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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15606#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1257 fasta sequence
[GGGCATGGTTAGATTCTGATTGCGAGGACGACTTCTACAGTGTGAATGGAGGTAATCTAATGATGCAGAGTAAATAGGTTCCTTCTCACTGGCATGTCTGTAGTGCCAGTGCCTTGTTCATGCTGTTTCCTTTTCAAGTCTATCCTATTATTGTATCAGTAGCATACTAGCATGAGGCCTGTTCTTTTTGTTTAGTCCAAATTGCATGTGCGCTGATTGATTTGGTGATGATACAGTTTTATCTGTCTCTCTGGATTCTAAGGGGCTTATTTTAGCCCTTTGATTGCTTGTTGAGACAAAAGGTTGAGGCCTTTGATTTCGTCTTTTGGCATTATCATGTTTCTAGCATCTAATAATCTGTTAGCTGCATTGGACCCCCCACCTTTAACTTCGGTTACCTATTCCATGGGGTCCTTTATTTCAGAAGTCTTGCTATACACTTAAATTATAAGAAACTCCATTTCTTCTGCATCATTCTGGAAGTTCAATGAACAAGTAGATATTCTACTGTACCAAGTGATTTTGATTGTTTTCAATTCATGTGTAATGTATGTTTTTTCGTGTGCAGATTTTACTCCGTCTCGTGGCAGCACTCCAAACTACCAACCCAGAACACAAACAGTTATGAGCAATGTCTTTGTACCTGATAATGTACAGAATTCCAAATCACCTGAACCTTCTCCAACTGGAAGGAGA-AAACTAGCCGAGCTC-TT-GCAGGAGGCGATGCAGAATGGTTCCGAAGATAGCACCGATGCATCTGTTCCAGACATCA-GCAAGAATGAGAAGC-AGCAATTCC-AGC-CTATTTCT-GCA-GCTGTGAAGCCAGTATCTGAGTCCAGCTCCACGTGTAGCAC-AGAACCGACGCCGATCAGAGAAGCGAAGAATCGCAAGGAGAAGGCGTGGTACA-CC-GGTC-GCT-GTTGCTTGCCGGCTTTTGTTCATACCCTAGACTTAGATGAGAGGAGGCAGAAGATGACCCCTGGGCCTTG-T-GCTGTTTGACATGGCTGCTTC-CCTTCTATGAGC--TGTATCTACAATATA-CTAC-CTGAT-CC-GGCC-CT-GAGTTC-ACTGT-AAAGAAGAC-TAGTA-TT--GAGAGC-A-CTATATCC-T-TGTAATAATCAA-GTGAATAGTCACTCTTGAGAATTCATGT-GCTGTATCCATGTTAAATCAACTGTAAGGTGAGGATATCTAGCT-CAAGAAATGATCATT-TTGTGCATATCTGGATGAATCTTTATGGATATAAAATTTTCTCAAAAATCAATAAAAAAAAAAAAA]
[+] EMBL CB666092 [GGGCATGGTTAGATTCTGATTGCGAGGACGACTTCTACAGTGTGAATGGAGGTAATCTAATGATGCAGAGTAAATAGGTTCCTTCTCACTGGCATGTCTGTAGTGCCAGTGCCTTGTTCATGCTGTTTCCTTTTCAAGTCTATCCTATTATTGTATCAGTAGCATACTAGCATGAGGCCTGTTCTTTTTGTTTAGTCCAAATTGCATGTGCGCTGATTGATTTGGTGATGATACAGTTTTATCTGTCTCTCTGGATTCTAAGGGGCTTATTTTAGCCCTTTGATTGCTTGTTGAGACAAAAGGTTGAGGCCTTTGATTTCGTCTTTTGGCATTATCATGTTTCTAGCATCTAATAATCTGTTAGCTGCATTGGACCCCCCACCTTTAACTTCGGTTACCTATTCCATGGGGTCCTTTATTTCAGAAGTCTTGCTATACACTTAAATTATAAGAAACTCCATTTCTTCTGCATCATTCTGGAAGTTCAATGAACAAGTAGATATTCTACTGTACCAAGTGATTTTGATTGTTTTCAATTCATGTGTAATGTATGTTTTTTCGTGTGCAGATTTTACTCCGTCTCGTGGCAGCACTCCAAACTACCAACCCAGAACACAAACAGTTATGAGCAATGTCTTTGTACCTGATAATGTACAGAATTCCAAATCACCTGAACCTTCTCCAACTGGAAGGAGA AAACTAGCCGAGCTC TT GCAGGAGGCGATGCAGAATGGTTCCGAAGATAGCACCGATGCATCTGTTCCAGACATCA GCAAGAATGAGAAGC AGCAATTCC AGC CTGTTTCT GCA GCTGTGAAGCCAGTATCTGAGTCCAGCTCC ]
[-] EMBL CB666091 [ ACAAGTAGATATTCTACTGTACCAAGTGATTTTGATTGTTTTCAATTCATGTGTAATGTATGTTTTTTCGTGTGCAGATTTTACTCCGTCTCGTGGCAGCACTCCAAACTACCAACCCAGAACACAAACAGTTATGAGCAATGTCTTTGTACCTGATAATGTACAGAATTCCAAATCACCTGAACCTTCTCCAACTGGAAGGAGA AAACTAGCCGAGCTC TT GCAGGAGGCGATGCAGAATGGTTCCGAAGATAGCACCGATGCATCTGTTCCAGACATCA GCAAGAATGAGAAGC AGCAATTCC AGC CTGTTTCT GCA GCTGTGAAGCCAGTATCTGAGTCCAGCTCCACGTGTAGCAC AGAACCGACGCCGATCAGAGAAGCGAAGAATCGCAAGGAGAAGGCGTGGTACA CC GGTC GCT GTTGCTTGCCGGCTTTTGTTCATACCCTAGACTTAGATGAGAGGAGGCAGAAGATGACCCCTGGGCCTTG T GCTGTTTGACATGGCTGCTTC CCTTCTATGAGC TGTATCTACAATATA CTAC CTGAT CC GGCC CT GAGTTC ACTGT AAAGAAGAC TAGTA TT GAGAGC A CTATATCC T TGTAATAATCAA GTGAATAGTCACTCTTGAGAATTCATGT GCTGTATCCATGTTAAATCAACTGTAAGGTGAGGATATCTAGCT CAAGAAATGATCATT TTGTGCATATCTGGATGAATCTTTATGGATATAAAATTTTCTCAGTTGTCAAT ]
