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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1655#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1138 fasta sequence
[CTCTCGCCCTATCGGTTCCGCTTCTCCTCTCCCCTCGCCATGTCGCTTGCCGTGGCCACTCCCGCCTCCGCCCGCCTCTCCCCGCTCACCACCTCCTCCCCCGAACCCTGCCGCCGCCGCCGCCTCCTCCTCTCCGCAGCCGCCCCTCTCCGGCGCACCCGTCTCCGGCGCCGCATCGCCGTCGTCGCGTCCGTCCCCGACCCCGCGGCGCGGCCGGCGGAGTACACGCCCTGGCTCATCGCCGGCCTCGGCAACCCCGGCAGCAAGTACCACGGCACGCGTCACAACGTGGGGTTTGAGATGGTCGATCGCATCGCGCGAGACGAGGGGATCACCATGAACACGATCCAGTCCAAGTCGCTGCTCGGAATAGGTTCGATTGGGGAAGTGCCTGTCTTGTTGGTAAAGCCACAATCATATATCAACTACAGTGGGGAGGCAATTGGACCTCTTGCTGCCTATTATCAAGTACCATTGCGGCATATCCTTGTGATGTATGATGAGATGAGTCTACCCAATGGTGTATTGCGTCTTCAACGGAAAGGTGGTCATGGTCGCCATAATGGCCTGCAGAACGTAATGGAATGTTTGGACAGTTCCCGTGAACTTCCTCGTTTATCTATAGGCATTGGTAGCCCACCCGGCAAAATGGACACGCGTGCTTTTCTTCTGCAGAAGTTCAGTTCAGAGGAACGGCTGCAGATTGACACTGCTTTGGAGCAAGGGGTGGATGCTGTGAGAACTCTTGTGTTGAAGGGTTTTAGTGGAAGTATTGAGAGATTCAATCTGGTTCAGAAGTACAAGTTCCACAGTGTTTGAGAATTATTAAGAGGCTTGGATATACTTGCTGAGGACGCATAAATACGCATCATCAATATCATTGGAAGTGTCGGACGTGGTACTTTGCACAATCTACGTAAGTGCACTAAGTTGCTTCTGCAGTATCCTATAATTTTGAGGATGCTAAGAAACTTGCAGGGTGTATATAGGTAGAGTACTTTTGCATTCTTTCCTTAGAGCAATTTTCATTAGAGAGGTAGTTGTGACCTCTAATTTTGTTCATATGTAAGCTACTTATTAAGTATAAGAGGTAGCATATACAATACACCACCTCTACACTAGCTTTATTACACTAACC]
[+] EMBL AK068422 [CTCTCGCCCTATCGGTTCCGCTTCTCCTCTCCCCTCGCCATGTCGCTTGCCGTGGCCACTCCCGCCTCCGCCCGCCTCTCCCCGCTCACCACCTCCTCCCCCGAACCCTGCCGCCGCCGCCGCCTCCTCCTCTCCGCAGCCGCCCCTCTCCGGCGCACCCGTCTCCGGCGCCGCATCGCCGTCGTCGCGTCCGTCCCCGACCCCGCGGCGCGGCCGGCGGAGTACACGCCCTGGCTCATCGCCGGCCTCGGCAACCCCGGCAGCAAGTACCACGGCACGCGTCACAACGTGGGGTTTGAGATGGTCGATCGCATCGCGCGAGACGAGGGGATCACCATGAACACGATCCAGTCCAAGTCGCTGCTCGGAATAGGTTCGATTGGGGAAGTGCCTGTCTTGTTGGTAAAGCCACAATCATATATCAACTACAGTGGGGAGGCAATTGGACCTCTTGCTGCCTATTATCAAGTACCATTGCGGCATATCCTTGTGATGTATGATGAGATGAGTCTACCCAATGGTGTATTGCGTCTTCAACGGAAAGGTGGTCATGGTCGCCATAATGGCCTGCAGAACGTAATGGAATGTTTGGACAGTTCCCGTGAACTTCCTCGTTTATCTATAGGCATTGGTAGCCCACCCGGCAAAATGGACACGCGTGCTTTTCTTCTGCAGAAGTTCAGTTCAGAGGAACGGCTGCAGATTGACACTGCTTTGGAGCAAGGGGTGGATGCTGTGAGAACTCTTGTGTTGAAGGGTTTTAGTGGAAGTATTGAGAGATTCAATCTGGTTCAGAAGTACAAGTTCCACAGTGTTTGAGAATTATTAAGAGGCTTGGATATACTTGCTGAGGACGCATAAATACGCATCATCAATATCATTGGAAGTGTCGGACGTGGTACTTTGCACAATCTACGTAAGTGCACTAAGTTGCTTCTGCAGTATCCTATAATTTTGAGGATGCTAAGAAACTTGCAGGGTGTATATAGGTAGAGTACTTTTGCATTCTTTCCTTAGAGCAATTTTCATTAGAGAGGTAGTTGTGACCTCTAATTTTGTTCATATGTAAGCTACTTATTAAGTATAAGAGGTAGCATATACAATACACCACCTCTACACTAGCTTTATTACACTAACC]
consensusID : consensus_1655#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 749 fasta sequence
