cluster # 1564

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Oryza sativa
cluster # 1564 cluster # 1564 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1564#0 length = 647 sequences # 1

consensus_1564#1 length = 232 sequences # 1

consensusID : consensus_1564#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 647
fasta sequence

                              [AGTCTCGAGTTTTTGTTTAATTAGCTAGGATTAATTTGTTACTTTTGTATAGTGTGTGGTGTGGATTATGAGTTGTGAGGAGGCGCTTTGNACAAAGATCGTGGCGATGTATGTGACTGCGTTGACATGGTTTGATCCATGTTCATATATGGAGAAACTTCATGCCTTGTTTCAGCCCCCATCGCAGGACATACGCTGAGGATGGAGGCAAAGTAGCTTCTAGTAACATCATTGCGAGAACTAGGGGGGGGCCCGGTCCCCAATCCGCCCTATGGGGGGGCGGTTTACGGCGGCCTCATTGGCCGAGGTTTTACAACGCCCGGGACTGGAAAACCCCTGGCGCTCCCCACGTTAGTCGTCTTTGGACGAATCCGCTTTAGCCCCCGTGGCGTGAGTCGTATAACCCCCGCCGCCAGCGGCCTTCCCACGCTTGCCCCACCCAAAGGCCGAAGCGCTCGTGCCTGGTCGCGGCAGCTTGCATCGCTGGGTCGGGGGGTTTACCGGCCCGGGCCCGGTGCCTCGGCCAGCGCCTCGGGCCACGCGTCTTCGGGGGTTGGCGTCCCTCTGGCGCAGCTCTGCGGGCGCTCCCGCTCATACCGCAGCGGGCGCGTCATTTCGGGGTGCGCGGGCGGCGTTTCCGCGCCGCG]

[+] EMBL CA757454             [AGTCTCGAGTTTTTGTTTAATTAGCTAGGATTAATTTGTTACTTTTGTATAGTGTGTGGTGTGGATTATGAGTTGTGAGGAGGCGCTTTGNACAAAGATCGTGGCGATGTATGTGACTGCGTTGACATGGTTTGATCCATGTTCATATATGGAGAAACTTCATGCCTTGTTTCAGCCCCCATCGCAGGACATACGCTGAGGATGGAGGCAAAGTAGCTTCTAGTAACATCATTGCGAGAACTAGGGGGGGGCCCGGTCCCCAATCCGCCCTATGGGGGGGCGGTTTACGGCGGCCTCATTGGCCGAGGTTTTACAACGCCCGGGACTGGAAAACCCCTGGCGCTCCCCACGTTAGTCGTCTTTGGACGAATCCGCTTTAGCCCCCGTGGCGTGAGTCGTATAACCCCCGCCGCCAGCGGCCTTCCCACGCTTGCCCCACCCAAAGGCCGAAGCGCTCGTGCCTGGTCGCGGCAGCTTGCATCGCTGGGTCGGGGGGTTTACCGGCCCGGGCCCGGTGCCTCGGCCAGCGCCTCGGGCCACGCGTCTTCGGGGGTTGGCGTCCCTCTGGCGCAGCTCTGCGGGCGCTCCCGCTCATACCGCAGCGGGCGCGTCATTTCGGGGTGCGCGGGCGGCGTTTCCGCGCCGCG]




>consensus_1564#0
AGTCTCGAGTTTTTGTTTAATTAGCTAGGATTAATTTGTTACTTTTGTATAGTGTGTGGT
GTGGATTATGAGTTGTGAGGAGGCGCTTTGNACAAAGATCGTGGCGATGTATGTGACTGC
GTTGACATGGTTTGATCCATGTTCATATATGGAGAAACTTCATGCCTTGTTTCAGCCCCC
ATCGCAGGACATACGCTGAGGATGGAGGCAAAGTAGCTTCTAGTAACATCATTGCGAGAA
CTAGGGGGGGGCCCGGTCCCCAATCCGCCCTATGGGGGGGCGGTTTACGGCGGCCTCATT
GGCCGAGGTTTTACAACGCCCGGGACTGGAAAACCCCTGGCGCTCCCCACGTTAGTCGTC
TTTGGACGAATCCGCTTTAGCCCCCGTGGCGTGAGTCGTATAACCCCCGCCGCCAGCGGC
CTTCCCACGCTTGCCCCACCCAAAGGCCGAAGCGCTCGTGCCTGGTCGCGGCAGCTTGCA
TCGCTGGGTCGGGGGGTTTACCGGCCCGGGCCCGGTGCCTCGGCCAGCGCCTCGGGCCAC
GCGTCTTCGGGGGTTGGCGTCCCTCTGGCGCAGCTCTGCGGGCGCTCCCGCTCATACCGC
AGCGGGCGCGTCATTTCGGGGTGCGCGGGCGGCGTTTCCGCGCCGCG

consensusID : consensus_1564#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 232
fasta sequence

