|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16242#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 29 consensus length = 1384 fasta sequence
[ATCTCTTTCTTCTCTCCAAAACACAAATCGTCGCC-GCATCCCCTC-AACTCCGGC-GATCCCC-TTGGCGGCGGCGGCGGCTT--CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG-CGTGGTGGGGGA-GG-T-GGA-TGAAGAACTGGATGCGAGGC-TGGATCTATCGAATCTGAG-AGCGC-ACCCG-CTG-AAGCCCG-TGA-T--CCAC-TAAT-GGAAAC--G-AATGAA--T-GATG-TACT-ACTACTAGTAGT-AAGCT-AAACCTAAATGT-AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT-GAGTGAAGATTTGGTTTCCATTGTAAAAAAAAAATTGTGCAGCTGTATCAATGTACATGAATGAGGAAGGCAGGCAGGTCAGTTGTTGAAGAGAAGAAGAGCATATTAGGAGTAGGTGGGAGGGGTAGCCGGCTGGTGCTGCTCGTCTTTGAAGTAGTTGCAGGTGATGAAGACGCCGCCGTTGAAGCACTCGGCGCGGGCGCAGCCGATCCTGGTGAAGTTGGGCCTGACCATGAAGGCGAAGTGGCCGCACTCGTGGAAGTCGACGCCGGCGGTGCATTTGCCGGTGTCCCTGTCGTAGAGGTGCTCCTCGTCGCCCCAGCATCGGACGGCGTCGGAAGCCCTGGCGTTCCAGCCGTTCCTCCCGATGTAGAGGCTCTCGGCGAAGCTGTTGCCGGTGGAGTGGCGGATCTGGCAGTCGCCGCGCATGGCGTCGGACCACCGCCGCGCCTGCCTCGCCAGCTTGTTATCCCACCTCATCGGCTGCAGCCCGTAGCGCGCGCGCAGCTGGTTGTGGCCGTCCACGAACTCCCGCGGCATCCCCTTGTACCAACCCATCCCATTGGTCCACGACACCAACCACCCCGCTGGTGCCGATGCTGATGCGTCGTCGTTGAACCAACACATCGCGTCGCCCACAGACAGCAGCAGAAACCAACACAATAGCAATAGTAATGGGAGGATCATCGCGGCGGCGGCCATTGTCTGCCGTCGTCCCGACGAGGACGAGGCCGCCC]
[+] EMBL AU183296 [ATCTCTTTCTTCTCTCCAAAACACAAATCGTCGCC GCATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGANTTTTTNGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG TGGGATTGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T CCAC TAAT GGAAAC G A ]
[+] EMBL AK121070 [ TTCTCTCCAAAACACAAATCGTCGCC GCATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA C CCAC TAAT GGAAAC G AATGAA T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGTGAAGATTTGGTTTCCATTGTATTGTATTGTTTGTGCAGCTGTATCAATGTACATGAATG ]
[+] EMBL CF280532 [ TCTCTCCAAAACACAAATCGTCGCC GCATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGAGGG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T CCAC TAAT GGAAAC G AATGAA T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGTNAGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCAAGGAAGTCCAGCAAGCGGATGAGC ]
[+] EMBL CF300914 [ TCTCTCC AAACACAAATCGTCGCC GCATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGAGGG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T CCAC TAAT GGAAAC G AATGAA T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAA ]
[+] EMBL CF337603 [ TCTCTCC AAACACAAATCGTCGCC GCATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GGTT GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T CCAC TAAT GGAAAC G AATGAA T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGTNAGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTT ]
[+] EMBL CF329920 [ AAATCGTCGCC GCATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGAGGG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T CCAC TAAT GGAAAC G AATGAA T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATG ]
[+] EMBL AU089815 [ CGTCGCCGGCATCCCNTCAAACTCCGGCGGATCCCCTTTGCCGCCGCCGNCGGCTTTCCCCCAATCACCCCACTCCACTTGAACTNCAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGNA GG T GGA TGAAGAACTGGATGCNAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T CCAC TAAT GGAAAC G AATGAA T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGTGAAGATTTGGTTTCCATTGTAAAAAAAAAAa ]
[+] EMBL AU058206 [ TCGCC GCATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGANGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T CCAC TAAT GG AAC G AATGAA T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTG ]