[+] EMBL BQ906620 [ CTTCTCCAACTGGAAGGAGATAAACTA CCGAGCTCGTTNGCAGGAGGCGATGCAGAATGGTTCCGAAGATAGCACCGATGCATCTGTTCCAGACATCA GCAAGAATGAGAAGC AGCAATTCC AGC CTATTTCT GCANNCTGTGAAGCCAGTATCTGAGTCCAGCTCCACGTGTAGCAC AGAACCGACGCCGATCAGAGAAGCGAAGAATCGCAAGGAGAAGGCGTGGTACACCC GGTC GCT GTTGCTTGCCGGCTTTTGTTCATACCCTAGACTTAGATGAGAGGAGGCAGAAGATGACCCCTGGGCCTTGCTCGCTGTTTGACATGGCTGCTTC CCTTCTATGAGC TGTATCTAC ATATANCTAC CTGAT CC GGCC CT GAGTTC ACTGT AAAGAAGAC TAGTA TT GAGAGC A CTATATCC T TGTAATAATCAA GTGAATAGTCACTCTTGAGAATTCATGT GCTGTATCCATGTTAAATCAACTGTAAGGTGAGGATATCTAGCTCCAAGAAATGATCATTCTTGTGCAaaa ]
[+] EMBL CB097206 [ AAACTAGCCGAGCTC TT GCAGGAGGCGATGCAGAATGGTTCCGAAGATAGCACCGATGCATCTGTTCCAGACATCATGCAAGAATGAGAAGC AGCAATTCC AGC CTATTTCT GCA GCTGTGAAGCCAGTATCTGAGTCCAGCTCCACGTGTAGCAC AGAACCGACGCCGATCAGAGAAGCGAAGAATCGCAAGGAGAAGGCGTGGTACA CC GGTC GCT GTTGCTTGCCGGCTTTTGTTCATACCCTAGACTTAGATGAGAGGAGGCAGAAGATGACCCCTGGGCCTTG T GCTGTTTGACATGGCTGCTTC CCTTCTATGAGC TGTATCTACAATATA CTAC CTGAT CC GGCC CT GAGTTC ACTGT AAAGAAGAC TAGTA TT GAGAGC A CTATATCC T TGTAATAATCAA GTGAATAGTCACTCTTGAGAATTCATGT GCTGTATCCATGTTAAATCAACTGTAAGGTGAGGATATCTAGCT CAAGAAATGATCATT TTGTGCATATCTGGATGAATCTTTATGGATATAA ]
[+] EMBL BM418954 [ GAGAACCAACCAATTCCAAGCACTATTTCTGGCA GCTGTGAACCCAGTATCTGAGTCCAGCTCCACGTGTAGCACAAGAACCGACGCCGATCAGAGAAGCGAAGAATCGCAAGGAGAAGGC TGGTACA CCAGGTCAGCT GTTGCTTGCCGGCTTTTGTTCATACCCTAGACTTAGATGAGAGGA GCAGAAGATGACCCCT GGCCTTG T GCTGTTTGACAT GCTGCTTCACCTTCTATGA C TGTATCTACAATATA CTAC CTGAT CC GGCCACT GAGTTC ACTGTAAAAGAAGAC TAGTATTT GAGACC ACCTATATCCAT TGTAATAATCAA GTGAATAGTCACTCTTGAGAATTCATGT CTGTATCCATGTTAAATCAACTGTAAGTTGA GATATNTAGCT CAAGAAATGATCATT TTGTGCATATCTGGATGAATCTTTATGGATATAAAATTTTCTCAAAAA ]
[+] EMBL BM418743 [ ccGAGAAGCGAAGAATCGCAAGGAGAAGGCGTGGTACA CC GGTC GCT GTTGCTTGCCGGCTTTTGTTCATACCCTAGACTTAGATGAGAGGAGGCAGAAGATGACCCCTGGGCCTTG T GCTGTTTGACATGGCTGCTTC CCTTCTATGAGC TGTATCTACAATATA CTAC CTGAT CC GGCC CT GAGTTC ACTGT AAAGAAGAC TAGTA TT GAGAGC A CTATATCC T TGTAATAATCAA GTGAATAGTCACTCTTGAGAATTCATGT GCTGTATCCATGTTAAATCAACTGTAAGGTGAGGATATCTAGCT CAAGAAATGATCATT TTGTGCATATCTGGATGAATCTTTATGGATATAAAATTTTCTCAAAAA ]
[+] EMBL C99164 [ GGTC GCTGGTTGCTTGCCGGCTTTTGTCCATACCCTAGACTTAGATGAGAGGAGGCAGCAGATGACCCCTGGGCCTTG T GCTGTTTGACATGGCTGCTTC CCTTCTATGAGC TGTATCTACAATATA CTAC CTGAT CC GGCC CT GAGTTC ACTGT AAAGAAGAC TAGTA TT GAGAGC A CTATATCC T TGTAATAATCAA GTGAATAGTCACTCTTGAGAATTCATGT GCTGTATCCATGTTAAATCAACTGTAAGGTGAGGATATCTAGCT CAAGAAATGATCATT TTGTGCATATCTGGATGAATCTTTATGGATATAAAATTTTCTCAAAAA ]
