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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16380#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 816 fasta sequence
[CGTATTCGCCCTTTGACTGGACTGAAGGAGTAGAAAAGCGGCGGGTGTGAACACCCTCCATTTTTTCCCCCCAATCCCTTCCGACGCGCTCTCGAG-CTCCCCGCATTCCCCGTCTCCCCTCCGCCTGCCCCGGG-AGCTCCTCCGGCG-AGAT-CCG-CC-TCTGACAGCCACCCT-CCCACGGCTGCTCGTCGTCC-T-CACCTCCGGCGA-CCGGCT-CAGGAAGAAAGTAACTT-GAG-CCATGGGAAA-GAGGAAGTC-AGCGGCTAAGCCACCACC-T-AAG-AAGAGGATGGA-CAAGCTTGA-TACTGTATTTTCCTGCCCATTCTGCAATCATGGCAGTAGTGTTGAATGCCGGATT-GATATGAAGAACCTGATCGGCGAGGCTTCATGTAGGATCTGTCAGGAAAACTTCAGCACCACTGTCAATGCACTGACTGAACCAA-TCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAACAATGTCGAAGACGACGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTCCCATCAAAAACTCAAAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGTGCCTTACCTGGGATATTGTAACCGTAACTTTTCAAATCAGCATGTTTCCATGGATGAAAATTCTATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF278935 [CGTATTCGCCCTTTGACTGGACTGAAGGAGTAGAAAAGCGGCGGGTGTGAACACCCTCCATTTTTTCCCCCCAATCCCTTCCGACGCGCTCTCGAG CTCCCCGCATTCCCCGTCTCCCCTCCGCCTGCCCCGGG AGCTCCTCCGGCG AGAT CCG CC TCTGACAGCCACCCT CCCACGGCTGCTTGTCGTCC T CACCTCCGGCGA CCGGCT CAGGAAGAAAGTAACTT GAG CCATGGGAAA GAGGAAGTC AGCGGCTAAGCCACCACC T AAG AAGAGGATGGA CAAGCTTGA TACTGTATTTTCCTGCCCATTCTGCAATCATGGCAGTAGTGTTGAATGCCGGATT GATATGAAGAACCTGATCGGCGAGGCTTCATGCAGGATCTGTCAGGAAAACTTCAGCACCACTGTCAATGCACTGACTGAACCAA TCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAACAATGTCGAAGACGACGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCGGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTCCCA ]
[+] EMBL AU070510 [ CGGCGGGTGTGAACACCCTCCATTTTTTCCCCCCAATCCCTTCCGACGCGCTCTCGAG CTCCCCGCATTCCCCGTCTCCCCTCCGCCTGCCCCGGG AGCTCCTCCGGCG AGAT CCG CC TCTGACAGCCACCCT CCCACGGCTGCTCGTCGTCC T CACCTCCGGCGA CCGGCT CAGGAAGAAAGTAACTT GAG CCATGGGAAA GAGGAAGTC AGCGGCTAAGCCACCACC T AAG AAGAGGATGGA CAAGCTTGA TACTGTATTTTCCTGCCCATTCTGCAATCATGGCAGTAGTGTTGAATGCCGGATT GATATGAAGAACCTGATCGGCGAGGCTTCATGTAGGATCTGTCAGGAAAACTTCAGCACCACTGTCAATGCACTGACTGAACCAA TC ]
[+] EMBL CK085269 [ GGGTGTGAACACCCTCCATTTTTTCCCCCCAATCCCTTCCGACGCGCTCTCGAG CTCCCCGCATTCCCCGTCTCCCCTCCGCCTGCCCCGGG AGCTCCTCCGGCG AGAT CCG CC TCTGACAGCCACCCT CCCACGGCTGCTCGTCGTCC T CACCTCCGGCGA CCGGCT CAGGAAGAAAGTAACTT GAG CCATGGGAAA GAGGAAGTC AGCGGCTAAGCCACCACC T AAG AAGAGGATGGA CAAGCTTGA TACTGTATTTTCCTGCCCATTCTGCAATCATGGCAGTAGTGTTGAATGCCGGATT GATATGAAG ]
[+] EMBL AU029271 [ CTCGAGNTTCCCCGCATTCCCCGTCTCCCCTCCGCCTGCCCCGGG AGCTCCTCCGGCG AGAT CCGCCC TCTGACAGCCACCTT CCCACGGCTGCTCGTCGTCC TCCACNTCCGGCGA CCGGCTCCAGGAAGAAAGTAACTT GAG CCATGGGAAA GAGGAAGTC AGCGGCTAAGCCACCACC T AAGAAAGAGGATGGA CAAGCTTGA TACTGTATTTTCCTGCCCATTCTGCAATCATGGCAGTAGTGTTGAATGCCGGATT GATATGAAGAACCTGATCGGCGAGGCTTCATGTAGGATCTGTCAGGAAAACTTCAGCACCACTGTCAATGCACTGACTGAACCAA TCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAACAATGTCGAAGACGACGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTCCCATCAAAAACTCAAAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGTGCCTTACCTGGGATATTGTAACCGTAACTTTTCAAATCAGCATGTTTCCATGGATGAAAAaaaaa ]
