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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15954#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 733 fasta sequence
[TTTTTTTTTTTTTTTAGATC-AACACATAGTTATATATAGTATCAAATGATCTTGTTATACATTA-GTGCATTACAGCC-TTTTTTTTAATACTCATTAC-AAACTTAGGATACAAGCTAAAAGATCATTGT-ATCCACTGGGGATGTACAGGTGTTGCATCTCTTAT-TGTTACTACCATATAGTATTACAACCATGCCATGAGATGCACACACCAGAAACACTTGCATTACACTACCTTATCAGCTAGGCCGGTACACTACACAAGACTAAAGGTGTTCA-TTGTGCCAGTGCCAGCCCCGGGTCCAT-GGAGC-TGGTATGTC-TGGCTTGGTAC-AACCTGAAGAACACCTGGTTGCTTCTTGAGCTCCTCGACCT-GC-T-GGGGAGTAAG-TTTTGCAGAGAAACCGCTTGCGGCGTGCT-TGT-AGTGGTAGAGC-ACCGCCTCCTTTGCCTTCTCCTCGCTGCCGAGGACGGGGGCGAGGGTGCGGATGTGGAACTCCTCGGGGTCGGC-GTCCGCGGGGCGGTCCAGGTAGACGATCTGCACGGTCGCCTCCTGCGCCGCGGGGG-CCGCCTGCTCCGGCTGCTCGGCCGACATGGCGATCTGGGGAACGGATGCTG-CCGCCGCGAGGAAGATGAGGAGGAGGATTGGGAAGGAGTTGCTGAGAACGCTCGAGGATTTGGTCTTCATCACCCGTGGATTCCGAGGTCTTAATAGCCGTGATATTCTCGTTCTCTTCCGCGTTAT]
[+] EMBL CF335555 [TTTTTTTTTTTTTTTAGATC AACACATAGTTATATATAGTATCAAATGATCTTGTTATACATTA GTGCATTACAGCC TTTTTTTTAATACTCATTAC AAACTTAGGATACAAGCTAAAAGATCATTGT ATCCACTGGGGATGTACAGGTGTTGCATCTCTTAT TGTTACTACCATATAGTATTACAACCATGCCATGAGATGCACACACCAAAAACACTTGCATTACACTACCTTATCAGCTAGGCCGGTACACTACACAAGACTAAAGGTGTTCA TTGTGCCAGTGCCAGCCCCGGGTCCAT GGAGC TGGTATGTC TGGCTTGGTAC AACCTGAAAAACACCTGGTTGCTTCTTGAGCTCCTCGACCT GC T GGGGAGTAAG TTTTGCAAAAAAACCGCTTGCGGCGTGCT TGT AGTGGTAAAGC ACCGCCTCCTTTGCCTTCTCCTCGCTGCCG ]
[-] EMBL AU182158 [ TTTTTTTTTTTTAGATC AACACATAGTTATATATAGTATCAAATGATCTTGTTATACATTA GTGCATTACAGCC TTTTTTTTAATACTCATTAC AAACTTAGGATACAAGCTAAAAGATCATTGT ATCCACTGGGGATGTACAGGTGTTGCATCTCTTAT TGTTACTACCATATAGTATTACAACCATGCCATGAGATGCACACACCAGAAACACTTGCATTACACTACCTTATCAGCTAGGCCGGTACACTACACAAGACTAAAGGTGTTCA TTGTGCCAGTGCCAGCCCCGGGTCCAT GGAGC TGGTATGTC TGGCTTGGTAC AACCTGAAGAACACCTGGTTGCTTCTTGAGCTCCTCGACCT GC T GGGGAGTAAG TTTTGCAGAGAAACCGCTTGCGGCGTGCT TGT AGTGGTAGAGC ACCGCCTC ]
[-] EMBL AU182179 [ TTTTTTTTTTTTAGATC AACACATAGTTATATATAGTATCAAATGATCTTGTTATACATTA GTGCATTACAGCCTTTTTTTTTAATACTCATTAC AAACTTAGGATACAAGCTAAAAGATCATTGT ATCCACTGGGGATGTACAGGTGTTGCATCTCTTAT TGTTACTACCATATAGTATTACAACCATGCCATGAGATGCACACACCAGAAACACTTGCATTACACTACCTTATCAGCTAGGCCGGTACACTACACAAGACTAAAGGTGTTCA TTGTGCCAGTGCCAGCCCCGGGTCCAT GGAGC TGGTATGTC TGGCTTGGTAC AACCTGAANAACACCTGGTTGCTTCTTGAGCTCCTCGACCT GC T GGGGAGTAAG TTTTGCANAGAAACCGCTTGCGGCGTGCT TGT AGTGGTAGAGC AC ]
[-] EMBL CA754201 [ TTTTTTTTNTTAGATC AACACATAGTTATATATAGTATCAAATGATCTNGTTATACATTA GTGCATTACAGCC TTTTNTTAATACTCATTAC AAACTTAGGATACAAGCTAAAAGATCATNGT ATCCACTGGGGATGTACAGGTGTTGCATCTCTTAT TGTTACTACCATATAGTATTACAACCATGCCATGAGATGCACACACCAGAAACACTTGCATTACACTACCTTATCAGCTAGGCCGGTACACTACACAAGACTAAAGGTGTTCA TTGTGCCAGTGCCAGCCCCGGGTCCAT GGAGC TGGTATGTC TGGCTTGGTAC AACCTGAAGAACACCTGGTTGCTTCTTGAGCTCCTCGACCT GC T GGGGAGTAAG TTTTGCAGAGAAACCGCTTGCGGCGTGCT TGT AGTGGTAGAGC ACCGCCTCCTTTGCCTTCTCCTCGCTGCCGAGGACGGGGGCGAGGGTGCGGATGTGGAACTCCTCGGGGTCGGC GTCCGCGGGGCGGTCCAGGTAGACGATCTGCACGGTCGCCTCCTGCGCCGCGGGGG CCGCCTGCTCCGGCTGCTCGGCCGACATGGCGATCTGGGGAACGGATGCTG CCGCCGCGAG ]