[+] EMBL AU082702 [ aTTCTATGAGCNTTGTNTCTACAATATA CTACACTGATACC GGCC CT GAGTTC ACTGT AAAGAAGACNTAGTA TT GAGAGC A CTATATCC TCNGTAATAATCAACGTGAATAGTCACTCTTGAGAATTCATGTNGCTGTATCCATGTTAAATCAACTGTAAGGTGAGGATATCTAGCT CAAGAAATGATCATT TTGTGCATATCTGGATGAATCTTTATGGATATAAAATTTTCTCAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BI810929 [ CTAC CTGAT CCAGGCCACTGGAGTTCAACTGT AAAGAAGAC TAGTA TTTGGAGAGCAA CTATATCC T TGTAATAATCAA GTGAATAGTCACTCTTGAGAATTCATGT GCTGTATCCATGTTAAATCAACTGTAAGGTGAGGATATCTAGCT CAA ]
consensusID : consensus_15606#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1193 fasta sequence
[TAAAGAAACACACTCTCCCACTCTCTCCTCTCCTCTGTCCCTCTTCTTCCTCTTCTCCCAAGAG-CTCTCTCCTCTCTCTCTCTACTCTTCTCTTCTCTCTCCTTTTGTTGCTTCCATTTCTCGTTCTTGCACGGGGAAGAGGAGAGAAAGATGTGTGTCGCTGTGGTTTGAAAAAGGTTGGGTGTGAGAGGAGAGAGAAAGTGGAGTGGAGGGGAGAGAGAGAGAGAGAGATGGGTTCTTGCGCTTCGGTTCACAAGGACCTCGGGTTCCCCAAGAAGCTGTTTCTTGCGTCGTCGCCTACCAAGGAGAAGAAGGCCGCGAACGGG-AAGGGTGGCGGTGGCGGTGTGTCTGTTGATCTCAAGCGAAAGGAGCAGCAGCAGGCGG-CGGCGGCA-GG-GGTTGGCGTC-AGGAGCCCCGGTTCTGGTAGC-AAGGA-TGAAATGTTC-TTTGACTCGCGGGCATGGTT-AGATTCTGATTGCGAGGACGACTTCTACAGTGTGAATGGAGATTTTAC-TCCGTCTCGTGGCAGCACTCCAAACTACCAACCCAGAACACAAACAGTTATGAGCAATGTCTTTGTACCTGATAATGTACAGAATTCCAAATCACCTGAACCTTCTCCAACTGGAAGGAGAAAACTAGCCGAGCTCTTGCAGGAGGCGATGCAGAATGGTTCCGAAGATAGCACCGATGCATCTGTTCCAGACATCAGCAAGAATGAGAAGCAGCAATTCCAGCCTGTTTCTGCAGCTGTGAAGCCAGTATCTGAGTCCAGCTCC-ACGTGTAGCACAGAA-CCGACGCCGATCAGAGAAGCGAAG-AATCG-CAAGGAGAA-GGCGTGGTACACCGGTCGCTGTTGCTTGCCGGCTTTTGTTCA-TACCCTAGACTTAGATGAGAGGAGGCAGAAGATGA-CCCCTGGGCC-TTGTGCTGTTTGACATGGCTGCTTCCCTTCTATGAGCTGTATC-TACAA-TATACTACCTGATCCGGCCCTGAGTTCACTGTAAAGAAGACTAGTA-TTGAGAGCACTATATCCTTGTAATAATCAAGTGAATAGTCACTCTTGAGAATTCATGTGCTGTATCCATGTTAAATCAACTGTAAGGTGAGGATATCTAGCTCAAGAAATGATCATTTTGTGCATATCTGGATGAATCTTTATG-GATATAAAATTTTCTCAGTTGTCAATTTTGTAATCAAAAAAA]
[+] EMBL CF314936 [TAAAGAAACACACTCTCCCACTCTCTCCTCTCCTCTGTCCCTCTTCTTCCTCTTCTCCCAAGAG CTCTCTCCTCTCTCTCTCTACTCTTCTCTTCTCTCTCCTTTTGTTGCTTCCATTTCTCGTTCTTGCACGGGGAAGAGGAGAGAAAGATGTGTGTCGCTGTGGTTTGAAAAAGGTTGGGTGTGAGAGGAGAGAGAAAGTGGAGTGGAGGGGAGAGAGA AGA AAAAAGGGTTTCTTGCGCTTCGGTTCACAAGGACCTCGGGTTCCCCAAGAAGCTGTTTCTTGCGTCGTCGCCTACCAAGGAGAAGAAGGCCGCGAACGGG AAGGGTGGCGGTGGCGGTGTGTCTGTTGATCTCAAGCGAAAGGAGCAGCAGCAGGCGG CGGCGG A GG GGTTGGCGTC AGGAGCCCCGGTTCTGGTAGC AAGGA TGAAATGTTC TTTGACTCGCGGGCATGGTT AGATTCTGATTGCGAGGACGACTTCTACAGTGTGAATGGAGA TTTAC TCCGTCTCGTGGCAGCACTCCAAACTACCAACCCAGAACACAAACAGTTATGAGCAATGTCTTTGTACCTGATAATGTACAGAATTCCAAATCACC ]
[+] EMBL BE228875 [ ttcggCACGAGACTCTCTCCTCTCTCTCTCTACTCTTCTCTTCTCTCTCCTTTTGTTGCTTCCATTTCTCGTTCTTGCACGGGGAAGANGAGAGAAAGATGTGTGTCG ]