[+] EMBL AU085817 [ G CTCCCC NATTCCCCGTCTCCCCTCCGCCTGCCCCGGGAAGCTCCTCCGGCGAAGAT CCG CC TCTGACAGCCACCCT CCCACGGCTGCTCGTCGTCC T CACCTCCGGCGA CCGGCT CAGGAAGAAAGTAACTT GAG CCATGGGAAA GAGGAAGTC AGCGGCTAAGCCACCACC T AAG AAGAGGATGGA CAAGCTTGA TACTGTATTTTCCTGCCCATTCTGCAATCATGGCAGTAGTGTTGAATGCCGGATT GATATGAAGAACCTGATCGGCGAGGCTTCATGTAGGATCTGTCAGGAAAACTTCAGCACCACTGTCAATGCACTGACTGAACCAA TCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAACAATGTCGAAGACGACGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTCCCATCAAAAACTCAAAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGTGCCTTACCTGGGATATTGTAACCGTAACTTTTCAAATCAGCATGTTTCCATGGATGAAATTTCTATGAAAAAAA ]
[+] EMBL AU030031 [ GCCCCGGG AGCTTCTCCGGCG AGAT CCG CCTTCTGACNGCCACCNT CCCACGGCTGCTCGTCGTCC T NACCTCCGGCGA CCGGCT CAGGAAGAAAGTAACTTGGAG CCATGGGAAA GAGGAAGTC AGCGGCTNAGCCACCNCC T NAG AAGAGGATGGA CAAGCTTGA TACTGTATTTTCCTGCCCATTCTGCAATCATGGCAGTAGTGTTGAATGCCGGATT GATNTGAAGANCCTGATCGGCGAGGCTTCATGTAGGATCTGTCAGGAAAACTTCAGCACCACTGTCAATGCACTGACTGAACCAATTCGNCATNTNTNGCGAATGGATTGATGAGTGCGAGCGTGTCAACAATGTCGAAGACGACGNCGGAGCATGNGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCNCCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCNCCTAAATAAACNCCTGAAGACGTGATGTTNTACCGGCTTCCCATCAAAAACTCAAAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGTGCCTTNCCTGGGATATTGTAACCGTAACTTTTCAAATCAGCATGTTTCCNTGGNTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU095621 [ gnGATCCCG CCTTTTGACAGCCACCCTCCCCACGGNTGCTCGTCGTCCTT CACCTCCGGCGACCCGGCTCCAGGAAGAAAGTAACTT GAGCCCTTGGGAAAGGGGGAAGTC AGCCGNTAAGCCACCACCTT AAG AGAGGATGGA CAAGCTTGATTACTGTATTTTCCTGCCCATTCTGCAATCATGGCAGTAGTGTTGAATGCCGGATTGGATATGAAGAACCTGATCGGCGAGGCTTCATGTAGGATCTGTCAGGAAAACTTCAGCACCACTGTCAATGCACTGACTGAACCAA TCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAACAATGTCGAAGACGACGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTCCCATCAAAAACTCAAAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGTGCCTTACCTGGGATATTGTAACCGTAACTTTTCAAATCAGCATGTTTCCATGGA AAAA A AAAAATAAAAAA ]
[+] EMBL C98394 [ CTCCGGNGACCCGGCT CAGGNAGAAAGTAACTT GAGCCCATGGNAAA GAGGAAGTCAAGCGNCTAAGCCACCACC TAAAG AAGAGGATGGACCAAGCTTGA TACTGTATTTTCNTGCCCATTCTGAAATNATGGCAGTAGTGTTGAATGCCGGATT GNTATGAAGAACCTGATCGGCGAGGCTTCATGTAGGATCTNTCAGGAAAACTTCAGCACCACTGTCAATGCACTGACTGAACCAA TCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAACAATGTCGAAGACGACGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTCCCATCAAAAANTCAAAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGTGCCTTACCTGGGATATTGTAACCGTAACTTTTCAAATCAGCATGTTTCCATGGATGAAAA A AAAAAAAAA ]
[-] EMBL CF334750 [ GCGA CCGGCT CAGGAAGAAAGTAACTT GAG CCATGGGAAA GAGGAAGTC AGCGGCTAGGCCACCACCNT AAG AAGAGGATGGA CAAGCTTGA TACTGTATTTTCCTGCCCATTCTGCAATCATGGCAGTAGTGTTGAATGCCGGATT GATATGAAGAACCTGATCGGCGAGGCTTCATGTAGGATCTGTCAGGAAAACTTCAGCACCACTGTCAATGCACTGACTGAACCAA TCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAACAATGTCGAAGACGACGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTCCCATCAAAAACTCAAAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGTGCCTTACCTGGGATATTGTAACCGTAACTTTTCAAATCAGCATGTTTCCATGGATGAAAA ]
