAATTTCTTTTCCT AATGGCAAGGATGATTTGATGAACTTTGAAGTTACTATTCGACCTGATGAGGGATACTATGTAGGTGGTAAATTTATTTTTACTTTCCAAGTTCCTCCTGCCTATCCTCATGAACCACCCAAAGTCAAGTGCAAGACTAAGGTCTATCATCCCAATATTGACTTGGAGGGAAATGTCTGCCTTAACATTCTGCGTGAAGATTGGAAGCCTGTCCTGAATGTCAACA CGATT GTATATGGCTTGAATCTTCTTTTCTCACAA CCTAATGATGAGGACCCTCTAAATCATGAGGCGGCAGCAGTTCTTCGAGACA ACCCAGAAAAGTTTGAGAGAAATGTCCAGAGGGCAATGGCTGGAGGCTATGTTGGTGAAACCCACTTCCCTAGATGTATGTAAGGCCTGAAGATGGTGATCGGTACCTGACTTATCTGCTGCTGCCATTTCTCCTACCAATGCACTATGGTAAAAGCAGTATATGTAACCAAGAAGGAACTTCTCTGTTATGTAACAACAGCAGTTGCTAAAAAGTAAGTTAGTGAGGCAATTGAAC ] [+] EMBL C27441 [ GTCGTCTCCTCAGCTGCTTGCGCCAAGACGAGTCGCGGCTCAACAGGGGGAGGGGCGGCGATCTCCATCCATCCGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTGGAAAATGCTAAACCTTATTAAGATAAAGGGTCAAAAGAAGGAAGATGCAGCCAATGCAAATGGAAAGCCTCCTGCCAAAAAGCAAAGTCCAGGGGAGTTGCGTCTTCACAAAGATATTGCTGAACTTAACCTTCCTAAGTNGACTAGAATTTTTTTTCCT AATGGCA ] [+] EMBL AK104158 [ GCTGCTTGCGCCAAGACGAGTCGCGGCTCAACAGGGGGAGGGGCGGCGATCTCCATCCATCCGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTGGAAAATGCTAAACCTTATTAAGATAAAGGGTCAAAAGAAGGAAGATGCAGCCAATGCAAATGGAAAGCCTCCTGCCAAAAAGCAAAGTCCAGGGGAGTTGCGTCTTCATTAAGATATTGCTGAACTTAACCTTCCTAAGTCGACTAGAATTTCTTTTCCT AATGGCAAGGATGATTTGATGAACTTTGAAGTTACTATTCGACCTGATGAGGGATACTATGTAGGTGGTAAATTTATTTTTACTTTCCAAGTTCCTCCTGCCTATCCTCATGAACCACCCAAAGTCAAGTGCAAGACTAAGGTCTATCATCCCAATATTGACTTGGAGGGAAATGTCTGCCTTAACATTCTGCGTGAAGATTGGAAGCCTGTCCTGAATGTCAACA CGATT GTATATGGCTTGAATCTTCTTTTCTCACAA CCTAATGATGAGGACCCTCTAAATCATGAGGCGGCAGCAGTTCTTCGAGACA ACCCAGAAAAGTTTGAGAGAAATGTCCAGAGGGCAATGGCTGGAGGCTATGTTGGTGAAACCCACTTCCCTAGATGTATGTAAGGCCTGAAGATGGTGATCGGTACCTGACTTATCTGCTGCTGCCATTTCTCCTACCAATGCACTATGGTAAAAGCAGTATATGTAACCAAGAAGGAACTTCTCTGTTATGTAACAACAGCAGTTGCTAGAAAGTAAGTTAGTGAGGCAATTGAACTCACGTTCATAACCCGCAATCCGAAGACTCTGGGTTAACCTGTTGTGGCAAATGTTCTCTTTTGGCCCTCGCGCGCATCTCAGTCATTCTGATTCATACCAGTTTCTGAGATGCTTTTGTATAATGCCAGCTAGAGAAAATGCTGAACAGTATGTGTGTGCTGCACTTACTGCCTGTTATGACTTATGGCTACCAGGAAGTAAGAACAA ] [+] EMBL AU068310 [ GCGCCAAGACGAGTCGCGGCTCAACAGGGGGAGGGGCGGCGATCTCCATCCATCCGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTGGAAAATGCTAAACCTTATTAAGATAAAGGGTCAAAAGAAGGAAGATGCAGCCAATGCAAATGGAAAGCCTCCTGCCAAAAAGCAAAGTCCAGGGGAGTTGCGTCTTCACAAAGATATTGCTGAACTTAACCTTCCTAAGTCGACTAGAATTTCTTTTCCT AATGGCAAGGATGATTTGATGAACTTTGAAGTTACTATTCGACCTGATGAGGGATACTATGTAGGTGGTAAATTTATTTTTACTTTCCAAGTTCCTCCTGCCTATCCTCATGAACCACCCAAAGTCAAGTGCAAGACTAAGGTCTATCATCCCAATATTGACTTGGAGGGAAATGTCTGCCTTAACATTCTGCGTGAAGATTGGAAGCCTGTCCTGAATGTCAACA