[+] EMBL AK069808 [ CTCCTCTCTCTCTCTACTCTTCTCTTCTCTCTCCTTTTGTTGCTTCCATTTCTCGTTCTTGCACGGGGAAGAGGAGAGAAAGATGTGTGTCGCTGTGGTTTGAAAAAGGTTGGGTGTGAGAGGAGAGAGAAAGTGGAGTGGAGGGGAGAGAGAGAGAGAGAGATGGGTTCTTGCGCTTCGGTTCACAAGGACCTCGGGTTCCCCAAGAAGCTGTTTCTTGCGTCGTCGCCTACCAAGGAGAAGAAGGCCGCGAACGGG AAGGGTGGCGGTGGCGGTGTGTCTGTTGATCTCAAGCGAAAGGAGCAGCAGCAGGCGG CGGCGGCA GG GGTTGGCGTC AGGAGCCCCGGTTCTGGTAGC AAGGA TGAAATGTTC TTTGACTCGCGGGCATGGTT AGATTCTGATTGCGAGGACGACTTCTACAGTGTGAATGGAGATTTTAC TCCGTCTCGTGGCAGCACTCCAAACTACCAACCCAGAACACAAACAGTTATGAGCAATGTCTTTGTACCTGATAATGTACAGAATTCCAAATCACCTGAACCTTCTCCAACTGGAAGGAGAAAACTAGCCGAGCTCTTGCAGGAGGCGATGCAGAATGGTTCCGAAGATAGCACCGATGCATCTGTTCCAGACATCAGCAAGAATGAGAAGCAGCAATTCCAGCCTGTTTCTGCAGCTGTGAAGCCAGTATCTGAGTCCAGCTCC ACGTGTAGCACAGAA CCGACGCCGATCAGAGAAGCGAAG AATCG CAAGGAGAA GGCGTGGTACACCGGTCGCTGTTGCTTGCCGGCTTTTGTTCA TACCCTAGACTTAGATGAGAGGAGGCAGAAGATGA CCCCTGGGCC TTGTGCTGTTTGACATGGCTGCTTCCCTTCTATGAGCTGTATC TACAA TATACTACCTGATCCGGCCCTGAGTTCACTGTAAAGAAGACTAGTA TTGAGAGCACTATATCCTTGTAATAATCAAGTGAATAGTCACTCTTGAGAATTCATGTGCTGTATCCATGTTAAATCAACTGTAAGGTGAGGATATCTAGCTCAAGAAATGATCATTTTGTGCATATCTGGATGAATCTTTATG GATATA ]
[+] EMBL CF325596 [ CTCTCTCTACTCTTCTCTTCTCTCTCCTTTTGTTGCTTCCATTTCTCGTTCTTGCACGGGGAAGAGGAGAGAAAGATGTGTGTCGCTGTGGTTTGAAAAAGGTTGGGTGTGAGAGGAGAGAGAAAGTGGAGTGGAGGGGAGAGAGAGAGAGAGAGATGGGTTCTTGCGCTTCGGTTCACAAGGACCTCGGGTTCCCCAAGAAGCTGTTTCTTGCGTCGTCGCCTACCAAGGAGAAGAAGGCCGCGAACGGG AAGGGTGGCGGTGGCGGTGTGTCTGTTGATCTCAAGCGAAAGGACCAGCAGCAGGCGG CGGCGGCA GG GGTTGGCGTC AGGAGCCCCGGCTCTGGTACC AAGGA TGAAATGTTC TTTGACTCGCGGGCATGGT ]
[+] EMBL C26849 [ tnntntgnTTGCTTCCATTTCTCGTTCTTGCACGGGGAAGAGGAGAGAAAGATGTGTGTCGCTGTGGTTTGAAAAAGGTTGGGTGTGANAGGAGAGAGAAAGTGGAGTGGAGGGGAGAGAGAGAGAGAGAGATGGGTTCTTNCNCTTCGGTTCACAAGGACCTCGGGTTCCCCAAGAAGCTGTTTCTTGCGTCGTCGNCTACCAAGGAGAAGAAGGCCGCGAACGGG AAGGGTGGCGGTGGCGGTGTGTCTGTTGATCTCAAGCGAAAGGAGCAGCAGCAGGCNG CG ]
[+] EMBL OSC381 [ CTTCCATTTCTCGTTCTTGCACGGGGAAGAGGAGAGAAAGATGTGTGTCGCTGTGGTTTGAAAAAGGTTGGGTGTGAGAGGAGAGAGAAAGTGGAGTGGAGGGGAGAGAGAGAGAGAGAGATGGGTTCTTGCGCTTCGGTTCACAAGGACCTCGGGTTCCCCAAGAAGCTGTTTCTTGCGTCGTCGCCTACCAAGGAGAAGAAGGCCGCGAACGGGAAAGGGTGGCGGTGGCGGTATGTCTGTTGATCTCAAGCGAAAGGAGCAGCAGCAGGCGGNCGGCGGCAGGG GGTTGGCGTC AGGAGCCCCGGTTCTGGTAGCAAAGGA TGAAATGTTCTTTTAACTCGCGGGCATGGTTAAGATTCTNATTGCAAAGACGACTTCTACAGTGTTAATGGNGATTTTACTTCCGTCTC ]
[+] EMBL C73419 [ TTCTCGTTCTTGCACGGGGAAGAGGAGAGAAAGATGTGTGTCGCTGTGGTTTNAAAAAGGTTGGGTGTGAGAGGAGAGAGAAAGTGGAGTGGAGGGGAGAGAGAGAGAGAGAGATGGGTTCTTGCGCTTCGGTTCACAAGGACCTCGGGTTCCCCAAGAAGCTGTTTCTTGCGTCGTCGCCTACCAAGGAGANGAAGGCCGCGAACGGG AAGGGTNGCGNTGGCGGTGTGTCTNTTGATCTCAAGCGAAAGGAGCAGCAGCAGGCGG CGGCGNCA GGCTGTTGGCGTCAAAGAGCCCCGGTTCTGGTAGC ANGGATTGAAATGTTC TTTGACTCGCGGGCATGGTTAAGATTCTGATTNCGAGGACGACTTCTACAGTGTGAATGGAGA ]