[+] EMBL AU057963 [ CGGATT GATATGAAGAACCTGATCGGCGAGGCTTCATGTAGGATCTGTCAGGAAAACTTCAGCACCACTGTCAATGCACTGACTGAACCAA TCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAACAATGTCGAAGACGACGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTCCCATCAAAAACTCAAAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGTGCCTTACCTGGGATATTGTAACCGTAACTTTTCAAATCAGCATGTTTCCATGGATGAAATTTCTATGAAAAAAAAAAAAANAAAAAgna ]
[+] EMBL BI797961 [ TGATGAGTGCGAGCGTGTCAACAATGTCGAAGACGACGACGGAGCATGAGCAACGCCAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTATCATC AAAACTCAAAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGT CCTTACCTGGGATATTGTAACCGTAACTTTTCAAATCAGCATGTTTCCATGGATGAAATTTCTATGAAAAAAAAAA ]
consensusID : consensus_16380#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 19 consensus length = 793 fasta sequence
[ACTGAAGGAGTAGTGTGAACACCCTCCATTTTTTCCCCCCAATCCCTTCCGACGCGCTCTCGAGCTCCCCGCATTCCCCGTCTCCCCTCCGCCTGCCCCGGGAGCTCCTCCGGCGAGATCCGCCTCTGACAGCCACCCTCCCACGGCTGCTCGTCGTCCTCACCTCCGGCGACCGGCTCAGGAAGAAAGTAACTTGAGCCATGGGAAAGAGGAAGTCA-GCGGCTAAGCCACCA-CCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCTGCAATCAT-GGCAGTAGT-GTTGAATGCCGGATT-GATATGAAGAACCTGATCGGCG-AGGCTTC-ATGTA-GGATC-TGTCAGGAAAACTTCAGCACC-AC-TG-TCAA-TGCACTGACTGAACCAATCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAAC-AATGTCGAAGACGA-CGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTCCCATCAAAAACTCAAAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGTGCCTTACCTGGGATATTGTAACCGTAACTTTTCAAATCAGCATGTTT-CCA-TGGATGAAATTTCTATGAATTCAAAGGCTACACTCCAAATTTGAGAAAAAAAAAAAAAAAAAA]
[+] EMBL CF334749 [ACTGAAGGAGTAGAAAGAACACCCTCCATTTTTTCCCCCCAATCCCTTCCGACGCGCTCTCGAGCTCCCCGCATTCCCCGTCTCCCCTCCGCCTGCCCCGGGAGCTCCTCCGGCGAGATCCGCCTCTGACAGCCACCCTCCCACGGCTGCTCGTCGTCCTCACCTCCGGCGACCGGCTCAGGAAGAAAGTAACTTGAGCCATGGGAAAGAGGAAGTCA GCGGCTAGGCCACCA CCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCTGCAATCAT GGCAGTAGT GTTGAATGCCGGATT GATATGAAGAACCTGATCGGCG AGGCTTC ATGTA GGATC TGTCAGGAAAACTTCAGCACC AC TG TCAA TGCACTGACTGAACCAATCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAAC AATGTCGAAGACGA CGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCG ]
[+] EMBL AK120972 [ GTGTGAACACCCTCCATTTTTTCCCCCCAATCCCTTCCGACGCGCTCTCGAGCTCCCCGCATTCCCCGTCTCCCCTCCGCCTGCCCCGGGAGCTCCTCCGGCGAGATCCGCCTCTGACAGCCACCCTCCCACGGCTGCTCGTCGTCCTCACCTCCGGCGACCGGCTCAGGAAGAAAGTAACTTGAGCCATGGGAAAGAGGAAGTCA GCGGCTAAGCCACCA CCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCTGCGATCAT GGCAGTAGT GTTGAATGCCGGATT GATATGAAGAACCTGATCGGCG AGGCTTC ATGTA GGATC TGTCAGGAAAACTTCAGCACC AC TG TCAA TGCACTGACTGAACCAATCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAAC AATGTCGGAGACGA CGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTCCCATCAAAAACTCAAAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGTGCCTTACCTGGGATATTGTAACCGTAACTTTTCAAATCAGCATGTTT CCA TGGATGAAATTTCTATGAATTCAAAGGCTACAC ]