[+] EMBL OS0310A [ TCGCC GCATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T ]
[+] EMBL CF277617 [ CGCC GCATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T CCAC TAAT GGAAAC G AATGAA T GATG TACT ACTACTAGTAGT AAGCT AAACCTAA ]
[+] EMBL AU198148 [ GCC GCATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T CCAC TAAT GGAAAC G AATGAA T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAA ]
[+] EMBL OSS15602A [ CC GCATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTTCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAGAANCGC ACCCG NTG AAGCCCG TNATT CCAC TAAatg ]
[+] EMBL OSS16448A [ CC GCATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTNCGCCGGCCCGGGGCTCGAATCGCTCGTNGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGCTTGGATCTATCGAATCTGAGAANCGC ACCCGNTTG AAGGCCG TTA T CCAC TAATGGGAAAC GNATTGAAT T GATG TACTAATTACTtag ]
[+] EMBL OS1321709 [ ATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTNCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAG ACTNGATGCGAGGC TGGATCTATCGAATCTNAG AGCGa ]
[+] EMBL CA758737 [ C AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T CCAC TAAT GGAAAC G AATGAA T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGTGAAGATTTGGTTTCCATTGTAttgtaaa ]
[+] EMBL OSC29881 [ GGC GATCCCC TTGGCGGCGGCGGCGGCTT CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTNCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG ACCGC A ]
[+] EMBL BI799484 [ CTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGAT GCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T CCAC TAAT GGAAAC G AATGAA T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGTGAAGATTTGGTTTCCATTGTAAAAAAA ]
[-] EMBL CF277618 [ TCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTTTATTTTACCAGGGAGGGAGTGCAACAGCTTGTTTTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATTTGAG AGCGC ACCCG CTG AAGCCCG TGA T CCAC TAAT GGAAAC G AATGAA T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTTTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGTGAAaaaaaaa ]
[-] EMBL CF337604 [ GTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T CCAC TAAT GGAAAC G AATGAA T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGTGAAGATTTGGTTTCCATTGTATTAAAAA ]
[-] EMBL CF280533 [ GGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGT TGGTTTTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T CCAC TAAT GGAAAC G AATGGG T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTAAT AAGAAATGGGTGCTAGTGTTGCCGATGAGTGACCTTCTTTAAAAAAAAAAAGAAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGT AAGATTTGGTTT TTTTAAAA ]
[+] EMBL AU101468 [ cCCTCGATGAGTCCCATGAGAGGNTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAGCCGTGGTGGGGGA GN T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T CCAC TAAT GGAAAC G AATGAA T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGTGAAGATTTGGTTTCCA AAAAAAA ]
[+] EMBL AU223289 [ GAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T CCAC TAAT GGAAAC G AATGAA T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGTGAAGATTTGGTTTCCATTGTAAAAAA ]
[-] EMBL CF300915 [ GTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T CCAC TAAT GGAAAC G AATGAA T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGTGAATATTTGG ]