[-] EMBL BI798734 [ TTTTTTTTTTATATC AACACATAGTTATATATAGTATCAAATGATCTTGTTATACATTAGGTGGATTACAGGC TTTTTTTTAATACTCATTAC AAACTTAGGATACAAGCTAAAAGATCATTGTGATCCACTGGGGATGTACAGGTGTTGGATCTCTTATGTG TACTACCATATAGTATTACAACCATGGCATGAGATGCACACACCAGAAACACTTGCATTACACTACCTTATCAGCTAGG CGGTACACTACACAAGACTAAAGGTGTTCATTTGTGCCAGTGGCAG CCCGGGTCCATGGGAGC TGGTATGTC TGGCTTGGTAC AACTGGAAGAACACCTGGTTGCTTCTTGAGCTCCTCGAACTGGCTT GGGGAGTAAGCTTTTGGAGAGAAACCGGTTGCGGCGTGCTATGTAAGTGGTAGAGCGACCGGCTCCTTTGgc ]
[+] EMBL CF290956 [ TTTTTTTTTAGATC AACACATAGTTATATATAGTATCAAATGATCTTGTTATACATTA GTGCATTACAGCC TTTTTTTTAATACTCATTAC AAACTTAGGATACAAGCTAAAAGATCATTGT ATCCACTGGGGATGTACAGGTGTTGCATCTCTTAT TGTTACTACCATATAGTATTACAACCATGCCATGAGATGCACACACCAGAAACACTTGCATTACACTACCTTATCAGCTAGGCCGGTACACTACACAAGACTAAAGGTGTTCA TTGTGCCAGTGCCAGCCCCGGGTCCAT GGAGC TGGTATGTC TGGCTTGGTAC AACCTGAAGAACACCTGGTTGCTTCTTGAGCTCCTCGACCT GC TGGGGGAGTAAG TTTTGCAGAGAAACCGCTTGCGGCGTGCT TGT AGTGGTAGAGC ACCGCCTCCTTT ]
[-] EMBL CF290957 [ TTTTTTTTAGATCAAACACATAGTTATATATAGTATCAAATGATCTTGTTATACATTA GTGCATTACAGCC TTTTTTTTAATACTCATTAC AAACTTAGGATACAAGCTAAAAGATCATTGT ATCCACTGGGGATGTACAGGTGTTGCATCTCTTAT TGTTACTACCATATAGTATTACAACCATGCCATGAGATGCACACACCAGAAACACTTGCATTACACTACCTTATCAGCTAGGCCGGTACACTACACAAGACTAAAGGTGTTCA TTGTGCCAGTGCCAGCCCCGGGTCCAT GGAGC TGGTATGTC TGGCTTGGTAC AACCTGAAGAACACCTGGTTGCTTCTTGAGCTCCTCGACCT GC T GGGGAGTAAG TTTTGCAGAGAAACCGCTTGCGGCGTGCT TGT AGTGGTAGAGC ACCGCCTCCTTTGCCTTCTCCTCGCTGCCGAGGACGGGGGCGAGGGTGCGGATGTGGAACTCCTCGGGGTCGGC GTCCGCGGGGCGGTCCAGGTAGACGATCTGCACGGTCGCCTCCTGCGCCGCGGGGG CCGCCTGCTCCGGCTGCTCGGCCGACATGGCGATCTGGGGAACGGATGCTG CCGCCGCGAGGAAGATGAGGAGGAGGATTGGGAAGGAGTTGCTGAGAACGCTCGAGGATTTGGTCTTCATCACCCGTGGATTCCGAGGTCTTAATAGCCGTGATATTCTCGTTCTCTTCCGCGTTAT]
[-] EMBL AU163995 [ TTTTTTTAGATC AACACATAGTTATATATAGTATCAAATGATCTTGTTATACATTA GTGCATTACAGCC TTTTTTTTAATACTCATTAC AAACTTAGGATACAAGCTAAAAGATCATTGT ATCCACTGGGGATGTACAGGTGTTGCATCTCTTAT TGTTACTACCATATAGTATTACAACCATGCCATGAGATGCACACACCAGAAACACTTGCATTACACTACCTTATCAGCTAGGCCGGTACACTACACAAGACTAAAGGTGTTCA TTGTGCCAGTGCCAGCCCCGGGTCCAT GGAGC TGGTATGTC TGGCTTGGTAC AACCTGAAGAACACCTGGTTGCTTCTTGAGCTCCTCGACCT GC T GGGGAGTAAG TTTTGCAGAGAAACCGCTTGCGGCGTGCT TGT AGTGGTAGAGC ACCGNCTCCTTTGCCTTCTCCTCGCTGCCGAGGACGGGGGCGAGGGTGCGGATGTGGAACTCCTCGGGGTCGGC GTCCGCGGGGCGGTCCANGTAGACGATCTGCACGGTCGCCTTCTGCGCCGC ]
[-] EMBL BI797248 [ TTTTTATATC AACACATAGTTATATATAGTATCAAATGATCTTGTTATACATTA GTG ATTACAG C TTTTTTTTAATACTCATTAC AAA TTAGGATA AAG TAAAAGATCA TGT ATCCACTGGGGATGTACAGGTG TGCATCTCTTA TGTTACTACCATATAGTATTACAACCATGCCATGAGATGCACACACCAGAAACACTTGCATTACACTACCTTATCAG TAGG CGGTACACTACACAAGACTAAAGGTGTTCA TTGTGCCAGTGCCAG CCCGGGTCCAT GGAGCGTGGTATGTCTTGGTGTGGTAC AACCTGAAGAACACCT GTTGCTTCTTGAGCT CTCGA CT G T GGGGAGTAAG CTTTGCAG ]