[+] EMBL AK061633 [ TGTGAACACCCTCCATTTTTTCCCCCCAATCCCTTCCGACGCGCTCTCGAGCTCCCCGCATTCCCCGTCTCCCCTCCGCCTGCCCCGGGAGCTCCTCCGGCGAGATCCGCCTCTGACAGCCACCCTCCCACGGCTGCTCGTCGTCCTCACCTCCGGCGACCGGCTC AGAAAGTAACTTGAGCCATGGGAAAGAGGAAGTCA GCGGCTAAGCCACCA CCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCTGCAATCAT GGCAGTAGT GTTGAATGCCGGATT GATATGAAGAACCTGATCGGCG AGGCTTC ATGTA GGATC TGTCAGGAAAACTTCAGCACC AC TG TCAA TGCACTGACTGAACCAATCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAAC AATGTCGAAGACGA CGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTCCCATCAAAAACTCAAAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGTGCCTTACCTGGGATATTGTAACCGTAACTTTTCAAATCAGCATGTT ]
[+] EMBL CF324808 [ CACCCTCCATTTTTTCCCCCCAATCCCTTCCGACGCGCTCTCGAGCTCCCCGCATTCCCCGTCTCCCCTCCGCCTGCCCCGGGAGCTCCTCCGGCGAGATCCGCCTCTGACAGCCACCCTCCCACGGCTGCTCGTCGTCCTCACCTCCGGCGACCGGCTCAGGAAGAAAGTAACTTGAGCCATGGGAAAGAGGAAGTCA GCGGCTAAGCCACCA CCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCTGCAATCAT GGCAGTAGT GTTGAATGCCGGATT GATATGAAGAACCTGATCGGCG AGGCTTC ATGTA GGATC TGTCAGGAAAACTTCAGCACC AC TG TCAA TGCACTGACTGAACCAATCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAAC AATGTCGAAGACGA CGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTG ]
[+] EMBL C72405 [ CCTCCATTTTTTCCCCCCAATCCCTTCCGACGCGCTCTCGAGCTCCCCGCATTCCCCGTCTCCCCTCCGCCTGCCCCGGGAGCTCCTCCGGCGAGATCCGCCTCTGACAGCCACCCTCCCACGGCTGCTCGTCGTCCTCACCTCCGGCGACCGGCTCAGGAAGAAAGTAACTTGAGCCATGGGAAAGANGAAGTCA GCGGCTAAGCCACCA CCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCTGCAATCATNGGCAGTAGTGGTGGAATGCCGGATTNGATATGAAAGACCTGATGGGCGAAGGCTTCAATGTAGGGATCTTGTCAGGAAAACTTCAGGACCAACTTGTTNAATTGCAATGga ]
[+] EMBL OSC31081 [ CATTTTTTCCCCCCAATCCCTTCCGACGCGCTCTCGAGCTCCCCGCATTCCCCGTCTCCCCTCCGCCTGCCCCGGGAGCTCCTCCGGCGAGATCCGCCTCTGACAGCCACCCTCCCACGGCTGCTCGTCGTCCTCANCTCCGGCGACCGGCTCAGGAAGAAAGTAACTTGAGCCATGGGAAAGAGGAAGTCA GCGGCTAAGCCACCA CCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCTGCAATCAT GGCAGTAGT GTTGAATGCCGGATT GATATGAAGAACCTGATCGGCG AGGCTTC ATGTA GGATC TGTCAGGAAAACTTCAGCA ]
[+] EMBL C28391 [ ATTTTTTCCCCCCAATCCCTTCCGACGCGCTCTCGAGCTCCCCGCATTCCCCGTCTCCCCTCCGNCTGCCCCGGGAGCTCCTCCGGCGAGATCCGCCTCTGACAGCCACCCTCCCACGGCTGCTCGTCGTCCTCACCTCCGGCGACCGGCTCAGGAAGAAAGTAACTTGAGCCATGGGAAAGAGGAAGTCA GCGGCTAAGCCACCA CCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCTGCAATCAT GGCAGTAGT GTTGAATGCCGGATT GATATGAAGAACCTGATCGGCG AGGCTTC ATGTA GGATC TGTCAGGAAAACTTCAGCACC ACTTG TCAA TGCACTGACTGAACCAATCGACATATATAGCGGATGGATTTATGAGTGCGAGCGTGTCAAC AATGTCG AG CGANCGACGGAGC ]
[+] EMBL AU065604 [ ATTTTTTCCCCCCAATCCCTTCCGACGCGCTCTCGAGCTCCCCGCATTCCCCGTCTCCCCTCCGCCTGCCCCGGGAGCTCCTCCGGCGAGATCCGCCTCTGACAGCCACCCTCCCACGGCTGCTCGTCGTCCTCACCTCCGGCGACCGGCTCAGGAAGAAAGTAACTTGAGCCATGGGAAAGAGGAAGTCA GCGGCTAAGCCACCA CCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCTGCAATCAT GGCAGTAGT GTTGAATGCCGGATT GATATGAAGAACCTGATCGGCG AGGCTTC ATGTA GGATC TGTCAGG AAACTTCAGCACC A TG TC A TGCA TGA TGGACCAATCGACATATATAGCG ATGGA TGATGA TGCGA CGTGTC AC ATGTCGAggga ]