[ATGAGTCTACCCAATGGTGTATTGCGTCTTCAACGGAAAGGTGGTCATGGTCGCCATAATGGCCTGCAGAACGTAATGGAATGTTTGGACAGTTCCCGTGAACTTCCTCGTTTATCTATAGGCATTGGTAGCCCACCCGGCAAAATGGACATGCGTGCTTTTCTTCTGCAGAAGTTCAGTTCAGAGGAACGGCTGCAGATTGACACTGCTTTGGAGCAAGGGGTGGATGCTGTGAGAACTCTTGTGTTGAAGGGTTTTAGTGGAAGTATTGAGAGATTCAATCTGGTTCAGAAGTACAAGTTCCACAGTGTTTGAGAATTATTAAGAGGCTTGGATATACTTGCTGAGGACGCATAAATACGCATCATCAATATCATTGGAAGTGTTGGACGTGGTACTTTGCACAATCTACGTAAGTGCACTAAGTNGCTCCTGCAGTATCCTATAATNTTGAGGATGCTAAGAAACTTGCAGGGTGTATATAGGTAGAGTACTTTTGCATTNCTTCCTTAGAGCAAGTNTTCATAGAAGGTAGTGGTGACCCCTAATTTGTTCATATGTAAGCTACTATAAATATAGAAGTACATATCATACACCAAAAAAAAAAANGGGGAACCAAAAAAAAAAAAACCAGGGGGCGGTCCCTTCCCATATATCATAATACGGCGTTTAAAGTTATGGAACGGCTTCACTATCCGCCATCCTCCGCCGCATTAGCCCCACCCCANNCCCAGAGTATCTTTTACCTT]
[+] EMBL CA753323 [ATGAGTCTACCCAATGGTGTATTGCGTCTTCAACGGAAAGGTGGTCATGGTCGCCATAATGGCCTGCAGAACGTAATGGAATGTTTGGACAGTTCCCGTGAACTTCCTCGTTTATCTATAGGCATTGGTAGCCCACCCGGCAAAATGGACATGCGTGCTTTTCTTCTGCAGAAGTTCAGTTCAGAGGAACGGCTGCAGATTGACACTGCTTTGGAGCAAGGGGTGGATGCTGTGAGAACTCTTGTGTTGAAGGGTTTTAGTGGAAGTATTGAGAGATTCAATCTGGTTCAGAAGTACAAGTTCCACAGTGTTTGAGAATTATTAAGAGGCTTGGATATACTTGCTGAGGACGCATAAATACGCATCATCAATATCATTGGAAGTGTTGGACGTGGTACTTTGCACAATCTACGTAAGTGCACTAAGTNGCTCCTGCAGTATCCTATAATNTTGAGGATGCTAAGAAACTTGCAGGGTGTATATAGGTAGAGTACTTTTGCATTNCTTCCTTAGAGCAAGTNTTCATAGAAGGTAGTGGTGACCCCTAATTTGTTCATATGTAAGCTACTATAAATATAGAAGTACATATCATACACCAAAAAAAAAAANGGGGAACCAAAAAAAAAAAAACCAGGGGGCGGTCCCTTCCCATATATCATAATACGGCGTTTAAAGTTATGGAACGGCTTCACTATCCGCCATCCTCCGCCGCATTAGCCCCACCCCANNCCCAGAGTATCTTTTACCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1655#0 CTCTCGCCCTATCGGTTCCGCTTCTCCTCTCCCCTCGCCATGTCGCTTGCCGTGGCCACT 60
consensus_1655#1 ------------------------------------------------------------
consensus_1655#0 CCCGCCTCCGCCCGCCTCTCCCCGCTCACCACCTCCTCCCCCGAACCCTGCCGCCGCCGC 120
consensus_1655#1 ------------------------------------------------------------
consensus_1655#0 CGCCTCCTCCTCTCCGCAGCCGCCCCTCTCCGGCGCACCCGTCTCCGGCGCCGCATCGCC 180
consensus_1655#1 ------------------------------------------------------------
consensus_1655#0 GTCGTCGCGTCCGTCCCCGACCCCGCGGCGCGGCCGGCGGAGTACACGCCCTGGCTCATC 240
consensus_1655#1 ------------------------------------------------------------
consensus_1655#0 GCCGGCCTCGGCAACCCCGGCAGCAAGTACCACGGCACGCGTCACAACGTGGGGTTTGAG 300
consensus_1655#1 ------------------------------------------------------------
consensus_1655#0 ATGGTCGATCGCATCGCGCGAGACGAGGGGATCACCATGAACACGATCCAGTCCAAGTCG 360
consensus_1655#1 ------------------------------------------------------------
consensus_1655#0 CTGCTCGGAATAGGTTCGATTGGGGAAGTGCCTGTCTTGTTGGTAAAGCCACAATCATAT 420
consensus_1655#1 ------------------------------------------------------------
consensus_1655#0 ATCAACTACAGTGGGGAGGCAATTGGACCTCTTGCTGCCTATTATCAAGTACCATTGCGG 480
consensus_1655#1 ------------------------------------------------------------
consensus_1655#0 CATATCCTTGTGATGTATGATGAGATGAGTCTACCCAATGGTGTATTGCGTCTTCAACGG 540
