cluster # 1579

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1579 cluster # 1579 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1579#0 length = 619 sequences # 1

consensus_1579#1 length = 471 sequences # 1

consensusID : consensus_1579#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 619
fasta sequence

                              [ACGCCGCCGCGCTCGCCGTTCCGGAGGAGGAGGAGGAGAGGGGACCCGCCCGCCCGCGCGCCTCGCTGCTCTGCCTCGTCTTCCGGTGCGACGACGGCGACGAGGCGAACGCGGTGGCGGTCCGGAGGAGCGGCGGCGGCGCGCAGGACGGCGGGTGGTGGCCGCGGGCGGCGTGGAAGGGCGAGGGCGACGAATCCAACTCCGACTCGGACTCGGACTCGGACTCCGACTGCGACTCGGACTCGGACGACGACGACGACGAGGGAGGCGAGGGCGGCATCGTGGGGTGGTTCTGGTCGCTGGCGCATCGCTTCTGATGATTTCTGGATGATCCTGGCCGTCCATGGCCGTGGATGCTTCTTGTGATCACGTTATCTTGTTTAAGTAGTCATTATTAGGGGGGTAGATATAGAACTGCTATTCCTCCTCCATGCACACCATCCCTGTGGGCCCATTGAGTGCGTTTGCAGGCTGTAAAGCTATATTGACGAGAAAACGATGCTCCTACGCTTTCGCGAATCCATGTTAAGACGGTGTTGCCCTTACGCGCCTCTCAGCGCCCCTTGTTGCTTATTTGTATGTTTACTACCCGCCCCCGCTGGGCGGCTTTGTTCCCTCG]

[+] EMBL CA757344             [ACGCCGCCGCGCTCGCCGTTCCGGAGGAGGAGGAGGAGAGGGGACCCGCCCGCCCGCGCGCCTCGCTGCTCTGCCTCGTCTTCCGGTGCGACGACGGCGACGAGGCGAACGCGGTGGCGGTCCGGAGGAGCGGCGGCGGCGCGCAGGACGGCGGGTGGTGGCCGCGGGCGGCGTGGAAGGGCGAGGGCGACGAATCCAACTCCGACTCGGACTCGGACTCGGACTCCGACTGCGACTCGGACTCGGACGACGACGACGACGAGGGAGGCGAGGGCGGCATCGTGGGGTGGTTCTGGTCGCTGGCGCATCGCTTCTGATGATTTCTGGATGATCCTGGCCGTCCATGGCCGTGGATGCTTCTTGTGATCACGTTATCTTGTTTAAGTAGTCATTATTAGGGGGGTAGATATAGAACTGCTATTCCTCCTCCATGCACACCATCCCTGTGGGCCCATTGAGTGCGTTTGCAGGCTGTAAAGCTATATTGACGAGAAAACGATGCTCCTACGCTTTCGCGAATCCATGTTAAGACGGTGTTGCCCTTACGCGCCTCTCAGCGCCCCTTGTTGCTTATTTGTATGTTTACTACCCGCCCCCGCTGGGCGGCTTTGTTCCCTCG]




>consensus_1579#0
ACGCCGCCGCGCTCGCCGTTCCGGAGGAGGAGGAGGAGAGGGGACCCGCCCGCCCGCGCG
CCTCGCTGCTCTGCCTCGTCTTCCGGTGCGACGACGGCGACGAGGCGAACGCGGTGGCGG
TCCGGAGGAGCGGCGGCGGCGCGCAGGACGGCGGGTGGTGGCCGCGGGCGGCGTGGAAGG
GCGAGGGCGACGAATCCAACTCCGACTCGGACTCGGACTCGGACTCCGACTGCGACTCGG
ACTCGGACGACGACGACGACGAGGGAGGCGAGGGCGGCATCGTGGGGTGGTTCTGGTCGC
TGGCGCATCGCTTCTGATGATTTCTGGATGATCCTGGCCGTCCATGGCCGTGGATGCTTC
TTGTGATCACGTTATCTTGTTTAAGTAGTCATTATTAGGGGGGTAGATATAGAACTGCTA
TTCCTCCTCCATGCACACCATCCCTGTGGGCCCATTGAGTGCGTTTGCAGGCTGTAAAGC
TATATTGACGAGAAAACGATGCTCCTACGCTTTCGCGAATCCATGTTAAGACGGTGTTGC
CCTTACGCGCCTCTCAGCGCCCCTTGTTGCTTATTTGTATGTTTACTACCCGCCCCCGCT
GGGCGGCTTTGTTCCCTCG

consensusID : consensus_1579#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 471
fasta sequence

                              [TTCTTAAATCACACCACAAAAATTCACAAATCCACAAATACTAGTATTAGTACTAATCACGAGAGCAAGAGCAAAGCATGGCCCCCGCAGGCGCCGCCGCTGCCGCCCTCGCTCCTACCGATTGAATGGTGGCCGCGGGCGGCGTGGAAGGGCGAGGGCGACGAATCCAACTCCGACTCGGACTCGGACTCCGACTGCGACTCGGACTCGGACGACGACGACGACGAGGGAGGCGAGGGCGGCATCGTGGGGTGGTTCTGGTCGCTGGCGCATCGCTTCTGATGATTTCTGGATGATCCTGGCCGTCCATGGCCGCGGATGCTTCTTGTGATCACGTTATCTTGTTTAATTAAGCATTATTAGGGGGGTAGATATAGTACTGTAATTCCTCCTCCATGCAGATCATCCCAATAGCATCATTGTGTGTGTCTGCAGTCTGTAAAGCTATATTGATGAATAAATGATGCTCCT]