[+] EMBL C73974 [ ttnCCCTTCCGACGCGCTCTCGAGCTCCCCGCATTCCCCGTCTCCCCTCCGCCTGCCCCGGGAGCTCCTCCGGCGAGATCCGCCTCTGACAGCCACCCTCCCACGGCTGCTCGTCGTCCTCACCTCCGGNGACCGGNTCAGGAAGAAAGTAACTTGAGCCATGGGAAAGAGGAAGTCA GCGGCTAAG CACCA CCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCTGCAATCAT GGCAGTAGT GTTGAATGCCGGATT GATATGAAGAACCTGATCGGCG AGG TTC ATGTA GGATC TGTCAGG AAACTTCAGTACA NT TG TCAA TGCACTGACTGAACCAAT ]
[+] EMBL AU071181 [ GCGCTCTCGAGCTCCCCGCATTCCCCGTCTCCCCNCCGCCTGCCCCGGGAGCNCCTCCGGCGAGATCCGCCTCTGACAGCCACCCTCCCACGGCTGCTCGTCGTCCTCACCTCCGGCGACCGGCTCAGGAAGAAAGTAACTTGAGCCATGGGAAAGAGGAAGTCA GCGGCTAAGCCACCA CCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCTGCAATCAT GGCAGTAGT GTTGAATGCCGGATT GATATGAAGAACCTGATCGGCG AGGCTTC ATGTA GGATC TGTCAGGAAAACTTCAGCACC AC TG TCAA TGCACTGACTGAACCAATCGACATATATAGC ]
[+] EMBL CB000074 [ GGCGAGATCCGCCTCTGACAGCCACCCTCCCACCGCTGCTCGTCGTCCTCACCTCCGGCGACCGGCTCAGGAAGAAAGTAACTTGAGCCATGGGAAAGAGGAAGTCA GCGGCTAAGCCACCA CCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCTGCAATCAT GGCAGTAGT GTTGAATGCCGGATT GATATGAAGAACCTGATCGGCG AGGCTTC ATGTA GGATC TGTCAGGAAAACTTCAGCACC AC TG TCAA TGCACTGACTGAACCAATCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAAC AATGTCGAAGACGA CGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTCCCATCAAAAACTCAAAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGTGCCTTACCTGGGATATTGTAACCGTAACTTTTCAAATCAGCATGTTT CCA TGGATGAAATTTCTATGAATTCAAAGGCTACACTCCAAATTTGAGAAAAAAAA ]
[+] EMBL BI118736 [ GACAGCCACCCTCCCACGGCTGCTCGTCGTCCTCACCTCCGGCGACCGGCTCAGGAAGAAAGTAACTTGAGCCATGGGAAAGAGGAAGTCA GCGGCTAAGCCACCA CCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCTGCAATCAT GGCAGTAGT GTTGAATGCCGGATT GATATGAAGAACCTGATCGGCG AGGCTTC ATGTA GGATC TGTCAGGAAAACTTCAGCACC AC TG TCAA TGCACTGACTGAACCAATCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAAC AATGTCGAAGACGA CGACGGAGCATGGGCAACGCAAAATGCCTG ]
[-] EMBL CF279223 [ GTAACTTGAGCCATGGGAAAGAGGAAGTCA GCGGCTAAGCCACCACCCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCTGCAATCAT GGCAGTAGT GTTGAATGCCGGATT GATATGAAGAACCTGATCGGCG AGGCTTC ATGTA GGATC TGTCAGGAAAACTTCAGCACC AC TG TCAA TGCACTGACTGAACCAATCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAAC AATGTCGAAGACGA CGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTCCCATCAAAAACTCAAAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGTGCCTTACCTGGGATATTGTAACCGTAACTTTTCAAAaa ]
[+] EMBL BI806291 [ GAGGAAGTCACGCGGCTAAGCCACCA CCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCT CAATCAT GGCAGTAGT GTTGAATGCCGGATT GATATGAAGAACCTGATCGGCG AGGCTTC ATGTA GGATC TGTCAGGAAAACTTCAGCACC AC TG TCAA TGCACTGACTGAACC ATCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAAC AATGTCGAAGACGA CGACGGAGCATGAGCAACGC AAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTA GCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTCCCATC AAAACTC AAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGT CCTTACCTGGGATATTGTAACCGTAACTTTTCAAAa ]