CGATT GTATATGGCTTGAATCTTCTTTTCTC ] [+] EMBL C26526 [ GCGCCAAGACGAGTCGCGGCTCAACAGGGGGAGGGGCGGCGATCTCCATCCATCCGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTGGAAAATGCTAAACCTTATTAAGATAAAGGGTCAAAAGAAGGAAGATGCAGCCAATGCAAATGGAAAGCCTCCTGCCAAAAAGCAAAGTCCAGGGGAGTTGCGTCTTCACAAAGATATTGCTGAACTTAACCTTCCTAAGTCGACTAGAATTTCTTTTCCT AATGGCAAGGATGATTTGATGAACTTTGAAGTTACTATTCGACCTGATGAGGGATACTATGTAGGTGGTAAATTTATTTTTACTTTCCAAGTTCCTCCTGCCTATCCTCATGAACCACCCAAAGTCAAGTGCAAGNCTAAGG CTATCATCCCAATATTG CTTNGAGGG AATG CTTCCTTAACA ] [+] EMBL CF323596 [ gGGAAGATGCAGCCAATGCAAATGGAAAGCCTCCTGCCAAAAAGCAAAGTCCAGGGGAGTTGCGTCTTCACAAAGATATTGCTGAACTTAACCTTCCTAAGTCGACTAGAATTTCTTTTCCT AATGGCAAGGATGATTTGATGAACTTTGAAGTTACTAT ] [+] EMBL AU068309 [ TGCAAGACTAAGGTCTATCATCCCAATATTGACTTGGAGGGAAATGTCTGCCTTAACATTCTGCGTGAAGATTGGAAGCCTGTCCTGAATGTCAACA CGATT GTATATGGCTTGAATCTTCTTTTCTCACAA CCTAATGATGAGGACCCTCTAAATCATGAGGCGGCAGCAGTTCTTCGAGACA ACCCAGAAAAGTTTGAGAGAAATGTCCAGAGGGCAATGGCTGGAGGCTATGTTGGTGAAACCCACTTCCCTAGATGTATGTAAGGCCTGAAGATGGTGATCGGTACCTGACTTATCTGCTGCTGCCATTTCTCCTACCAATGCACTATGGTAAAAGCAGTATATGTAACCAAGAAGGAACTTCTCTGTTATGTAACAACAGCAGTTGCTAGAAAGTAAGTTAGTGAGGCAATTGAACTCACGTTCATAACCCGCAATCCGAAGACTCTGGGTTAACCTGTTGTGGCAAATGTTCTCTTTTGGCCCTCGCGCGCATCTCAGTCATTCTGATTCATACCAGTTTCTGAGATGCTTTTGTATAATGCCAGCTAGAGAAAATGCTGAACAGTATGTGTGTGCTGCACTTACTGCCTGTTATGACTTATGGCTACCAGGAAGTAAGAACAAGTTCACTAACATTGCTTAATGTAACATGCTACCTTGGGTAGTTGTGTTGTTCTTTTTTCAAAaa ] [-] EMBL BI305684 [ TCTGCCTTAACATTCTGCGTGAAGATTGGAAGCCTGTCCTGAATGTCAACA CGATT GTATATGGCTTGAATCTTCTTTTCTCACAA CCTAATGATGAGGACCCTCTAAATCATGAGGCGGCAGCAGTTCTTCGAGACA ACCCAGAAAAGTTTGAGAGAAATGTCCAGAGGGCAATGGCTGGAGGCTATGTTGGTGAAACCCACTTCCCTAGATGTATGTAAGGCCTGAAGATGGTGATCGGTACCTGACTTATCTGCTGCTGCCATTTCTCCTACCAATGCACTATGGTAAAAGCAGTATATGTAACCAAGAAGGAACTTCTCTGTTATGTAACAACAGCAGTTGCTAGAAAGTAAGTTAGTGAGGCAATTGGACTCACGTTCATAACCCGCAATCCGAAGACTCTGGGTTAACCTGTTGTGGCAAATGTTCTCTTTTGGCCCTCGCGCGCATCTCAGTCATTCTGATTCATACCAGTTTCTGAGATGCTTTTGTATAATGCCAGCTAGAGAAAATGCTGAACAGTATGTGTGTGCTGCACTTACTGCCTGTTATGACTTATGGCTACCAGGAAGTAAGAACAAGTTCACTAACATTGCTTAATGTAACATGCT ] [+] EMBL BI795649 [ GAAGGTCAACACCGATTGGTATAT GCTTGAATCTTCTTTTCTCAC A CCTAATGATGAGGACCCTCTAAATCATGA GC GCA CAGTTCTTCGAGACACACCCAGAAAAGTTTGAGAGAAATGTCCAGAGGCCAAT GCTGGAGGCTATGTTGGTGAAACCCACTTCCCTAGATGTATGTAA GCCTGAAGATGGTGATCGGTACCTGACTTATCTGCTGCTGCCATTTCTCCTACC ATGCACTATGGTAAAA