[+] EMBL OSR25081A [ CGGGGAAGAGGAGAGAAAGATGTGTGTCGCTGTGGTTTGAAAAAGGTTGGGTGTGAGAGGAGAGAGAAAGTGGAGTGGAGGGGAGAGAGAGAGAGAGAGATGGGTTCTTGCGCTTCGGTTCACAAGGACCTCGGGTTCCCCAAGAAGCTGTTTCTTGCGTCGTCGCCTACCAAGGAGAAGAAGGCCGCGAACGGG AAGGGTGGCGGTGGCGGTGTGTCTGTTGATCTCAAGCGAAAGGAGCAGCAGCAGGCGG CGGCGGCA GG GGTTGGCGTC AGGAGCCCCGGTTCTGGTAGC AAGGA TGAAATGTTC TTTGACTCGCGGGCATGGTT AGATTCTGATTGCGAGGACGACTTCTACAGTGTGAATGGAGATTTTAC TCCGTCTCG ]
[+] EMBL CA756277 [ GAGAGAGAGATGGGTTCTTGCGCTTCGGTTCACAAGGACCTCGGGTTCCCCAAGAAGCTGTTTCTTGCGTCGTCGCCTACCAAGGAGAAGAAGGCCGCGAACGGG AAGGGTGGCGGTGGCGGTGTGTCTGTTGATCTCAAGCGAAAGGAGCAGCAGCAGGCGG CGGCGGCA GG GGTTGGCGTC AGGAGCCCCGGTTCTGGTAGC AAGGA TGAAATGTTC TTTGACTCGCGGGCATG ]
[-] EMBL CF314937 [ GAGCTCTTGCAGGAGGCGATGCAGAATGGTTCCGAAGATAGCACCGATGCATCTGTTCCAGACATCAGCAAGAATGAGAAGCAGCAATTCCAGCCTGTTTCTGCAGCTGTGAAGCCAGTATCTGAGTCCAGCTCCNACGTGTAGCACGGAACCCGACGCCGATCAGAGAAGCGAAG AATCG CAAGGAGAA GGCGTGGTACACCGGTCGCTGTTGCTTGCCGGCTTTTGTTCA TACCCTAGACTTAGATGAGAGGAGGCAGAAGATGA CCCCTGGGCC TTGTGCTGTTTGACATGGCTGCTTCCCTTCTATGAGCTGTATC TACAA TATACTACCTGATCCGGCCCTGAGTTCACTGTAAAGAAGACTAGTA TTGAGAGCACTATATCCTTGTAATAATCAAGTGAATAGTCACTCTTGAGAATTCATGTGCTGTATCCATGTTAAATCAACTGTAAGGTGAGGATATCTAGCTCAAGAAATGATCATTTTGTGCATATCTGGATGAATCTTTATG GATATAAAATTTTCTCAGTTGTCAATTTTGTAATCAAAAAAA]
[+] EMBL BQ907106 [ TGAAGCCAGTATCTGAGTCCAGCTCC ACGTGTAGCACAGAA CCGACGCCGATCAGAGAAGCGAAGTAATCGTCAAGGAGAATGGCGTGGTACACCGGTCGCTGTTGCTTGCCGGCTTTTGTTCAGTACCCTAGACTTAGATGAGAGGAGGCAGAAGATGAGCCCCTGGGCCATTGTGCTGTTTGACATGGCTGCTTCCCTTCTATGAGCTGTATCTTACAAGTATACTACCTGATCCGGCCCTGAGTTCACTGTAAAGAAGACTAGTACTTGAGAGCACTATATCCTTGTAATAATCAAGTGAATAGTCACTCTTGAGAATTCATGTGCTGTATCCATGTTAAATCAACTGTAAGGTGAGGATATCTAGCTCAAGAAATGATCATTTTGTGCATATCTGGATGAATCTTTATGCNATATAAAATTTTCTCAGTTGTCAAaaaaa ]
[+] EMBL AU181531 [ AGTATCTGAGTCCAGCTCC ACGTGTAGCACAGAA CCGACGCCGATCAGAGAAGCGAAG AATCG CAAGGAGAA GGCGTGGTACACCGGTCGCTGTTGCTTGCCGGCTTTTGTTCA TACCCTAGACTTAGATGAGAGGAGGCAGAAGATGA CCCCTGGGCC TTGTGCTGTTTGACATGGCTGCTTCCCTTCTATGAGCTGTATC TACAA TATACTACCTGATCCGGCCCTGAGTTCACTGTAAAGAAGACTAGTA TTGAGAGCACTATATCCTTGTAATAATCAAGTGAATAGTCACTCTTGAGAATTCATGTGCTGTATCCATGTTAAATCAACTGTAAGGTGAGGATATCTAGCTCAAGAAATGATCATTTTGTGCATATCTGGATGAATCTTTATG GATATAAAATTTTCTCAGTTGTCAATTTTGTAATCAAAAA ]
consensusID : consensus_15606#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence
[TTTTTTTTTTGGCGGACGCGTGGGCGGACGCGTGGGGTTCTTGCGCTTCGGTTCACAAGGACCTCGGGTTCCCCAAGAAGCTGGTTTCTGTGCGTCGTCGCCTACCAAGGAGAAGAAGGCCGCGAACGGGAAGGGTGGCGGTGGCGGTGTGTCTGTTGATCTCAAGCGAAAGGAGCAGCAGCAGGCGGCGGCGGCAGGGGTTGGCGTCAGGAGCCCCGGTTCTGGTAGCAAGGATGAAATGTTCTTTGACTCGCGGGCATGGTTAGATTCTGATTGCGAGGACGACTTCTACAGGTGTGAATGGAGATTTTACTCCGGTCTCGGTGGCAGCACTCCAAACTACCAACCCAGAACACAAACAGTTATGAGCAAGGTCTTGGTACCTGATAATGTACAGAATTCCAAATCACCGTGAACCTTCTCCAACGGGAAGGAGAAAACTAGCCGAGCTCTTGCAGGAGGCGATGCAGAAGGGTTCCGAAGATAGCACCGATGCATCTGTGTCCAGACATCAGCAGA]