[+] EMBL OS1321740 [ AGGCTTC ATGTA GGATC TGTCAGGAAAACTTCAGCACC AC TG TCAA TGCACTGACTGAACCAATCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAAC AATGTCGAAG CGA CGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTNCCATCAAAAACTCAAAAACAGTTATATGCGTNTGTAATTGTATGGGNCTAGTGCCTTACCTGGGGTATTGTAACCGTAct ]
[+] EMBL CB683616 [ a cGACC TGTCAGGAAAACTTCAGCACC AC TG TCAA TGCACTGACTGAACCAATCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAAC AATGTCGAAGACGA CGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTCCCATCAAAAACTCAAAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGTGCCTTACCTGGGATATTGTAACCGTAACTTTTCAAATCAGCATGTTT CCA TGGATGA ]
[-] EMBL OS39589 [ AACAAATGTCGAAGACGA CGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTATCATNAAAAANNNAAANNNAGTTATATGCGTGTGTAATTGTAT GGCCTAGTG CTTAC ]
[+] EMBL BI796850 [ AGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTATCATCAAAAACTC AAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGTGCCTTACCTGGGATATTGTAACCGTAACTTTTCAAATCAGCATGTTTCCCA TGGATGAAATTTCTATGAATTCAAAaa ]
[+] EMBL BI800062 [ TAAATAAACACCTGAAGACGTGATGTTATACCGGCTTATCATCCAAAACTCAAAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGTGCCTTACCTGGGATATTGTAACCGTAACTTTTCAAATCAGCATGTTT CCACTGGATGAAATTTCTATGAATTCAAAGGCTACACTCCAAATTTGAGAATGTTTTAAAAAAAAAA]
consensusID : consensus_16380#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence
[TCGTCCTCACCTCCGGCGACCGGCTCAGGAAGAAAGTAACTTGAGCCATGGGGAATAGTAGGAAGTCAGTCGGCTAAGCCACCACCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCTGCAATCATGGCAGTAGTGTTGAATGCCGGATTGATATGAAGAACCTGATCGGCGAGGCTTCATGTAGGATCTGTCAGGAAAACTTCAGCACCACTGTCAATGGTATGCGTTAGTGGTACACTGATTTTAGATTTCTCATTTCATTTAAAAATGGCAAGCAAGAGCATTGGATTTGTTATTGTTGGTTCCTTTCATGAAATGAACTGGTACCACCTTCGAGAACCAATTAGGTTAGCTTCTCATAGCCATGTCCTTTTAGTATTGTACTCTTTGCCTAGTCACTTTGTTTCAACCAACTGGAGATAATACAGCAGAACTAAGAGAGTAGACAGAATCTCTTGTAAAGATCAAATTGAGGATAAGAGAGGAAATTCAACTTGGAATCAGACTATTTATGGGTTTTATTTTTCAGTAAAA]
[+] EMBL BI802781 [TCGTCCTCACCTCCGGCGACCGGCTCAGGAAGAAAGTAACTTGAGCCATGGGGAATAGTAGGAAGTCAGTCGGCTAAGCCACCACCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCTGCAATCATGGCAGTAGTGTTGAATGCCGGATTGATATGAAGAACCTGATCGGCGAGGCTTCATGTAGGATCTGTCAGGAAAACTTCAGCACCACTGTCAATGGTATGCGTTAGTGGTACACTGATTTTAGATTTCTCATTTCATTTAAAAATGGCAAGCAAGAGCATTGGATTTGTTATTGTTGGTTCCTTTCATGAAATGAACTGGTACCACCTTCGAGAACCAATTAGGTTAGCTTCTCATAGCCATGTCCTTTTAGTATTGTACTCTTTGCCTAGTCACTTTGTTTCAACCAACTGGAGATAATACAGCAGAACTAAGAGAGTAGACAGAATCTCTTGTAAAGATCAAATTGAGGATAAGAGAGGAAATTCAACTTGGAATCAGACTATTTATGGGTTTTATTTTTCAGTAAAA]
consensusID : consensus_16380#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 493 fasta sequence