                              [AGTCTCGAGTTTTTGTTTAATTAGCTAGGATTAATTTGTTACTTTTGTATAGTGTGTGGTGTGGATTATGAGTTGTGAGGAGGCGCTTTGTACAAAGATCGAGGCGATGTATGTCACTGCGTTGACATGGTTTGATCCATGTTCATATATGGAGAAACTTCATCCCTTGTTTCAGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACC]

[+] EMBL CA757930             [AGTCTCGAGTTTTTGTTTAATTAGCTAGGATTAATTTGTTACTTTTGTATAGTGTGTGGTGTGGATTATGAGTTGTGAGGAGGCGCTTTGTACAAAGATCGAGGCGATGTATGTCACTGCGTTGACATGGTTTGATCCATGTTCATATATGGAGAAACTTCATCCCTTGTTTCAGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACC]




>consensus_1564#1
AGTCTCGAGTTTTTGTTTAATTAGCTAGGATTAATTTGTTACTTTTGTATAGTGTGTGGT
GTGGATTATGAGTTGTGAGGAGGCGCTTTGTACAAAGATCGAGGCGATGTATGTCACTGC
GTTGACATGGTTTGATCCATGTTCATATATGGAGAAACTTCATCCCTTGTTTCAGTCCAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1564#0      AGTCTCGAGTTTTTGTTTAATTAGCTAGGATTAATTTGTTACTTTTGTATAGTGTGTGGT 60
consensus_1564#1      AGTCTCGAGTTTTTGTTTAATTAGCTAGGATTAATTTGTTACTTTTGTATAGTGTGTGGT 60
                      ************************************************************

consensus_1564#0      GTGGATTATGAGTTGTGAGGAGGCGCTTTGNACAAAGATCGTGGCGATGTATGTGACTGC 120
consensus_1564#1      GTGGATTATGAGTTGTGAGGAGGCGCTTTGTACAAAGATCGAGGCGATGTATGTCACTGC 120
                      ****************************** ********** ************ *****

consensus_1564#0      GTTGACATGGTTTGATCCATGTTCATATATGGAGAAACTTCATGCCTTGTTTCAGCCCCC 180
consensus_1564#1      GTTGACATGGTTTGATCCATGTTCATATATGGAGAAACTTCATCCCTTGTTTCAGTCCAA 180
                      ******************************************* *********** **  

consensus_1564#0      ATCGCAGGACATACGCTGAGGATGGAGGCAAAGTAGCTTCTAGTAACATCATTGCGAGAA 240
consensus_1564#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACC-------- 232
                      *    *  * * *     *  *   *   ***  *      *  ** *            

consensus_1564#0      CTAGGGGGGGGCCCGGTCCCCAATCCGCCCTATGGGGGGGCGGTTTACGGCGGCCTCATT 300
consensus_1564#1      ------------------------------------------------------------
                                                                                  

consensus_1564#0      GGCCGAGGTTTTACAACGCCCGGGACTGGAAAACCCCTGGCGCTCCCCACGTTAGTCGTC 360
consensus_1564#1      ------------------------------------------------------------
                                                                                  

consensus_1564#0      TTTGGACGAATCCGCTTTAGCCCCCGTGGCGTGAGTCGTATAACCCCCGCCGCCAGCGGC 420
consensus_1564#1      ------------------------------------------------------------
                                                                                  

consensus_1564#0      CTTCCCACGCTTGCCCCACCCAAAGGCCGAAGCGCTCGTGCCTGGTCGCGGCAGCTTGCA 480
consensus_1564#1      ------------------------------------------------------------
                                                                                  

consensus_1564#0      TCGCTGGGTCGGGGGGTTTACCGGCCCGGGCCCGGTGCCTCGGCCAGCGCCTCGGGCCAC 540
consensus_1564#1      ------------------------------------------------------------
                                                                                  

consensus_1564#0      GCGTCTTCGGGGGTTGGCGTCCCTCTGGCGCAGCTCTGCGGGCGCTCCCGCTCATACCGC 600
consensus_1564#1      ------------------------------------------------------------
                                                                                  

consensus_1564#0      AGCGGGCGCGTCATTTCGGGGTGCGCGGGCGGCGTTTCCGCGCCGCG 647
consensus_1564#1      -----------------------------------------------