[-] EMBL BM418714 [TTTTTTTTTTGGCGGACGCGTGGGCGGACGCGTGGGGTTCTTGCGCTTCGGTTCACAAGGACCTCGGGTTCCCCAAGAAGCTGGTTTCTGTGCGTCGTCGCCTACCAAGGAGAAGAAGGCCGCGAACGGGAAGGGTGGCGGTGGCGGTGTGTCTGTTGATCTCAAGCGAAAGGAGCAGCAGCAGGCGGCGGCGGCAGGGGTTGGCGTCAGGAGCCCCGGTTCTGGTAGCAAGGATGAAATGTTCTTTGACTCGCGGGCATGGTTAGATTCTGATTGCGAGGACGACTTCTACAGGTGTGAATGGAGATTTTACTCCGGTCTCGGTGGCAGCACTCCAAACTACCAACCCAGAACACAAACAGTTATGAGCAAGGTCTTGGTACCTGATAATGTACAGAATTCCAAATCACCGTGAACCTTCTCCAACGGGAAGGAGAAAACTAGCCGAGCTCTTGCAGGAGGCGATGCAGAAGGGTTCCGAAGATAGCACCGATGCATCTGTGTCCAGACATCAGCAGA]
consensusID : consensus_15606#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence
[TNTNTNATTGCTTCCATTTCTCGTTCTTGTNAGGCAGAAGAGGAGAGAAAGATGTGTGTCGCTGTGGTTTGAAAAAGGTTGGGTGTNANAGGAGAGAGAAAGTGGAGTGGAGGGGAGAGAGAGAGAGAGAGATGGGTTCTTGCGCTTCGGTTCACAAGGACCTCGGGTTCCCCAAGAAGCTGTTTCTTGCGTCGTCGCCTACCAAGNAGAAGAAGGCCGCGACCGGNAAGGGTTGGCGTTGCCGTNTGTCTTTTGTTCNAAGCGAAAGAGCAGCANAAGCGGCCGCGGCA]
[+] EMBL C26998 [TNTNTNATTGCTTCCATTTCTCGTTCTTGTNAGGCAGAAGAGGAGAGAAAGATGTGTGTCGCTGTGGTTTGAAAAAGGTTGGGTGTNANAGGAGAGAGAAAGTGGAGTGGAGGGGAGAGAGAGAGAGAGAGATGGGTTCTTGCGCTTCGGTTCACAAGGACCTCGGGTTCCCCAAGAAGCTGTTTCTTGCGTCGTCGCCTACCAAGNAGAAGAAGGCCGCGACCGGNAAGGGTTGGCGTTGCCGTNTGTCTTTTGTTCNAAGCGAAAGAGCAGCANAAGCGGCCGCGGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15606#1 ------------------------------TAAAGAAACACACTCTCCCACTCTCTCCTC 30
consensus_15606#3 ------------------------------------------------------------
consensus_15606#2 ------------------------------------------------------------
consensus_15606#0 GGGCATGGTTAGATTCTGATTGCGAGGACGACTTCTACAGTGTGAATGGAGGTAATCTAA 60
consensus_15606#1 TCCTCTGTCCCTCTTCTTCCTCTTCTCCCAAGAGCTCTCTCCTCTCTCTCTCTACTCTTC 90
consensus_15606#3 ------------------------------------------------------------
consensus_15606#2 ------------------------------------------------------------
consensus_15606#0 TGATGCAGAGTAAATAGGTTCCTTCTCACTGGCATGTCTGTAGTGCCAGTGCCTTGTTCA 120
consensus_15606#1 TCTTCTCTCTCCTTTTGTTGCTTCCATTTCTCGTTCTTGCACGG-GGAAG----AGGAGA 145
consensus_15606#3 ----------TNTNTNATTGCTTCCATTTCTCGTTCTTGTNAGGCAGAAG----AGGAGA 46
consensus_15606#2 ------------------------------------------------------------
consensus_15606#0 TGCTGTTTCCTTTTCAAGTCTATCCTATTATTGTATCAGTAGCATACTAGCATGAGGCCT 180
consensus_15606#1 GAAAGATGTGTGTCGCTGTGGTTTGAAAAAGGTTGGGTGTGAGAGGAGAGAGAAAGTGGA 205
consensus_15606#3 GAAAGATGTGTGTCGCTGTGGTTTGAAAAAGGTTGGGTGTNANAGGAGAGAGAAAGTGGA 106
consensus_15606#2 -----------------------------------------------------TTTTTTT 7
consensus_15606#0 GTTCTTTTTGTTTAGTCCAAATTGCATGTGCGCTGATTGATTTGGTGATGATACAGTTTT 240
*
consensus_15606#1 GTGGA-----GGGGAGAGAGAGAGAGAGAGATGGGTTCTT-----GCGCTTCGGTTCACA 255
consensus_15606#3 GTGGA-----GGGGAGAGAGAGAGAGAGAGATGGGTTCTT-----GCGCTTCGGTTCACA 156
consensus_15606#2 TTTGG-----CGGACGCGTGGGCGGACGCGTGGGGTTCTT-----GCGCTTCGGTTCACA 57