[-] EMBL AU085952 [ TTTTTAGATC AACACATAGTTATATATAGTATCAAATGATCTTGTTATACATTA GTGCATTACAGCC TTTTTTTTAATACTCATTAC AAACTTAGGATACAAGCTAAAAGATCATTGT ATCCACTGGGGATGTACAGGTGTTGCATCTCTTAT TGTTACTACCATATAGTATTACAACCATGCCATGAGATGCACACACCAGAAACACTTGCATTACACTACCTTATCAGCTAGGCCGGTACACTACACAAGACTAAAGGTGTTCA TTGTGCCAGTGCCAGCCCCGGGTCCAT GGAGC TGGTATGTC TGGCTTGGTAC AACCTGAAGAACACCTGGTTGCTTCTTGAGCTCCTCGACCT GC T GGGGAGTAAG TTTTGCAGAGAAACCGCTTGCGGCGTGCT TGT AGTGGTAGAGC ACCGCCTCCTTTGCCTTCTCCTCGCTGCCGAGGACGGGGGCGAGGGTGCGGATGTGGAACTCCTCGGGGTCGGC GTCCGCGGGGCGGTCCAGGTAGACGATCTGCACGGTCGCCTTCTGCGCCGCGGGGGCCCGNCTGCTCCGGCTGCTCGGCCGACATGGCGATCTGGGGAACGGATGCTGCCCGCCGCGAGGA ]
[+] EMBL CB966699 [ aataacaTTATATC AACACATAGTTATATATAGTATCAAATGATCTCGTTATACATTA GTGCATTACAGCC TTTTTTTTAATACTCATTAC AAACTTAGGATACAAGCTAAAAGATCATGGT ATCCACTGGGGATGTACAGGTGTTGCATCTCTTAT TGTTACTACCAat ]
[+] EMBL BU673198 [ CATAGTTATATATAGTATCAAATGATCTTGTTATACATTA GTGCATTACAGCC TTTTTTTTAATACTCATTAC AAACTTAGGATACAAGCTAAAAGATCATTGT ATCCACTGGGGATGTACAGGTGTTGCATCTCTTAT TGTTACTACCATATAGTATTACAACCATGCCATGAGATGCACACACCAGAAACACTTGCATTACACTACCTTATCAGCTAGGCCGGTACACTACACAAGACTAAAGGTGTTCA TTGTGCCAGTGCCAGCCCCGGGTCCAT GGAGC TGGTATGTC TGGCTTGGTAC AACCTGAAGAACACCTGGTTGCTTCTTGAGCTCCTCGACCT GC T GGGGAGTAAG CTTTGCAGAGAAACCGCTTGCGGCGTGCT TGT AGTGGTAGAGC ACCGCCTCCTTTGCCTTCTCCTCGCTGCCGAGGACGGGGGCGAGGGTGCGGATGTGGAACTCCTCGGGGTCGGC GTCCGCGGGGCGGTCCAGGTAGACGATCTGCACGGTCGCCTCCTGCGCCGCGGGGG CCGCCTGCTCCGGCTGCTCGGTCGACATGGCGATCTGGGGAACGTATGCTG CCGCCGCGAGGAAGATGAGGAGGAGGATTGGGAAGGAGTTGCTGAGAACGCTCGAGGATTTGGTCTTCATC CTCGTGc ]
[-] EMBL AK058810 [ ATAGTTATATATAGTATCAAATGATCTTGTTATACATTA GTGCATTACAGCC TTTTTTTTAATACTCATTAC AAACTTAGGATACAAGCTAAAAGATCATTGT ATCCACTGGGGATGTACAGGTGTTGCATCTCTTAT TGTTACTACCATATAGTATTACAACCATGCCATGAGATGCACACACCAGAAACACTTGCATTACACTACCTTATCAGCTAGGCCGGTACACTACACAAGACTAAAGGTGTTCA TTGTGCCAGTGCCAGCCCCGGGTCCAT GGAGC TGGTATGTC TGGCTTGGTAC AACCTGAAGAACACCTGGTTGCTTCTTGAGCTCCTCGACCT GC T GGGGAGTAAG TTTTGCAGAGAAACCGCTTGCGGCGTGCT TGT AGTGGTAGAGC ACCGCCTCCTTTGCCTTCTCCTCGCTGCCGAGGACGGGGGCGAGGGTGCGGATGTGGAACTCCTCGGGGTCGGC GTCCGCGGGGCGGTCCAGGTAGACGATCTGCACGGTCGCCTCCTGCGCCGCGGGGG CCGCCTGCTCCGGCTGCTCGGCCGACATGGCGATCTGGGGAACGGATGCTG CCGCCGCGAGGAAGATGAGGAGGAGGATTGGGAAGGAGTTGCTGAGAACGCTCGAGG ]
[-] EMBL CF335556 [ TAATACTCA TACAAAACTTAGGATACAAGCTAAAAGATCATTGT ATCCACTGGGGATGTACAGGTGTTGCATCTCTTAT TGTTACTACCATATAGTATTACAACCATGCCATGAGATGCACACACCAGAAACACTTGCATTACACTACCTTATCAGCTAGGCCGGTACACTACACAAGACTAAAGGTGTTCA TTGTGCCAGTGCCAGCCCCGGGTCCAT GGAGC TGGTATGTC TGGCTTGGTAC AACCTGAAGAACACCTGGTTGCTTCTTGAGCTCCTCGACCT GC T GGGGAGTAAG TTTTGCAGAGAAACCGCTTGCGGCGTGCT TGT AGTGGTAGAGC ACCGCCTCCTTTGCCTTCTCCTCGCTGCCGAGGACGGGGGCGAGGGTGCGGATGTGGAACTCCTCGGGGTCGGC GTCCGCGGGGCGGTCCAGGTAGACGATCTGCACGGTCGCCTCCTGCGCCGCGGGGG CCGCCTGCTCCGGCTGCTCGGCCGACATGGCGATCTGGGGAACGGATGCTG CCGCCGCGAGGAAGATGAGGAGGAGGATTGGGAAGGAGTTGCTGAGAACGCTC ]