[GAAGGAGTAGAAAAAGCTTGACCGTTTGTTAGCGGCGGGTGTGAACACTCTCCATTTTTTCCCCCCAATCCCTTCCGACGCGCTCTCGAGCTCCCCGCATTCCCCGTCTCCCCTCCGCCTGCCCCGGGAGCTCCTCCGGCGAGATCCGCCTCTGACAGCCACCCTCCCACGGCTGCTCGTCTTTCTCACCTCCGGCGACCGGTTTAGGAAGAAAGTAACTTGAGCTTTGTTAAAGAGGAAGTCAGCGGCTAAGCCACCACCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCTGCAATCATGGCAGTAGTGTTGAATGCCGGATTGATATGAAGAACCTGATCGGCGAGGCTTCATGTAGGATCTGTCAGGAAAACTTCAGCACCACTGTCAATGCACTGACTGAACCAATCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAACAATGTCGAAGACGACGACGGAGCA]
[+] EMBL CF279224 [GAAGGAGTAGAAAAAGCTTGACCGTTTGTTAGCGGCGGGTGTGAACACTCTCCATTTTTTCCCCCCAATCCCTTCCGACGCGCTCTCGAGCTCCCCGCATTCCCCGTCTCCCCTCCGCCTGCCCCGGGAGCTCCTCCGGCGAGATCCGCCTCTGACAGCCACCCTCCCACGGCTGCTCGTCTTTCTCACCTCCGGCGACCGGTTTAGGAAGAAAGTAACTTGAGCTTTGTTAAAGAGGAAGTCAGCGGCTAAGCCACCACCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCTGCAATCATGGCAGTAGTGTTGAATGCCGGATTGATATGAAGAACCTGATCGGCGAGGCTTCATGTAGGATCTGTCAGGAAAACTTCAGCACCACTGTCAATGCACTGACTGAACCAATCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAACAATGTCGAAGACGACGACGGAGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_16380#0 CGTATTCGCCCTTTGACTGGACTGAAGGAGTAGAAAAGCGGCGGGTGTGAACACCCTCCA 60
consensus_16380#1 --------------------ACTGAAGGAGTAG------------TGTGAACACCCTCCA 28
consensus_16380#3 -----GAAGGAGTAGAAAAAGCTTGACCGTTTGTTA-GCGGCGGGTGTGAACACTCTCCA 54
consensus_16380#2 ------------------------------------------------------------
consensus_16380#0 TTTTTTCCCCCCAATCCCTTCCGACGCGCTCTCGAGCTCCCCGCATTCCCCGTCTCCCCT 120
consensus_16380#1 TTTTTTCCCCCCAATCCCTTCCGACGCGCTCTCGAGCTCCCCGCATTCCCCGTCTCCCCT 88
consensus_16380#3 TTTTTTCCCCCCAATCCCTTCCGACGCGCTCTCGAGCTCCCCGCATTCCCCGTCTCCCCT 114
consensus_16380#2 ------------------------------------------------------------
consensus_16380#0 CCGCCTGCCCCGGGAGCTCCTCCGGCGAGATCCGCCTCTGACAGCCACCCTCCCACGGCT 180
consensus_16380#1 CCGCCTGCCCCGGGAGCTCCTCCGGCGAGATCCGCCTCTGACAGCCACCCTCCCACGGCT 148
consensus_16380#3 CCGCCTGCCCCGGGAGCTCCTCCGGCGAGATCCGCCTCTGACAGCCACCCTCCCACGGCT 174
consensus_16380#2 ------------------------------------------------------------
consensus_16380#0 GCTCGTCGTCCTCACCTCCGGCGACCGGCTCAGGAAGAAAGTAACTTGAGCCATGGGAAA 240
consensus_16380#1 GCTCGTCGTCCTCACCTCCGGCGACCGGCTCAGGAAGAAAGTAACTTGAGCCATGGGAAA 208
consensus_16380#3 GCTCGTCTTTCTCACCTCCGGCGACCGGTTTAGGAAGAAAGTAACTTGAGCTTTGTTAAA 234
consensus_16380#2 -----TCGTCCTCACCTCCGGCGACCGGCTCAGGAAGAAAGTAACTTGAGCCATGGGGAA 55
** * ****************** * ******************** ** **
consensus_16380#0 GAG---GAAGTCAG-CGGCTAAGCCACCACCTAAGAAGAGGATGGACAAGCTTGATACTG 296
consensus_16380#1 GAG---GAAGTCAG-CGGCTAAGCCACCACCTAAGAAGAGGATGGACAAGCTTGATACTG 264
consensus_16380#3 GAG---GAAGTCAG-CGGCTAAGCCACCACCTAAGAAGAGGATGGACAAGCTTGATACTG 290
consensus_16380#2 TAGTAGGAAGTCAGTCGGCTAAGCCACCACCTAAGAAGAGGATGGACAAGCTTGATACTG 115
** ******** *********************************************
consensus_16380#0 TATTTTCCTGCCCATTCTGCAATCATGGCAGTAGTGTTGAATGCCGGATTGATATGAAGA 356
consensus_16380#1 TATTTTCCTGCCCATTCTGCAATCATGGCAGTAGTGTTGAATGCCGGATTGATATGAAGA 324
consensus_16380#3 TATTTTCCTGCCCATTCTGCAATCATGGCAGTAGTGTTGAATGCCGGATTGATATGAAGA 350
consensus_16380#2 TATTTTCCTGCCCATTCTGCAATCATGGCAGTAGTGTTGAATGCCGGATTGATATGAAGA 175