CAGTATATGTAACCCAGAAGGAACTTCTCTGTTATGTAACAACA CAGTTGCTAGAAAGTAAGTTAGTGAGGC ATTGAACTCACGTTCATAACCCGCAATCCGAAGACTCTGGGTTAACCTGTTGTGGCAAATGTTCTCTTTTGGCCCTCGCGCGCATCTCAGTCATTCTGATTCATACCAGTTTCTGAGATGCTTTTGTATAATGCCAGCTAGAGAAAATGCTGAACAGTATGTGTGTGCTGCACTTACTGCCTGTTATGACTTATGGCTACCAGGAAGTAAGAACAAGTTCACTAAaaaaaaaa ] [-] EMBL BI306627 [ ATCTTCTTTTCTCACAACCCTAATGATGAGGACCCTCTAAATCATGAGGCGGCAGCAGTTCTTCGAGACA ACCCAGAAAAGTTTGAGAGAAATGTCCAGAGGGCAATGGCTGGAGGCTATGTTGGTGAAACCCACTTCCCTAGATGTATGTAAGGCCTGAAGATGGTGATCGGTACCTGACTTATCTGCTGCTGCCATTTCTCCTACCAATGCACTATGGTAAAAGCAGTATATGTAACCAAGAAGGAACTTCTCTGTTATGTAACAACAGCAGTTGCTAGAAAGTAAGTTAGTGAGGCAATTGGACTCACGTTCATAACCCGCAATCCGAAGACTCTGGGTTAACCTGTTGTGGCAAATGTTCTCTTTTGGCCCTCGCGCGCATCTCAGTCATTCTGATTCATACCAGTTTCTGAGATGCTTTTGTATAATGCCAGCTAGAGAAAATGCTGAACAGTATGTGTGTGCTGCACTTACTGCCTGTTATGACTTATGGCTACCAGGAAGTAAGAACAAGTTCACTAACATTGCTTAATGTAACATGCTACCTTGGGTAGTTGTGTTGTTCTTTTTTCCAAGCTCTGTAACTGGAAAGGTCT ] [+] EMBL CF196020 [ TTATCTGCTGCTGCCATTTCTCCTACCCATGCACTATGGTAAAAGCAGTATATGTAACCAAGAAGGAACTTCTCTGTTATGTAACAACAGCAGTTGCTAGAAAGTAAGTTAGTGAGGCAATTGAACTCACGTTCATAACCCGCAATCCGAAGACTCTGGGTTAACCTGTTGTGGCAAATGTTCTCTTTTGGCCCTCGCGCGCATCTCAGTCATTCTGATTCATACCAGTTTCTGAGATGCTTTTGTATAATGCCAGCTAGAGAAAATGCTGAACAGTATGTGTGTGCTGCACTTANNNCCTGTTATGACTTATGGCTACCAGGAAGTAAGAACAAGTTCACTAACATTGCTTAAaaaaaa ] consensusID : consensus_15456#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 686 fasta sequence [TCTATCATCCCAATATTGACTTGGAGGGAAATGTCTGCCTTAACATTCTGCGTGAAGATTGGAAGCCTGTCCTGAATGTCAACACGATGGTATATGGCTTGAATCTTCTTTTCTCACAACCTAATGATGAGGACCCTCTAAATCATGAGGCGGCAGCAGTTCTTCGAGACAACCCAGAAAAGTTTGAGAGAAATGTCCAGAGGGCAATGGCTGGAGGCTATGTTGGTGAAACCCACTTCCCTAGATGTATGTAAGGCCTGAAGATGGTGATCGGTACCTGACTTATCTGCTGCTGCCATTTCTCCTACCAATGCACTATGGTAAAAGCAGTATATGTAACCAAGAAGGAACTTCTTTGTTATGTAACAACAGCAGTTGCTAGAAAGTAAGTTAGTGAGGCAATTGAACTCACGTTCATAACCCGCAATCCGAAGACTCTGGGTTAACCTGTTGTGGCAAATGTTCTCTTTTGGCCCTCGCGCGCATTTCAGTCATTTTGATTCATACCAGTTTTTGAGATGCTTTTGTATAATGCCAGCTAGAGAAAATGCTGAACAGTATGTGTGTGCTGCACTTACTGCCTGTTATGACTTATGGCTACCAGGAAGTAAGAACAAGTTCACTAACATTGCTTAATGTAACATGCTACCTTGGGTAGTTGTGTTCTTTTTTCCAAAAAAAAAAAA] [-] EMBL CA763282 [TCTATCATCCCAATATTGACTTGGAGGGAAATGTCTGCCTTAACATTCTGCGTGAAGATTGGAAGCCTGTCCTGAATGTCAACACGATGGTATATGGCTTGAATCTTCTTTTCTCACAACCTAATGATGAGGACCCTCTAAATCATGAGGCGGCAGCAGTTCTTCGAGACAACCCAGAAAAGTTTGAGAGAAATGTCCAGAGGGCAATGGCTGGAGGCTATGTTGGTGAAACCCACTTCCCTAGATGTATGTAAGGCCTGAAGATGGTGATCGGTACCTGACTTATCTGCTGCTGCCATTTCTCCTACCAATGCACTATGGTAAAAGCAGTATATGTAACCAAGAAGGAACTTCTTTGTTATGTAACAACAGCAGTTGCTAGAAAGTAAGTTAGTGAGGCAATTGAACTCACGTTCATAACCCGCAATCCGAAGACTCTGGGTTAACCTGTTGTGGCAAATGTTCTCTTTTGGCCCTCGCGCGCATTTCAGTCATTTTGATTCATACCAGTTTTTGAGATGCTTTTGTATAATGCCAGCTAGAGAAAATGCTGAACAGTATGTGTGTGCTGCACTTACTGCCTGTTATGACTTATGGCTACCAGGAAGTAAGAACAAGTTCACTAACATTGCTTAATGTAACATGCTACCTTGGGTAGTTGTGTTCTTTTTTCCAAAAAAAAAAAA] [+] EMBL AU181740 [ ACAACAGCAGTTGCTAGAAAGTAAGTTAGTGAGGCAATTGAACTCACGTTCATAACCCNCAATCCGAAGACTNTGGGTTAACCTGTTGTGGCAAATGTTNTNTTTTGGCCCTCGCGCGCATNTCAGTCATTNTGATTCATACCAGTTTTTGAGATGCTTTTGTATAATGCCAGCTANAGAAAATGCTGAACAGTATGTGTGTGCTGCACTTACTGCCTGTTATGACTTATGGCTACCAGGAAGTAAGAACAAGTTCNCTAACATTGCTTAATGTAACATGCTACCTTGGGTAGTTGTGTTAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15456#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 509 fasta sequence [AATTAGTCCTGTGGATGTCTCTTGTTGATGCTTTGCCCTTGTTGGAAAACTTTACTTGATCTTGAATTAGTTTGCATGTGAAAATAGTGAATAATTACTTTAAGAGGCCACTAACAGATTATTGATATCTGTAACTTGGAACTTTCCGTAAGTAACTGAACTGATTTTGTGTCACACCCTGCCCATTTCATGTGTATGCTCCTGTAGAAAAAAAAAAGGTTTCTTTGGATAATTTGTTCTTCTTTCTCAGGAAAATGCTAAACCTTATTAAGATAAAGGGTCAAAAGAAGGAAGATGCAGCCAATGCAAATGGAAAGCCTCCTGCCAAAAAGCAAAGTCCAGGGGAGTCGCGTCTTCACAAAGGTTTGCCATTTCATAAATAATATAGTTCACTTGGGCTATCATTTGGTTTATGCAGTGTGATTATACTTATCAAGCATTTCCTTTCCTTTGTTTAGTTTGCATGAGTGTATCTCTGCATCTTACTACTCTCGTATCCAATTGGTGCA] [+] EMBL CF329009 [AATTAGTCCTGTGGATGTCTCTTGTTGATGCTTTGCCCTTGTTGGAAAACTTTACTTGATCTTGAATTAGTTTGCATGTGAAAATAGTGAATAATTACTTTAAGAGGCCACTAACAGATTATTGATATCTGTAACTTGGAACTTTCCGTAAGTAACTGAACTGATTTTGTGTCACACCCTGCCCATTTCATGTGTATGCTCCTGTAGAAAAAAAAAAGGTTTCTTTGGATAATTTGTTCTTCTTTCTCAGGAAAATGCTAAACCTTATTAAGATAAAGGGTCAAAAGAAGGAAGATGCAGCCAATGCAAATGGAAAGCCTCCTGCCAAAAAGCAAAGTCCAGGGGAGTCGCGTCTTCACAAAGGTTTGCCATTTCATAAATAATATAGTTCACTTGGGCTATCATTTGGTTTATGCAGTGTGATTATACTTATCAAGCATTTCCTTTCCTTTGTTTAGTTTGCATGAGTGTATCTCTGCATCTTACTACTCTCGTATCCAATTGGTGCA] consensusID : consensus_15456#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence [GGTAAAAGCAGTATATGTAACCAAGAAGGAACTTCTCTGTTATGTAACAACAGCAGTTGCTAGAAAGTAAGTTAGTGAGGCAATTGAACTCACGTTCATAACCCGCAATCCGAAGACTCTGGGTTANCCTGTTGTGGCAAATGTTCTCTTTTGGCCCTCGCGCGCATCTCAGTCATTCTGATTCATACCAGTTTCTGAGATGCTTTTGTATAATGCCAGCTAGAGAAAATGCTGAACAGTATGTGTGTGCTGCACTTACTGCCTGTTATGNCTTATGGCTACCAGGAAGTAAGAACAAGTTCACTAACATTGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C97078 [GGTAAAAGCAGTATATGTAACCAAGAAGGAACTTCTCTGTTATGTAACAACAGCAGTTGCTAGAAAGTAAGTTAGTGAGGCAATTGAACTCACGTTCATAACCCGCAATCCGAAGACTCTGGGTTANCCTGTTGTGGCAAATGTTCTCTTTTGGCCCTCGCGCGCATCTCAGTCATTCTGATTCATACCAGTTTCTGAGATGCTTTTGTATAATGCCAGCTAGAGAAAATGCTGAACAGTATGTGTGTGCTGCACTTACTGCCTGTTATGNCTTATGGCTACCAGGAAGTAAGAACAAGTTCACTAACATTGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15456#1 ------------------------------------------------------------ consensus_15456#3 ------------------------------------------------------------ consensus_15456#0 TGAATTACTAGAGTATCTTCCCCTTCCTTCCCTTGGGCCTTGGCGTAAAAGAAAGAGAAA 60 consensus_15456#2 ------------------------------------------------------------ consensus_15456#1 ------------------------------------------------------------ consensus_15456#3 ------------------------------------------------------------ consensus_15456#0 TCTCCATTCTCGTCGTCTCCTCAGCTGCTTGCGCCAAGACGAGTCGCGGCTCAACAGGGG 120 consensus_15456#2 ------------------------------------------------------------ consensus_15456#1 ------------------------------------------------------------ consensus_15456#3 ------------------------------------------------------------ consensus_15456#0 GAGGGGCGGCGATCTCCATCCATCCGGCGAGCAGAGCAGGGGAGGGGAGGGGATCCTGGA 180 consensus_15456#2 ------------------------------------------------------------ consensus_15456#1 ------------------------------------------------------------ consensus_15456#3 ------------------------------------------------------------ consensus_15456#0 AAATGCTAAACCTTATTAAGATAAAGGGTCAAAAGAAGGAAGATGCAGCCAATGCAAATG 240 consensus_15456#2 ------------------------------------------------------------ consensus_15456#1 ------------------------------------------------------------ consensus_15456#3 ------------------------------------------------------------ consensus_15456#0 GAAAGCCTCCTGCCAAAAAGCAAAGTCCAGGGGAGTTGCGTCTTCACAAAGATATTGCTG 300 consensus_15456#2 ------------------------------------------------------------ consensus_15456#1 ------------------------------------------------------------ consensus_15456#3 ------------------------------------------------------------ consensus_15456#0 AACTTAACCTTCCTAAGTCGACTAGAATTTCTTTTCCTAATGGCAAGGATGATTTGATGA 360 consensus_15456#2 ------------------------------------------------------------ consensus_15456#1 ------------------------------------------------------------ consensus_15456#3 ------------------------------------------------------------ consensus_15456#0 