[+] EMBL AU162050 [ AGCGCAACCCG NTGAAAGCCCGTTGA TTCCCACTTAAT GGAAACCGG AATGAAATTGGATGTTACT ACTACTAGTAGTAAAGCTAAAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGTGAAGATTTGGTTTCCATTGTAAAAAAAAAA ]
[+] EMBL AU198149 [ nCCCG CTG AAGCCCG TGA T CCCC TAAT GGAAAC G AATGAA T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCANAAGTTGTGAANAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTNTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAANAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACNCAGACNCAGTGACTCAGT GAGTGAAGATTTGGTTTCNAAAAAAAAAAAAAAAaa ]
[+] EMBL CF327918 [ CT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGTGAAGATTTGGTTTCaaaaa ]
[-] EMBL CF327919 [ T ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGTGAAGATTTGGTTTCaaaaaa ]
[+] EMBL BI798272 [ GTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGTCGAGTGAAGATTTGGTTTCC TTGTAAAAAAA ]
[-] EMBL AK071326 [ TTGGTTTCCATTGTATTGTATTGTTTGTGCAGCTGTATCAATGTACATGAATGAGGAAGGCAGGCAGGTCAGTTGTTGAAGAGAAGAAGAGCATATTAGGAGTAGGTGGGAGGGGTAGCCGGCTGGTGCTGCTCGTCTTTGAAGTAGTTGCAGGTGATGAAGACGCCGCCGTTGAAGCACTCGGCGCGGGCGCAGCCGATCCTGGTGAAGTTGGGCCTGACCATGAAGGCGAAGTGGCCGCACTCGTGGAAGTCGACGCCGGCGGTGCATTTGCCGGTGTCCCTGTCGTAGAGGTGCTCCTCGTCGCCCCAGCATCGGACGGCGTCGGAAGCCCTGGCGTTCCAGCCGTTCCTCCCGATGTAGAGGCTCTCGGCGAAGCTGTTGCCGGTGGAGTGGCGGATCTGGCAGTCGCCGCGCATGGCGTCGGACCACCGCCGCGCCTGCCTCGCCAGCTTGTTATCCCACCTCATCGGCTGCAGCCCGTAGCGCGCGCGCAGCTGGTTGTGGCCGTCCACGAACTCCCGCGGCATCCCCTTGTACCAACCCATCCCATTGGTCCACGACACCAACCACCCCGCTGGTGCCGATGCTGATGCGTCGTCGTTGAACCAACACATCGCGTCGCCCACAGACAGCAGCAGAAACCAACACAATAGCAATAGTAATGGGAGGATCATCGCGGCGGCGGCCATTGTCTGCCGTCGTCCCGACGAGGACGAGGCCGCCC]
consensusID : consensus_16242#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 338 fasta sequence
[GTGGGCACGCTGAAGCCCGTGATCCACTAATGGAAACGAATGAATGATGTACTACTACTAGTAGTAATGCTAAACCTAAATGTAGTGTTGTCCCAAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTCCGATGAGTGAACTTCTTGTAAACGTACGCGAGGAAGTCCGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGTTTTATTGGTGTGGATGGTGATCCATGTTTGTTGAAACACGGAACACAGACACAGTGACTCCAGTGAGTGAAGATTTGTTCCCATTGTATTGTATTGTTTGCCACCCCACAATGTACATGAATGAGGAAGCCAGCAA]
[+] EMBL BI798831 [GTGGGCACGCTGAAGCCCGTGATCCACTAATGGAAACGAATGAATGATGTACTACTACTAGTAGTAATGCTAAACCTAAATGTAGTGTTGTCCCAAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTCCGATGAGTGAACTTCTTGTAAACGTACGCGAGGAAGTCCGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGTTTTATTGGTGTGGATGGTGATCCATGTTTGTTGAAACACGGAACACAGACACAGTGACTCCAGTGAGTGAAGATTTGTTCCCATTGTATTGTATTGTTTGCCACCCCACAATGTACATGAATGAGGAAGCCAGCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_16242#0 ATCTCTTTCTTCTCTCCAAAACACAAATCGTCGCCGCATCCCCTCAACTCCGGCGATCCC 60
consensus_16242#1 ------------------------------------------------------------
consensus_16242#0 CTTGGCGGCGGCGGCGGCTTCCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTC 120
consensus_16242#1 ------------------------------------------------------------
consensus_16242#0 CGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGG 180
consensus_16242#1 ------------------------------------------------------------
consensus_16242#0 CCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGA 240
consensus_16242#1 ------------------------------------------------------------
consensus_16242#0 GTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTA 300
consensus_16242#1 ------------------------------------------------------------
consensus_16242#0 CATCATAAGGGGCGACAACATCAGCGTGGTGGGGGAGGTGGATGAAGAACTGGATGCGAG 360