[-] EMBL CF280282 [ CATGAGATGCACACACCAGAAACACTTGCATTACACTACCTTATCAGCTAGGCCGGTACACTACACAAGACTAAAGGTGTTCA TTGTGCCAGTGCCAGCCCCGGGTCCAT GGAGC TGGTATGTC TGGCTTGGTAC AACCTGAAGAACACCTGGTTGCTTCTTGAGCTCCTCGACCT GC T GGGGAGTAAG TTTTGCAGAGAAACCGCTTGCGGCGTGCT TGT AGTGGTAGAGC ACCGCCTCCTTTGCCTTCTCCTCGCTGCCGAGGACGGGGGCGAGGGTGCGGATGTGGAACTCCTCGGGGTCGGC GTCCGCGGGGCGGTCCAGGTAGACGATCTGCACGGTCGCCTCCTGCGCCGCGGGGG CCGCCTGCTCCGGCTGCTCGGCCGACATGGCGATCTGGGGAACGGATGCTG CCGCCGCGAGGAAGATGAGGAGGAGGATTGGGAAGGAGTTGCTGA ]
[-] EMBL OSC23261 [ TACACTA CTTAANAACTAGGCCGGTACACTACACAAGACTAAAGGTGTNCA TTGTGCCANTGCCAACCNCGGGTCCAT GGAGC TGGTATGTC TGCCTTGGTAC AACCTGAAGAACACCTGGTTGCTTCTTGAGCTCCTCGACCT GC T GGGGAGTAAG TTTTGCAGAGAAACCGCTTGCGNCGTGCT TGT AGTGGTAGAGC ACCGCCTCCTTTGCCTTCTCCTCGCTGCCGAGGACGGGGGCGAGGGTGCGGATGTGGAACTCCTCGGGGTCGNC GTCCGCGGGGCGGTCCAGGTAGACGATCTGCACGGTCGCCTCCTGCGCCGCGGGGG CCGCCTGCTCCGGCTGCTCGGCCGACATGGCGATCTGGGGAACGGAT CTG CCGCCGCGAGGAAGATGAGGAGGAGGATTGGGAAGGAGTTGncnta ]
[-] EMBL OSC2141 [ CCAT GAAGC TGGTATGTC TGGCTTGGTAC AACCTGAAGAACACCTGGTTGCTTCTTGAGCTCCTCGACCT GC T GGGGAGTAAG TTTTGCAGAGAANACGCTTGCGGCGTGCT TGT AGTGGTAGAGC ACCGCCTCCTTTGCCTTCTCCTCGCTGCCGAGGACGGGGGCGAGGGTGCGGATGTGGAACTCCTCGGGGTCGGCNGTC CGGGGCGGTCCAGGTAGACGATCTGCACGGTCGCCTCCTGCGCC NGGGGG CAGCNTGCTCCGGCTGCTCGGCCGANATGGCGATCTGGGGAACGGAT NTG CCGCCGCGAGGAAGATGAGGAGGAGGATTGGGAA ]
[-] EMBL OSC3271 [ ATGTC TGGCTTGGTAA AACCTNAANAACACCTGGTTGCTTCTTGAGCTCCTCGACCT GC T GGGAAGTAAG TTTTGCAGAGAAACCGCTTGCGGCGTGCT TGT AGTGGTAGAGC ACCGCCTCCTTTGCCTTCTCCTCGCTGCCGAGGACGGGGGCGAGGGTGCGGATGTGGAACTCCTCGGGGTCGGC GTCCGCGGGGCGGTCCAGGTAGACGATCTGCACGGTCGCCTCCTGCGCCGCGGGGG CCGCCTGCTCCGGCTGCTCGGCCGACATGGCGATCTGGGGAACGGAT CTG CCGCCGCGAGGAAGATGAGGAGGAGGATTGGGAAGGAGTTGCTGAGAACGCTCGAGGATTTGGTCTTCATCACCCGTGGATTCCGAGGTCTTAATAGCCGTGATATTCTCGTTCTC ]
[-] EMBL C97841 [ tct TGNCTTGGTACAAACCTNAAGAACACCTGGTTGCTTCTTGANCTCCTCGACCT AC T GGGAAGTAAG TTTTGCAGAGAAACCGCTTGCGACGTGCT TGT AGTGGTAGAGC ACCGCCTCCTTTGCCTTCTCCTCGCTGCCGAGGACGAGGACGAGGGTGCGGATGTGGAACTCCTCGGGGTCGNC GTCCGCNGGACGGTCCAGGTAGACGATCTGCACGGTCGCCTCCTGCGCCGCGGGGG CCGCCTGCTCCGGCTGCTCGGCCGACATGGCGATCTGGGGAACGGAT CTG CCGCCGCGAGGAAGATGAGGAGGAGGATTGGGAAGGAGTTGCT ]
[-] EMBL OSC24341 [ GTGGTAGAGC ACCGCCTCCTTTGCCTTCTCCTNGCTNCCGAGGACGGGGNCGAGGGTNCGGATGTGGAACTCCTCGGGGTCGGC GTCCGCGGGNCGGTCCAGGTAGACGATCTGCACGGTCGCCTCCTGCGCCGCGGGGG CCGCCTGCTCCGGCTGCTCGGCCGACATGGCGATCTGGGGAACGGAT CTG CCGCCGCGAGGAAGATGAGGAGGAGGATTGGNNAGGAGTTGncat ]
consensusID : consensus_15954#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence
[TTTTTTTTTTGGAATAGATAAGGGTGGCTTTTTATATACTCATTACAAACTTAGGATACAAGCTAAAAGATCATTGGTATCCACGGGGGATGTACAGGTGTTGCATCTCTTATGGGTACTACCATATAGTATTACAACCATGCCATGAGATGCACACACCAGAAACACTGTGCATTACACTACCTTATCAGCTAGGCCGGTACACTACACAAGACTAAAGGTGTTCATTGTGCCAGTGCCAGCCCCGGTGTCCAGGGAGCTGGTATGTCTGGGCTGGGTACAACCTGAAGAACACCGGGTTGCTTCTTGAGCTCCTCGACCTGCTGGGGAGTAAGCTTTGCAGAGAAACCGCTTGCGGCGTGCATATGTAGGTGGTAAAGCACCGCCTCCTTATGCCTTCTCCTCGTGCCGAGGACGGGGTGCGAGGGTGCGGATGTGCCGGA]