ACTTTGAAGTTACTATTCGACCTGATGAGGGATACTATGTAGGTGGTAAATTTATTTTTA 420 consensus_15456#2 ------------------------------------------------------------ consensus_15456#1 ------------------------------------------------------------ consensus_15456#3 ------------------------------------------------------------ consensus_15456#0 CTTTCCAAGTTCCTCCTGCCTATCCTCATGAACCACCCAAAGTCAAGTGCAAGACTAAGG 480 consensus_15456#2 ------------------------------------------------------------ consensus_15456#1 TCTATCATCCCAATATTGACTTGGAGGGAAATGTCTGCCTTAACATTCTGCGTGAAGATT 60 consensus_15456#3 ------------------------------------------------------------ consensus_15456#0 TCTATCATCCCAATATTGACTTGGAGGGAAATGTCTGCCTTAACATTCTGCGTGAAGATT 540 consensus_15456#2 ------------------------------------------------------------ consensus_15456#1 GGAAGCCTGTCCTGAATGTCAACACGATGGTATATGGCTTGAATCTTCTTTTCTCACAAC 120 consensus_15456#3 ------------------------------------------------------------ consensus_15456#0 GGAAGCCTGTCCTGAATGTCAACACGATTGTATATGGCTTGAATCTTCTTTTCTCACAAC 600 consensus_15456#2 ----------------------------------------------------------AA 2 consensus_15456#1 CTAATGATGAGGACCCTCTAAATCATGAGGCGGCAGCAGTTCTTCGAGACAACCCAGAAA 180 consensus_15456#3 ------------------------------------------------------------ consensus_15456#0 CTAATGATGAGGACCCTCTAAATCATGAGGCGGCAGCAGTTCTTCGAGACAACCCAGAAA 660 consensus_15456#2 TTAGTCCTGTGGA-----TGTCTCTTGTTGATGCTTTGCCCTTGTTGGAAAACTTTACTT 57 consensus_15456#1 AGTTTGAGAGAAATGTCCAGAGGGCAATGGCTGGAGGCTATGTTGGTGAAAC-CCACTTC 239 consensus_15456#3 ------------------------------------------------------------ consensus_15456#0 AGTTTGAGAGAAATGTCCAGAGGGCAATGGCTGGAGGCTATGTTGGTGAAAC-CCACTTC 719 consensus_15456#2 GATCTTGAATTAGTTTGCATGTGAAAATAGTGAATAATTACTTTAAGAGGCCACTAACAG 117 consensus_15456#1 CCTAGATGTATGTAAGGCCTGAAGATGGTGATCGGTACCTGA-CTTATCTGCTGCTGC-C 297 consensus_15456#3 ------------------------------------------------------------ consensus_15456#0 CCTAGATGTATGTAAGGCCTGAAGATGGTGATCGGTACCTGA-CTTATCTGCTGCTGC-C 777 consensus_15456#2 ATTATTGATATCTGTAACTTGGAACTTTCCGTAAGTAACTGAACTGATTTTGTGTCACAC 177 consensus_15456#1 ATTTCTCCTACCA---ATGCACTATGGTAAAAGCAGTATATGTAACCAAGAAGGAACTTC 354 consensus_15456#3 -------------------------GGTAAAAGCAGTATATGTAACCAAGAAGGAACTTC 35 consensus_15456#0 ATTTCTCCTACCA---ATGCACTATGGTAAAAGCAGTATATGTAACCAAGAAGGAACTTC 834 consensus_15456#2 CCTGCCCATTTCATGTGTATGCTCCTGTAGAAAAAAAAAAGGTTTCTTTGGATAATTTGT 