consensus_15606#0 ATCTGTCTCTCTGGATTCTAAGGGGCTTATTTTAGCCCTTTGATTGCTTGTTGAGACAAA 300
* * * * * *** ** * * ** *
consensus_15606#1 AGG-----ACCTCGGGTTCCC--------CAAGAAGCTG-TTTCT-TGCGTCGTCGCCTA 300
consensus_15606#3 AGG-----ACCTCGGGTTCCC--------CAAGAAGCTG-TTTCT-TGCGTCGTCGCCTA 201
consensus_15606#2 AGG-----ACCTCGGGTTCCC--------CAAGAAGCTGGTTTCTGTGCGTCGTCGCCTA 104
consensus_15606#0 AGGTTGAGGCCTTTGATTTCGTCTTTTGGCATTATCATGTTTCTAGCATCTAATAATCTG 360
*** *** * ** * ** * ** ** * * **
consensus_15606#1 CCAAGGAGAAGAAGGCCGCGAACGGGAAG---GGTGGCGGTGGCGGTGTG--TCTGTTGA 355
consensus_15606#3 CCAAGNAGAAGAAGGCCGCGACCGGNAAG---GGTTGGCGTTGCCGTNTG--TCTTTTGT 256
consensus_15606#2 CCAAGGAGAAGAAGGCCGCGAACGGGAAG---GGTGGCGGTGGCGGTGTG--TCTGTTGA 159
consensus_15606#0 TTAGCTGCATTGGACCCCCCACCTTTAACTTCGGTTACCTATTCCATGGGGTCCTTTATT 420
* * ** * * * ** *** * * * ** *
consensus_15606#1 TCTCAAGCGAAAGGAGCAGCAGCAGGCGGCGGCGGCAGGGGTTGGCGTCAGGAGCCCCGG 415
consensus_15606#3 TCN-AAGCGAAAG-AGCAGCAN-AAGCGGCCGCGGCA----------------------- 290
consensus_15606#2 TCTCAAGCGAAAGGAGCAGCAGCAGGCGGCGGCGGCAGGGGTTGGCGTCAGGAGCCCCGG 219
consensus_15606#0 TCAGAAGTCTTGCTATACACTTAAATTATAAGAAACTCCATTTCTTCTGCATCATTCTGG 480
** *** * * * * *
consensus_15606#1 TTCTGGTAGCAAGGATGAAATGTTCTTTGACTCGCGGGCATGGTTAG-ATTCTGATTGCG 474
consensus_15606#3 ------------------------------------------------------------
consensus_15606#2 TTCTGGTAGCAAGGATGAAATGTTCTTTGACTCGCGGGCATGGTTAG-ATTCTGATTGCG 278
consensus_15606#0 AAGTTCAATGAACAAGTAGATATTCTACTGTACCAAGTGATTTTGATTGTTTTCAATTCA 540
consensus_15606#1 AGGACGACTTCTACAGTGTGAATGGAGATTTTACTCCGTCTCGTGGCAGCACTCCAAACT 534
consensus_15606#3 ------------------------------------------------------------
consensus_15606#2 AGGACGACTTCTACAGGTGTGAATGGAGATTTTACTCCGGTCTCGGTGGCAGCACTCCAA 338
consensus_15606#0 TGTGTAATGTATGTTTTTTCGTGTGCAGATTTTACTCCG--TCTCGTGGCAGCACTCCAA 598
consensus_15606#1 ACCAACCCAGAACACAAACAGTTATGAGCAATGTCTTTGTACCTGATAATGTACAGAATT 594
consensus_15606#3 ------------------------------------------------------------
consensus_15606#2 ACTACCAACCCAGAACACAAACAGTTATGAGCAAGGTCTTGGTACCTGATAATGTACAGA 398
consensus_15606#0 ACTACCAACCCAGAACACAAACAGTTATGAGCAATGTCTTTGTACCTGATAATGTACAGA 658
consensus_15606#1 CCAAATCACCTGAACCTTCTCCAACTGGAAGGAGAAAACTAGCCGAGCTCTTGCAGGAGG 654
consensus_15606#3 ------------------------------------------------------------
consensus_15606#2 ATTCCAAATCACCGTGAACCTTCTCCAACGGGAAGGAGAAAACTAGCCGAGCTCTTGCAG 458
consensus_15606#0 ATTCCAAATCACC-TGAACCTTCTCCAACTGGAAGGAGAAAACTAGCCGAGCTCTTGCAG 717
consensus_15606#1 CGATGCAGAATGGTTCCGAAGATAGCACCGATGCATCTGTTCCAGACATCAGCAAGAATG 714
consensus_15606#3 ------------------------------------------------------------
consensus_15606#2 GAGGCGATGCAGAAGGGTTCCGAAGATAGCACCGATGCATCTGTGTCCAGACATCAGCAG 518
consensus_15606#0 GAGGCGATGCAGAATGGTTCCGAAGATAGCACCGATGCATCTGT-TCCAGACATCAGCAA 776