[-] EMBL BI798770 [TTTTTTTTTTGGAATAGATAAGGGTGGCTTTTTATATACTCATTACAAACTTAGGATACAAGCTAAAAGATCATTGGTATCCACGGGGGATGTACAGGTGTTGCATCTCTTATGGGTACTACCATATAGTATTACAACCATGCCATGAGATGCACACACCAGAAACACTGTGCATTACACTACCTTATCAGCTAGGCCGGTACACTACACAAGACTAAAGGTGTTCATTGTGCCAGTGCCAGCCCCGGTGTCCAGGGAGCTGGTATGTCTGGGCTGGGTACAACCTGAAGAACACCGGGTTGCTTCTTGAGCTCCTCGACCTGCTGGGGAGTAAGCTTTGCAGAGAAACCGCTTGCGGCGTGCATATGTAGGTGGTAAAGCACCGCCTCCTTATGCCTTCTCCTCGTGCCGAGGACGGGGTGCGAGGGTGCGGATGTGCCGGA]
consensusID : consensus_15954#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence
[TTTTTTTTTTGGAATAGATAAGGGTGCCTTTTTATATACTCATTAAAATTAGGATACAAGCTAAAAGATCATGGGTATCCACGTGGGGATGTACAGGGTGTTGCATCTCGTTATGGGTTACTACCATATAGTATTACAACCAGTGCCAGTGAGAATGCACACACCAGAAAACACTGCATTACACTACCTTATCAGCTAGGCCGGTACACTACACAAGGACTAAGAGGGTGTTCATTGTGCCAGTGCCAGCCCCGGGTCCAGGGAGCTGGTATGTCTGGCTGGGTACAACCTGAAGAACACCGGGTTGCTTCTTGAGCTCCTCGACCTGCTGGGGAGTAAGCTTGTGCAGAGAAACCGTTGCGGCGTGCTTGTAGGGGTAGAGCACCGCTCCTTGGGCTTCTCCTCGCTGCCGAGGACGGGGGCGAGGGT]
[-] EMBL BI798866 [TTTTTTTTTTGGAATAGATAAGGGTGCCTTTTTATATACTCATTAAAATTAGGATACAAGCTAAAAGATCATGGGTATCCACGTGGGGATGTACAGGGTGTTGCATCTCGTTATGGGTTACTACCATATAGTATTACAACCAGTGCCAGTGAGAATGCACACACCAGAAAACACTGCATTACACTACCTTATCAGCTAGGCCGGTACACTACACAAGGACTAAGAGGGTGTTCATTGTGCCAGTGCCAGCCCCGGGTCCAGGGAGCTGGTATGTCTGGCTGGGTACAACCTGAAGAACACCGGGTTGCTTCTTGAGCTCCTCGACCTGCTGGGGAGTAAGCTTGTGCAGAGAAACCGTTGCGGCGTGCTTGTAGGGGTAGAGCACCGCTCCTTGGGCTTCTCCTCGCTGCCGAGGACGGGGGCGAGGGT]
consensusID : consensus_15954#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 418 fasta sequence
[AAAGGTGTTCATTGTGCCAGTGCCAGCCCCGGGTCCATGGAGNTGGTATNTNTGGNTTGGNACAACCTGAAGAACACCTGGTTGCTTNTTGAGCTCCTCGACCTGNTGGGGAGTAAGTTTTGCAGAGAAACCGCTTGCGGCGTGCTTGTAGTGGTAGAGCACCGCCTCCTTTGCCTTNTCCTCGCTGCCCGAGGACGGGGGCGAGGGTGCGGATGTGGAACTCCTCGGGGTCGGCGTCCGCGGGGCGGTCCAGGTAGACGATCTGCACGGTCGCCTCCTGCGCCGCGGGGGCCGCCTGCTCCGGCTGCTCGGCCGACATGGCGATCTGGGGAACGGATGCTGCCGCCGCGAGGAAGATGAGGAGGAGGATTGGGAAGGAGTTCTCGTACCTCAATTCCACAGCCCCTCGTGCCGAATT]
[-] EMBL AA751855 [AAAGGTGTTCATTGTGCCAGTGCCAGCCCCGGGTCCATGGAGNTGGTATNTNTGGNTTGGNACAACCTGAAGAACACCTGGTTGCTTNTTGAGCTCCTCGACCTGNTGGGGAGTAAGTTTTGCAGAGAAACCGCTTGCGGCGTGCTTGTAGTGGTAGAGCACCGCCTCCTTTGCCTTNTCCTCGCTGCCCGAGGACGGGGGCGAGGGTGCGGATGTGGAACTCCTCGGGGTCGGCGTCCGCGGGGCGGTCCAGGTAGACGATCTGCACGGTCGCCTCCTGCGCCGCGGGGGCCGCCTGCTCCGGCTGCTCGGCCGACATGGCGATCTGGGGAACGGATGCTGCCGCCGCGAGGAAGATGAGGAGGAGGATTGGGAAGGAGTTCTCGTACCTCAATTCCACAGCCCCTCGTGCCGAATT]
consensusID : consensus_15954#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 376 fasta sequence
[TGCAAGCAAAAAACNAGATTTATTCCTCTCGTTTCATTTTCCNAGATATAGAAGAACGGTAAACGGGCATAATTCTGAAAGAAAAATAGGATAGAGTACTGACTCTTGAGCTCCTCGACCTGCTGGGGAGTAAGTTTTGCAGAGAAACGCTTGCGGCGTGCTTGTAGTGGTAGAGCACCGCCTCCTTTGCCTTCTCCTCGCTGCCGAGGACGGGGGCGAGGGTGCGGATGTGGAACTCCTCGGGGTCGGNGGTCCGGGGNGGTCCAGGTAGACGATCTGCACGGTCGCCTCCTGCGCCNGGGGGCNGCCTGCTCCGGCTGCTCGGCCGACATGGNGATCTGGGGNACCGGATCTGCCGCCGCGAGGAAGATGAGGA]