consensus_16242#1 ------------------------------------------------------------
consensus_16242#0 GCTGGATCTATCGAATCTGAGAGCGCACCCGCTGAAGCCCGTGATCCACTAATGGAAACG 420
consensus_16242#1 ----------------------GTGGGCACGCTGAAGCCCGTGATCCACTAATGGAAACG 38
* * * *******************************
consensus_16242#0 AATGAATGATGTACTACTACTAGTAGTAA-GCTAAACCTAAATGTAGTGTTGTCCCA-GA 478
consensus_16242#1 AATGAATGATGTACTACTACTAGTAGTAATGCTAAACCTAAATGTAGTGTTGTCCCAAGA 98
***************************** *************************** **
consensus_16242#0 AGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTT--AACGTACGCGA 536
consensus_16242#1 AGTTGTGAAGAAGTGGGTGCTAGTGTT-CCGATGAGTGAACTTCTTGTAAACGTACGCGA 157
*************************** ****************** ***********
consensus_16242#0 GGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGT 596
consensus_16242#1 GGAAGTCC-GCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATG-TTTTAT-TGGTG-T 213
******** ************************************ ****** ***** *
consensus_16242#0 GGATGGGTGATGCATGTTTGTTGAA-CACG-AACACAGACACAGTGACTC-AGTGAGTGA 653
consensus_16242#1 GGATGG-TGATCCATGTTTGTTGAAACACGGAACACAGACACAGTGACTCCAGTGAGTGA 272
****** **** ************* **** ******************* *********
consensus_16242#0 AGATTTGGTTTCCATTGTAAAAAAAAAATTGTGCAGCTGTATCAATGTACATGAATGAGG 713
consensus_16242#1 AGATTTG-TTCCCATTGTATTGTATTGTTTG--CCACCCCA-CAATGTACATGAATGAGG 328
******* ** ******** * *** * * * ******************
consensus_16242#0 AAGGCAGGCAGGTCAGTTGTTGAAGAGAAGAAGAGCATATTAGGAGTAGGTGGGAGGGGT 773
consensus_16242#1 AAGCCAGCAA-------------------------------------------------- 338
*** *** *
consensus_16242#0 AGCCGGCTGGTGCTGCTCGTCTTTGAAGTAGTTGCAGGTGATGAAGACGCCGCCGTTGAA 833
consensus_16242#1 ------------------------------------------------------------
consensus_16242#0 GCACTCGGCGCGGGCGCAGCCGATCCTGGTGAAGTTGGGCCTGACCATGAAGGCGAAGTG 893
consensus_16242#1 ------------------------------------------------------------
consensus_16242#0 GCCGCACTCGTGGAAGTCGACGCCGGCGGTGCATTTGCCGGTGTCCCTGTCGTAGAGGTG 953
consensus_16242#1 ------------------------------------------------------------
consensus_16242#0 CTCCTCGTCGCCCCAGCATCGGACGGCGTCGGAAGCCCTGGCGTTCCAGCCGTTCCTCCC 1013
consensus_16242#1 ------------------------------------------------------------
consensus_16242#0 GATGTAGAGGCTCTCGGCGAAGCTGTTGCCGGTGGAGTGGCGGATCTGGCAGTCGCCGCG 1073
consensus_16242#1 ------------------------------------------------------------
consensus_16242#0 CATGGCGTCGGACCACCGCCGCGCCTGCCTCGCCAGCTTGTTATCCCACCTCATCGGCTG 1133
consensus_16242#1 ------------------------------------------------------------
consensus_16242#0 CAGCCCGTAGCGCGCGCGCAGCTGGTTGTGGCCGTCCACGAACTCCCGCGGCATCCCCTT 1193
consensus_16242#1 ------------------------------------------------------------
consensus_16242#0 GTACCAACCCATCCCATTGGTCCACGACACCAACCACCCCGCTGGTGCCGATGCTGATGC 1253
consensus_16242#1 ------------------------------------------------------------
consensus_16242#0 GTCGTCGTTGAACCAACACATCGCGTCGCCCACAGACAGCAGCAGAAACCAACACAATAG 1313
consensus_16242#1 ------------------------------------------------------------
consensus_16242#0 CAATAGTAATGGGAGGATCATCGCGGCGGCGGCCATTGTCTGCCGTCGTCCCGACGAGGA 1373
consensus_16242#1 ------------------------------------------------------------
consensus_16242#0 CGAGGCCGCCC 1384
consensus_16242#1 -----------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||