consensus_15606#1 AGAAGCAGCAATTCCAGCCTGTTTCTGCAGCTGTGAAGCCAGTATCTGAGTCCAGCTCCA 774
consensus_15606#3 ------------------------------------------------------------
consensus_15606#2 A----------------------------------------------------------- 519
consensus_15606#0 GAATGAGAAGCAGCAATTCCAGCCTATTTCTGCAGCTGTGAAGCCAGTATCTGAGTCCAG 836
consensus_15606#1 CGTGTAGCACAGAACCGACGCCGATCAGAGAAGCGAAGAATCGCAAGGAGAAGGCGTGGT 834
consensus_15606#3 ------------------------------------------------------------
consensus_15606#2 ------------------------------------------------------------
consensus_15606#0 CTCCACGTGTAGCACAGAACCGACGCCGATCAGAGAAGCGAAGAATCGCAAGGAGAAGGC 896
consensus_15606#1 ACACCGGTCGCTGTTGCTTGCCGGCTTTTGTTCATACCCTAGACTTAGATGAGAGGAGGC 894
consensus_15606#3 ------------------------------------------------------------
consensus_15606#2 ------------------------------------------------------------
consensus_15606#0 GTGGTACACCGGTCGCTGTTGCTTGCCGGCTTTTGTTCATACCCTAGACTTAGATGAGAG 956
consensus_15606#1 AGAAGATGACCCCTGGGCCTTGTGCTGTTTGACATGGCTGCTTCCCTTCTATGAGCTGTA 954
consensus_15606#3 ------------------------------------------------------------
consensus_15606#2 ------------------------------------------------------------
consensus_15606#0 GAGGCAGAAGATGACCCCTGGGCCTTGTGCTGTTTGACATGGCTGCTTCCCTTCTATGAG 1016
consensus_15606#1 TCTACAATATACTACCTGATCCGGCCCTGAGTTCACTGTAAAGAAGACTAGTATTGAGAG 1014
consensus_15606#3 ------------------------------------------------------------
consensus_15606#2 ------------------------------------------------------------
consensus_15606#0 CTGTATCTACAATATACTACCTGATCCGGCCCTGAGTTCACTGTAAAGAAGACTAGTATT 1076
consensus_15606#1 CACTATATCCTTGTAATAATCAAGTGAATAGTCACTCTTGAGAATTCATGTGCTGTATCC 1074
consensus_15606#3 ------------------------------------------------------------
consensus_15606#2 ------------------------------------------------------------
consensus_15606#0 GAGAGCACTATATCCTTGTAATAATCAAGTGAATAGTCACTCTTGAGAATTCATGTGCTG 1136
consensus_15606#1 ATGTTAAATCAACTGTAAGGTGAGGATATCTAGCTCAAGAAATGATCATTTTGTGCATAT 1134
consensus_15606#3 ------------------------------------------------------------
consensus_15606#2 ------------------------------------------------------------
consensus_15606#0 TATCCATGTTAAATCAACTGTAAGGTGAGGATATCTAGCTCAAGAAATGATCATTTTGTG 1196
consensus_15606#1 CTGGATGAATCTTTATGGATATAAAATTTTCTCAGTTGTCAATTTTGTAATCAAAAAAA- 1193
consensus_15606#3 ------------------------------------------------------------
consensus_15606#2 ------------------------------------------------------------
consensus_15606#0 CATATCTGGATGAATCTTTATGGATATAAAATTTTCTCAAAAATCAATAAAAAAAAAAAA 1256
consensus_15606#1 -
consensus_15606#3 -
consensus_15606#2 -
consensus_15606#0 A 1257
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||