[-] EMBL C28820 [TGCAAGCAAAAAACNAGATTTATTCCTCTCGTTTCATTTTCCNAGATATAGAAGAACGGTAAACGGGCATAATTCTGAAAGAAAAATAGGATAGAGTACTGACTCTTGAGCTCCTCGACCTGCTGGGGAGTAAGTTTTGCAGAGAAACGCTTGCGGCGTGCTTGTAGTGGTAGAGCACCGCCTCCTTTGCCTTCTCCTCGCTGCCGAGGACGGGGGCGAGGGTGCGGATGTGGAACTCCTCGGGGTCGGNGGTCCGGGGNGGTCCAGGTAGACGATCTGCACGGTCGCCTCCTGCGCCNGGGGGCNGCCTGCTCCGGCTGCTCGGCCGACATGGNGATCTGGGGNACCGGATCTGCCGCCGCGAGGAAGATGAGGA]
consensusID : consensus_15954#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 288 fasta sequence
[TCGACCTNCTGNGGAGTAAAGTTNTGCAGAGAAACCGCTTGCGNCGTGCTTGAANTGGTAGANCAACGCCTCCTNTGCCTTCTCCNCNCTGCCGAGGACNGGGACGANGGTNCGGATGTGGAACTCCTCGGGGTCGCCGNACNCGGGACGGTCCAGGTAGACGATCTGCACGGTCGCCTCCTGCGCCGCGGGGGCCGNCTGCTCCGNCTGCTCGGCCGACATGGCGATCTGGGGAACGGAATCTGACGNCGCGAGGAAGATGAGGAGGAGGATTGGGAAGGAGTTGCT]
[-] EMBL AU069643 [TCGACCTNCTGNGGAGTAAAGTTNTGCAGAGAAACCGCTTGCGNCGTGCTTGAANTGGTAGANCAACGCCTCCTNTGCCTTCTCCNCNCTGCCGAGGACNGGGACGANGGTNCGGATGTGGAACTCCTCGGGGTCGCCGNACNCGGGACGGTCCAGGTAGACGATCTGCACGGTCGCCTCCTGCGCCGCGGGGGCCGNCTGCTCCGNCTGCTCGGCCGACATGGCGATCTGGGGAACGGAATCTGACGNCGCGAGGAAGATGAGGAGGAGGATTGGGAAGGAGTTGCT]
consensusID : consensus_15954#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 153 fasta sequence
[TTTTTTCTAAAAGAGAATAACATTATATCAAGCACATAGTTATATATAGTATCAAATGATCTGGTTATACATTAGTGGATTACAGCTTTTTTTTAATACTCATTACAAACTTAGGATACAAGCTAAAAGATCATGTATCCACTGGGGATGTAC]
[-] EMBL BI796967 [TTTTTTCTAAAAGAGAATAACATTATATCAAGCACATAGTTATATATAGTATCAAATGATCTGGTTATACATTAGTGGATTACAGCTTTTTTTTAATACTCATTACAAACTTAGGATACAAGCTAAAAGATCATGTATCCACTGGGGATGTAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15954#1 ------------------------------------------------------------
consensus_15954#2 ------------------------------------------------------------
consensus_15954#4 ------------------------------------------------------------
consensus_15954#5 ------------------------------------------------------------
consensus_15954#3 ------------------------------------------------------------
consensus_15954#0 TTTTTTTTTTTTTTTAGATCAACACATAGTTATATATAGTATCAAATGATCTTGTTATAC 60
consensus_15954#6 ------------------------------------------------------------
consensus_15954#1 ------------------------------------------------------------
consensus_15954#2 ------------------------------------------------------------
consensus_15954#4 ------------------------------------------------------------
consensus_15954#5 ------------------------------------------------------------
consensus_15954#3 ------------------------------------------------------------
consensus_15954#0 ATTAGTGCATTACAGCCTTTTTTTTAATACTCATTACAAACTTAGGATACAAGCTAAAAG 120
consensus_15954#6 ------------------------------------------------------------
consensus_15954#1 ------------------------------------------------------------
consensus_15954#2 ------------------------------------------------------------
consensus_15954#4 ------------------------------------------------------------
consensus_15954#5 ------------------------------------------------------------