237 *** ** * * * ** * * * * * consensus_15456#1 TTTGTTATGTAACAACAGCAGTTGCTAGAAAGTAAGTTAGTGAGGCAATTGAACTCACGT 414 consensus_15456#3 TCTGTTATGTAACAACAGCAGTTGCTAGAAAGTAAGTTAGTGAGGCAATTGAACTCACGT 95 consensus_15456#0 TCTGTTATGTAACAACAGCAGTTGCTAGAAAGTAAGTTAGTGAGGCAATTGAACTCACGT 894 consensus_15456#2 TCTTCTTTCTCAGGAAAAT-GCTAAACCTTATTAAGATAAAGGGTCAAAAGAAGGAAGAT 296 * * * * * * * * * * * **** ** * * *** *** * * consensus_15456#1 TCATAACCCGCAATCCGAAGACTCTGGGTTAACCTGTTGTGGCAAATGTTCTCTTTTGGC 474 consensus_15456#3 TCATAACCCGCAATCCGAAGACTCTGGGTTANCCTGTTGTGGCAAATGTTCTCTTTTGGC 155 consensus_15456#0 TCATAACCCGCAATCCGAAGACTCTGGGTTAACCTGTTGTGGCAAATGTTCTCTTTTGGC 954 consensus_15456#2 GCAGCCAATGCAAATGGAAAGCCTCCTGCCAAAAAGCAAAGTCCAGGGGAGTCGC---GT 353 ** **** *** * * * * * * * * ** * consensus_15456#1 CCTCGCGCGCATTTCAGTCATTTTGATTCATACCAGTTTTTGAGATGCTTTTGTATAATG 534 consensus_15456#3 CCTCGCGCGCATCTCAGTCATTCTGATTCATACCAGTTTCTGAGATGCTTTTGTATAATG 215 consensus_15456#0 CCTCGCGCGCATCTCAGTCATTCTGATTCATACCAGTTTCTGAGATGCTTTTGTATAATG 1014 consensus_15456#2 CTTCACAAAGGTTTGCCATTTCATAAATAATATAGTTCACTTGG--GCTATCATTTGGT- 410 * ** * * * * * * * *** * * * *** * * * * consensus_15456#1 CCAGCTAGAGAAAATGCTGAACAGTATGTGTGTGCTGCACTTACTGCCTGTTATGACTTA 594 consensus_15456#3 CCAGCTAGAGAAAATGCTGAACAGTATGTGTGTGCTGCACTTACTGCCTGTTATGNCTTA 275 consensus_15456#0 CCAGCTAGAGAAAATGCTGAACAGTATGTGTGTGCTGCACTTACTGCCTGTTATGACTTA 1074 consensus_15456#2 ----TTATGCAGTGTGAT------TATACTTATCAAGCATTTCCTTTCCTTTGTTTAGTT 460 ** * ** * *** * * *** ** ** * ** * * consensus_15456#1 TGGCTACCAGGAAGTAAGAACAAGTTCACTAACATTGCTTAATGTAACATGCTACCTTGG 654 consensus_15456#3 TGGCTACCAGGAAGTAAGAACAAGTTCACTAACATTGCTTAAAAAAAAAAAAAAAAAAAA 335 consensus_15456#0 TGGCTACCAGGAAGTAAGAACAAGTTCACTAACATTGCTTAATGTAACATGCTACCTTGG 1134 consensus_15456#2 TGCATGAGTGTATCTCTGCATCTTACTACTCTCGTATCCAATTGGTGCA----------- 509 ** * * * * * * *** * * * * * consensus_15456#1 GTAGTTGTGTTCTT--TTTTCCAAAAAAAAAAAA-------------------------- 686 consensus_15456#3 AAAAAAAAAAAAA---------AAAAAAAAAAAA-------------------------- 360 consensus_15456#0 GTAGTTGTGTTGTTCTTTTTTCCAAGCTCTGTAACTGGAAAAGTCTTCTCCACCTAAATG 1194 consensus_15456#2 ------------------------------------------------------------ consensus_15456#1 ----------------------- consensus_15456#3 ----------------------- consensus_15456#0 TTCTGAAAGGCATTTCATGGCTA 1217 consensus_15456#2 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||