consensus_1655#1 ------------------------ATGAGTCTACCCAATGGTGTATTGCGTCTTCAACGG 36
************************************
consensus_1655#0 AAAGGTGGTCATGGTCGCCATAATGGCCTGCAGAACGTAATGGAATGTTTGGACAGTTCC 600
consensus_1655#1 AAAGGTGGTCATGGTCGCCATAATGGCCTGCAGAACGTAATGGAATGTTTGGACAGTTCC 96
************************************************************
consensus_1655#0 CGTGAACTTCCTCGTTTATCTATAGGCATTGGTAGCCCACCCGGCAAAATGGACACGCGT 660
consensus_1655#1 CGTGAACTTCCTCGTTTATCTATAGGCATTGGTAGCCCACCCGGCAAAATGGACATGCGT 156
******************************************************* ****
consensus_1655#0 GCTTTTCTTCTGCAGAAGTTCAGTTCAGAGGAACGGCTGCAGATTGACACTGCTTTGGAG 720
consensus_1655#1 GCTTTTCTTCTGCAGAAGTTCAGTTCAGAGGAACGGCTGCAGATTGACACTGCTTTGGAG 216
************************************************************
consensus_1655#0 CAAGGGGTGGATGCTGTGAGAACTCTTGTGTTGAAGGGTTTTAGTGGAAGTATTGAGAGA 780
consensus_1655#1 CAAGGGGTGGATGCTGTGAGAACTCTTGTGTTGAAGGGTTTTAGTGGAAGTATTGAGAGA 276
************************************************************
consensus_1655#0 TTCAATCTGGTTCAGAAGTACAAGTTCCACAGTGTTTGAGAATTATTAAGAGGCTTGGAT 840
consensus_1655#1 TTCAATCTGGTTCAGAAGTACAAGTTCCACAGTGTTTGAGAATTATTAAGAGGCTTGGAT 336
************************************************************
consensus_1655#0 ATACTTGCTGAGGACGCATAAATACGCATCATCAATATCATTGGAAGTGTCGGACGTGGT 900
consensus_1655#1 ATACTTGCTGAGGACGCATAAATACGCATCATCAATATCATTGGAAGTGTTGGACGTGGT 396
************************************************** *********
consensus_1655#0 ACTTTGCACAATCTACGTAAGTGCACTAAGTTGCTTCTGCAGTATCCTATAATTTTGAGG 960
consensus_1655#1 ACTTTGCACAATCTACGTAAGTGCACTAAGTNGCTCCTGCAGTATCCTATAATNTTGAGG 456
******************************* *** ***************** ******
consensus_1655#0 ATGCTAAGAAACTTGCAGGGTGTATATAGGTAGAGTACTTTTGCATTCTTTCCTTAGAGC 1020
consensus_1655#1 ATGCTAAGAAACTTGCAGGGTGTATATAGGTAGAGTACTTTTGCATTNCTTCCTTAGAGC 516
*********************************************** ***********
consensus_1655#0 AATTTTCATTAGAGAGGTAGTTGTGACCTCTAATTTTGTTCATATGTAAGCTACTTATTA 1080
consensus_1655#1 AAGTNTTCATAGA-AGGTAGTGGTGACCCCTAATTT-GTTCATATGTAAGCTACT--ATA 572
** * * **** ******* ****** ******* ****************** **
consensus_1655#0 AGTATAAGAGGTAGCATATACAATACACCACCTCTACACTAGCTTTATTACACTAACC-- 1138
consensus_1655#1 AATATAGAA----GTACATATCATACACCAAAAAAAAAAANGGGGAACCAAAAAAAAAAA 628
* **** * * * *** ******** * * * * * * **
consensus_1655#0 ------------------------------------------------------------
consensus_1655#1 AACCAGGGGGCGGTCCCTTCCCATATATCATAATACGGCGTTTAAAGTTATGGAACGGCT 688
consensus_1655#0 ------------------------------------------------------------
consensus_1655#1 TCACTATCCGCCATCCTCCGCCGCATTAGCCCCACCCCANNCCCAGAGTATCTTTTACCT 748
consensus_1655#0 -
consensus_1655#1 T 749
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||