consensus_15954#3 ------------------------------------------------------------
consensus_15954#0 ATCATTGTATCCACTGGGGATGTACAGGTGTTGCATCTCTTATTGTTACTACCATATAGT 180
consensus_15954#6 ------------------------------------------------------------
consensus_15954#1 ------------------------------------------------------------
consensus_15954#2 ------------------------------------------------------------
consensus_15954#4 ------------------------------------------------------------
consensus_15954#5 ------------------------------------------------------------
consensus_15954#3 ------------------------------------------------------------
consensus_15954#0 ATTACAACCATGCCATGAGATGCACACACCAGAAACACTTGCATTACACTACCTTATCAG 240
consensus_15954#6 ------------------------------------------------------------
consensus_15954#1 --------TTTTTTTTTTGGAATAGATAAGGGTGGCTTTTTATATACTCATT--ACAAAC 50
consensus_15954#2 --------TTTTTTTTTTGGAATAGATAAGGGTGCCTTTTTATATACTCATT--AAAA-- 48
consensus_15954#4 --------------TGCAAGCAAAAAACNAGATTTATTCCTCTCGTTTCATTTTCCNAGA 46
consensus_15954#5 ------------------------------------------------------------
consensus_15954#3 -------------------------AAAGGTGTTCATTGTGCCAGTGCCAGC--CCCGGG 33
consensus_15954#0 CTAGGCCGGTACACTACACAAGACTAAAGGTGTTCATTGTGCCAGTGCCAGC--CCCGGG 298
consensus_15954#6 ------------------------------------------------------------
consensus_15954#1 TTAGGATACAAGCTAAAAGATCATTGGTATCCACG-GGGGATGTACAGG-TGTTGCATCT 108
consensus_15954#2 TTAGGATACAAGCTAAAAGATCATGGGTATCCACGTGGGGATGTACAGGGTGTTGCATCT 108
consensus_15954#4 TATAGAAGAACGGTAAACGGGCATAATTCTGAAAGAAAAATAGGATAGAGTACTGACTCT 106
consensus_15954#5 ------------------------------------------------------------
consensus_15954#3 TCCATGGAGNTGGTATNT----NTGGNTTGGNACAACCTGAAGAACACCTGGTTGCTTNT 89
consensus_15954#0 TCCATGGAGCTGGTATGT----CTGGCTTGGTACAACCTGAAGAACACCTGGTTGCTTCT 354
consensus_15954#6 ----------------------------------------------------TTTTTTCT 8
consensus_15954#1 C-----TTATGGGT-ACTACCATATAG--TATTACAACCA---TGCCA-TGAGA-TGCA- 154
consensus_15954#2 CG----TTATGGGTTACTACCATATAG--TATTACAACCAG--TGCCAGTGAGAATGCA- 159
consensus_15954#4 TGAGCTCCTCGACCTGCTGGGGAGTAA-GTTTTGCAGAGAAAC-GCTTGCGGCG-TGCT- 162
consensus_15954#5 --------TCGACCTNCTGNGGAGTAAAGTTNTGCAGAGAAACCGCTTGCGNCG-TGCT- 50
consensus_15954#3 TGAGCTCCTCGACCTGNTGGGGAGTAA-GTTTTGCAGAGAAACCGCTTGCGGCG-TGCT- 146
consensus_15954#0 TGAGCTCCTCGACCTGCTGGGGAGTAA-GTTTTGCAGAGAAACCGCTTGCGGCG-TGCT- 411
consensus_15954#6 AAAAGAGAATAACATTATATCAAGCACATAGTTATATATAG-TATCAAATGATCTGGTTA 67
* * * * * * * *
consensus_15954#1 CACACCAGAAACACTGTGCATTACACTACCTTATCAGCTAGGCCGGTACACT---ACACA 211
consensus_15954#2 CACACCAGAAA-ACACTGCATTACACTACCTTATCAGCTAGGCCGGTACACT---ACACA 215
consensus_15954#4 TGTAGTGGTAGAGCACCGCCTC-CTTTGCCTTCTCCTCGCTGCC-GAGGACGGGGGCGAG 220
consensus_15954#5 TGAANTGGTAGANCAACGCCTC-CTNTGCCTTCTCCNCNCTGCC-GAGGACNGGGACGAN 108
consensus_15954#3 TGTAGTGGTAGAGCACCGCCTC-CTTTGCCTTNTCCTCGCTGCCCGAGGACGGGGGCGAG 205