[+] EMBL AK105221             [TTCTTAAATCACACCACAAAAATTCACAAATCCACAAATACTAGTATTAGTACTAATCACGAGAGCAAGAGCAAAGCATGGCCCCCGCAGGCGCCGCCGCTGCCGCCCTCGCTCCTACCGATTGAATGGTGGCCGCGGGCGGCGTGGAAGGGCGAGGGCGACGAATCCAACTCCGACTCGGACTCGGACTCCGACTGCGACTCGGACTCGGACGACGACGACGACGAGGGAGGCGAGGGCGGCATCGTGGGGTGGTTCTGGTCGCTGGCGCATCGCTTCTGATGATTTCTGGATGATCCTGGCCGTCCATGGCCGCGGATGCTTCTTGTGATCACGTTATCTTGTTTAATTAAGCATTATTAGGGGGGTAGATATAGTACTGTAATTCCTCCTCCATGCAGATCATCCCAATAGCATCATTGTGTGTGTCTGCAGTCTGTAAAGCTATATTGATGAATAAATGATGCTCCT]




>consensus_1579#1
TTCTTAAATCACACCACAAAAATTCACAAATCCACAAATACTAGTATTAGTACTAATCAC
GAGAGCAAGAGCAAAGCATGGCCCCCGCAGGCGCCGCCGCTGCCGCCCTCGCTCCTACCG
ATTGAATGGTGGCCGCGGGCGGCGTGGAAGGGCGAGGGCGACGAATCCAACTCCGACTCG
GACTCGGACTCCGACTGCGACTCGGACTCGGACGACGACGACGACGAGGGAGGCGAGGGC
GGCATCGTGGGGTGGTTCTGGTCGCTGGCGCATCGCTTCTGATGATTTCTGGATGATCCT
GGCCGTCCATGGCCGCGGATGCTTCTTGTGATCACGTTATCTTGTTTAATTAAGCATTAT
TAGGGGGGTAGATATAGTACTGTAATTCCTCCTCCATGCAGATCATCCCAATAGCATCAT
TGTGTGTGTCTGCAGTCTGTAAAGCTATATTGATGAATAAATGATGCTCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1579#0      ACGCCGCCGCGCTCGCCGTTCCGGAGGAGGAGGAGGAGAGGGGACCCGCCCGCCCGCGCG 60
consensus_1579#1      ------------------TTCTTAAATCACACCACAAAA----ATTCACAAATCCACAAA 38
                                        ***   *     *  *  * *    *  * *    ** *   

consensus_1579#0      CCTCGCTGCTCTGCCTCGTCTTCCGGTGCGACGACGGCGACGAGGCGAACGCGGTGGCGG 120
consensus_1579#1      TACTAGTATTAGTACTAATCA-CGAGAGCAAGAGCAA-AGCATGGCCCCCGCAGGCGCCG 96
                            *  *    **  **  *  * ** *   *     *  ***   *** *  ** *

consensus_1579#0      TCCGGAGGAGCGGCGGCGGCGCGCAGGACGGC-GGGTGGTGGCCGCGGGCGGCGTGGAAG 179
consensus_1579#1      CC------GCTGCCGCCCTCGCTCCTACCGATTGAATGGTGGCCGCGGGCGGCGTGGAAG 150
                       *         * ** *  *** *    **   *  ************************

consensus_1579#0      GGCGAGGGCGACGAATCCAACTCCGACTCGGACTCGGACTCGGACTCCGACTGCGACTCG 239
consensus_1579#1      GGCGAGGGCGACGAATCCAACTCCGACTCGGACTCG------GACTCCGACTGCGACTCG 204
                      ************************************      ******************

consensus_1579#0      GACTCGGACGACGACGACGACGAGGGAGGCGAGGGCGGCATCGTGGGGTGGTTCTGGTCG 299
consensus_1579#1      GACTCGGACGACGACGACGACGAGGGAGGCGAGGGCGGCATCGTGGGGTGGTTCTGGTCG 264
                      ************************************************************

consensus_1579#0      CTGGCGCATCGCTTCTGATGATTTCTGGATGATCCTGGCCGTCCATGGCCGTGGATGCTT 359
consensus_1579#1      CTGGCGCATCGCTTCTGATGATTTCTGGATGATCCTGGCCGTCCATGGCCGCGGATGCTT 324
                      *************************************************** ********

consensus_1579#0      CTTGTGATCACGTTATCTTGTTTAAGTAGTCATTATTAGGGGGGTAGATATAGAACTGCT 419
consensus_1579#1      CTTGTGATCACGTTATCTTGTTTAATTAAGCATTATTAGGGGGGTAGATATAGTACTGTA 384
                      ************************* **  *********************** ****  

consensus_1579#0      ATTCCTCCTCCATGCACACCATCCCTGTGGGCCCATTGAGTGCGTTTGCAGGCTGTAAAG 479
consensus_1579#1      ATTCCTCCTCCATGCAGATCATCCCAATAGCATCATTGTGTGTGTCTGCAGTCTGTAAAG 444
                      **************** * ******  * *   ***** *** ** ***** ********

consensus_1579#0      CTATATTGACGAGAAAACGATGCTCCTACGCTTTCGCGAATCCATGTTAAGACGGTGTTG 539
consensus_1579#1      CTATATTGATGAATAAATGATGCTCCT--------------------------------- 471
                      ********* **  *** *********                                 

consensus_1579#0      CCCTTACGCGCCTCTCAGCGCCCCTTGTTGCTTATTTGTATGTTTACTACCCGCCCCCGC 599
consensus_1579#1      ------------------------------------------------------------
                                                                                  

consensus_1579#0      TGGGCGGCTTTGTTCCCTCG 619
consensus_1579#1      --------------------