************************************************************
consensus_16380#0 ACCTGATCGGCGAGGCTTCATGTAGGATCTGTCAGGAAAACTTCAGCACCACTGTCAATG 416
consensus_16380#1 ACCTGATCGGCGAGGCTTCATGTAGGATCTGTCAGGAAAACTTCAGCACCACTGTCAATG 384
consensus_16380#3 ACCTGATCGGCGAGGCTTCATGTAGGATCTGTCAGGAAAACTTCAGCACCACTGTCAATG 410
consensus_16380#2 ACCTGATCGGCGAGGCTTCATGTAGGATCTGTCAGGAAAACTTCAGCACCACTGTCAATG 235
************************************************************
consensus_16380#0 CACTGACTGAACCAATCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAACA 476
consensus_16380#1 CACTGACTGAACCAATCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAACA 444
consensus_16380#3 CACTGACTGAACCAATCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAACA 470
consensus_16380#2 ----GTATGCGTTAGTGG---TACACTGATTTTAGATTTCTCATTTCA-----TTTAAAA 283
* ** * * * ** * * * **** * * * * * ** *
consensus_16380#0 ATGTCGAAGACGACGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCA 536
consensus_16380#1 ATGTCGAAGACGACGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCA 504
consensus_16380#3 ATGTCGAAGACGACGACGGAGCA------------------------------------- 493
consensus_16380#2 ATGGCAAGCAAGAGCATTGGATTTGT-TATTGTTGGTTCC------TTTCATGAAATGAA 336
*** * * * ** * *
consensus_16380#0 CTGGTGCTATTGACTGCCACCT-TCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTT 595
consensus_16380#1 CTGGTGCTATTGACTGCCACCT-TCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTT 563
consensus_16380#3 ------------------------------------------------------------
consensus_16380#2 CTGGTACCACCTTCGAGAACCAATTAGGTTAGCTTCTCATAGCC--ATGTCCTTTTAGTA 394
consensus_16380#0 TGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCG 655
consensus_16380#1 TGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCG 623
consensus_16380#3 ------------------------------------------------------------
consensus_16380#2 TTGTACTCTTTGCCTAGTCACTTTGTTTCAACCAACTGGAGATAATACAGCAGAACTAAG 454
consensus_16380#0 GCTTCCCATCAAAAACTCAAAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGTGCC 715
consensus_16380#1 GCTTCCCATCAAAAACTCAAAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGTGCC 683
consensus_16380#3 ------------------------------------------------------------
consensus_16380#2 AGAGTAGA-CAGAATCTCTTGTAAAGATCAAATTGAGGATAAGAGAGGAAATTCAACTTG 513
consensus_16380#0 TTACCTGGGATATTGTAACCGTAACTTTTCAAATCAGCATGTTTCCATGGATGAAAATTC 775
consensus_16380#1 TTACCTGGGATATTGTAACCGTAACTTTTCAAATCAGCATGTTTCCATGGATGAAATTTC 743
consensus_16380#3 ------------------------------------------------------------
consensus_16380#2 GAATCAGACTATTTATGGGTTTTATTTTTCAGTAAAA----------------------- 550
consensus_16380#0 TATGAAAAAAAAAA---------AAAAAAAAAAAAAAAAAAAAAAAAAAA 816
consensus_16380#1 TATGAATTCAAAGGCTACACTCCAAATTTGAGAAAAAAAAAAAAAAAAAA 793
consensus_16380#3 --------------------------------------------------
consensus_16380#2 --------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||