consensus_15954#0 TGTAGTGGTAGAGCACCGCCTC-CTTTGCCTTCTCCTCGCTGCC-GAGGACGGGGGCGAG 469
consensus_15954#6 TACATTAGTGGATTACAGCTTT-TTTTTAATACTCATTACAAACTTAGGATA----CAAG 122
* * ** * * * ** * * *
consensus_15954#1 AG-ACTAAA--GGTGTTCATTGTG-CCAGTGCCAGCCCCGGTGTCCAGGGAGCTGGTATG 267
consensus_15954#2 AGGACTAAGAGGGTGTTCATTGTG-CCAGTGCCAGCCCCGG-GTCCAGGGAGCTGGTATG 273
consensus_15954#4 GGTGCGGATGTGGAACTCCTCGGGGTCGGNGG-TCCGGGGNGGTCCAGGTAGACGATCTG 279
consensus_15954#5 GGTNCGGATGTGGAACTCCTCGGGGTCGCCGNACNCGGGACGGTCCAGGTAGACGATCTG 168
consensus_15954#3 GGTGCGGATGTGGAACTCCTCGGGGTCGGCGTCCGCGGGGCGGTCCAGGTAGACGATCTG 265
consensus_15954#0 GGTGCGGATGTGGAACTCCTCGGGGTCGGCGTCCGCGGGGCGGTCCAGGTAGACGATCTG 529
consensus_15954#6 CTAAAAGATCATGTATCCACTGGGGATGTAC----------------------------- 153
* * * * *
consensus_15954#1 TCTGGGCTGGGTACAACCTGAAGAACACCGGGTTGCTTCTTGAGCTCCTCGACCTGCTGG 327
consensus_15954#2 TCTGG-CTGGGTACAACCTGAAGAACACCGGGTTGCTTCTTGAGCTCCTCGACCTGCTGG 332
consensus_15954#4 CACGG-----TCGCCTCCTGCGCCN-GGGGGCNGCCTGCTCCGGCTGCTCGGCCGACATG 333
consensus_15954#5 CACGG-----TCGCCTCCTGCGCCGCGGGGGCCGNCTGCTCCGNCTGCTCGGCCGACATG 223
consensus_15954#3 CACGG-----TCGCCTCCTGCGCCGCGGGGGCCGCCTGCTCCGGCTGCTCGGCCGACATG 320
consensus_15954#0 CACGG-----TCGCCTCCTGCGCCGCGGGGGCCGCCTGCTCCGGCTGCTCGGCCGACATG 584
consensus_15954#6 ------------------------------------------------------------
consensus_15954#1 GGAGTAAGCTT-TGCAGAGAAACCGC--TTGCGGCGTGCATATGTAGGTGGTAAAGCACC 384
consensus_15954#2 GGAGTAAGCTTGTGCAGAGAAACCG---TTGCGGCGTGCT--TGTAGG-GGTAGAGCACC 386
consensus_15954#4 GNGAT---CTGGGGNACCGGATCTGCCGCCGCGAGGAAGATGAGGA-------------- 376
consensus_15954#5 GCGAT---CTGGGGAACGGAATCTGACGNCGCGAGGAAGATGAGGAGGAGGATTGGGAAG 280
consensus_15954#3 GCGAT---CTGGGGAACGGATGCTGCCGCCGCGAGGAAGATGAGGAGGAGGATTGGGAAG 377
consensus_15954#0 GCGAT---CTGGGGAACGGATGCTGCCGCCGCGAGGAAGATGAGGAGGAGGATTGGGAAG 641
consensus_15954#6 ------------------------------------------------------------
consensus_15954#1 GCCTCCTTATGCCTTCTCCTCG-TGCCGAGGACGGGGTGCGAGGGTGCGGATGTGCCGGA 443
consensus_15954#2 GC-TCCTTG-GGCTTCTCCTCGCTGCCGAGGACGGGG-GCGAGGGT-------------- 429
consensus_15954#4 ------------------------------------------------------------
consensus_15954#5 GAGTTGCT---------------------------------------------------- 288
consensus_15954#3 GAGTTCTCGTACCTCAATTCCACAGCCCCTCGTGCCGAATT------------------- 418
consensus_15954#0 GAGTTGCTGAGAACGCTCGAGGATTTGGTCTTCATCACCCGTGGATTCCGAGGTCTTAAT 701
consensus_15954#6 ------------------------------------------------------------
consensus_15954#1 --------------------------------
consensus_15954#2 --------------------------------
consensus_15954#4 --------------------------------
consensus_15954#5 --------------------------------
consensus_15954#3 --------------------------------
consensus_15954#0 AGCCGTGATATTCTCGTTCTCTTCCGCGTTAT 733
consensus_15954#6 --------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||